
HELPY00002	6,7-dimethyl-8-ribityllumazine synthase	riboflavin synthase beta subunit	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	CDS_ID OB3213 riboflavin synthase beta chain	similar to AB003693-4|BAA20056.1| percent identity: 68 in 160 aa riboflavin synthase beta chain	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	SC6D7A.03c, ribH, 6,7-dimethyl-8-ribityllumazine synthase, len: 161 aa; highly similar to SW:RISB_CORAM (EMBL:AB003693) Corynebacterium ammoniagenes 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) RibH, 163 aa; fasta scores: opt: 456 z-score: 563.8 E(): 7.2e-24; 46.8% identity in 158 aa overlap. Contains Pfam match to entry PF00885 DMRL_synthase, 6,7-dimethyl-8-ribityllumazine synthase 6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	Residues 1 to 188 of 188 are 99 pct identical to residues 1 to 188 of a 188 aa protein from Escherichia coli gb: AAB40171.1 probable riboflavin synthase beta chain	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	riboflavin synthase, beta subunit	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase)	conserved gene riboflavin synthase, beta subunit	riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase)	
HELPY00003	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase kdsA carboxysome formation protein CcmA	identified by similarity to SP:Q46225; match to protein family HMM PF00793; match to protein family HMM TIGR01362 3-deoxy-8-phosphooctulonate synthase	Similar to Chlamydia psittaci putative 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SWALL:KDSA_CHLPS (SWALL:Q46225) (269 aa) fasta scores: E(): 5.2e-104, 95.91% id in 269 aa, and to Escherichia coli 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SWALL:KDSA_ECOLI (SWALL:P17579) (284 aa) fasta scores: E(): 1.4e-41, 45.97% id in 261 aa 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	similar to BR1133, 2-dehydro-3-deoxyphosphooctonate aldolase KdsA, 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	COG2877 2-dehydro-3-deoxyphosphooctonate aldolase	Similar to Pseudomonas aeruginosa 2-dehydro-3-deoxyphosphooctonate aldolase KdsA or Pa3636 SWALL:KDSA_PSEAE (SWALL:Q9ZFK4) (281 aa) fasta scores: E(): 4.1e-40, 45.52% id in 268 aa, and to Bacteroides thetaiotaomicron 2-dehydro-3-deoxyphosphooctonate aldolase BT4321 SWALL:AAO79426 (EMBL:AE016944) (266 aa) fasta scores: E(): 6.4e-89, 91.35% id in 266 aa, and to Chlorobium tepidum 2-dehydro-3-deoxyphosphooctonate aldolase KdsA or CT0088 SWALL:Q8KG80 (EMBL:AE012788) (280 aa) fasta scores: E(): 6.5e-48, 51.96% id in 254 aa putative 2-dehydro-3-deoxyphosphooctonate aldolase	2-Dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxy-phosphooctonate aldolase	3-deoxy-D-manno-octulosonic acid (KDO) 8- phosphate synthase	2-dehydro-3-deoxyphosphooctonate aldolase	DAHP synthetase I/KDSA superfamily:2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	3-deoxy-8-phosphooctulonate synthase	2-dehydro-3-deoxyphosphooctonate aldolase EC 4.1.2.16	
HELPY00004	Carbonic anhydrase	CARBONIC ANHYDRASE	Carbonic anhydrase 1	Carbonic anhydrase	SC9B1.02c, probable carbonic anhydrase, len: 193aa; similar to many eg. SW:CYNT_ECOLI carbonic anhydrase from Escherichia coli (219 aa) fasta scores; opt: 512, z-score: 618.8, E(): 3.8e-27, (43.6% identity in 188 aa overlap).  Contains two Pfam matches to entry PF00484 Pro_CA, Prokaryotic-type carbonic anhydrases and Prosite matches to PS00705 Prokaryotic-type carbonic anhydrases signature 2 and PS00704 Prokaryotic-type carbonic anhydrases signature 1. probable carbonic anhydrase	carbonic anhydrase	Carbonic anhydrase	identified by similarity to SP:P17582; match to protein family HMM PF00484 carbonic anhydrase	Carbonic anhydrase protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark carbonic anhydrase	Carbonic anhydrase	Carbonic anhydrase	Carbonic anhydrase	COG0288 carbonic anhydrase	Carbonic anhydrase	carbonic anhydrase	identified by similarity to SP:P17582; match to protein family HMM PF00484 carbonic anhydrase	Carbonic anhydrase, prokaryotic and plant	Carbonate dehydratase	Carbonic anhydrase, prokaryotic	Carbonic anhydrase	Carbonic anhydrase	Carbonic anhydrase COG0288	carbonic anhydrase PFAM: carbonic anhydrase: (9.6e-18) KEGG: dra:DR2238 carbonic anhydrase, ev=2e-91, 72% identity	Carbonic anhydrase	carbonic anhydrase	beta-carbonic anhydrase	putative carbonic anhydrase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	hypothetical protein similarity to COG0288 Carbonic anhydrase(Evalue: 2E-59)	
HELPY00005	Orotidine 5'-phosphate decarboxylase	orotidine-5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	CDS_ID OB1494 orotidine 5'-phosphate decarboxylase	orotidine 5`-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Residues 1 to 245 of 245 are 98 pct identical to residues 1 to 245 of a 245 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287916.1 orotidine-5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	orotidine 5`-phosphate decarboxylase	conserved gene orotidine 5'-phosphate decarboxylase PyrF	orotidine 5`-phosphate decarboxylase	Orotidine 5'-phosphate decarboxylase	
HELPY00006	Pantothenate synthetase	pantothenate synthetase (pantoate--beta-alanine ligase)	Pantothenate synthetase	Pantoate--beta-alanine ligase	Pantoate--beta-alanine ligase	Pantothenate synthetase	Pantothenate synthetase	CDS_ID OB3275; pantothenate synthetase pantoate beta-alanine ligase	similar to AL591789-234|CAC46741.1| percent identity: 46 in 287 aa pantoate--beta-alanine ligase	pantoate-beta-alanine ligase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantoate-beta-alanine ligase	Pantothenate synthetase	Residues 1 to 283 of 283 are 99 pct identical to residues 1 to 283 of a 283 aa protein from Escherichia coli K12 ref: NP_414675.1 pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	Pantothenate synthetase	similar to pantothenate synthetases hypothetical protein	conserved gene pantoate-beta-alanine ligase	
HELPY00312	Outer membrane protein	outer membrane protein 5 putative outer membrane protein, similar to Hop family High confidence in function and specificity	
HELPY00009	60 kDa chaperonin	chaperonin (GroEL protein)	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin 1	60 kDa chaperonin 2	60 kDa chaperonin	CDS_ID OB0656; chaperonin class I heat shock protein	similar to U90204-1|AAB49990.1| percent identity: 81 in 546 aa putative heat shock protein 60 GroEL	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	Chaperonin protein groEL	60 kDa chaperonin	Residues 1 to 548 of 548 are 100 pct identical to residues 1 to 548 of a 548 aa protein from Escherichia coli O157:H7 ref: NP_313151.1 chaperonin GroEL	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	
HELPY00010	10 kDa chaperonin	chaperonin (GroES protein)	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	CDS_ID OB0655; chaperonin class I heat shock protein	similar to AX073942-1|CAC28429.1| percent identity: 77 in 100 aa putative chaperonin GroES	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	SC6G4.39, groES, 10 kD chaperonin cpn10, len: 102 aa ; identical to CH10_STRCO (102 aa) and highly similar to ma ny e.g. CH10_BACSU (94 aa), fasta scores; opt: 353 z-score: 567.4 E(): 2.4e-24, 54.3% identity in 92 aa overlap. Cont ains PS00681 Chaperonins cpn10 signature and Pfam match to entry PF00166 cpn10, Chaperonins 10 Kd subunit, score 200.6 0, E-value 2.4e-56 10 kD chaperonin cpn10	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin 1	10 kDa chaperonin	Chaperonin protein groES	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin (Protein Cpn10) (groES protein) (Heat shock protein A)	conserved gene Hsp10, 10 kDa chaperonin GroES	10 kDa chaperonin (Protein Cpn10) (groES protein) (Heat shock protein A)	10 kDa chaperonin	
HELPY00011	DNA primase	DNA primase	DNA primase	DNA primase	similar to Z83860-10|CAB06159.1| percent identity: 58 in 626 aa putative DNA primase DnaG	Putative DNA primase	DNA primase	DNA primase	DNA primase	DNA primase	DNA primase	DNA primase	conserved gene DNA primase DnaG	DNA primase	DNA primase	identified by similarity to SP:P56064; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 DNA primase	DNA primase DnaG	Similar to Bacillus subtilis DNA primase DnaG or DnaE SWALL:PRIM_BACSU (SWALL:P05096) (603 aa) fasta scores: E(): 5.1e-46, 29.57% id in 568 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or B3066 or Z4419 or ECS3949 or SF3107 or S3312 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 2.2e-37, 29.09% id in 574 aa putative DNA primase	DNA primase	DNA primase	DNA primase	DNA primase	DNA primase (bacterial type) DnaG protein	Similar to Q8DEG2 DNA primase from Vibrio vulnificus (587 aa). FASTA: opt: 1152 Z-score: 1324.3 E(): 7.2e-66 Smith-Waterman score: 1155; 39.679 identity in 499 aa overlap. DNA primase	DNA primase	Similar to Mycobacterium smegmatis DNA primase DnaG SWALL:PRIM_MYCSM (SWALL:O52200) (636 aa) fasta scores: E(): 1.1e-43, 36.34% id in 630 aa, and to Escherichia coli DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 5.1e-37, 34.7% id in 438 aa DNA primase	DNA primase	DNA primase	DNA primase	
HELPY00012	Putative uncharacterized protein	Putative uncharacterized protein	Putative	conserved hypothetical protein	Putative uncharacterized protein	Thiamine biosynthesis protein	Thiamine biosynthesis protein:ExsB	TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase	argininosuccinate synthase	argininosuccinate synthase	Hypothetical protein	predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain	thiamin biosynthesis protein ThiI identified by match to protein family HMM PF02568	putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / fibronectin/fibrinogen-binding protein	conserved protein	thiamine biosynthesis protein:ExsB identified by match to protein family HMM PF00764	conserved hypothetical protein KEGG: noc:Noc_2654 hypothetical protein	tRNA methyltransferase Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)(O53271) Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Specificity unclear	TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase	thiamine biosynthesis protein PFAM: thiamine biosynthesis protein KEGG: gsu:GSU0434 hypothetical protein	conserved hypothetical protein	thiamine biosynthesis protein	TRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase	Hypothetical protein	putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / fibronectin/fibrinogen-binding protein KEGG: sat:SYN_01419 putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase / fibronectin/fibrinogen-binding protein	Putative uncharacterized protein	Hypothetical protein	Thiamine biosynthesis protein:ExsB	Putative uncharacterized protein	
HELPY00013	Putative uncharacterized protein	hypothetical protein	Hypothetical protein	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	conserved hypothetical protein KEGG: mmc:Mmcs_5028 hypothetical protein	Hypothetical protein	conserved hypothetical protein KEGG: mmc:Mmcs_5028 hypothetical protein	conserved hypothetical protein KEGG: msu:MS2305 hypothetical protein	Hypothetical protein	conserved hypothetical protein KEGG: mmc:Mmcs_5028 hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	conserved hypothetical protein KEGG: mva:Mvan_0337 conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00014	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	ComB2 competence protein	
HELPY00015	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	ComB3 competence protein	
HELPY00016	VirB4 homolog	DNA transfer protein	ATPase/DNA transfer protein	Type IV secretory pathway VirB4 components-like protein	TRSE protein	type IV secretory pathway component VirB4 hypothetical protein	putative TrbE-like protein similar to Ralstonia metallidurans gi:22980948; integral membrane protein	Type IV secretory pathway, Conjugal transfer protein, putative ATPase	Type IV secretion system protein	Putative uncharacterized protein	Type IV secretion system protein VirB4	ATPase , DNA transfer protein, virB4-like protein	ComB4 competence protein	ATPase/DNA transfer protein	
HELPY00017	Putative uncharacterized protein	identified by similarity to OMNI:NTL01HP00016; match to protein family HMM PF04141 lipoprotein, putative	Putative uncharacterized protein	Putative	identified by match to protein family HMM PF04141; match to protein family HMM PF07719 putative lipoprotein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; PubMedId : 15028690; Product type e : enzyme putative adenine DNA methylase conserved in bacteria; similar to YhdJ in E. coli; AdoMet site	conserved hypothetical protein	conserved hypothetical protein	hypothetical protein	Hypothetical protein	conserved hypothetical protein with DUF394 domain hypothetical protein	TPR domain protein	Hypothetical protein	Tetratricopeptide TPR_2 repeat protein PFAM: Tetratricopeptide TPR_2 repeat protein KEGG: son:SO1061 TPR domain protein	conserved hypothetical protein; putative signal peptide Evidence 4 : Homologs of previously reported genes of unknown function	lipoprotein, putative	Putative uncharacterized protein	Tetratricopeptide TPR_2 repeat protein precursor	Tetratricopeptide TPR_2 repeat protein precursor	PFAM: Tetratricopeptide TPR_2 repeat protein KEGG: shw:Sputw3181_0935 tetratricopeptide TPR_2 repeat protein Tetratricopeptide TPR_2 repeat protein	Putative lipoprotein	Tetratricopeptide TPR_2 repeat protein	Putative uncharacterized protein precursor	conserved hypothetical protein KEGG: plt:Plut_0082 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Tetratricopeptide TPR_2 repeat protein	Conserved hypothetical lipoprotein	
HELPY00018	Chemotaxis protein	Chemotaxis signal transduction protein CheV	Putative chemotaxis protein	identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 chemotaxis protein CheV, putative	identified by match to protein family HMM PF00072; match to protein family HMM PF01584 chemotaxis protein CheV	Response regulator receiver:CheW-like protein	Response regulator receiver:CheW-like protein	Response regulator receiver:CheW-like protein	Response regulator receiver (CheY-like) modulated CheW protein	CheW protein	CheW-like protein	chemotaxis protein	response regulator receiver modulated CheW protein	response regulator receiver (CheY-like) modulated CheW protein	chemotaxis signal transduction protein CheV High confidence in function and specificity	chemotaxis specific response regulator containing a CheW-domain REC (residues195 to 319, 8e-14) with a complete phosphorylation pocket (DD-D59-S95-K113)	Putative Response regulator receiver, CheW-like domain	Response regulator receiver modulated CheW protein	Response regulator receiver modulated CheW protein	Chemotaxis protein	Chemotaxis protein CheV	Response regulator receiver modulated CheW protein	Chemotaxis protein	Probable chemotaxis protein	Putative CheV	Chemotaxis signal transduction protein CheV	Response regulator receiver modulated CheW protein	
HELPY00019	Carboxynorspermidine decarboxylase	CARBOXYNORSPERMIDINE DECARBOXYLASE	Carboxynorspermidine decarboxylase	Carboxynorspermidine decarboxylase	Diaminopimelate decarboxylase	Carboxynorspermidine decarboxylase	carboxynorspermidine decarboxylase	identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047 carboxynorspermidine decarboxylase	Carboxynorspermidine decarboxylase NspC	similar to BR0334, carboxynorspermidine decarboxylase NspC, carboxynorspermidine decarboxylase	Carboxynorspermidine decarboxylase	Putative carboxynorspermidine decarboxylase	Carboxynorspermidine decarboxylase	Carboxynorspermidine decarboxylase	Similar to Bacteroides thetaiotaomicron carboxynorspermidine decarboxylase BT0674 SWALL:Q8A9Z1 (EMBL:AE016928) (379 aa) fasta scores: E(): 6.8e-149, 91.29% id in 379 aa, and to Bacillus halodurans carboxynorspermidine decarboxylase BH3958 SWALL:Q9K5X8 (EMBL:AP001520) (379 aa) fasta scores: E(): 1.9e-67, 44.06% id in 379 aa putative carboxynorspermidine decarboxylase	Carboxynorspermidine decarboxylase	Carboxynorspermidine decarboxylase	identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047 carboxynorspermidine decarboxylase	Orn/DAP/Arg decarboxylase, family 2:Carboxynorspermidine decarboxylase	Carboxynorspermidine decarboxylase	COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] putative carboxynorspermidine decarboxylase protein	Orn/DAP/Arg decarboxylase 2	Carboxynorspermidine decarboxylase	Orn/DAP/Arg decarboxylase 2	Carboxynorspermidine decarboxylase	carboxynorspermidine decarboxylase TIGRFAM: carboxynorspermidine decarboxylase: (9.3e-283) PFAM: Orn/DAP/Arg decarboxylase 2: (4.9e-29) KEGG: dra:DR1410 carboxynorspermidine decarboxylase, ev=0.0, 85% identity	carboxynorspermidine decarboxylase	3-oxoacyl-(acyl-carrier-protein) reductase	hypothetical protein similarity to COG0019 Diaminopimelate decarboxylase(Evalue: 1E-131)	
HELPY00020	Putative uncharacterized protein	putative membrane-associated phosphoesterase	hypothetical protein	conserved hypothetical protein Function unclear	Lipid A 1-phosphatase	Putative uncharacterized protein	Lipid A 1-phosphatase	
HELPY00021	Conserved hypothetical integral membrane protein	Predicted membrane-associated metal-dependent hydrolase	Putative uncharacterized protein	Putative	unknown	putative membrane-associated sulfatase	conserved hypothetical protein	integral membrane protein	Specificity unclear	putative transmembrane sulfatase Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	Sulfatase domain protein	sulfatase PFAM: sulfatase; protein of unknown function DUF1705 KEGG: pol:Bpro_3130 sulfatase	Uncharacterized conserved protein	Putative sulfatase	KEGG: cps:CPS_2717 putative sulfatase putative sulfatase	Putative uncharacterized protein	Sulfatase	Putative uncharacterized protein	Sulfatase	Lipid A phosphoethanolamine transferase	Inner membrane protein YhbX	Integral membrane protein	Sulfatase	Outer-membrane protein yhbx	Integral membrane protein	Putative sulfatase	Putative membrane-associated metal-dependent hydrolase	Sulfatase	Sulfatase	
HELPY00024	Outer membrane protein	outer membrane protein HopD	Outer membrane protein HopD	Outer membrane protein	Outer membrane protein HopD	

HELPY00025	Citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	similar to X66112-1|CAA46902.1| percent identity: 92 in 435 aa citrate synthase	Putative citrate (Si)-synthase	citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	SCC57A.07c, citA, citrate synthase, len: 429 aa.  Previously sequenced and characterised: Streptomyces coelicolor TR:AAF14286(EMBL:AF181118) citrate synthase (citA). Contains a Prosite hit to PS00480 Citrate synthase signature and a Pfam match to entry PF00285 citrate_synt, Citrate synthase. citrate synthase.	Citrate synthase	Citrate synthase	Citrate synthase	Residues 1 to 427 of 427 are 99 pct identical to residues 1 to 427 of a 427 aa protein from Escherichia coli K12 ref: NP_415248.1 citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	citrate synthase	conserved gene citrate synthase	citrate synthase	identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798 citrate synthase I	Citrate synthase	Citrate synthase	identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798 citrate synthase	Citrate synthase	
HELPY00026	Isocitrate dehydrogenase	Isocitrate dehydrogenase, NADP-dependent	Isocitrate dehydrogenase	Isocitrate dehydrogenase	CDS_ID OB2167 isocitrate dehydrogenase (NADP+)	Isocitrate dehydrogenase	Isocitrate dehydrogenase	Isocitrate dehydrogenase	Residues 1 to 416 of 416 are 100 pct identical to residues 1 to 416 of a 416 aa protein from Escherichia coli dbj: BAB61874.1 isocitrate dehydrogenase	Isocitrate dehydrogenase	Isocitrate dehydrogenase	Isocitrate dehydrogenase	Isocitrate dehydrogenase	Isocitrate dehydrogenase	isocitrate dehydrogenase	conserved gene isocitrate dehydrogenase, NADP-dependent	isocitrate dehydrogenase	identified by similarity to EGAD:23750; match to protein family HMM PF00180; match to protein family HMM TIGR00183 isocitrate dehydrogenase, NADP-dependent	isocitrate dehydrogenase (NADP+)	isocitrate dehydrogenase	Isocitrate dehydrogenase	Isocitrate dehydrogenase	InterProMatches:IPR004439; Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450), Biological Process: tricarboxylic acid cycle (GO:0006099) isocitrate dehydrogenase	isocitrate dehydrogenase [NADP]	Isocitrate dehydrogenase	IPR001804: Isocitrate/isopropylmalate dehydrogenase isocitrate dehydrogenase in e14 prophage, specific for NADP+	similar to Salmonella typhi CT18 isocitrate dehydrogenase isocitrate dehydrogenase	isocitrate dehyrogenase	Isocitrate dehydrogenase	
HELPY00028	Dethiobiotin synthetase	similar to AL391014-21|CAC01470.1| percent identity: 47 in 220 aa dethiobiotin synthase	Dethiobiotin synthetase	Dethiobiotin synthetase	Dethiobiotin synthetase	Dethiobiotin synthetase	Dethiobiotin synthetase	Dethiobiotin synthetase	similar to Salmonella typhi CT18 dethiobiotin synthetase dethiobiotin synthetase	Dethiobiotin synthetase	Dethiobiotin synthetase	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme dethiobiotin synthetase (Dethiobiotin synthase) (DTB synthetase) (DTBS)	Dethiobiotin synthetase	dethiobiotin synthetase	Similar to Bacillus sphaericus dethiobiotin synthetase BioD SWALL:BIOD_BACSH (SWALL:P22818) (234 aa) fasta scores: E(): 2e-15, 34.69% id in 196 aa, and to Bacteroides thetaiotaomicron dethiobiotin synthetase BT1446 SWALL:Q8A7S8 (EMBL:AE016931) (215 aa) fasta scores: E(): 2.3e-61, 79.81% id in 213 aa, and to Neisseria meningitidis dethiobiotin synthetase BioD or NMA0943 SWALL:BIOD_NEIMA (SWALL:Q9JV95) (215 aa) fasta scores: E(): 2.6e-40, 54.63% id in 205 aa putative dethiobiotin synthetase	Dethiobiotin synthetase	Similar to AAO90524 Dethiobiotin synthetase from Coxiella burnetii (242 aa). FASTA: opt: 464 Z-score: 551.2 E(): 7.5e-23 Smith-Waterman score: 464; 34.498 identity in 229 aa overlap dethiobiotin synthetase	Dethiobiotin synthetase	dethiobiotin synthase	dethiobiotin synthetase	identified by match to protein family HMM PF01656; match to protein family HMM TIGR00347 dethiobiotin synthetase	Dethiobiotin synthase	Dethiobiotin synthase	Best Blastp Hit: pir||E81164 dethiobiotin synthase NMB0733 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225961|gb|AAF41146.1| (AE002428) dethiobiotin synthase [Neisseria meningitidis MC58] COG0132 Dethiobiotin synthetase; BioD putative dethiobiotin synthetase	Dethiobiotin synthase	Code: H; COG: COG0132 dethiobiotin synthetase	Dethiobiotin synthase	dethiobiotin synthase	dethiobiotin synthase	
HELPY00027	Conserved hypothetical secreted protein	Putative	Similar to: HI0453, Y453_HAEIN conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein	hypothetical protein	protein of unknown function DUF1523 PFAM: protein of unknown function DUF1523: (1.1e-18) KEGG: sil:SPO3320 hypothetical protein, ev=1e-84, 68% identity	hypothetical protein	Hypothetical protein	conserved hypothetical protein similar to HP0028 Specificity unclear	protein of unknown function DUF1523 PFAM: protein of unknown function DUF1523 KEGG: rsp:RSP_1760 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00029	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00030	Uncharacterized protein HP_0031	Hypothetical protein JHP0027	hypothetical protein	conserved hypothetical protein Hypothetical protein similar to HP0031/JHP0027 High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00031	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS	hypothetical protein	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS 2	ATP-dependent Clp protease adapter protein clpS	hypothetical protein	ATP-dependent Clp protease adapter protein clpS	Residues 1 to 106 of 106 are 100 pct identical to residues 1 to 106 of a 106 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286653.1 orf, conserved hypothetical protein	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS	Similar to ATP-dependent Clp protease adaptor protein ClpS hypothetical protein	conserved gene hypothetical protein	Similar to ATP-dependent Clp protease adaptor protein ClpS hypothetical protein	ATP-dependent Clp protease adapter protein clpS	identified by similarity to SP:Q9JZZ5; match to protein family HMM PF02617 conserved hypothetical protein	ATP-dependent Clp protease adaptor protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	putative cytoplasmic protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adapter protein clpS	ATP-dependent Clp protease adaptor protein clpS	ATP-dependent Clp protease adapter protein clpS	
HELPY00032	ATP-dependent C1p protease	ATP-dependent Clp protease, ATP-binding subunit ClpA	ATP-dependent Clp proteinase	ATP-dependent Clp protease, ATP-binding subunit	Probable atp-dependent protease (Atp-binding specificity subunit) protein	ATP-dependent Clp protease ATP-binding subunit ClpA	conserved gene ATP binding protease component ClpA	ATP-dependent Clp protease ATP-binding subunit ClpA	identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861 ATP-dependent Clp protease, ATP-binding subunit ClpA	ATP-dependent Clp protease, ATP-binding subunit	ATP-dependent Clp protease subunit	identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861 ATP-dependent Clp protease, ATP-binding subunit ClpA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent Clp protease subunit	ATP-dependent CLP protease ClpB	ATP-dependent Clp protease subunit	ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT	Putative ATP-dependent protease ATP-binding protein	ATP-dependent Clp protease ATP-binding subunit ClpA	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones	probable ATP-dependent protease	ATP-dependent Clp protease subunit	AAA ATPase, central region:Clp, N terminal	AAA ATPase, central region:Clp, N terminal	Best Blastp Hit: pir||D81153 ATP-dependent Clp proteinase, ATP-binding chain ClpA NMB0836 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226070|gb|AAF41247.1| (AE002436) ATP-dependent Clp protease, ATP-binding subunit ClpA [Neisseria meningitidis MC58] COG0542 ATPases with chaperone activity, ATP-binding putative ATP-dependent C1p protease	ATP-dependent Clp protease	Citation: Ekaza, E. et. al. (2000) Microbiology, 146:1605-1616. Chaperonin clpA/B	ATPase AAA-2	ATP-dependent clp protease ATP-binding (chaperone) start codon not provided	ATP-dependent Clp protease, ATP-binding subunit	
HELPY00033	Aspartate 1-decarboxylase	aspartate 1-decarboxylaseprecursor (aspartate alpha-decarboxylase)	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase precursor	Aspartate 1-decarboxylase	CDS_ID OB1763 aspartate 1-decarboxylase	similar to AF116184-1|AAD28430.1| percent identity: 88 in 136 aa aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase	SCBAC19F3.05c, L-aspartate-alpha-decarboxylase, len: 139 aa: similar to many e.g. SW:P31664 (PAND_ECOLI) L-aspartate-alpha-decarboxylase PanD from Escherichia coli (126 aa) fasta scores; opt: 391, Z-score: 469.1, 50.877% identity (50.877% ungapped) in 114 aa overlap and SW:O06281 (PAND_MYCTU) aspartate 1-decarboxylase PanD from Mycobacterium tuberculosis (139 aa) fasta scores; opt: 572, Z-score: 677.0, 74.167% identity (74.167% ungapped) in 120 aa overlap. Contains Pfam match to entry PF02261 Asp_decarbox, Aspartate decarboxylase. L-aspartate-alpha-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Residues 1 to 122 of 122 are 100 pct identical to residues 5 to 126 of a 126 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285827.1 aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase	similar to aspartate 1-decarboxylase hypothetical protein	conserved gene aspartate-1-decarboxylase	similar to aspartate 1-decarboxylase hypothetical protein	Aspartate 1-decarboxylase	identified by similarity to EGAD:37749; match to protein family HMM PF02261; match to protein family HMM TIGR00223 aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase precursor	identified by match to protein family HMM PF02261; match to protein family HMM TIGR00223 aspartate 1-decarboxylase	Aspartate 1-decarboxylase	Aspartate 1-decarboxylase	
HELPY00034	UPF0133 protein HP_0035	UPF0133 protein HH_0332	Hypothetical UPF0133 protein JHP0031	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103	conserved hypothetical protein similar to HP0035/JHP0031 High confidence in function and specificity	conserved hypothetical protein TIGR00103 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	UPF0133 protein Ccur92_18190	UPF0133 protein Ccon26_18480	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	UPF0133 protein HPP12_0031	Putative uncharacterized protein	
HELPY00035	Putative uncharacterized protein	Putative uncharacterized protein	Putative	PDZ/DHR/GLGF	hypothetical protein	PDZ domain protein	conserved hypothetical protein similar to HP0036 hypothetical protein	PDZ domain protein	PDZ domain protein	PDZ domain protein	PDZ domain protein	PDZ domain protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00036	NADH-ubiquinone oxidoreductase subunit	NADH-ubiquinone oxidoreductase subunit	putative similar to JHP0033 Function unclear	NADH-ubiquinone oxidoreductase subunit	NADH-ubiquinone oxidoreductase subunit	ComB6 competence protein	
HELPY00037	Putative uncharacterized protein	comB8 competence protein	ComB1 protein (Q9ZDN8) Hypothetical protein RP289 Function unclear	VirB8 identified by match to protein family HMM PF04335	ComB8 competence protein	Competence protein	ComB8 competence protein	

HELPY00039	Putative uncharacterized protein	comB9 competence protein	ComB2 protein (P17799) VirB9 protein precursor High confidence in function and specificity	ComB9 competence protein	Competence protein	ComB9 competence protein	

HELPY00041	TrbI protein	comB10 competence protein	ComB3 protein (P55406) Probable conjugal transfer protein trbI High confidence in function and specificity	ComB10 competence protein	Conjugal transfer protein TrbI	Competence protein	ComB10 competence protein	jgi|Capca1|204012|fgenesh1_pg.C_scaffold_6265000002	
HELPY00042	Mannose-6-phosphate isomerase (Pmi) or	Mannose-1-phosphate guanylyltransferase	Mannose-6-phosphate isomerase	Mannose-1-phosphate guanylyltransferase	bifunctional mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase	Highly similar to mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase hypothetical protein	conserved gene phosphomannose isomerase GDP mannose pyrophosphorylase	Highly similar to mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase hypothetical protein	mannose-1-phosphate guanylyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phosphomannose isomerase; GDP-mannose pyrophosphorylase	Putative uncharacterized protein	Phosphomannose isomerase	Phosphomannose isomerase/GDP-mannose pyrophosphorylase	Mannose-1-phosphate guanylyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme bifunctional protein [Includes: Mannose-6-phosphate isomerase (Phosphomannose isomerase) (Pmi) (Phosphohexomutase); Mannose-1-phosphate guanylyl transferase (Gdp) (GDP-mannose pyrophosphorylase) (Gmp)]	Mannose-1-phosphate guanylyltransferase/mannose-6 -phosphate isomerase	putative mannose-1-phosphate guanylyltransferase	phosphomannose isomerase/GDP-mannose pyrophosphorylase	identified by similarity to SP:P29956; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase	Bifunctional mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase	identified by similarity to SP:P24174; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	mannose-1-phosphate guanylyltransferase (GDP)	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9860175, 10200953; Product type e : enzyme putative mannose-1-phosphate guanyltransferase, colanic acid synthesis	mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase	Mannose-1-phosphate guanylyltransferase	
HELPY00043	GDP-D-mannose dehydratase	GDP-mannose dehydratase	GDP-mannose 4,6-dehydratase (nodulation protein NoeL)	GDP-D-mannose dehydratase	GDP-mannose 46-dehydratase	GDP-D-mannose dehydratase	GmdA	GDP-D-mannose dehydratase gmdA	GDP-D-mannose dehydratase	similar to BR0522, GDP-mannose 4,6-dehydratase Gmd, GDP-mannose 4,6-dehydratase	GDP-D-mannose dehydratase	GDP-D-mannose dehydratase	GDP-mannose 4,6-dehydratase	Identical to previously sequenced Bacteroides fragilis Gmd GDP-mannose 4,6-dehydratase SWALL:Q8VU13 (EMBL:AF285774) (357 aa) fasta scores: E(): 7.8e-142, 100% id in 357 aa, and similar to Bacteroides thetaiotaomicron GDP-mannose 4,6-dehydratase BT1224 SWALL:Q8A8E3 (EMBL:AE016931) (356 aa) fasta scores: E(): 5.9e-132, 93.25% id in 356 aa, and to Porphyromonas gingivalis W83 GDP-mannose 4,6-dehydratase Gmd or PG1288 SWALL:AAQ66366 (EMBL:AE017176) (361 aa) fasta scores: E(): 6.4e-118, 83.9% id in 348 aa putative GDP mannose 4,6-dehydratase	Nucleoside-diphosphate-sugar epimerase	go_function: GDP-mannose 4,6-dehydratase activity [goid 0008446]; go_process: polysaccharide biosynthesis [goid 0000271] GDP-mannose 4,6 dehydratase, putative	GDP-mannose 4,6-dehydratase	Short-chain dehydrogenase/reductase SDR:GDP-mannose 4,6-dehydratase	GDP-mannose 4,6 dehydratase	GDP-mannose 4,6-dehydratase	GDP-mannose 4,6-dehydratase	GDP-mannose 4,6-dehydratase	GDP-mannose 4,6-dehydratase	predicted GDP-D-mannose dehydratase COG1089, pfam01370	GDP-mannose 4,6-dehydratase	putative GDP-mannose 4,6-dehydratase similarity:fasta; SWALL:NOEL_RHISN (SWALL:P55354); Rhizobium sp.; GDP-mannose 4,6-dehydratase; Noel or y4aG; length 351 aa; 344 aa overlap; query 4-347 aa; subject 3-346 aa	GDP-mannose 4,6-dehydratase	
HELPY00044	Nodulation protein	similar to GDP-fucose synthetase	Bme10	GDP-L-fucose synthetase(Nodulation protein NolK)	GDP-L-fucose synthase	Nucleoside-diphosphate-sugar epimerase	Gdp-l-fucose synthetase	Residues 1 to 321 of 322 are 98 pct identical to residues 1 to 321 of a 321 aa protein from Escherichia coli K12 ref: NP_416556.1 putative nucleotide di-P-sugar epimerase or dehydratase	GDP-fucose synthetase NAD dependent epimerase/dehydratase	NAD dependent epimerase/dehydratase	identified by similarity to SP:P32055 GDP-L-fucose synthetase	EpiA	Probable nucleotide-sugar epimerase epiA	bifunctional protein in colanic acid biosyntheis GDP fucose synthetase	similar to Salmonella typhi Ty2 GDP-fucose synthetase GDP-fucose synthetase	Putative uncharacterized protein	Putative SUGAR NUCLEOTIDE BIOSYNTHESIS	Fcl protein	GDP-L-fucose synthetase	Similar to Escherichia coli GDP-L-fucose synthetase Fcl or WcaG or B2052 SWALL:FCL_ECOLI (SWALL:P32055) (321 aa) fasta scores: E(): 9.6e-39, 47.6% id in 355 aa, and identical to previously sequenced Bacteroides fragilis GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase fcl SWALL:Q8VU14 (EMBL:AF285774) (360 aa) fasta scores: E(): 5.4e-147, 100% id in 360 aa, and similar to Bacteroides thetaiotaomicron GDP-fucose synthetase BT1225 SWALL:AAO76332 (EMBL:AE016931) (356 aa) fasta scores: E(): 1.8e-132, 89.85% id in 355 aa putative GDP-L-fucose synthetase	Bifunctional GDP fucose synthetase	identified by similarity to GP:18266408 NAD-dependent epimerase/dehydratase family protein	substrain RIMD 0509952 GDP-fucose synthetase chain A	NAD-dependent epimerase/dehydratase	Code: MG; COG: COG0451 putative nucleotide di-P-sugar epimerase or dehydratase	GDP-fucose synthetase	NAD-dependent epimerase/dehydratase	Citation: Rizzi, M. et. al. (1998) Structure, 6: 1453-1465. putative nucleotide di-P-sugar epimerase or dehydratase	
HELPY00046	Hydrogenase expression/formation protein	Plays structural role in maturation of all 3 hydrogenases	Hydrogenase expression/formation protein hypE	Hydrogenase formation factor	Hydrogenase maturation factor	Residues 15 to 336 of 336 are 99 pct identical to residues 1 to 322 of a 322 aa protein from Escherichia coli O157:H7 ref: NP_311613.1 HypE protein	Hydrogenase expression/formation protein HypE	conserved gene hydrogenase expression/formation protein HypE	Hydrogenase expression/formation protein HypE	hydrogenase expression/formation protein HypE	identified by similarity to SP:P40595; match to protein family HMM PF00586; match to protein family HMM PF02769 hydrogenase expression/formation protein HypE	IPR000728: AIR synthase related protein putative hydrogenase expression/formation protein	similar to Salmonella typhi CT18 hydrogenase isoenzymes formation protein HypE hydrogenase isoenzymes formation protein HypE	Hydrogenase isoenzymes formation protein	HYDROGENASE EXPRESSION/FORMATION PROTEIN	Hydrogenase maturation factor HypE protein	Putative hydrogenase expression/formation protein	[NiFe] hydrogenase metallocenter assembly protein HypE	identified by similarity to SP:P40595 hydrogenase expression/formation protein HypE	Hydrogenase expression/formation protein HypE	plays structural role in maturation of all 3 hydrogenases; Code: O; COG: COG0309 HypE	hydrogenase expression/formation protein HypE	identified by similarity to SP:P42034; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 hydrogenase expression/formation protein HypE	hydrogenase expression/formation protein	hydrogenase expression/formation protein HypE	plays structural role in maturation of all 3 hydrogenases; Code: O; COG: COG0309 HypE	Hydrogenase expression/formation protein HypE	Hydrogenase expression/formation protein HypE	Hydrogenase expression/formation protein HypE	
HELPY00047	Transcriptional regulator	Transcriptional regulatory protein	Hydrogenase maturation protein hypF	Hydrogenase maturation factor	Hydrogenase maturation factor	Residues 17 to 766 of 766 are 97 pct identical to residues 1 to 750 of a 750 aa protein from Escherichia coli O157:H7 ref: NP_311595.1 transcriptional regulatory protein	hydrogenase maturation protein HypF	Hydrogenase maturation protein HypF	conserved gene hydrogenase maturation protein HypF	Hydrogenase maturation protein HypF	hydrogenase maturation protein HypF	identified by similarity to SP:Q02987; match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM TIGR00143 [NiFe] hydrogenase maturation protein HypF	IPR001792: Acylphosphatase; IPR004421: Hydrogenase maturation protein HypF; IPR006070: SUA5/yciO/yrdC, N-terminal;IPR006071: SUA5/yciO/yrdC hydrogenase maturation protein	similar to Salmonella typhi Ty2 hydrogenase maturation protein hydrogenase maturation protein	Putative TRANSCRIPTIONAL REGULATOR	[NiFe] hydrogenase maturation protein HypF	Hydrogenase maturation factor HypF protein	Hydrogenase maturation protein	[NiFe] hydrogenase metallocenter assembly protein HypF	Hydrogenase maturation protein HypF	identified by similarity to SP:O07451; match to protein family HMM TIGR00143 [NiFe] hydrogenase maturation protein HypF	Hydrogenase maturation protein HypF	Code: O; COG: COG0068 transcriptional regulatory protein	[NiFe] hydrogenase maturation protein HypF	identified by similarity to SP:P30131; match to protein family HMM PF00708; match to protein family HMM PF00814; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 hydrogenase maturation protein HypF	hydrogenase maturation protein	hydrogenase maturation factor F	Code: O; COG: COG0068 transcriptional regulatory protein	Hydrogenase maturation protein HypF	
HELPY00048	Putative uncharacterized protein	hypothetical protein	Putative agmatine deiminase	Putative agmatine deiminase	Putative agmatine deiminase	hypothetical protein	Putative uncharacterized protein	Putative agmatine deiminase	identified by match to protein family HMM PF04371 peptidyl-arginine deiminase family protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative agmatine deiminase	Putative uncharacterized protein	Conserved hypothetical protein	COG2957 peptidylarginine deiminase	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0876 SWALL:AAO75983 (EMBL:AE016929) (371 aa) fasta scores: E(): 9.9e-127, 80.05% id in 371 aa, and to Xylella fastidiosa conserved hypothetical protein PD1460 SWALL:AAO29304 (EMBL:AE012558) (363 aa) fasta scores: E(): 1.4e-59, 47.68% id in 346 aa putative deiminase	Agmatine deiminase	Similar to Q8KCB6 Hypothetical protein CT1508 from Chlorobium tepidum (347 aa). FASTA: opt: 742 Z-score: 939.4 E(): 2e-44 Smith-Waterman score: 837; 38.484 identity in 343 aa overlap PAD_porph is a possible virulence factor for P.  gingivalis: PMID: 10377098 ORF ftt0434 conserved hypothetical protein	Peptidyl-arginine deiminase related enzyme	conserved hypothetical protein	Peptidylarginine deiminase or related enzyme	identified by match to protein family HMM PF04371 peptidyl-arginine deiminase-like protein	identified by match to protein family HMM PF04371 peptidyl-arginine deiminase family protein	Porphyromonas-type peptidyl-arginine deiminase	Porphyromonas-type peptidyl-arginine deiminase	Putative uncharacterized protein	Evidence 4 : Homologs of previously reported genes of unknown function conserved protein of unknown function	
HELPY00049	Adenine specific DNA methyltransferase	Site-specific DNA-methyltransferase	Putative TYPE II DNA MODIFICATION ENZYME	Prophage MuMc02, DNA methyltransferase	adenine-specific methyltransferase DpnIIB-like modification methylase DpnIIB-like	adenine-specific methyltransferase	adenine specific DNA methyltransferase	DNA methylase N-4/N-6	Adenine-specific methyltransferase	adenine specific DNA methyltransferase, putative	Putative uncharacterized protein	Site-specific DNA-methyltransferase	Putative uncharacterized protein	Putative site-specific DNA-methyltransferase	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	Adenine specific DNA methyltransferase	DNA methylase	DNA methylase N-4/N-6 domain protein	Adenine specific DNA methyltransferase	putative DNA methylase	DNA methylase N-4/N-6 domain protein	Predicted methyltransferase	Putative uncharacterized protein	Adenine specific DNA methyltransferase	DNA methylase N-4/N-6 domain protein	Type II adenine methyltransferase	
HELPY00050	Cytosine-specific methyltransferase	Cytosine-specific methyltransferase	conserved gene modification methylase (Eco47II, Sau96I)	site-specific DNA methylase	DNA-cytosine methyltransferase	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0270 cytosine specific DNA methyltransferase	identified by sequence similarity; putative; ORF located using Blastx; COG0270 cytosine specific DNA methyltransferase	Best Blastp Hit: gb|AAC45838.1| (AF001598) 5-methylcytosine methyltransferase [Neisseria gonorrhoeae] COG0270 Site-specific DNA methylase dcm putative 5-methylcytosine methyltransferase	Cytosine-specific DNA methylase	DNA-cytosine methyltransferase	C-5 cytosine-specific DNA methylase	probable DNA (cytosine-5-)-methyltransferase protein Similar to OB3336 [Oceanobacillus iheyensis HTE831] Similar to swissprot:Q8EL95 Putative location:bacterial inner membrane Psort-Score: 0.1298; go_function: transferase activity [goid 0016740]; go_function: hydrolase activity [goid 0016787]; go_function: DNA binding [goid 0003677]; go_function: methyltransferase activity [goid 0008168]; go_process: DNA methylation [goid 0006306]	cytosine specific DNA methyltransferase	DNA-cytosine methyltransferase identified by similarity to SP:P20589; match to protein family HMM PF00145; match to protein family HMM TIGR00675	DNA-cytosine methyltransferase	site-specific DNA-methyltransferase (P09795) Modification methylase SinI (EC 2.1.1.37) (Cytosine-specific methyltransferase SinI) (M.SinI) hypothetical protein	modification methylase DdeI identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675	DNA-cytosine methyltransferase deleted EC_number 2.1.1.73 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675	DNA-cytosine methyltransferase	putative DNA-methyltransferase	DNA-cytosine methyltransferase	Site-specific DNA methylase	Putative 5-methylcytosine methyltransferase	DNA-cytosine methyltransferase	Site-specific DNA methylase	DNA-cytosine methyltransferase	DNA-cytosine methyltransferase	
HELPY00051	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00051	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00052	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00053	Cytosine-specific methyltransferase	Adenine/cytosine DNA methyltransferase	Adenine/cytosine DNA methyltransferase	
HELPY00054	Proline permease	Major sodium/proline symporter	CDS_ID OB1351 sodium:proline symporter	Probable sodium/proline symporter	identified by similarity to SP:P07117; match to protein family HMM PF00474; match to protein family HMM TIGR00813 sodium/proline permease	similar to Salmonella typhi CT18 sodium/proline symporter (proline permease) sodium/proline symporter (proline permease)	Sodium/proline symporter	Sodium/proline symporter	Similar to PUTP_ECOLI Sodium/proline symporter from E. coli (501 aa). FASTA: opt: 1536 Z-score: 1735.2 E(): 8.4e-89 Smith-Waterman score: 1536; 46.531identity in 490 aa overlap Sodium/proline permease	Na+/proline symporter	Sodium/proline symporter	sodium/proline symporter, proline permease	sodium/proline symporter	Code: ER; COG: COG0591 major sodium/proline symporter	Sodium/proline symporter	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3053649, 3302614, 1567896; Product type t : transporter major sodium/proline symporter (SSS family)	Code: ER; COG: COG0591 major sodium/proline symporter	putative sodium:proline symporter identified by similarity to PIR:T48676; match to protein family HMM PF00474	Sodium/proline symporter	Sodium/proline symporter	Sodium/proline symporter	Sodium/proline symporter	sodium/proline symporter	Sodium/proline symporter	Sodium/proline permease Similar to PUTP_ECOLI Sodium/proline symporter from E. coli (501 aa). FASTA: opt: 1536 Z-score: 1735.2 E(): 8.4e-89 Smith-Waterman score: 1536; 46.531identity in 490 aa overlap	Sodium/proline symporter precursor	Sodium/proline symporter	sodium/proline symporter identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121	sodium/proline symporter (P07117) Sodium/proline symporter (Proline permease) High confidence in function and specificity	
HELPY00055	Delta-1-pyrroline-5-carboxylate dehydrogenase	Proline dehydrogenase/delta-1-pyrroline-5- carboxylate dehydrogenase	NAD-dependent aldehyde dehydrogenases	PROLINE DEHYDROGENASE , DELTA-1-PYRROLINE-5- CARBOXYLATE DEHYDROGENASE	Proline dehydrogenase, P5C dehydrogenase	similar to AX064025-1|CAC25253.1| percent identity: 75 in 1172 aa putative proline dhydrogenase/1-pyrroline-5-carboxylate dehydrogenase	Putative bifunctional protein	Proline dehydrogenase	Proline dehydrogenase	Bifunctional PutA protein [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate	PutA protein	Proline dehydrogenase (Proline oxidase) , delta-1 -pyrroline-5-carboxylate dehydrogenase	similar to bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase) hypothetical protein	conserved gene proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase = bifunctional PutA protein	similar to bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase) hypothetical protein	identified by similarity to SP:P10503; match to protein family HMM PF00171; match to protein family HMM PF01619; match to protein family HMM TIGR01238 bifunctional PutA protein	Proline dehydrogenase	identified by similarity to SP:P09546; match to protein family HMM PF00171; match to protein family HMM PF01619 bifunctional putA protein, putative	Proline 1-pyrroline-5-carboxylate dehydrogenase/proline dehydrogenase protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark bifunctional PutA protein	IPR002086: Aldehyde dehydrogenase putative periplasmic protein	Proline dehydrogenase, P5C dehydrogenase, PutA ortholog	similar to Salmonella typhi CT18 proline dehydrogenase (proline oxidase) proline dehydrogenase (proline oxidase)	Putative uncharacterized protein	similar to BRA0722, identified by similarity to GB:AAL53806.1; EMB:CAC41903.1; GB:AAL44957.1; proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase	Bifunctional PutA protein	Proline/pyrroline-5-carboxylate dehydrogenase	Bifunctional PutA protein [includes: proline dehydrogenase an...	Proline dehydrogenase	
HELPY00056	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY00057	Putative uncharacterized protein	Putative	best blastp match gb|AAB03086.1| (U29585) emm18.1 gene product [Streptococcus pyogenes] M18 protein precursor	emm28 protein	hypothetical protein	hypothetical protein	M protein	M protein	transcript_id=ENSGACT00000024413	hypothetical protein	hypothetical protein identified by Glimmer2; putative	conserved hypothetical protein	conserved hypothetical protein This CDS contains a repetitive region MSEVKQUE(INVL)/(MTVK)KED	Putative phosphoserine phosphatase	Chromosome segregation ATPase-like protein precursor	Putative uncharacterized protein	LPXTG-motif cell wall anchor domain	Putative uncharacterized protein	status:Predicted	Putative uncharacterized protein	pseudo	pseudo putative cell surface-anchored protein (fragment) Probable gene remnant. CDS lacks an N-terminal signal sequence which is required for processing of this cell surface-anchored protein. Similar to the C-terminus of Streptococcus pyogenes serotype M18 Streptococcal protective antigen Spa UniProt:Q8NZA4 (EMBL:AE010108 (570 aa) fasta scores: E()=9.3e-13, 44.062% id in 320 aa	pseudo putative cell surface-anchored protein (fragment) Probable gene remnant. CDS lacks an N-terminal signal sequence required for the processing of this protein	
HELPY00058	Putative uncharacterized protein	
HELPY00059	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00060	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00061	Putative uncharacterized protein	hypothetical protein	
HELPY00062	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00063	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00064	Conserved hypothetical ATP-binding protein	conserved ATP-binding protein	Hypothetical conserved protein	
HELPY00065	Urease accessory protein ureH	Urease accessory protein ureD	urease accessory protein	Urease accessory protein UreD	Urease accessory protein ureH	Urease accessory protein ureH	Ortholog of S. aureus MRSA252 (BX571856) SAR2378 urease accessory protein UreD	Similar to: HI0535, UREH_HAEIN urease accessory protein UreH	urease accessory protein	identified by similarity to SP:O06704; match to protein family HMM PF01774 urease accessory protein UreD	Urease accessory protein UreD	Urease accessory protein UreD	Similar to Bacillus sp urease accessory protein UreD SW:URED_BACSB (Q07400) (271 aa) fasta scores: E(): 1.8e-32, 34.19% id in 272 aa, and to Ureaplasma urealyticum urease complex component UreD TR:Q9FA29 (EMBL:AF085731) (287 aa) fasta scores: E(): 2.4e-26, 29.13% id in 278 aa urease accessory protein UreD	urease accessory protein	identified by similarity to EGAD:7142; match to protein family HMM PF01774 urease accessory protein UreD	similar to gi|57286412|gb|AAW38506.1| [Staphylococcus aureus subsp. aureus COL], percent identity 66 in 277 aa, BLASTP E(): e-112 urease accessory protein UreD	Pfam01774. COG0829: Urease accessory protein UreH.  Citation: Masepohl B, Kaiser B, Isakovic N, Richard CL, Kranz RG, Klipp W. J Bacteriol. (2001) 183(2):637-43. Urease accessory protein UreD	putative urease accessory protein UreD	urease accessory protein UreD identified by match to protein family HMM PF01774	Urease accessory protein UreD	urease accessory protein	putative urease accessory protein similarity:fasta; with=UniProt:URED_RHIME (EMBL:SME591790); Rhizobium meliloti (Sinorhizobium meliloti).; ureD; Urease accessory protein ureD.; length=277; id 64.599; 274 aa overlap; query 5-273; subject 4-277 similarity:fasta; with=UniProt:Q8RPY8_RHILV (EMBL:AF347070); Rhizobium leguminosarum (biovar viciae).; ureD; UreD.; length=273; id 93.407; 273 aa overlap; query 1-273; subject 1-273	Urease accessory protein UreD	urease accessory protein	Urease accessory protein UreD	urease accessory protein UreH	urease accessory protein UreD, putative	Urease accessory protein UreD PFAM: Urease accessory protein UreD KEGG: bur:Bcep18194_A4009 urease accessory protein UreD	urease accessory protein	
HELPY00066	Urease accessory protein ureG	Urease accessory protein ureG	Urease accessory protein UreG	Urease accessory protein ureG	similar to AP003136-251|BAB43385.1| percent identity: 69 in 200 aa urease accessory protein UreG	urease accessory protein G	Urease accessory protein ureG	Urease accessory protein ureG	Urease accessory protein ureG	2SCG1.07c, ureG, urease accessory protein, len: 225 aa; similar to SW:UREG_MYCTU (EMBL:U33011) Mycobacterium tuberculosis urease accessory protein UreG, 224 aa; fasta scores: opt: 900 z-score: 1007.7 E(): 0; 65.6% identity in 218 aa overlap. Contains Pfam match to entry PF01495 HypB_UreG, HypB/UreG nucleotide-binding domain and match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) urease accessory protein	Urease accessory protein ureG	Urease accessory protein ureG	Urease accessory protein ureG	Urease accessory protein ureG	identified by similarity to EGAD:6421; match to protein family HMM PF01495; match to protein family HMM TIGR00101 urease accessory protein UreG	Urease accessory protein ureG	identified by match to protein family HMM PF01495; match to protein family HMM TIGR00101 urease accessory protein UreG	urease accessory protein	Urease accessory protein UreG	Urease accessory protein ureG	Urease accessory protein ureG	Mb1883, ureG, len: 224 aa. Equivalent to Rv1852, len: 224 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 224 aa overlap). ureG, urease accessory protein. Identical to UREG_MYCTU|P50051 from M.  tuberculosis. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE UREG FAMILY. Urease accessory protein ureG	Urease accessory protein ureG	Urease accessory protein ureG	urease accessory protein UreG	Urease accessory protein ureG	Urease accessory protein ureG	Ortholog of S. aureus MRSA252 (BX571856) SAR2377 urease accessory protein UreG	urease accessory protein UreG	
HELPY00067	Urease accessory protein ureF	Urease accessory protein UreF	UREASE ACCESSORY PROTEIN UREF	similar to D14439-5|BAA03327.1| percent identity: 37 in 224 aa urease accessory protein UreF	Urease accessory protein ureF	Urease accessory protein	Urease accessory protein ureF	Urease accessory protein ureF	Urease accessory protein ureF	identified by similarity to EGAD:8726; match to protein family HMM PF01730 urease accessory protein UreF	Urease accessory protein ureF	identified by match to protein family HMM PF01730 urease accessory protein UreF	urease accessory protein	Urease accessory protein UreF	Urease accessory protein	Urease accessory protein UreF	similar to BR1360, urease accessory protein UreF, hypothetical hypothetical urease accessory protein UreF	urease accessory protein UreF	Urease accessory protein ureF	Ortholog of S. aureus MRSA252 (BX571856) SAR2376 urease accessory protein UreF	urease accessory protein UreF	Citation: Palinska et al. (2002) Microbiology 146:3099-3107 urease accessory protein ureF	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism urease accessory protein	urease accessory protein UreF	Similar to: HI0537, UREF_HAEIN urease accessory protein UreF	urease accessory protein	ortholog to Escherichia coli bnum: ECs1326; MultiFun: Metabolism1.1.4.4 putative urease accessory protein F	identified by similarity to SP:P18318; match to protein family HMM PF01730 urease accessory protein UreF	identified by match to protein family HMM PF01730 urease accessory protein UreF	
HELPY00068	Urease accessory protein ureE	Urease accessory protein ureE	Urease accessory protein ureE	identified by similarity to EGAD:8368; match to protein family HMM PF02814; match to protein family HMM PF05194 urease accessory protein UreE	Urease accessory protein ureE	Urease accessory protein UreE	Urease accessory protein ureE	urease accessory protein UreE	Urease accessory protein ureE	Ortholog of S. aureus MRSA252 (BX571856) SAR2375 urease accessory protein UreE	urease accessory protein UreE	uimilar to to: HI0538, UREE_HAEIN Urease accessory protein UreE	Similar to Bacillus sp urease accessory protein UreE SW:UREE_BACSB (Q07401) (148 aa) fasta scores: E(): 1.2e-32, 61.33% id in 150 aa, and to Ureaplasma urealyticum urease complex component UreE TR:Q9ETE2 (EMBL:AF085729) (149 aa) fasta scores: E(): 3.4e-20, 46.15% id in 143 aa urease accessory protein UreE	identified by similarity to EGAD:8368; match to protein family HMM PF02814; match to protein family HMM PF05194 urease accessory protein UreE	similar to gi|27468782|ref|NP_765419.1| [Staphylococcus epidermidis ATCC 12228], percent identity 88 in 150 aa, BLASTP E(): 5e-73 urease accessory protein UreE	urease accessory protein UreE identified by match to protein family HMM PF02814; match to protein family HMM PF05194	urease accessory protein	urease accessory protein UreE	urease accessory protein UreE, putative	(Q9ZMZ5) Urease accessory protein ureE High confidence in function and specificity	UreE urease accessory-like protein	Urease accessory protein ureE	Urease accessory protein UreE	Urease accessory protein UreE	Urease accessory protein UreE	Urease accessory protein	UreE urease accessory domain protein	UreE urease accessory domain protein PFAM: UreE urease accessory domain protein KEGG: sao:SAOUHSC_02562 urease accessory protein UreE, putative	UreE urease accessory domain protein PFAM: UreE urease accessory domain protein domain protein; UreE urease accessory domain protein	
HELPY00069	Acid-activated urea channel	similar to Z46523-1|CAA86569.1| percent identity: 35 in 180 aa conserved hypothetical protein	urease accessory protein, putatuve transport protein	Urease accessory protein UreI	Acid-activated urea channel	urea channel	transporter; possible acetamide transporter	AmiS/UreI transporter	urease accessory protein/pH-dependent urea-transporter UreI	Urea transporter	Urease accessory protein High confidence in function and specificity	AmiS/UreI transporter PFAM: AmiS/UreI transporter KEGG: nfa:nfa7570 putative transporter	AmiS/UreI transporter PFAM: AmiS/UreI transporter KEGG: bbr:BB1404 putative transporter protein	Amidate substrates transporter protein	Putative transporter protein amiS	acetamide transporter	Urease accessory protein UreI	Amidate substrates transporter protein	AmiS/UreI transporter	AmiS/UreI transporter precursor	AmiS/UreI transporter	AmiS/UreI transporter	Urea transporter	putative transporter protein AmiS	Urease accessory protein , pH-dependent urea- transporter	AmiS/UreI transporter	Putative transporter	Putative uncharacterized protein	Putative transporter	
HELPY00070	Urease subunit beta	Urease subunit alpha	Urease subunit alpha 1	Urease subunit alpha	similar to Y13732-6|CAA74065.1| percent identity: 64 in 571 aa urease alpha subunit	urease alpha subunit	Urease subunit alpha	Urease subunit alpha	Urease	Urease subunit alpha	Urease subunit alpha	identified by similarity to EGAD:98226; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792 urease, alpha subunit	Urease subunit alpha	identified by match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792 urease, alpha subunit	urea amidohydrolase (urease) alpha subunit	Urease alpha subunit	Urease	Urease subunit alpha	Urease subunit beta	similar to BR0270, urease, alpha subunit UreC-1, urease, alpha subunit	urease alpha subunit	Urease beta subunit	Ortholog of S. aureus MRSA252 (BX571856) SAR2374 urease alpha subunit	urease alpha subunit	Citation: Palinska et al. (2000) Microbiology 146:3099-3107 Urease alpha subunit	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme urease alpha subunit	urease alpha subunit	Urea amidohydrolase; uimilar to to: HI0539, URE1_HAEIN Urease alpha subunit	Urease subunit alpha	
HELPY00071	Urease subunit alpha	Urease subunit alpha	Urease alpha subunit	Urease, beta subunit:Urease, gamma subunit	urease A	urea amidohydrolase (urease) gamma subunit and beta subunit fusion	urease alpha subunit High confidence in function and specificity	Urease gamma (N-terminal) and beta (C-terminal) subunits	Urease gamma and beta subunits	Urease beta/gamma subunit	Urease beta subunit	Fusion of urease beta and gamma subunits	Urease, beta/gamma subunit	Urease, gamma subunit	Urease, gamma subunit	Urease, gamma subunit	urease, beta subunit TIGRFAM: urease, beta subunit; urease, gamma subunit PFAM: Urease, beta subunit; Urease, gamma subunit region KEGG: psb:Psyr_2198 urease, beta subunit:urease, gamma subunit	Urease, gamma subunit	Urease, gamma subunit	Urease, gamma subunit	Bifunctional urease subunit gamma/beta	Urease, gamma subunit	Urease A	Urease gamma/beta subunit	Urease, gamma subunit	Urease subunit alpha	Fusion of urease beta and gamma subunits	Urease subunit beta/gamma	Urease A subunit	
HELPY00072	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Residues 1 to 164 of 164 are 98 pct identical to residues 1 to 164 of a 164 aa protein from Escherichia coli K12 ref: NP_414568.1 prolipoprotein signal peptidase (SPase II)	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	conserved gene lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	identified by similarity to SP:P00804; match to protein family HMM PF01252; match to protein family HMM TIGR00077 lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	IPR001872: Peptidase A8, signal peptidase II prolipoprotein signal peptidase (SPase II)	similar to Salmonella typhi CT18 lipoprotein signal peptidase lipoprotein signal peptidase	Similar to Chlamydia pneumoniae lipoprotein signal peptidase LspA or cpn0535 or cp0217 SWALL:LSPA_CHLPN (SWALL:Q9Z817) (168 aa) fasta scores: E(): 1.7e-33, 63.56% id in 129 aa, and to Escherichia coli lipoprotein signal peptidase LspA SWALL:BAB96596 (EMBL:X00776) (164 aa) fasta scores: E(): 1.2e-05, 33.63% id in 110 aa putative lipoprotein signal peptidase	Lipoprotein signal peptidase	similar to BR0149, lipoprotein signal peptidase LspA, lipoprotein signal peptidase	Lipoprotein signal peptidase	
HELPY00073	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	CDS_ID OB0232; glycolysis phosphoglucomutase	similar to AL031317-14|CAA20392.1| percent identity: 62 in 448 aa putative phospho-sugar mutase	Phosphoglucosamine mutase	phosphoglucomutase/phosphomannomutase family protein MrsA	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucomutase /phosphomannomutasefamily protein mrsa	Residues 1 to 445 of 445 are 98 pct identical to residues 1 to 445 of a 445 aa protein from Escherichia coli K12 ref: NP_417643.1 similar to phosphoglucomutases and phosphomannomutases	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	phosphohexomutase	
HELPY00074	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	SCC123.01, rspT, 30s ribosomal protein S20, len: 88 aa. Highly similar to Bacillus subtilis SW:RS20_BACSU(EMBL:D84432) 30S ribosomal protein S20 (BS20) (87 aa), fasta scores opt: 226 z-score: 298.8 E(): 3e-09 44.0% identity in 84 aa overlap and Mycobacterium tuberculosis SW:RS20_MYCTU(EMBL:Z81368) 30S ribosomal protein S20 (86 aa), fasta scores opt: 363 z-score: 465.7 E(): 1.5e-18 70.9% identity in 86 aa overlap. Contains a Pfam match to entry PF01649 Ribosomal_S20p, Ribosomal protein S20. 30s ribosomal protein S20.	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein s20	30S ribosomal protein S20	30s ribosomal protein S20	30S ribosomal protein S20	identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029 ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029 ribosomal protein S20	30S ribosomal protein S20	Ribosomal protein S20	30S ribosomal protein S20	Mb2435, rpsT, len: 86 aa. Equivalent to Rv2412, len: 86 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 86 aa overlap). Probable rpsT, 30s ribosomal protein s20, equivalent to O33132|RS20_MYCLE|L0604|MLCL536.06 30S RIBOSOMAL PROTEIN S20 from Mycobacterium leprae (86 aa), FASTA scores: opt: 456, E(): 4.6e-24, (87.20% identity in 86 aa overlap).  Also highly similar or similar to others e.g.  Q9RDM3|RPST|SCC123.01 30S RIBOSOMAL PROTEIN S20 from Streptomyces coelicolor (88 aa), FASTA scores: opt: 363, E(): 7.1e-18, (70.95% identity in 86 aa overlap); Q9KD79|RPST|BH1339 RIBOSOMAL PROTEIN S20 (BS20) from Bacillus halodurans (91 aa), FASTA scores: opt: 252, E(): 1.8e-10, (49.4% identity in 85 aa overlap); P02378|RS20_ECOLI 30s ribosomal protein s20 from Escherichia coli (86 aa), FASTA scores: opt: 210, E(): 1e-07, (42.4% identity in 85 aa overlap); etc. BELONGS TO THE S20P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S20 RPST	
HELPY00075	Peptide chain release factor 1	translation releasing factor RF-1	peptide chain release factor 1 (RF-1) in translation	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	CDS_ID OB2998 peptide chain release factor RF-1	Peptide chain release factor 1	similar to AL583920-193|CAC31515.1| percent identity: 63 in 355 aa putative peptide chain release factor 1	Peptide chain release factor 1	peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	
HELPY00075	Peptide chain release factor 1	translation releasing factor RF-1	peptide chain release factor 1 (RF-1) in translation	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	CDS_ID OB2998 peptide chain release factor RF-1	Peptide chain release factor 1	similar to AL583920-193|CAC31515.1| percent identity: 63 in 355 aa putative peptide chain release factor 1	Peptide chain release factor 1	peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	
HELPY00076	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00077	Outer membrane protein	outer membrane protein HorA	Outer membrane protein HorA	Outer membrane protein HorA	jgi|Capca1|212355|fgenesh1_pg.C_scaffold_3122000001	
HELPY00078	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00080	Methyl-accepting chemotaxis transducer	Methyl-accepting chemotaxis protein	identified by similarity to SP:P42258; match to protein family HMM PF00015 methyl-accepting chemotaxis protein	Putative uncharacterized protein	Methyl-accepting chemotaxis protein	methyl-accepting chemotaxis sensory transducer PFAM: histidine kinase, HAMP region: (7.9e-16) chemotaxis sensory transducer: (4.5e-59) KEGG: ret:RHE_CH03477 probable methyl-accepting chemotaxis protein, ev=5e-84, 32% identity	methyl-accepting chemotaxis protein	methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015	Methyl-accepting chemotaxis protein mcpB Function unclear	methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015	Methyl-accepting chemotaxis sensory transducer precursor	Methyl-accepting chemotaxis protein	Predicted methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis transducer	MCP-domain signal transduction protein	Probable methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis transmembrane sensory protein	Methyl-accepting chemotaxis protein	
HELPY00081	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	CDS_ID OB0152 30S ribosomal protein S9	30S ribosomal protein S9	similar to AL583918-48|CAC29873.1| percent identity: 59 in 159 aa putative 30S ribosomal protein S9	30S ribosomal protein S9	ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	
HELPY00082	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	CDS_ID OB0151 50S ribosomal protein L13	50S ribosomal protein L13	similar to AE007159-8|AAK47889.1| percent identity: 63 in 145 aa putative 50S ribosomal protein L13	Probable large subunit ribosomal protein L13	ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	
HELPY00083	Uncharacterized protein HP_0085	Hypothetical protein JHP0078	hypothetical protein	hypothetical protein predicted by Glimmer/Critica (O24912) Hypothetical protein HP0085/JHP0078 Conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00084	Malate:quinone oxidoreductase	Putative transcriptional regulator	CDS_ID OB0946 malate:quinone oxidoreductase	malate:quinone oxidoreductase, putative	Malate:quinone oxidoreductase	malate:quinone oxidoreductase	similar to gi|57285095|gb|AAW37189.1| [Staphylococcus aureus subsp. aureus COL], percent identity 72 in 491 aa, BLASTP E(): 0.0 putative malate:quinone oxidoreductase	Malate dehydrogenase	transcript_id=ENSGACT00000015674	malate:quinone oxidoreductase	FAD dependent oxidoreductase	malate:quinone oxidoreductase identified by match to protein family HMM PF01266; match to protein family HMM PF06039	malate dehydrogenase (acceptor) (O24913) Malate:quinone oxidoreductase (EC 1.1.99.16) (Malate dehydrogenase [acceptor]) (MQO) High confidence in function and specificity	Predicted dehydrogenase COG579 Predicted dehydrogenase [General function prediction only]	malate:quinone oxidoreductase, putative identified by match to protein family HMM PF01266; match to protein family HMM PF06039	possible oxidase or dehydrogenase	FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase KEGG: vpa:VPA0190 putative transcriptional regulator	Putative malate:quinone oxidoreductase	Malate dehydrogenase	Malate:quinone oxidoreductase	Putative malate:quinone oxidoreductase	Malate dehydrogenase	Malate:quinone oxidoreductase	jgi|Helro1|179569	Malate:quinone oxidoreductase	Malate:quinone oxidoreductase	Malate/quinone oxidoreductase	Putative transcriptional regulator	Malate:quinone oxidoreductase	
HELPY00085	Putative uncharacterized protein	putative cell wall-associated hydrolase	similar to Salmonella typhi CT18 putative exported protein putative exported protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative cell wall-associated hydrolase	conserved hypothetical protein	Putative uncharacterized protein	NLP/P60	unknown	hypothetical protein	conserved hypothetical protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	NLP/P60 precursor	cell wall-associated hydrolase	lipoprotein, NLP/P60 family	conserved hypothetical protein Putative exported protein Conserved hypothetical protein	Putative cell wall-associated hydrolase protein	NlpC/P60 family protein identified by match to protein family HMM PF00877	lipoprotein, putative	NLP/P60 protein precursor	NLP/P60 protein PFAM: NLP/P60 protein KEGG: sat:SYN_01955 cell wall-associated hydrolase	Putative uncharacterized protein	Putative lipoprotein	NLP/P60 protein precursor	Lipoprotein, putative	Putative uncharacterized protein	NLP/P60 protein precursor	Putative uncharacterized protein	
HELPY00086	RNA polymerase sigma factor rpoD	RNA POLYMERASE SIGMA FACTOR RPOD	RNA polymerase sigma factor	RNA polymerase sigma subunit	RNA polymerase sigma factor rpoD	RNA polymerase sigma factor	RNA polymerase sigma factor rpod	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor rpoD (Sigma-70)	conserved gene RNA polymerase sigma 70 factor (RpoD)	RNA polymerase sigma factor rpoD (Sigma-70)	identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545 RNA polymerase sigma-70 factor RpoD	RNA polymerase sigma factor	identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546 RNA polymerase sigma factor RpoD	RNA polymerase sigma factor	DNA-directed RNA polymerase sigma 70 subunit, RpoD	RNA polymerase sigma factor	similar to BR1479, RNA polymerase sigma-70 factor RpoD, RNA polymerase sigma-70 factor	RNA polymerase sigma factor	RNA polymerase sigma factor rpoD	RNA polymerase sigma factor	Similar to sp|P33451|RPSD_RICPR sp|P33452|RPSD_AGRT5 sp|Q59753|RPSD_RHIME sp|P52324|RPSD_CAUCR; Ortholog to ERGA_CDS_03350 RNA polymerase sigma factor rpoD	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type f : factor sigma D (sigma 70) factor of RNA polymerase , major sigma factor during exponential growth	COG0568 RNA polymerase sigma-70 factor	RNA polymerase sigma factor RpoD	Sigma-70; Similar to: HI0533, RPSD_HAEIN RNA polymerase sigma factor RpoD	DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) RpoD protein	
HELPY00087	MTA/SAH nucleosidase	nucleoside phosphorylase ( 5'-methylthioadenosine nucleosidase ; S-adenosylhomocysteine nucleosidase )	Putative 5'-methylthioadenosine , S- adenosylhomocysteine nucleosidase	MTA/SAH nucleosidase	5`-methylthioadenosine/S-adenosylhomocysteine nuclosidase	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	Putative MTA/SAH nucleosidase	Putative 5'-methylthioadenosine/S- adenosylhomocysteine nuclosidase	MTA/SAH nucleosidase	Nucleoside phosphorylase	Nucleoside phosphorylase	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase	MTA/SAH nucleosidase	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	Probable bifunctional protein (Mta/sah nucleosidase) (P46): 5'-methylthioadenosine nucleosidase and s-adenosylhomocysteine nucleosidase	Methylthioadenosine nucleosidase; S- adenosylhomocysteine nucleosidase	S-adenosylhomocysteine nucleosidase 5'-methylthioadenosine nucleosidase	MTA/SAH nucleosidase (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase)	5-methylthioadenosine nucleosidase/S- adenosylhomocystein nucleosidase	identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704 MTA/SAH nucleosidase	MTA/SAH nucleosidase	Mb0094, mtn, len: 255 aa. Equivalent to Rv0091, len: 255 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 255 aa overlap). Probable mtn (alternate gene name: pfs), MTA/SAH nucleosidase, including 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) and S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), similar to others e.g. NP_521493.1|NC_003295 PROBABLE BIFUNCTIONAL PROTEIN (MTA/SAH NUCLEOSIDASE) (P46): 5'-METHYLTHIOADENOSINE NUCLEOSIDASE AND S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE from Ralstonia solanacearum (261 aa); AAC45731.1|U55214 Pfs from Treponema pallidum (249 aa); P96122|MTN_TREPA MTA/SAH NUCLEOSIDASE from Treponema pallidum (269 aa); PFS_ECOLI|P24247 pfs protein (p46) from Escherichia coli (232 aa), FASTA scores: opt: 214, E(): 3.8e-08, (30.5% identity in 246 aa overlap); etc. BELONGS TO THE MTN FAMILY. PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE	MTA/SAH nucleosidase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	COG0775 Nucleoside phosphorylase MTA-SAH nucleosidase	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	S-adenosylhomocysteine nucleosidase	Putative uncharacterized protein gbs1591	
HELPY00088	Malonyl coenzyme A-acyl carrier protein transacylase	MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE	Putative malonyl-CoA acyl-carrier-protein transacylase	Malonyl Coa-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase, putative	Malonyl CoA-acyl carrier protein transacylase	(Acyl-carrier-protein) S-malonyltransferase	Malonyl CoA-acyl carrier protein transacylase	MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE	Malonyl CoA-acyl carrier protein transacylase	Residues 1 to 309 of 309 are 99 pct identical to residues 1 to 309 of a 309 aa protein from Escherichia coli K12 ref: NP_415610.1 malonyl-CoA-[acyl-carrier-protein] transacylase	Malonyl CoA-Acyl Carrier Transacylase	Malonyl CoA-acyl carrier protein transacylase	FabD; malonyl CoA-acyl carrier protein transacylase	FabD protein	Malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	conserved gene S-malonyl transferase	Malonyl CoA-acyl carrier protein transacylase	malonyl coenzyme A-acyl carrier	Malonyl CoA-ACP transacylase	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 malonyl CoA-acyl carrier protein transacylase	InterProMatches:IPR004410; Molecular Function: [acyl-carrier protein] S-malonyltransferase activity (GO:0004314), Biological Process: fatty acid biosynthesis (GO:0006633) malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark malonyl CoA-ACP transacylase	Malonyl CoA-[acyl carrier protein] transacylase	malonyl-CoA-[acyl-carrier-protein] transacylase	similar to Salmonella typhi CT18 malonyl CoA-acyl carrier protein transacylase malonyl CoA-acyl carrier protein transacylase	
HELPY00089	Type II restriction enzyme R protein	Putative type II restriction endonuclease	identified by similarity to GP:15281347; match to protein family HMM PF04556 type II restriction endonuclease	putative type II restriction-modification system, restriction enzyme	Restriction endonuclease SsuRB, putative	Type II site-specific deoxyribonuclease	Type II site-specific deoxyribonuclease	Type II site-specific deoxyribonuclease	Restriction endonuclease R.IB	Type II restriction enzyme DpnII	Type II site-specific deoxyribonuclease	Type II site-specific deoxyribonuclease	Type II restriction enzyme DpnII	DpnII endonuclease	Type II restriction enzyme protein	Type II restriction enzyme R protein	Type II restriction enzyme	Type II restriction enzyme	Type II R-M system restriction endonuclease	DNA adenine methylase	Type II restriction enzyme	
HELPY00090	Type II restriction enzyme M protein	TYPE II DNA MODIFICATION ENZYME	Best Blastp Hit: sp|P09358|MT22_STRPN modification methylase DpnII 2 (adenine-specific methyltransferase DpnII 2) (M.DPNII 2) >gi|6978344|gb|AAA88581.2| (M14339) DNA adenine methyltransferase [Streptococcus pneumoniae] COG0863 Adenine-specific DNA methylase putative modification methylase	Putative adenine-specifique DNA methyltransferase	DNA methylase N-4/N-6 PFAM: DNA methylase N-4/N-6 KEGG: ade:Adeh_2855 DNA methylase N-4/N-6	type II adenine methyltransferase	DNA methyltransferase type II DNA modification enzyme (methyltransferase) [EC:2.1.1.72] High confidence in function and specificity	putative adenine-specific DNA methyltransferase identified by similarity to SP:P50178; match to protein family HMM PF01555	Modification methylase DpnIIB, putative	DNA methylase N-4/N-6	Putative Modification methylase DpnIIB	DNA methylase	DNA methylase N-4/N-6 domain protein	DNA methylase	DNA modification methylase	DNA methylase	DNA methylase	DNA methylase N-4/N-6 domain protein	Type II restriction enzyme M protein	DNA methylase N-4/N-6 domain protein	DNA adenine methyltransferase DpnII	TypeII adenine methyltransferase	Modification methylase, putative	DNA methylase	Site-specific DNA-methyltransferase	DNA methylase N-4/N-6 domain protein	Type II R-M system methyltransferase	M.HpyAIII, type II adenine methyltransferase	DNA methylase N-4/N-6 domain protein	


HELPY00093	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00094	Phosphoglycerate dehydrogenase	Glycerate dehydrogenase	Lactate dehydrogenase	Probable glycerate dehydrogenase	Putative uncharacterized protein	Putative keto-acid dehydrogenase	Similar to: HI1556, YF56_HAEIN putative 2-hydroxyacid dehydrogenase	Similar to Methylobacterium extorquens glycerate dehydrogenase HprA SWALL:DHGY_METEX (SWALL:Q59516) (313 aa) fasta scores: E(): 4.1e-39, 38.99% id in 318 aa, and to Bacteroides thetaiotaomicron glycerate dehydrogenase BT1207 SWALL:AAO76314 (EMBL:AE016930) (318 aa) fasta scores: E(): 9e-97, 73.89% id in 318 aa, and to Clostridium acetobutylicum possible phosphoglycerate dehydrogenase CAC2945 SWALL:Q97F10 (EMBL:AE007791) (324 aa) fasta scores: E(): 1.2e-61, 50.61% id in 324 aa putative glycerate dehydrogenase	Lactate dehydrogenase and related dehydrogenases LdhA protein	Glycerate dehydrogenase	identified by match to protein family HMM PF00389; match to protein family HMM PF02826 D-isomer specific 2-hydroxyacid dehydrogenase family protein	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	similar to Phosphoglycerate dehydrogenase and related dehydrogenases	Glycerate dehydrogenase	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	D-isomer specific 2-hydroxyacid dehydrogenase	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein	Glycerate dehydrogenase	putative D-2-hydroxyacid dehydrogenase	D-isomer specific 2-hydroxyacid dehydrogenase	glycerate dehydrogenase identified by match to protein family HMM PF00389; match to protein family HMM PF02826	possible 2-hydroxyacid dehydrogenase COG family: phosphoglycerate dehydrogenase andrelated dehydrogenases Orthologue of BL1568 PFAM_ID: 2-Hacid_DH_C	D-isomer specific 2-hydroxyacid dehydrogenase family protein	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding KEGG: bcn:Bcen_1211 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	
HELPY00095	Putative uncharacterized protein	Putative	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00096	Threonine synthase	THREONINE SYNTHASE	Putative threonine synthase	Threonine synthase	Threonine synthase	Threonine synthase	similar to AX063893-1|CAC25188.1| percent identity: 85 in 481 aa threonine synthase	threonine synthase	Threonine synthase, putative	Threonine synthase	Threonine synthase	Threonine synthase	Threonine synthase	Threonine synthase	Residues 1 to 428 of 428 are 99 pct identical to residues 1 to 428 of a 428 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285696.1 threonine synthase	ThrC; probable threonine synthase protein	Probable threonine synthase protein	Threonine synthase	similar to threonine synthase ThrC hypothetical protein	conserved gene threonine synthase	similar to threonine synthase ThrC hypothetical protein	Threonine synthase	identified by similarity to GB:CAA82670.1; match to protein family HMM PF00291; match to protein family HMM TIGR00260 threonine synthase	Threonine synthase	threonine synthase	identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260 threonine synthase	Threonine synthetase protein	Threonine synthase	ThrC COG0498 Threonine synthase threonine synthase	
HELPY00097	Methyl-accepting chemotaxis protein	methyl-accepting chemotaxis transmembrane sensory protein	Methyl-accepting chemotaxis protein Function unclear	Methyl-accepting chemotaxis sensory transducer with Cache sensor precursor	Methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis transmembrane sensory protein	Methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis transmembrane sensory protein	Putative methyl-accepting chemotaxis protein	
HELPY00098	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF02677	conserved hypothetical protein Function unclear	conserved hypothetical protein identified by match to protein family HMM PF02677	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	DNA polymerase III gamma and tau subunits	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00100	Putative uncharacterized protein	Glycosyl transferase	Exopolysaccharide biosynthesis	GLYCOSYL TRANSFERASE	Glycosyltransferase	Probable glycosyltransferase	probable glycosly transferase	Gsd protein	Mb2981, -, len: 275 aa. Equivalent to Rv2957, len: 275 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 275 aa overlap). Possible glycosyl transferase (EC 2.4.1.-); possibly secreted protein.  Highly similar to O88109|GSD|GTFD GSD PROTEIN from Mycobacterium avium subsp. silvaticum, Mycobacterium paratuberculosis, and Mycobacterium avium (266 aa), FASTA scores: opt: 1010, E(): 2.5e-62, (68.8% identity in 221 aa overlap). Also some similarity with other proteins and especially glycosyl transferases e.g. Q9AEE4 HYPOTHETICAL 31.4 KDA PROTEIN from Leptospira interrogans (265 aa), FASTA scores: opt: 371, E(): 3.3e-18, (34.43% identity in 212 aa overlap); Q9EXY4 PUTATIVE GLYCOSYL TRANSFERASE from Escherichia coli (248 aa), FASTA scores: opt: 339, E(): 5e-16, (32.4% identity in 210 aa overlap); Q9RCC4 GLYCOSYLTRANSFERASE-LIKE PROTEIN from Yersinia pestis (247 aa), FASTA scores: opt: 333, E(): 1.3e-15, (31.8% identity in 217 aa overlap); Q9EXY1 PUTATIVE GLYCOSYL TRANSFERASE from Escherichia coli (248 aa), FASTA scores: opt: 328, E(): 2.9e-15, (31.9% identity in 210 aa overlap); etc.  Equivalent to AAK47357 from Mycobacterium tuberculosis strain CDC1551 (256 aa) but longer 19 aa. POSSIBLE GLYCOSYL TRANSFERASE	IPR001173: Glycosyl transferase, family 2 putative transferase in colanic acid biosynthesis	similar to Salmonella typhi CT18 putative glycosyltransferase putative glycosyltransferase	Putative	Probable glycosyltransferase	Similar to previously sequenced Bacteroides fragilis putative glycosyl transferase wcfJ SWALL:Q9XDJ3 (EMBL:AF048749) (254 aa) fasta scores: E(): 2.6e-99, 100% id in 254 aa, and to Helicobacter pylori J99 putative jhp0094 SWALL:Q9ZMX1 (EMBL:AE001448) (260 aa) fasta scores: E(): 1.4e-42, 47.6% id in 250 aa, and to Helicobacter pylori hypothetical protein Hp0102 hp0102 SWALL:O24928 (EMBL:AE000532) (259 aa) fasta scores: E(): 7e-42, 46.98% id in 249 aa putative glycosyltransferase	Putative transferase	glycosyl transferase	Citation: Skurnik, M. et. al. (2000) Mol.Microbiol.  37: 316-330. Glycosyl transferase, family 2	Glycosyl transferase, family 2	conserved hypothetical protein	putative beta-glycosyltransferase putative glycosyltransferase similarity:fasta; with=UniProt:Q7WYS0 (EMBL:RLE571701); Rhizobium leguminosarum bv. viciae 3841.; Putative beta-glycosyltransferase.; length=258; id 100.000; 258 aa overlap; query 1-258; subject 1-258 similarity:fasta; with=UniProt:O34234 (EMBL:VCLPSS); Vibrio cholerae.; ORF39x2; Sugar transferase.; length=337; id 27.632; 228 aa overlap; query 1-220; subject 1-221	glycosyl transferase, family 2	conserved hypothetical protein	putative beta-glycosyltransferase protein similar to AF127522.1:1879..2709 [Rhizobium etli] Similar to entrez-protein:AAD47916.1 Putative location:bacterial cytoplasm Psort-Score: 0.2050	Glycosyl transferase, family 2	Glycosyl transferase, family 2	glycosyl transferase	Glycosyltransferase	hypothetical protein similarity to COG0463 Glycosyltransferases involved in cell wall biogenesis(Evalue: 2E-33)	Putative colanic acid biosynthesis glycosyl transferase	
HELPY00099	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Putative outer membrane protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00101	Methyl-accepting chemotaxis protein	Membrane associated chemotaxis sensory transducer protein	Putative methyl-accepting chemotaxis transducer transmembrane protein	Probable methyl-accepting chemotaxis protein	methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein	identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672 methyl-accepting chemotaxis protein, putative	methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis transducer	identified by match to protein family HMM PF00015; match to protein family HMM PF00672 methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015; match to protein family HMM PF00672 methyl-accepting chemotaxis protein	Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer	Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer	methyl-accepting chemotaxis sensory transducer	methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis sensory transducer	methyl-accepting chemotaxis sensory transducer	putative methyl-accepting chemotaxis chemoreceptor similarity:fasta; SWALL:Q9X6N1 (EMBL:AF141674); Rhizobium leguminosarum; putative chemotaxis chemoreceptor McpG; length 653 aa; 621 aa overlap; query 12-604 aa; subject 4-610 aa similarity:fasta; SWALL:Q8UHN4 (EMBL:AE009032); Agrobacterium tumefaciens; methyl-accepting chemotaxis protein A; mcpa or atu0646 or agr_c_1147; length 633 aa; 609 aa overlap; query 1-607 aa; subject 27-633 aa similarity:fasta; SWALL:O68016 (EMBL:AF010180); Agrobacterium tumefaciens; McpA; mcpA; length 579 aa; 294 aa overlap; query 297-589 aa; subject 250-543 aa	chemotaxis sensory transducer	Chemotaxis sensory transducer precursor	methyl-accepting chemotaxis protein	hypothetical protein similarity to COG0840 Methyl-accepting chemotaxis protein(Evalue: 2E-80)	Methyl-accepting chemotaxis sensory transducer precursor	methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis sensory transducer	Chemotaxis sensory transducer	methyl-accepting chemotaxis sensory transducer PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein KEGG: mag:amb2333 methyl-accepting chemotaxis protein	methyl-accepting chemotaxis sensory transducer	High confidence in function and specificity	
HELPY00102	2',3'-cyclic-nucleotide 2'-phosphodiesterase	Phosphatase/nucleotidase	2'-3'-cyclic-nucleotide 2'-phosphodiesterase	identified by match to protein family HMM PF00149; match to protein family HMM PF01009; match to protein family HMM PF02872 5'-nucleotidase family protein	hypothetical protein	Lactococcal phosphatase-like protein	hypothetical protein, similar to lactococcal phosphatase homologue	2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE	Ortholog of S. aureus MRSA252 (BX571856) SAR0147 putative nucleotidase	hypothetical protein, similar to lactococcal phosphatase homologue	Similar to Clostridium perfringens 2', 3'-cyclic nucleotide 2'-phosphodiesterase cpd SWALL:Q9XDU1 (EMBL:AB028630) (865 aa) fasta scores: E(): 6.3e-20, 26.3% id in 574 aa, and to Bacteroides thetaiotaomicron 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor BT1236 SWALL:AAO76343 (EMBL:AE016931) (580 aa) fasta scores: E(): 4.6e-199, 83.18% id in 577 aa. Possible alternative start site at codon 4 putative 2', 3'-cyclic nucleotide 2'-phosphodiesterase	2',3'-cyclic-nucleotide 2'-phosphodiesterase	Similar to Escherichia coli 2',3'-cyclic-nucleotide 2'-phosphodiesterase CpdB SW:CN16_ECOLI (P08331) (647 aa) fasta scores: E(): 5.4e-09, 25.279% id in 538 aa, and to Lactococcus lactis putative phosphatase YcjM TR:Q9CIQ3 (EMBL:AE006267) (519 aa) fasta scores: E(): 7.5e-74, 38.477% id in 512 aa putative nucleotidase	identified by match to protein family HMM PF00149; match to protein family HMM PF02872 5' nucleotidase family protein	5'-nucleotidase/2' 3'-cyclic phosphodiesterase	5' nucleotidase family protein identified by match to protein family HMM PF00149; match to protein family HMM PF02872	2',3'-cyclic-nucleotide 2'-phosphodiesterase	5'-Nucleotidase-like PFAM: metallophosphoesterase: (5.6e-14) 5'-Nucleotidase-like: (3.8e-21) KEGG: sil:SPO3542 2',3'-cyclic-nucleotide 2'-phosphodiesterase, putative, ev=1e-134, 44% identity	2',3'-cyclic-nucleotide 2'-phosphodiesterase	Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167	conserved hypothetical protein	2',3'-cyclic-nucleotide 2'-phosphodiesterase PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein KEGG: cac:CAC1963 5'-nucleotidase/2',3'-cyclic phosphodiesterase related enzyme	5'-Nucleotidase domain protein PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein KEGG: sit:TM1040_1036 twin-arginine translocation pathway signal	2`,3`-cyclic-nucleotide 2`-phosphodiesterase	2',3'-cyclic-nucleotide 2'-phosphodiesterase (P44764) 23-cyclic-nucleotide 2-phosphodiesterase precursor (EC 3.1.4.16) High confidence in function and specificity	2',3'-cyclic-nucleotide 2'-phosphodiesterase	Putative 2', 3'-cyclic nucleotide 2'- phosphodiesterase	Sulfur oxidation protein SoxB	5'-Nucleotidase domain protein precursor	
HELPY00103	S-ribosylhomocysteine lyase	autoinducer-2 production protein (AI-2 synthesis protein)	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	CDS_ID OB1107 autoinducer-2 production protein	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	Residues 1 to 171 of 171 are 99 pct identical to residues 1 to 171 of a 171 aa protein from Escherichia coli K12 ref: NP_417172.1 orf, conserved hypothetical protein	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	identified by similarity to OMNI:SA2126; match to protein family HMM PF02664 autoinducer-2 production protein LuxS	LuxS Autoinducer-2 production protein	autoinducer-2 production protein	S-ribosylhomocysteine lyase	identified by similarity to SP:P45578; match to protein family HMM PF02664 autoinducer-2 production protein LuxS	InterProMatches:IPR003815; Biological Process: quorum sensing (GO:0009372) autoinducer-2 production protein	S-ribosylhomocysteinase	LuxS autoinducer-2 production protein	S-ribosylhomocysteine lyase	S-ribosylhomocysteine lyase	IPR003815: LuxS protein quorum sensing protein, produces autoinducer-acyl-homoserine lactone-signaling molecules	
HELPY00104	Cystathionine gamma-synthase	CDS_ID OB1109 cystathionine beta-lyase	cystathionine gamma-lyase	Cystathionine beta-lyase	Cystathionine gamma-lyase	Cystathionine gamma-synthase	Similar to cystathionine gamma-lyase	Similar to cystathionine beta-lyase hypothetical protein	conserved gene cystathionine beta-lyase	Similar to cystathionine beta-lyase hypothetical protein	Cystathionine beta-lyase	identified by match to protein family HMM PF01053 trans-sulfuration enzyme family protein	Probable cystathionine gamma-lyase	cystathionine beta-lyase	Cystathionine gamma-synthase	Cystathionine beta-lyase/cystathionine gamma- synthase	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; Biological Process: amino acid metabolism (GO:0006520) cystathionine gamma-lyase YrhB	cystathionine gamma-synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cystathionine gamma-lyase-like protein	potential frameshift to 1089 MetC cystathionine beta-lyase	Cystathionine beta-lyase	Cystathionine gamma-synthase	Cystathionine gamma-lyase-like protein	Cystathionine gamma-synthase (EC 2.5.1.48) (CGS) (O-succinylhomoserine	Cystathionine gamma-synthase, putative	Cystathionine gamma-synthase	cystathionine beta-lyase	go_component: cytoplasm [goid 0005737]; go_function: cystathionine gamma-lyase activity [goid 0004123]; go_process: sulfur amino acid metabolism [goid 0000096]; go_process: cysteine metabolism [goid 0006534]; go_process: transsulfuration [goid 0019346] cystathionine gamma-lyase	
HELPY00105	Cysteine synthase	CDS_ID OB1108 cysteine synthase	Cysteine synthase	Cysteine synthase	Cysteine synthase	cysteine synthase	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; Biological Process: cysteine biosynthesis from serine (GO:0006535) putative cysteine synthase YrhA	cysteine synthase	potential frameshift to 1088 cysteine synthase	Cysteine synthase	cysteine synthase homologue	Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine	Ortholog of S. aureus MRSA252 (BX571856) SAR0459 pyridoxal-phosphate dependent enzyme	cysteine synthase homologue	cysteine synthase	cysteine synthase	cysteine synthase homologue	Similar to Bacillus subtilis putative cysteine synthase YrhA TR:O05393 (EMBL:U93874) (307 aa) fasta scores: E(): 2.4e-51, 51.864% id in 295 aa, and to Helicobacter pylori putative cysteine synthase HP0107 SW:CYSM_HELPY (P56067) (306 aa) fasta scores: E(): 4.7e-47, 48.993% id in 298 aa pyridoxal-phosphate dependent enzyme	identified by similarity to EGAD:89450; match to protein family HMM PF00291 cysteine synthase/cystathionine beta-synthase family protein	similar to gi|27469242|ref|NP_765879.1| [Staphylococcus epidermidis ATCC 12228], percent identity 67 in 299 aa, BLASTP E(): e-110 cysteine synthase	Cysteine synthase	cysteine synthase/cystathionine beta-synthase identified by match to protein family HMM PF00291	cysteine synthase	Cysteine synthase COG0031 [E] Cysteine synthase	cysteine synthetase	cysteine synthase family protein identified by similarity to SP:P37887; match to protein family HMM PF00291	Cysteine synthase	cysteine synthase family protein identified by similarity to SP:P37887; match to protein family HMM PF00291	conserved hypothetical protein	
HELPY00106	Putative uncharacterized protein	hypothetical protein	
HELPY00107	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	CDS_ID OB1968; DnaK; chaperonin class I heat shock protein 70	Chaperone protein dnaK	similar to AX066129-1|CAC26303.1| percent identity: 93 in 616 aa putative heat shock protein DnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	SCH44.11c, dnaK, heat shock protein 70 (fragment), len: >515 aa; identical to C-terminal region of previously sequenced SW:DNAK_STRCO (EMBL:L46700) Streptomyces coelicolor DnaK protein (heat shock protein 70) 618 aa.  Contains Pfam match to entry PF00012 HSP70, Hsp70 protein and matches to Prosite entries PS00329 Heat shock hsp70 proteins family signature 2 and PS01036 Heat shock hsp70 proteins family signature 3. Contains also possible colied-coli region at aprox. residues 388..402 SCH35.53, DnaK, heat shock protein 70, len: >135aa; previously sequenced therefore identical to SW:DNAK_STRCO.  Contains Prosite match to PS00297 Heat shock hsp70 proteins family signature 1. heat shock protein 70	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	
HELPY00108	Protein grpE	heat shock protein	chaperone protein (heat shock protein) (HSP-70 cofactor)	Protein grpE	Co-chaperone GrpE	Protein grpE	Protein grpE	Protein grpE	Protein grpE	CDS_ID OB1969 heat shock protein	Protein grpE	heat shock protein (HSP-70 COFACTOR), grpE	Protein grpE	Protein grpE	Protein grpE	Protein grpE	Protein grpE	Protein grpE 2	Protein grpE	Protein grpE	Protein grpE	Protein grpE	Protein grpE	Heat shock protein (hsp-70 cofactor) grpE	Residues 1 to 197 of 197 are 100 pct identical to residues 1 to 197 of a 197 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289166.1 phage lambda replication; host DNA synthesis; heat shock protein; protein repair	Protein grpE	Protein grpE	Protein grpE	Protein grpE	
HELPY00109	Heat-inducible transcription repressor hrcA	Transcriptional regulator of heat shock genes HrcA	Heat-inducible transcription repressor hrcA homolog	heat-inducible transcription repressor	heat-inducible transcription repressor	heat shock transcription repressor (Q9ZMW2) Heat-inducible transcription repressor hrcA homolog High confidence in function and specificity	heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor HrcA	Putative heat shock regulator	Heat-inducible transcription repressor	Heat-inducible transcription repressor	Heat-inducible transcription repressor	Heat-inducible transcription repressor	Heat-inducible transcription repressor	Heat-inducible transcription repressor	Heat-inducible transcription repressor of class I heat shock protein	Heat-inducible transcription repressor HrcA	
HELPY00110	Putative uncharacterized protein	Putative	Putative uncharacterized protein	L-fuculose-1-phosphate aldolase	class II Aldolase and Adducin N-terminal domain, putative identified by match to protein family HMM PF00596	conserved hypothetical protein putative ribulose-5-phosphate 4-epimerase Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	L-fuculose-1-phosphate aldolase	L-fuculose-1-phosphate aldolase	L-fuculose-1-phosphate aldolase	Putative uncharacterized protein	L-fuculose-1-phosphate aldolase	Putative uncharacterized protein	Putative uncharacterized protein	L-fuculose-1-phosphate aldolase	
HELPY00111	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00112	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to PIR:B81277; match to protein family HMM PF01973 motility accessory factor	Putative uncharacterized protein	Putative	hypothetical protein	Hypothetical protein	motility accessory factor identified by match to protein family HMM PF01973	conserved hypothetical protein Function unclear	Protein of unknown function DUF115	Motility accessory factor	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Motility accessory factor	Motility accessory factor	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized protein conserved in bacteria	Putative uncharacterized protein	Motility accessory factor	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00113	Flagellin B	Flagellin	Flagellin	flagelline	conserved gene flagellin	flagelline	identified by similarity to SP:P22252; match to protein family HMM PF00669; match to protein family HMM PF00700 flagellin subunit protein FlaB	Minor flagellin subunit FlaB	Flagellar protein	Flagellin B	filament structural protein Flagellin	Flagellin, C-terminal:Flagellin, N-terminal	Code: N; COG: COG1344 flagellar filament structural protein	Flagellin	flagellin	flagellin-like protein	Flagellin-like	flagellin identified by match to protein family HMM PF00669; match to protein family HMM PF00700	flagellin B	flagellin domain protein PFAM: flagellin domain protein KEGG: bcn:Bcen_2866 flagellin-like	flagellin B (Q07910) Flagellin B (Flagellin N) High confidence in function and specificity	Flagellin domain protein	FliC; flagellin	flagellin domain protein PFAM: flagellin domain protein KEGG: mta:Moth_0760 flagellin-like	flagellin identified by match to protein family HMM PF00669; match to protein family HMM PF00700	flagellin domain protein PFAM: flagellin domain protein KEGG: noc:Noc_2367 flagellin	Flagellin-like	flagellin type B	flagellin B identified by match to protein family HMM PF00669; match to protein family HMM PF00700; match to protein family HMM PF07196	
HELPY00114	DNA topoisomerase 1	DNA topoisomerase I	DNA topoisomerase I (omega-protein) (relaxing enzyme) (untwisting enzyme)	DNA TOPOISOMERASE I	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase	CDS_ID OB1546 DNA topoisomerase I	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase 1	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase 1	DNA topoisomerase	DNA topoisomerase	Residues 15 to 879 of 879 are 99 pct identical to residues 1 to 865 of a 865 aa protein from Escherichia coli K12 ref: NP_415790.1 DNA topoisomerase type I, omega protein	DNA Topoisomerase I-Fused to SWI Domain	DNA topoisomerase	DNA topoisomerase 1	DNA topoisomerase 1	DNA topoisomerase I (omega-protein)	DNA topoisomerase	conserved gene DNA topoisomerase I	
HELPY00115	UPF0026 protein HP_0117	Putative uncharacterized protein	Hypothetical UPF0026 protein JHP0109	Fe-S oxidoreductase	Radical SAM	MoaA/NifB/PqqE family protein	Elongator protein 3/MiaB/NifB	hypothetical protein	Radical SAM	radical SAM superfamily protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: plt:Plut_1460 elongator protein 3/MiaB/NifB	Fe-S protein, radical SAM family	radical SAM domain protein identified by match to protein family HMM PF04055	radical SAM domain protein	Radical SAM domain protein PFAM: Radical SAM domain protein KEGG: mhu:Mhun_2156 radical SAM	conserved hypothetical protein Probable Fe-S oxidoreductases Specificity unclear	Radical SAM domain protein	radical SAM domain protein identified by match to protein family HMM PF04055	Hypothetical protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: dps:DP0197 hypothetical protein	Radical SAM domain protein	Putative Fe-S oxidoreductase	MoaA/NifB/PqqE family protein	MoaA/NifB/PqqE family protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	

HELPY00117	Putative uncharacterized protein	
HELPY00117	Putative uncharacterized protein	

HELPY00119	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Residues 1 to 792 of 792 are 99 pct identical to residues 1 to 792 of a 792 aa protein from Escherichia coli K12 ref: NP_416217.1 phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	PpsA; phosphoenolpyruvate synthase	Probable phosphoenolpyruvate synthase protein	Phosphoenolpyruvate synthase	similar to phosphoenolpyruvate synthase hypothetical protein	conserved gene phosphoenolpyruvate synthase	similar to phosphoenolpyruvate synthase hypothetical protein	Pyruvate,water dikinase	pyruvate, water dikinase phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phosphoenolpyruvate synthase	IPR000121: PEP-utilizing enzyme; IPR008279: PEP-utilising enzyme, mobile region phosphoenolpyruvate synthase	similar to Salmonella typhi Ty2 phosphoenolpyruvate synthase phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Putative phosphoenolpyruvate synthase	phosphoenolpyruvate synthase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	Phosphoenolpyruvate synthase	
HELPY00121	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	similar to Z96801-12|CAB09620.1| percent identity: 67 in 671 aa putative threonyl-tRNA synthetase	Threonyl-tRNA synthetase	threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	SCL2.21c, thrS, threonine-tRNA synthetase, len: 658 aa; highly similar to SW:SYT_MYCTU (EMBL:Z95387) Mycobacterium tuberculosis threonyl-tRNA synthetase (EC 6.1.1.3) thrrS, 692 aa; fasta scores: opt: 1982 z-score: 2236.3 E(): 0; 65.1% identity in 659 aa overlap and to SW:SYT_ECOLI (EMBL:V00291) Escherichia coli threonyl-tRNA synthetase (EC 6.1.1.3) (threonine--tRNA ligase) TrhS, 642 aa; fasta scores: opt: 1335 z-score: 1506.4 E(): 0; 38.1% identity in 654 aa overlap. Contains Pfam match to entry PF00587 tRNA-synt_2b, tRNA synthetases class II (G, H, P and S) and two Prosite matches to entries PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1 and PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2 threonine-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Residues 1 to 642 of 642 are 100 pct identical to residues 1 to 642 of a 642 aa protein from Escherichia coli K12 ref: NP_416234.1 threonine tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	
HELPY00122	Translation initiation factor IF-3	translation initiation factor IF-3	translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor if-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	CDS_ID OB2152 translation initiation factor IF-3	Translation initiation factor IF-3	similar to Z85982-4|CAB06651.1| percent identity: 81 in 172 aa putative translation initiation factor IF-3	Translation initiation factor IF-3	translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	SCI35.22c, infC, translation initiation factor IF-3, len: 217 aa; highly similar to many e.g. IF3_ECOLI translation initiation factor IF-3 (180 aa), fasta scores; opt: 566 z-score: 818.0 E(): 0, 51.2% identity in 172 aa overlap. Uses an ATC initiation codon, in common with Myxococcus xanthus. E. coli and B. subtilis infC begin with ATT. Contains PS00017 ATP /GTP-binding site motif A (P-loop) and Pfam match to entry PF00707 IF3, Translation initiation factor IF-3, score 201.40, E-value 1.4e-56 putative translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	
HELPY00123	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001 ribosomal protein L35	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	Putative 50S ribosomal protein L35	Ortholog of S. aureus MRSA252 (BX571856) SAR1759 50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	LSU ribosomal protein L35P	Similar to Bacillus subtilis 50S ribosomal protein L35 RpmI or BSU28860 SWALL:RL35_BACSU (SWALL:P55874) (65 aa) fasta scores: E(): 8.1e-10, 50% id in 62 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L35 BT0424 SWALL:Q8AAP0 (EMBL:AE016927) (65 aa) fasta scores: E(): 2.8e-25, 98.46% id in 65 aa, and to Porphyromonas gingivalis W83 ribosomal protein L35 RpmI or PG0990 SWALL:AAQ66113 (EMBL:AE017175) (65 aa) fasta scores: E(): 1e-16, 70.76% id in 65 aa putative 50S ribosomal protein L35	50S ribosomal protein L35	Ribosomal protein L35	50S ribosomal protein L35	
HELPY00124	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	CDS_ID OB2150 50S ribosomal protein L20	50S ribosomal protein L20	similar to Z85982-6|CAB06637.1| percent identity: 75 in 128 aa putative 50S ribosomal protein L20	50S ribosomal protein L20	ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	
HELPY00125	Outer membrane protein	outer membrane protein HorB	outer membrane protein 29 hypothetical protein	Outer membrane protein HorB	Outer membrane protein	Outer membrane protein HorB	
HELPY00127	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00128	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00130	L-serine dehydratase	L-serine dehydratase 1	Probable L-serine ammonia-lyase	L-serine deaminase	L-serine dehydratase	L-serine dehydratase	L-serine dehydratase 1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 L-serine ammonia-lyase	L-serine ammonia-lyase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark L-serine dehydratase	L-serine dehydratase	L-serine dehydratase	L-serine dehydratase	L-serine dehydratase	L-serine deaminase; SDH; L-SD; Similar to: HI0288, SDHL_HAEIN L-serine dehydratase	L-serine deaminase SdaA protein	Similar to Q8EEW4 L-serine dehydratase 1 from Shewanella oneidensis (458 aa). FASTA: opt: 1442 Z-score: 1806.4 E(): 1e-92 Smith-Waterman score: 1442; 48.922 identity in 464 aa overlap L-serine dehydratase 1	L-serine dehydratase	L-serine dehydratase	probable L-serine dehydratase protein	L-serine dehydratase 1	L-serine dehydratase	L-serine deaminase	Iron-sulfur-dependent L-serine dehydratase single chain form	Iron-sulfur-dependent L-serine dehydratase single chain form	L-serine ammonia-lyase	L-serine deaminase	L-serine dehydratase 1	L-serine dehydratase 1 KEGG: sil:SPO1323 L-serine ammonia-lyase, ev=0.0, 88% identity TIGRFAM: L-serine dehydratase 1: (1.8e-213) PFAM: serine dehydratase alpha chain: (3.3e-146) serine dehydratase beta chain: (7.8e-49)	
HELPY00131	Serine transporter	Serine transporter	Serine transporter SdaC protein	Similar to serine transporter hypothetical protein	conserved gene serine transporter	Similar to serine transporter hypothetical protein	Serine transporter	IPR002091: Aromatic amino acid permease; IPR002422: Amino acid/polyamine transporter, family II; IPR004694: Serine transporter putative HAAAP family, serine transport protein	similar to Salmonella typhi CT18 putative serine transporter putative serine transporter	Serine transporter	L-serine transporter, similar to E. coli nhaB	HAAAP family serine transporter (Serine:H+ symporter), sdaC	serine transporter	Similar to: HI0289, SDAC_HAEIN Serine transporter	Serine transporter SdaC	Putative HAAAP family serine transport protein	serine transporter	threonine/serine transporter	threonine/serine transporter	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; PubMedId : 8026499; Product type t : transporter putative serine transport protein (HAAAP family)	serine transport protein	Amino acid transporter, transmembrane	L-serine transporter	Serine transporter	Serine transporter, putative	serine transporter identified by match to protein family HMM PF03222	Serine transporter	serine transporter (P44615) Serine transporter High confidence in function and specificity	serine transporter family protein identified by similarity to SP:P0AAD6; match to protein family HMM PF01490; match to protein family HMM PF03222	
HELPY00132	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	Phospho-2-dehydro-3-deoxyheptonate aldolase	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE	Phospho-2-dehydro-3-deoxyheptonate aldolase	similar to AF056968-1|AAC13561.1| percent identity: 66 in 462 aa putative 3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase	probable 2-dehydro-3-deoxyphosphoheptonate aldolase	2-dehydro-3-deoxyphosphoheptonate aldolase	2-dehydro-3-deoxyphosphoheptonate aldolase	SC6E10.09c, aroH, probable 2-dehydro-3-deoxyphosphoheptonate aldolase, len: 450 aa; highly similar to many, especially those from plants e.g.  SW:AROF_ARATH (EMBL:M74819), Dhs1, Arabidopsis thaliana phospho-2-dehydro-3-deoxyheptonate aldolase 1 precursor (525 aa), fasta scores; opt: 1633 z-score: 1839.4 E(): 0, 53.8% identity in 437 aa overlap. The N-terminus is similar (but not identical) to the SW:AROF_STRCO, AroH, Streptomyces coelicolor 2-dehydro-3-deoxyphosphoheptonate aldolase N-terminal sequence determined from purified protein (TVNAKTSPSA GNTDDPLQAP S). Similar to TR:O52308 (EMBL:AF035756) Streptomyces sp.  2-dehydro-3-deoxyphosphoheptonate aldolase (fragment) (448 aa) (90.4% identity in 448 aa overlap). Also similar to TR:Q9Z4X1 (EMBL:AL035654), Aro, S.coelicolor probable 2-dehydro-3-deoxyheptonate aldolase (484 aa) (53.6% identity in 440 aa overlap). An alternative start codon is present at codon 3. Contains Pfam match to entry PF01474 DAHP_synth_2, Class-II DAHP synthetase family putative 2-dehydro-3-deoxyphosphoheptonate aldolase	Phospho-2-dehydro-3-deoxyheptonate aldolase	2-dehydro-3-deoxyphosphoheptonatealdolase	Similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase hypothetical protein	conserved gene 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	Similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase hypothetical protein	identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358 3-deoxy-7-phosphoheptulonate synthase	identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358 3-deoxy-7-phosphoheptulonate synthase	AroG	3-deoxy-7-phosphoheptulonate synthase	Probable 3-deoxy-D-arabino-heptulosonate 7- phosphate synthase AroG	Mb2200c, aroG, len: 462 aa. Equivalent to Rv2178c, len: 462 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 462 aa overlap). Probable aroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase similar to many, especially those from plants. FASTA scores: Y15113|M C3DDAH7P_1Morinda citrifolia mRNA for 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (535 aa) opt: 1421, E(): 0; 48.3% identity in 443 aa overlap. Probable 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AroG (DAHP synthetase, phenylalanine-repressible)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark family II 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	Phospho-2-dehydro-3-deoxyheptonate aldolase	similar to BR1013, identified by sequence similarity to BR1013 and BMEI0971; phospho-2-dehydro-3-deoxyheptonate aldolase, class II Dhs, phospho-2-dehydro-3-deoxyheptonate aldolase, class II	Family II 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	2-dehydro-3-deoxyphosphoheptonatealdolase	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE	COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	Phospho-2-dehydro-3-deoxyheptonate aldolase, class II	3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase	
HELPY00134	Putative peroxiredoxin bcp	bacterioferritin comigratory protein	Putative uncharacterized protein	Antioxidant, AhpC/Tsa family	Putative peroxiredoxin	BACTERIOFERRITIN COMIGRATORY PROTEIN	Bacterioferritin comigratory protein	Bacterioferritin comigratory protein	CDS_ID OB0903 bacterioferritin comigratory protein	similar to AL583918-82|CAC29932.1| percent identity: 60 in 155 aa putative bacterioferritin comigratory protein	Putative bacterioferritin comigratory protein	bacterioferritin	Putative peroxiredoxin bcp	Possible bacterioferritin co-migratory protein	Bacterioferritin comigratory protein	Bacterioferritin comigratory homolog	Bacterioferritin comigratory protein	SCE19A.01, hypothetical protein, partial CDS, len: >31 aa; unknown function, similar to members of the alkyl hydroperoxide reductase C/thiol-specific antioxidant family e.g. TR:O53226 (EMBL:AL021185), bcp, Mycobacterium tuberculosis bacterioferritin comigratory protein (157 aa), fasta scores; opt: 124 z-score: 238.1 E(): 6.2e-06, 63.3% identity in 30 aa overlap SCE6.38, unknown, len: 155 aa. Highly similar to many bacterioferritin co migratory proteins which have no known function e.g. Escherichia coli SW:BCP_ECOLI(EMBL:M63654) bacterioferritin co migratory protein, Bcp (156 aa), fasta scores opt: 516 z-score: 621.8 E(): 3.3e-27 51.1% identity in 141 aa overlap. Overlaps and extends into CDS SCE19A.01 on the adjoining cosmid. Contains a Pfam match to entry PF00578 AhpC-TSA, AhpC/TSA family. hypothetical protein	Peroxiredoxin	Bacterioferritin comigratory protein	Bacterioferritin comigratory protein	Bacterioferritin comigratory protein	peroxiredoxin, bacterioferritin comigratory protein homolog, AhpC/TSA family	Similar to bacterioferritin comigratory protein	Probable bacterioferritin comigratory oxidoreductase protein	Highly similar to bacterioferritin comigratory protein hypothetical protein	conserved gene peroxiredoxin, AhpC/TSA family protein	Highly similar to bacterioferritin comigratory protein hypothetical protein	identified by match to protein family HMM PF00578 bacterioferritin comigratory protein	
HELPY00135	Putative uncharacterized protein	Lactate utilization protein C	identified by similarity to OMNI:HP0137; match to protein family HMM PF02589 conserved domain protein	conserved hypothetical protein	Putative uncharacterized protein	Putative	Uncharacterized ACR Hypothetical protein	identified by similarity to GP:27358777; match to protein family HMM PF02589 conserved hypothetical protein	conserved hypothetical protein	Protein of unknown function DUF162	Evidence 4 : Homologs of previously reported genes of unknown function conserved protein of unknown function	uncharacterized conserved protein COG1556	hypothetical protein	Hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF02589	conserved hypothetical protein (P77433) Hypothetical protein ykgG Specificity unclear	conserved domain protein identified by match to protein family HMM PF02589	Hypothetical protein	Hypothetical protein	Conserved domain protein	Putative uncharacterized protein	Putative uncharacterized protein	conserved hypothetical protein Code: S; COG: COG1556	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative conserved iron-sulfur protein	
HELPY00136	Conserved hypothetical iron-sulfur protein	Putative iron-sulfur protein	Lactate utilization protein B	SCF43A.06, conserved possible iron-sulfur protein, len: 492 aa; similar to several putative iron-sulfur proteins e.g. SW:YKGF_ECOLI (EMBL:AE000137) Escherichia coli hypothetical protein (475 aa), fasta scores; opt: 1148 z-score: 1249.5 E(): 0, 39.7% identity in 481 aa overlap, which contains 2 putative 4Fe-4S centres.  Contains PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature putative iron-sulfur protein	Uncharacterized conserved protein	Probable iron-sulphur protein	identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273 iron-sulfur cluster binding protein	Putative iron-sulfur protein	Putative uncharacterized protein	Putative	Conserved hypothetical iron-sulphur protein	conserved Archaeal 4Fe-4S binding domain protein	identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273 iron-sulfur cluster-binding protein	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273 iron-sulfur cluster binding protein	Iron-sulfur cluster binding protein	Iron-sulfur cluster binding protein	Best Blastp Hit: pir||F81859 conserved hypothetical iron-sulfur protein NMA1650 [similarity] - Neisseria meningitidis (group A strain Z2491) >gi|7380292|emb|CAB84878.1| (AL162756) conserved hypothetical iron-sulphur protein [Neisseria meningitidis] COG1139 Uncharacterized conserved protein containing conserved hypothetical protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain	Iron-sulfur cluster binding protein	Iron-sulfur cluster binding protein	iron-sulfur cluster binding protein TIGRFAMsMatches:TIGR00273	Iron-sulfur cluster binding protein	4Fe-4S ferredoxin, iron-sulfur binding	Iron-sulfur cluster binding protein	Iron-sulfur cluster binding protein TIGRFAM: Iron-sulfur cluster binding protein KEGG: bat:BAS3036 iron-sulfur cluster-binding protein	conserved hypothetical iron-sulfur protein	hypothetical protein similarity to COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain(Evalue: 1E-138)	Iron-sulfur cluster binding protein	
HELPY00137	Conserved hypothetical secreted protein	Probable oxidoreductase iron-sulfur subunit	identified by match to protein family HMM PF02754 cysteine-rich domain protein	Putative iron-sulfur protein	Putative uncharacterized protein	Putative	Hypothetical protein	identified by similarity to GP:27358775; match to protein family HMM PF02754 cysteine-rich domain protein	identified by match to protein family HMM PF02754 cysteine-rich domain protein	Protein of unknown function DUF224, cysteine-rich region	Protein of unknown function DUF224, cysteine-rich region	Best Blastp Hit: pir||D81859 conserved hypothetical protein NMA1648 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380290|emb|CAB84876.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis] COG0247 Fe-S oxidoreductases conserved hypothetical protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative oxidoreductase	Protein of unknown function DUF224, cysteine-rich region	protein of unknown function DUF224, cysteine-rich region	Fe-S oxidoreductase COG0247	Protein of unknown function DUF224, cysteine-rich region	conserved hypothetical secreted protein	protein of unknown function DUF224, cysteine-rich region	protein of unknown function DUF224, cysteine-rich region domain protein PFAM: protein of unknown function DUF224, cysteine-rich region domain protein KEGG: bur:Bcep18194_A6081 protein of unknown function DUF224, cysteine-rich region	protein of unknown function DUF224, cysteine-rich protein	Fe-S oxidoreductase	cysteine-rich domain protein identified by match to protein family HMM PF02754	protein of unknown function DUF224, cysteine-rich region domain protein PFAM: protein of unknown function DUF224, cysteine-rich region domain protein KEGG: pfo:Pfl_0752 protein of unknown function DUF224, cysteine-rich region	cysteine-rich domain protein	putative Fe-S oxidoreductase Specificity unclear	conserved hypothetical protein Conserved hypothetical protein. Homologyt to nma1648 of N. meiningitidis of 55% (trembl|Q825P5) InterPro: Domain of unknown function DUF224 (IPR004017) Pfam: Domain of unknown function no signal no TMHS	Fe-S oxidoreductase identified by match to protein family HMM PF02754	Fe-S oxidoreductase	
HELPY00138	L-lactate permease	L-lactate permease	L-lactate permease	L-lactate permease	identified by similarity to SP:P33231; similarity to SP:Q46839; match to protein family HMM PF02652; match to protein family HMM TIGR00795 L-lactate/glycolate permease	L-lactate permease	High confidence in function and specificity	L-lactate transport	L-lactate permease	L-lactate permease	L-lactate permease	L-lactate transport	L-lactate permease	L-lactate permease	Glycolate permease glca	L-lactate permease	pseudo	L-lactate permease	L-lactate transport	L-lactate permease	L-lactate permease	L-lactate transport	L-lactate permease	
HELPY00139	L-lactate permease	L-lactate permease	L-lactate transporter	L-lactate permease	L-lactate transport TIGRFAM: L-lactate transport PFAM: L-lactate permease KEGG: dsy:DSY2277 hypothetical protein	L-lactate permease	Transporter, lactate permease (LctP) family	L-lactate permease	L-lactate transport	glycolate permease	L-lactate permease	L-lactate permease	Putative L-lactate permease, LctP family; putative membrane protein	
HELPY00140	A/G-specific adenine glycosylase	CDS_ID OB0896 A/G-specific adenine glycosylase	similar to AF121797-1|AAD21076.1| percent identity: 46 in 293 aa conserved hypothetical protein	Adenine glycosylase	Adenine glycosylase	A/G-specific adenine glycosylase	SCE94.06, mutY, putative adenine glycosylase, len: 308 aa; previously partially sequenced therefore partially identical to TR:E1358524 (EMBL:AJ131213) MutY, putative adenine glycosylase from Streptomyces coelicolor (183 aa) fasta scores; opt: 1220, z-score: 1357.4, E(): 0, (100.0% identity in 183 aa overlap). Also similar to many others e.g. SW:MUTY_SALTY MutY, adenine glycosylase from Salmonella typhimurium (350 aa) fasta scores; opt: 500, z-score: 558.7, E(): 8.3e-24, (39.4% identity in 231 aa overlap). Contains Pfam match to entry PF00730 Endonuclease_3, Endonuclease III. putative adenine glycosylase	A/G-specific DNA glycosylase	Lin1797 protein	A/G-specific adenine glycosylase	A/G-specific Adenine Glycosylase	Similar to A/G-specific adenine glycosylase	A/G-specific adenine glycosylase	Similar to A/G-specific adenine glycosylase hypothetical protein	conserved gene A/G specific adenine glycosylase	Similar to A/G-specific adenine glycosylase hypothetical protein	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 A/G-specific adenine glycosylase	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 A/G-specific adenine glycosylase	A/G-specific adenine glycosylase	identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 A/G-specific adenine glycosylase	A/G-specific adenine DNA glycosylase	A/G-specific adenine glycosylase	Weakly similar to Escherichia coli A/G-specific adenine glycosylase MutY or MicA or b2961 SWALL:MUTY_ECOLI (SWALL:P17802) (350 aa) fasta scores: E(): 1.5e-31, 31.09% id in 312 aa. Note all 4 iron-sulfur (4fe-4s) binding sites are conserved between these two orthologues. Also similar to Bacillus halodurans adenine glycosylase bh0931 SWALL:Q9KEC2 (EMBL:AP001510) (372 aa) fasta scores: E(): 2.4e-44, 36.74% id in 362 aa putative A/G-specific adenine glycosylase	A/G-specific adenine glycosylase	A/G-specific adenine glycosylase	hypothetical protein, similar to A/G-specific adenine glycosylase	A/G-SPECIFIC ADENINE GLYCOSYLASE	Adenine glycosylase	Ortholog of S. aureus MRSA252 (BX571856) SAR1958 HhH-GPD superfamily base excision DNA repair protein	


HELPY00141	Cytochrome c oxidase, heme b and copper-binding subunit, membrane-bound	Cytochrome c oxidase, subunit CcoN	CDS_ID OB1746; bo3-type cytochrome c oxidase subunit I	Putative cytochrome-c oxidase fixN chain	Cytochrome-c oxidase fixN chain, heme and copper binding subunit	Cbb3-type cytochrome oxidase, subunit 1	Probable cytochrome c oxidase	cb-type cytochrome c oxidase subunit I	Probable cytochrome-c oxidase, subunit I	identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780 cytochrome c oxidase, cbb3-type, subunit I	Cytochrome c oxidase subunit 1	Cb-type cytochrome C oxidase subunit I	similar to BR0363, cytochrome c oxidase, cbb3-type, subunit I CcoN, cytochrome c oxidase, cbb3-type, subunit I	Cytochrome oxidase	Cbb3-type cytochrome oxidase, subunit 1	Cytochrome-cbb3 oxidase, subunit I	identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780 cytochrome c oxidase, cbb3-type, subunit I	Cbb3-type cytochrome oxidase, subunit 1	identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780 cytochrome c oxidase, cbb3-type, subunit I	Cytochrome c oxidase cbb3-type, subunit I	Cytochrome c oxidase cbb3-type, subunit I	Cytochrome c oxidase cbb3-type, subunit I	Best Blastp Hit: pir||E81050 cytochrome-c oxidase (EC 1.9.3.1) fixN chain NMB1725 [similarity] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226979|gb|AAF42070.1| (AE002522) cytochrome c oxidase, subunit I [Neisseria meningitidis MC58] >gi|7380611|emb|CAB85200.1| (AL162757) cytochrome c oxidase subunit [Neisseria meningitidis] COG0843 Cytochrome c oxidase, heme b and; CcoN putative cytochrome c oxidase subunit	Cytochrome c oxidase, subunit I:Cytochrome c oxidase cbb3-type, subunit I	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type c : carrier Cytochrome c oxidase, cbb3-type, subunit I	Citation: Zeilstra-Ryalls, Kaplan, 1995, J.  Bacteriol. 177:6422-6431; Toledo-Cuevas, et al., 1998, Biochim. Biophys. Acta, 1365:421-434. Cbb3-type cytochrome oxidase CcoN subunit	Cytochrome c oxidase, cbb3-type, subunit I	cytochrome c oxidase, cbb3-type, subunit I	cytochrome c oxidase, cbb3-type, subunit I	
HELPY00142	Cytochrome c oxidase, monoheme subunit, membrane- bound	Cytochrome-c oxidase fixO chain	Cbb3-type cytochrome oxidase, cytochrome c subunit	identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781 cytochrome c oxidase, cbb3-type, subunit II	Probable cytochrome-c oxidase, subunit II	identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781 cytochrome c oxidase, cbb3-type, subunit II	Cb-type cytochrome C oxidase subunit II	Cytochrome oxidase	Putative cytochrome oxidase subunit	cytochrome c oxidase, monoheme subunit, membrane-bound	Cbb3-type cytochrome oxidase, cytochrome c subunit	identified by similarity to GB:AAM76065.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781 cytochrome c oxidase, cbb3-type, subunit II	Cytochrome C oxidase, mono-heme subunit/FixO	Best Blastp Hit: pir||D81050 cytochrome c oxidase, chain II NMB1724 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226978|gb|AAF42069.1| (AE002522) cytochrome c oxidase, subunit II [Neisseria meningitidis MC58]; CcoO putative cytochrome c oxidase subunit	cytochrome c oxidase, cbb3-type, subunit II	Cytochrome C oxidase, mono-heme subunit/FixO	cytochrome c oxidase, cbb3-type, subunit II	cytochrome c oxidase, cbb3-type, subunit II	Cytochrome C oxidase, mono-heme subunit/FixO	cytochrome-c oxidase fixO chain	cytochrome c oxidase, cbb3-type, subunit II TIGRFAMsMatches:TIGR00781	putative FixO cytochrome-cbb3 oxidase subunit similarity:fasta; with=UniProt:Q92ZX7 (EMBL:A95302); Rhizobium meliloti (Sinorhizobium meliloti).; FixO3 cytochrome-c oxidase subunit.; length=250; id 80.800; 250 aa overlap; query 1-250; subject 1-250	Cytochrome C oxidase, mono-heme subunit/FixO	cytochrome c oxidase, cbb3-type, subunit II TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II: (3.4e-154) PFAM: cytochrome C oxidase, mono-heme subunit/FixO: (9.5e-165) KEGG: sil:SPO3525 cytochrome c oxidase, cbb3-type, subunit II, ev=1e-127, 90% identity	cytochrome c oxidase, cbb3-type, subunit II	cytochrome c oxidase monoheme subunit	Cytochrome c oxidase, cbb3-type, subunit II	putative cytochrome c oxidase subunit	
HELPY00143	Cbb3-type cytochrome c oxidase subunit Q	Cb-type cytochrome C oxidase subunit IV	Putative Cytochrome oxidase	cytochrome c oxidase subunit Q	cb-type cytochrome c oxidase subunit IV Family membership	cytochrome c oxidase, cbb3-type, subunit IV identified by match to protein family HMM TIGR02736	Cytochrome c oxidase, cbb3-type, subunit IV	Cytochrome c oxidase, cbb3-type, subunit IV	Cytochrome c oxidase, cbb3-type, subunit IV	Cb-type cytochrome c oxidase subunit IV	Cytochrome c oxidase, Cbb3-type, CcoQ subunit	Cytochrome c oxidase, Cbb3-type, CcoQ subunit	Cytochrome c oxidase, Cbb3-type, CcoQ subunit	Cbb3-type cytochrome c oxidase subunit Q	Cytochrome coxidase subunit Q	Cytochrome C oxidase subunit Q	Cytochrome c oxidase subunit Q	
HELPY00144	Cytochrome c oxidase, diheme subunit, membrane- bound	cytochrome-c oxidase fixP chain	Probable cytochrome-c oxidase, subunit III	identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782 cytochrome c oxidase, cbb3-type, subunit III	Cb-type cytochrome C oxidase subunit III	similar to BR0360, cytochrome c oxidase, cbb3-type, subunit III CcoP, cytochrome c oxidase, cbb3-type, subunit III	Cytochrome oxidase	Cytochrome c oxidase, cbb3-type, subunit III	Cytochrome-cbb3 oxidase, subunit III	identified by similarity to GB:AAC44519.1; match to protein family HMM PF00034; match to protein family HMM TIGR00782 cytochrome c oxidase, cbb3-type, subunit III	Cytochrome c oxidase cbb3-type, subunit III	Cytochrome c heme-binding site:Cytochrome c, class I:Cytochrome c oxidase cbb3-type, subunit III:Cytochrome c, class IC	Class I diheme cytochrome c, also called FixP Citation: Biochim Biophys Acta. 1998 1365(3):421-434. Cbb3-type cytochrome c oxidase CcoP subunit	Cytochrome c, class I	cytochrome c oxidase, cbb3-type, subunit III TIGRFAMsMatches:TIGR00782	cytochrome c oxidase, cbb3-type, subunit III TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III: (1.3e-149) PFAM: cytochrome c, class I: (8.3e-09) KEGG: sil:SPO3523 cytochrome c oxidase, cbb3-type, subunit III, ev=1e-125, 71% identity	cytochrome C oxidase, fixP chain (cbb3-type subunit III) protein Similar to FixP [Rhizobium etli] Similar to entrez-protein:NP_659749.1 Putative location:bacterial inner membrane Psort-Score: 0.1298	Cytochrome c oxidase, cbb3-type, subunit III	Cytochrome c oxidase, cbb3-type, subunit III precursor	cytochrome c oxidase diheme subunit	cytochrome c oxidase, cbb3-type, subunit III	cytochrome c oxidase, cbb3-type, subunit III	Cytochrome c oxidase, cbb3-type, subunit III	Cytochrome c oxidase, cbb3-type, subunit III	cytochrome c oxidase, cbb3-type, subunit III	cytochrome c oxidase, cbb3-type, subunit III	cytochrome c oxidase, Cbb3-type, subunit III identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782	cytochrome c oxidase, cbb3-type, subunit III TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III PFAM: cytochrome c, class I KEGG: pol:Bpro_4302 cytochrome c oxidase, cbb3-type, subunit III	cytochrome c oxidase, cbb3-type, subunit III TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III PFAM: cytochrome c, class I KEGG: hch:HCH_02273 cytochrome c oxidase, cbb3-type, subunit III	
HELPY00145	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00146	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00147	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00149	Putative uncharacterized protein	SCD12A.09c, conserved hypothetical protein, len: 282 aa; similar to TR:AAF10587 (EMBL:AE001953) Deinococcus radiodurans conserved hypothetical protein DR1011, 301 aa; fasta scores: opt: 762 z-score: 923.2 E(): 0; 47.6% identity in 275 aa overlap conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to OMNI:NTL01AA00225; match to protein family HMM PF02642 conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein TTHA1568	Similar to Chlamydia trachomatis hypothetical protein Ct262 SWALL:O84264 (EMBL:AE001299) (256 aa) fasta scores: E(): 8.2e-55, 54.72% id in 254 aa, and to Deinococcus radiodurans hypothetical protein Dr1011 SWALL:Q9RVL6 (EMBL:AE001953) (301 aa) fasta scores: E(): 6.5e-26, 35.15% id in 256 aa conserved hypothetical protein	Putative uncharacterized protein	Putative	Predicted periplasmic solute-binding protein	Putative uncharacterized protein	protein of unknown function DUF191	protein of unknown function DUF191	Putative uncharacterized protein	protein of unknown function DUF191 PFAM: protein of unknown function DUF191: (6e-72) KEGG: dra:DR1011 hypothetical protein, ev=1e-113, 76% identity	conserved hypothetical protein	protein of unknown function DUF191	hypothetical protein	Conserved hypothetical protein outer membrane protein	protein of unknown function DUF191 PFAM: protein of unknown function DUF191 KEGG: aba:Acid345_3445 protein of unknown function DUF191	Conserved hypothetical protein outer membrane protein	conserved hypothetical protein identified by match to protein family HMM PF02642	conserved hypothetical protein	conserved hypothetical protein Function unclear	protein of unknown function DUF191 PFAM: protein of unknown function DUF191 KEGG: fra:Francci3_4422 protein of unknown function DUF191	protein of unknown function DUF191 PFAM: protein of unknown function DUF191 KEGG: gme:Gmet_3380 protein of unknown function DUF191	hypothetical cytosolic protein	Hypothetical protein	
HELPY00148	Conserved hypothetical membrane protein	conserved hypothetical membrane protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00150	Protein recA	recombination protein	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	CDS_ID OB1624; multifunctional protein; recombinase RecA	Protein recA	similar to U04837-1|AAB36572.1| percent identity: 71 in 371 aa recombination protein RecA	Protein recA	recombination protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	Protein recA	SC4H8.08, recA, recombinase A, len: 374 aa; highly similar to many e.g. SW:RECA_STRLI (EMBL:X76076) recombinase A protein (RecA) from Streptomyces lividans (374 aa), fasta scores; opt: 2372 z-score: 3058.5 E(): 0, 99.7% identity in 374 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and PS00321 recA signature recombinase A	Protein recA	
HELPY00151	Enolase	enolase	enolase (2-phosphoglycerate dehydratase)	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	CDS_ID OB2434; 2-phosphoglycerate dehydratase enolase	Enolase	similar to AX064945-1|CAC25712.1| percent identity: 93 in 425 aa putative enolase	Enolase	enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	Enolase	SCE41.05c, eno, enolase, len: 426 aa; similar to SW:ENO_ECOLI (EMBL:X82400) Escherichia coli enolase (EC 4.2.1.11) Eno, 431 aa; fasta scores: opt: 1603 z-score: 1807.6 E(): 0; 60.6% identity in 419 aa overlap. Contains Pfam match to entry PF00113 enolase, Enol-ase and match to Prosite entry PS00164 Enolase signature enolase	
HELPY00152	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00153	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	putative periplasmic protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative periplasmic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00154	Shikimate kinase	shikimate kinase	Putative shikimate kinase	Shikimate kinase	SHIKIMATE KINASE	Putative shikimate kinase	Shikimate kinase	Shikimate kinase	Shikimate kinase 1	CDS_ID OB2455 shikimate kinase	similar to AL583918-129|CAC30025.1| percent identity: 45 in 167 aa shikimate kinase	Putative shikimate kinase	Shikimate kinase	Shikimate kinase	Shikimate kinase I	Shikimate kinase	Shikimate kinase	SC9C5.19c, aroK, shikimate kinase I, len: 171 aa; similar to SW:AROK_ECOLI (EMBL:X80167) Escherichia coli shikimate kinase I (EC 2.7.1.71) AroK, 172 aa; fasta scores: opt: 331 z-score: 376.4 E(): 1.7e-13; 38.6% identity in 166 aa overlap. Contains Pfam match to entry PF01202 SKI, Shikimate kinase and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS01128 Shikimate kinase signature shikimate kinase I	Shikimate kinase	Shikimate kinase	Lin1861 protein	Shikimate kinase	Residues 1 to 225 of 225 are 100 pct identical to residues 16 to 240 of a 240 aa protein from Escherichia coli pir: A65134 shikimate kinase I	Shikimate kinase 1	Shikimate kinase	Shikimate kinase	Shikimate kinase	Shikimate kinase	Shikimate kinase 1	
HELPY00156	Lipopolysaccharide 1,2-glucosyltransferase	Putative lipopolysaccharide biosynthesis protein	lipopolysaccharide 1,2-glycosyltransferase	Glycosyltransferase	lipopolysaccharide 1,2-glucosyltransferase High confidence in function and specificity	Lipopolysaccharide biosynthesis glycosyltransferase	Putative glucosyl transferase	Putative lipopolysaccharide biosynthesis protein	Lipopolysaccharide1,2-glycosyltransferase	Lipopolysaccharide 1,2-glycosyltransferase	
HELPY00155	Putative uncharacterized protein	Putative	Putative uncharacterized protein	Hypothetical protein	hypothetical protein	Hypothetical protein	general glycosylation pathway protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein KEGG: she:Shewmr4_0541 hypothetical protein	hypothetical protein KEGG: cjr:CJE1262 general glycosylation pathway protein	general glycosylation pathway protein	Hypothetical protein	General glycosylation pathway protein	General glycosylation pathway protein	Putative uncharacterized protein	Putative uncharacterized protein	General glycosylation pathway protein	KEGG: shn:Shewana3_0540 hypothetical protein conserved hypothetical protein	Putative integral membrane protein	General glycosylation pathway protein	General glycosylation pathway protein	General glycosylation pathway protein	Putative uncharacterized protein	General glycosylation pathway protein	Putative membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative general glycosylation pathway protein PglG	General glycosylation pathway protein	
HELPY00157	Putative beta-lactamase hcpD	Putative beta-lactamase hcpD precursor	cysteine-rich protein D	Sel1 domain protein repeat-containing protein precursor	conserved hypothetical protein (Q9ZMS0) Putative beta-lactamase hcpD precursor (EC 3.5.2.6) (Cysteine-rich protein D) (PBP 4) (Penicillin-binding protein 4) Specificity unclear	Sel1-like protein KEGG: rpc:RPC_4775 Sel1-like	Putative Beta-lactamase	Sel1-like repeat protein	Sel1 domain protein repeat-containing protein precursor	Sel1 domain protein repeat-containing protein	Putative uncharacterized protein	Cysteine-rich protein D	Cysteine-rich protein D	Cystein-rich protein D	
HELPY00159	UPF0082 protein HP_0162	hypothetical conserved protein	UPF0082 protein SpyM3_0231/SPs1628	UPF0082 protein MYPE8020	UPF0082 protein BMEI0321	UPF0082 protein MMOB1910	UPF0082 protein SMU_1789c	UPF0082 protein yeeN	UPF0082 protein LJ_0904	UPF0082 protein CA_C2295	UPF0082 protein UUR10_0292	Residues 1 to 238 of 238 are 99 pct identical to residues 1 to 238 of a 238 aa protein from Escherichia coli K12 ref: NP_416490.1 orf, conserved hypothetical protein	UPF0082 protein SAV0669	UPF0082 protein MYCGA1330	conserved hypothetical protein	UPF0082 protein lp_2253	identified by similarity to OMNI:SA0727; match to protein family HMM PF01709; match to protein family HMM TIGR01033 conserved hypothetical protein TIGR01033	UPF0082 protein UU295	Hypothetical cytosolic protein	identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033 conserved hypothetical protein TIGR01033	conserved hypothetical protein	Hypothetical UPF0082 protein SE0437	identified by similarity to SP:Q9ZMR9; match to protein family HMM PF01709; match to protein family HMM TIGR01033 conserved hypothetical protein TIGR01033	conserved protein YrbC	conserved hypothetical protein	COG0217 Uncharacterized conserved protein hypothetical protein	UPF0082 protein ycdB	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	UPF0082 protein HH_1604	
HELPY00160	Delta-aminolevulinic acid dehydratase	delta-aminolevulinic acid dehydratase (porphobilinogen synthase)	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	CDS_ID OB2066; delta-aminolevulinic acid dehydratase porphobilinogen synthase	similar to U00018-13|AAA17246.1| percent identity: 60 in 329 aa putative delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	SCE68.09c, hemB, delta-aminolevulinic acid dehydratase, len: 330 aa; previously sequenced as SW:HEM2_STRCO (EMBL:U19249) (330 aa). Contains probable coiled-coil from 218 to 252 (35 residues) (Max score: 1.530, probability 0.97). Contains Pfam match to entry PF00490 ALAD, Delta-aminolevulinic acid dehydratase and PS00169 Delta-aminolevulinic acid dehydratase active site delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Residues 1 to 335 of 335 are 99 pct identical to residues 1 to 335 of a 335 aa protein from Escherichia coli O157:H7 ref: NP_308450.1 5-aminolevulinate dehydratase	Delta-aminolevulinic acid dehydratase	HemB protein	similar to delta-aminolevulinic acid dehydratases (porphobilinogen synthase) hypothetical protein	conserved gene porphobilinogen synthase	similar to delta-aminolevulinic acid dehydratases (porphobilinogen synthase) hypothetical protein	identified by similarity to SP:P50915; match to protein family HMM PF00490 delta-aminolevulinic acid dehydratase	porphobilinogen synthase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	identified by similarity to SP:P30950; match to protein family HMM PF00490 porphobilinogen synthase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Mb0525, hemB, len: 329 aa. Equivalent to Rv0512, len: 329 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 329 aa overlap). Probable hemB, delta-aminolevulinic acid dehydratase (EC 4.2.1.24), equivalent to 46723|HEM2_MYCLE DELTA-AMINOLEVULINIC ACID DEHYDRATASE from Mycobacterium leprae (329 aa). Also highly similar to many e.g. P54919|HEM2_STRCO from Streptomyces coelicolor (330 aa); HEM2_ECOLI|P15002 from Escherichia coli (323 aa), FASTA scores: opt: 942, E(): 0, (47.6% identity in 317 aa overlap); etc. Contains PS00169 Delta-aminolevulinic acid dehydratase active site. BELONGS TO THE ALADH FAMILY. COFACTOR: ZINC. PROBABLE DELTA-AMINOLEVULINIC ACID DEHYDRATASE HEMB (PORPHOBILINOGEN SYNTHASE) (ALAD) (ALADH)	
HELPY00161	Signal-transducing protein, histidine kinase	

HELPY00163	Response regulator	Putative TRANSCRIPTIONAL REGULATOR	response regulator	response regulator (P48259) Probable transcriptional regulator ycf27 (OmpR-like protein) High confidence in function and specificity	Response regulator	Response regulator	Response regulator	
HELPY00164	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00165	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00166	Uncharacterized protease HP_0169	Putative protease	Collagenase	Putative protease	Putative uncharacterized protein yegQ	Peptidase, U32 family	Protease	Collagenase and related proteases	Putative protease	Lin0960 protein	Residues 48 to 500 of 500 are 99 pct identical to residues 1 to 453 of a 453 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288589.1 orf, conserved hypothetical protein	Putative protease	Peptidase family U32	Protease	Collagenase	Similar to putative protease YegQ of Escherichia coli	identified by match to protein family HMM PF01136 peptidase, U32 family	Peptidase family U32	Probable protease	peptidase, U32 family	Protease	identified by similarity to SP:P76403; match to protein family HMM PF01136 peptidase, U32 family	Peptidase U32; Biological Process: proteolysis and peptidolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233) putative protease YrrO	Protease	IPR001539: Peptidase U32 putative protease	similar to Salmonella typhi CT18 putative protease putative protease	Putative uncharacterized protein	Putative uncharacterized protein gbs0763	hypothetical protein, similar to protease	
HELPY00167	Putative uncharacterized protein	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein (Q18823) Laminin-like protein C54D1.5 precursor hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00168	Peptide chain release factor 2	peptide chain release factor 2 in translation	Peptide chain release factor 2	Putative peptide chain release factor 2	Peptide chain release factor 2, programmed frameshift	Peptide chain release factor 2	Bacterial Peptide Chain Release Factor 2	Putative peptide chain release factor	Peptide chain release factor 2	Peptide chain release factor 2	Peptide chain release factor 2	CDS_ID OB2495 peptide chain release factor RF-2	similar to AE000758-12|AAC07656.1| percent identity: 45 in 367 aa putative translation releasing factor RF-2	Probable peptide chain release factor RF-2	translation releasing factor RF-2	Peptide chain release factor 2	Translation peptide releasing factor RF-2	Protein chain release factor B	Peptide chain release factor 2	Peptide chain release factor 2 in translation	Peptide chain release factor 2	SCE59.31c, prfB, chain release factor 2, len: 368 aa; identical to previously sequenced SW:RF2_STRCO (EMBL:D86821) Streptomyces coelicolor peptide chain release factor 2 (RF-2) PrfB, 368 aa. Contains Pfam match to entry PF00472 RF-1, Prokaryotic-type class I peptide chain release factors and match to Prosite entry PS00745 Prokaryotic-type class I peptide chain release factors signature chain release factor 2	Protein chain release factor B	Protein chain release factor B	Peptide chain release factor 2	Peptide chain release factor 2	Peptide chain release factor 2	Peptide chain release factor 2	Peptide chain release factor 2	
HELPY00169	Molybdopterin biosynthesis protein	Molybdenum cofactor biosynthesis protein	Molybdopterin biosynthesis	similar to AE004728-2|AAG06416.1| percent identity: 33 in 383 aa putative molybdopterin bioynthesis protein MoeA	Molybdopterin biosynthesis	Molybdopterin biosynthesis enzyme	Residues 1 to 411 of 411 are 98 pct identical to residues 1 to 411 of a 411 aa protein from Escherichia coli K12 ref: NP_415348.1 molybdopterin biosynthesis	Molybdopterin biosynthesis protein	Molybdopterin molybdenumtransferase	Putative molybdopterin biosynthesis moea protein	Molybdopterin biosynthesis protein MoeA	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 molybdopterin biosynthesis MoeA protein, putative	molybdopterin biosynthesis MoeA protein	Molybdopterin biosynthesis moeA protein	Molybdopterin biosynthesis protein moeA	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 molybdopterin biosynthesis MoeA protein, putative	Molybdopterin biosynthesis protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark molybdopterin biosynthesis	IPR001453: Molybdenum cofactor biosynthesis protein; IPR008285: Molybdenum cofactor biosynthesis protein, C-terminal molybdopterin biosynthesis protein	similar to Salmonella typhi CT18 molybdopterin biosynthesis MoeA protein molybdopterin biosynthesis MoeA protein	Molybdopterin biosynthesis enzyme	Molybdopterin biosynthesis	molybdopterin biosynthesis protein moeA	MOLYBDOPTERIN BIOSYNTHESIS PROTEIN	Molybdopterin biosynthesis protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2357 putative molybdenum cofactor biosynthesis protein	molybdopterin biosynthesis protein moeA	molybdopterin biosynthesis protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme molybdopterin biosynthesis protein	
HELPY00170	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein FliR	FLAGELLAR BIOSYNTHETIC PROTEIN FLIR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	CDS_ID OB1573; required for flagellar formation flagellar protein	Putative type III secretion inner membrane protein SctT	flagellar biosynthesis protein FliR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	Lin0686 protein	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	Flagellar biosynthetic protein fliR	conserved gene flagellar biosynthetic protein FliR	Flagellar biosynthetic protein fliR	identified by similarity to SP:P35537; similarity to SP:Q45975; match to protein family HMM PF01311 flagellar biosynthetic protein FliR	identified by similarity to SP:P35537; match to protein family HMM PF01311; match to protein family HMM TIGR01400 flagellar biosynthetic protein FliR	Flagellar biosynthetic protein fliR	InterProMatches:IPR006303; required for flagellar formation, Biological Process: protein transport (GO:0015031), Cellular Component: integral to membrane (GO:0016021), Cellular Component: flagellum (GO:0019861) flagellar protein	flagellar biosynthetic protein FliR	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar biosynthetic protein	IPR002010: Bacterial export protein, family 1 putative flagellar biosynthetic protein	
HELPY00171	Putative uncharacterized protein	identified by match to protein family HMM PF04401 membrane protein, putative	Putative uncharacterized protein	Putative	probable transmembrane protein	Membrane protein, putative	hypothetical protein	hypothetical protein	putative integral membrane protein	conserved hypothetical protein hypothetical protein	putative transmembrane protein KEGG: neu:NE0081 possible transmembrane protein	membrane protein, putative identified by match to protein family HMM PF04401	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative integral membrane protein	jgi|Lotgi1|113896|e_gw1.18.275.1	Putative integral membrane protein	Putative integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00172	Uncharacterized protein HP_0175	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	CDS_ID OB1148 post-translocation molecular chaperone	similar to cell binding factor 2 precursor	PpiC-type peptidyl-prolyl cis-trans isomerase	Peptidil-prolyl cis-trans isomerase	Foldase protein prsA	Foldase protein prsA	Parvulin-like PPIase	Peptidyl-prolyl cis-trans isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase	Putative isomerase rotamase signal peptide protein	identified by match to protein family HMM PF00639 PPIC-type PPIASE domain protein	identified by similarity to SP:Q46105; match to protein family HMM PF00639 major antigenic peptide PEB4	Peptidyl prolyl cis-trans isomerase D signal peptide protein	pric/parvulin family of rotamase; Molecular Function: isomerase activity (GO:0016853) putative PpiC-type peptidyl-prolyl cis-trans isomerase	Putative uncharacterized protein	similar to BR1943, peptidyl-prolyl cis-trans isomerase peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Hypothetical protein JHP0161 precursor	Peptidyl-prolyl cis-trans isomerase family protein	PpiC-type peptidyl-prolyl cis-trans isomerase	peptidyl-prolyl cis-trans isomerase (protein export protein)	PpiC-type peptidyl-prolyl cis-trans isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase	Protein export protein PrsA precursor	PpiC-type peptidyl-prolyl cis-trans isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase	Parvulin-like peptidyl-prolyl isomerase	
HELPY00173	Fructose-bisphosphate aldolase	fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase, class II	Fructose-bisphosphate aldolase	FRUCTOSE-BISPHOSPHATE ALDOLASE	Fructose-1,6-biphosphate aldolase	FRUCTOSE-BISPHOSPHATE ALDOLASE	fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase	Tagatose-bisphosphate aldolase	Fructose-1,6-bisphosphate aldolase	Fructose-biphosphate aldolase	Fructose-1,6-bisphosphate aldolase, class II	FbaA protein	Fructose-bisphosphate aldolase, class-II	Fructose-bisphosphate aldolase	fructose-bisphosphate aldolase	Probable fructose-bisphosphate aldolase protein	Fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase	fructose-bisphosphate aldolase class II	Fructose-bisphosphate aldolase	fructose-bisphosphate aldolase	Fructose-1,6-bisphosphate aldolase class II	
HELPY00174	Elongation factor P	elongation factor P	translation elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	CDS_ID OB1895 translation elongation factor EF-P	Elongation factor P	similar to X99289-1|CAA67673.1| percent identity: 91 in 187 aa elongation factor P	Elongation factor P 2	Elongation factor P	Elongation factor P 2	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	SC9C5.15c, efp, elongation factor P, len: 188 aa; similar to SW:EFP_BRELA (EMBL:X99289) Brevibacterium lactofermentum elongation factor P Efp, 187 aa; fasta scores: opt: 742 z-score: 903.7 E(): 0; 60.6% identity in 188 aa overlap. Contains Pfam match to entry PF01132 EFP, Elongation factor P (EF-P) and match to Prosite entry PS01275 Elongation factor P signature elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	
HELPY00175	Spore coat polysaccharide biosynthesis protein E	Sialic acid synthase	N-acetylneuraminate synthase	identified by similarity to GB:AAM76272.1; match to protein family HMM PF01354; match to protein family HMM PF03102 N-acetylneuraminic acid synthetase	Sialic acid synthase	Sialic acid synthase	N-acetylneuraminate synthase	identified by match to protein family HMM PF01354; match to protein family HMM PF03102 neuB protein	identified by match to protein family HMM PF01354; match to protein family HMM PF03102 neuB family protein	NeuB:Antifreeze-like	Antifreeze-like protein	N-acetylneuraminic acid synthase [Source:HGNC Symbol;Acc:19237]	NeuB	N-acylneuraminate-9-phosphate synthase	N-acylneuraminate-9-phosphate synthase precursor	sialic acid synthase	N-acetylneuraminate synthase	N-acylneuraminate-9-phosphate synthase	N-acylneuraminate-9-phosphate synthase	N-acylneuraminate-9-phosphate synthase	N-acetylneuraminate synthase	sialic acid synthase identified by match to protein family HMM PF01354; match to protein family HMM PF03102	N-acetylneuraminic acid synthetase	Sialic acid synthase	sialic acid synthase identified by match to protein family HMM PF01354; match to protein family HMM PF03102	N-acylneuraminate-9-phosphate synthase PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain KEGG: mhu:Mhun_3098 N-acylneuraminate-9-phosphate synthase	N-acetylneuraminic acid synthase, N-terminal domain PFAM: GCN5-related N-acetyltransferase; N-acetylneuraminic acid synthase, N-terminal domain; SAF domain KEGG: bsu:BG10613 spore coat polysaccharide biosynthesis protein spsE	hypothetical protein	pseudaminic acid synthase, NeuB identified by similarity to GB:AAD45660.1; match to protein family HMM PF01354; match to protein family HMM PF03102	
HELPY00176	ABC transporter, ATP-binding protein	ABC transporter	ABC transporter, ATP-binding protein hypothetical protein	ABC transporter, ATP-binding protein	ABC transporter	ABC transporter ATP-binding protein	ABC-type transport system, ATP binding protein	
HELPY00177	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546 apolipoprotein N-acyltransferase	identified by similarity to SP:O87576; match to protein family HMM TIGR00546 apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme apolipoprotein N-acyltransferase, copper homeostasis protein	ALP N-acyltransferase; Copper homeostasis protein CutE homolog; Similar to: HI0302, LNT_HAEIN apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase (copper homeostasis protein)	ortholog to Escherichia coli bnum: b0657; MultiFun: Cell structure 6.1; Metabolism 1.6.10 apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546	apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase TIGRFAM: apolipoprotein N-acyltransferase: (6e-83) PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase: (7e-09) KEGG: sil:SPOA0010 apolipoprotein N-acyltransferase, ev=1e-113, 48% identity	apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase precursor	apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546	apolipoprotein N-acyltransferase identified by similarity to GB:AAD09824.1; match to protein family HMM PF00795; match to protein family HMM TIGR00546	apolipoprotein N-acyltransferase, putative	Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP N-acyltransferase) hypothetical protein	apolipoprotein N-acyltransferase TIGRFAM: apolipoprotein N-acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase KEGG: gme:Gmet_2367 apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase TIGRFAM: apolipoprotein N-acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase KEGG: neu:NE1188 carbon-nitrogen hydrolase:apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase identified by match to protein family HMM TIGR00546	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	
HELPY00178	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Colicin V production protein	hypothetical protein	colicin V production protein	CvpA family protein identified by match to protein family HMM PF02674	conserved hypothetical protein Uncharacterized membrane protein, required for colicin V production hypothetical protein	cvpA family protein identified by match to protein family HMM PF02674	Colicin V production protein	Colicin V production protein	CvpA family protein	Putative integral membrane protein	Colicin V production protein	Colicin V production protein	CvpA family protein	CvpA family protein	Putative uncharacterized protein	Putative uncharacterized protein	CvpA family protein	Conserved hypothetical integral membrane protein, CvpA family	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00179	Lysyl-tRNA synthetase	lysyl-tRNA synthetase	lysyl-tRNA synthetase (lysine--tRNA ligase)	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	CDS_ID OB0088 lysine-tRNA ligase	similar to AP002568-104|BAB38534.1| percent identity: 38 in 520 aa putative lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Residues 1 to 505 of 505 are 99 pct identical to residues 1 to 505 of a 505 aa protein from Escherichia coli K12 ref: NP_417366.1 lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA	Lysyl-tRNA synthetase	
HELPY00180	Serine hydroxymethyltransferase	serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase 1	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase 1	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	similar to AF327063-1|AAK60516.1| percent identity: 91 in 434 aa serine hydroxymethyltransferase	glycine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	SC2A11.04c, glyA2, probable serine hydroxymethyltransferase, len: 420 aa; highly similar to many e.g. GLYA_ECOLI serine hydroxymethyltransferase (EC 2.1.2.1) (417 aa), fasta scores; opt: 1530 z-score: 1748.7 E(): 0, 56.1% identity in 412 aa overlap. Contains PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site and Pfam match to entry PF00464 SHMT, Serine hydroxymethyltransferase, score 773.50, E-value 6.4e-232 serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	serine hydroxymethyltransferase	identified by match to protein family HMM PF00464 serine hydroxymethyltransferase	Serine hydroxymethyltransferase	serine hydroxymethyltransferase	Serine hydroxymethyltransferase	
HELPY00181	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00182	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00183	Putative uncharacterized protein	protein of unknown function identified by match to protein family HMM PF03235; match to protein family HMM PF07510	

HELPY00186	UPF0114 protein HP_0189	UPF0114 protein yqhA	UPF0114 protein in repA1-repA2 intergenic region	Residues 11 to 174 of 174 are 99 pct identical to residues 1 to 164 of a 164 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289579.1 orf, conserved hypothetical protein	Probable transmembrane protein	Probable uncharacterized upf0114; transmembrane protein	putative membrane protein hypothetical protein	conserved gene transmembrane protein	putative membrane protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	IPR005134: Uncharacterized protein family UPF0114 putative membrane-associated protein	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Hypothetical UPF0114 protein JHP0175	Similar to: HI0507, YQHA_HAEIN predicted membrane protein	UPF0114 protein PP_0682	Similar to Y208_VIBCH (Q9KVD8) Hypothetical protein VC0208 from Vibrio cholerae (162 aa). FASTA: opt: 414 Z-score: 528.5 E(): 1.5e-21 Smith-Waterman score: 414; 41.875 identity in 160 aa overlap ORF ftt0193c conserved hypothetical membrane protein	UPF0114 protein in repA1-repA2 intergenic region	UPF0114 protein yqhA	Hypothetical protein	identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645 conserved hypothetical protein TIGR00645	identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645 conserved hypothetical protein TIGR00645	Uncharacterized protein UPF0114	Uncharacterized protein UPF0114	Uncharacterized protein UPF0114	Uncharacterized protein UPF0114	Code: S; COG: COG2862 conserved hypothetical protein	Evidence 4 : Homologs of previously reported genes of unknown function; Product type m : membrane component conserved protein of unknown function	Code: S; COG: COG2862 conserved hypothetical protein	
HELPY00187	Uncharacterized protein HP_0190	Putative uncharacterized protein VPA0341	CARDIOLIPIN SYNTHETASE	Cardiolipin synthase	Hypothetical protein JHP0176	cardiolipin synthetase	Phospholipase D family protein	identified by similarity to GB:AAO53649.1; match to protein family HMM PF00614 phospholipase D family protein	Phospholipase D/Transphosphatidylase	Phospholipase D protein, putative	cardiolipin synthase	phospholipase D, putative identified by match to protein family HMM PF00614	phospholipase D-family protein	phospholipase D/Transphosphatidylase	phospholipase D/Transphosphatidylase PFAM: phospholipase D/Transphosphatidylase KEGG: bur:Bcep18194_A6079 phospholipase D/transphosphatidylase	phospholipase D/Transphosphatidylase PFAM: phospholipase D/Transphosphatidylase KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase	phospholipase D/Transphosphatidylase PFAM: phospholipase D/Transphosphatidylase KEGG: ppr:PBPRB1025 hypothetical protein	Phospholipase D/Transphosphatidylase	phospholipase (Q9ZMP2) Hypothetical protein JHP0176(Q9ZMP2) Specificity unclear	phospholipase D family protein identified by match to protein family HMM PF00614	phospholipase D, putative identified by match to protein family HMM PF00614	phospholipase D/Transphosphatidylase PFAM: phospholipase D/Transphosphatidylase KEGG: shm:Shewmr7_1436 phospholipase D/transphosphatidylase	Phospholipase D family protein	Putative phospholipase D protein	Phospholipase D family protein	putative cardiolipin synthase	Phospholipase D family protein	Phospholipase D/Transphosphatidylase precursor	Phospholipase D/Transphosphatidylase precursor	
HELPY00188	Fumarate reductase iron-sulfur subunit	identified by similarity to SP:P17596; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384 fumarate reductase, iron-sulfur protein subunit	Similar to Bacillus subtilis succinate dehydrogenase iron-sulfur protein SdhB SWALL:DHSB_BACSU (SWALL:P08066) (252 aa) fasta scores: E(): 1.7e-42, 44.98% id in 249 aa, and to Chlamydia pneumoniae succinate dehydrogenase SdhB or cp1082 SWALL:Q9JRX8 (EMBL:AE002264) (258 aa) fasta scores: E(): 8.4e-88, 83.65% id in 257 aa succinate dehydrogenase iron-sulfur protein	Fumarate reductase	Fumarate reductase iron-sulfur protein	Succinate dehydrogenase/fumarate reductase iron-sulfur protein	subunit of succinate dehydrogenase EC 1.3.99.1	Succinate dehydrogenase and fumarate reductase iron-sulfur protein	fumarate reductase, iron-sulfur subunit	succinate dehydrogenase, iron-sulfur subunit (fumarate reductase, iron-sulfur subunit)	4Fe-4S ferredoxin, iron-sulfur binding domain protein PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein KEGG: ade:Adeh_2638 4Fe-4S ferredoxin, iron-sulfur binding protein	fumarate reductase iron-sulfur protein identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384	succinate dehydrogenase and fumarate reductase iron-sulfur protein	fumarate reductase iron-sulfur protein (O06914) Fumarate reductase iron-sulfur protein (EC 1.3.99.1)(O06914) Fumarate reductase iron-sulfur protein (EC 1.3.99.1) High confidence in function and specificity	succinate dehydrogenase, iron-sulfur protein identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM TIGR00384	succinate dehydrogenase and fumarate reductase iron-sulfur protein KEGG: shm:Shewmr7_3620 succinate dehydrogenase and fumarate reductase iron-sulfur protein TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein	succinate dehydrogenase and fumarate reductase iron-sulfur protein KEGG: son:SO0399 fumarate reductase iron-sulfur protein TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein	fumarate reductase, iron-sulfur protein subunit identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384	Succinate dehydrogenase and fumarate reductase iron-sulfur protein	Succinate dehydrogenase and fumarate reductase iron-sulfur protein	succinate dehydrogenase and fumarate reductase iron-sulfur protein KEGG: shm:Shewmr7_3620 succinate dehydrogenase and fumarate reductase iron-sulfur protein TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein	succinate dehydrogenase and fumarate reductase iron-sulfur protein KEGG: dvu:DVU3263 fumarate reductase, iron-sulfur protein TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein	Succinate dehydrogenase and fumarate reductase iron-sulfur protein	Succinate dehydrogenase (ubiquinone) KEGG: son:SO0399 fumarate reductase iron-sulfur protein	Fumarate reductase, iron-sulfur subunit	Succinate dehydrogenase and fumarate reductase iron-sulfur protein	Fumarate reductase, iron-sulfur protein subunit	KEGG: slo:Shew_0335 succinate dehydrogenase and fumarate reductase iron-sulfur protein TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein PFAM: ferredoxin succinate dehydrogenase and fumarate reductase iron-sulfur protein	KEGG: slo:Shew_0335 succinate dehydrogenase and fumarate reductase iron-sulfur protein Succinate dehydrogenase	
HELPY00189	Fumarate reductase flavoprotein subunit	Fumarate reductase	Fumarate reductase flavoprotein subunit	Succinate dehydrogenase or fumarate reductase, flavoprotein subunit	Succinate dehydrogenase or fumarate reductase, flavoprotein subunit	fumarate reductase, flavoprotein subunit	fumarate reductase flavoprotein subunit identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812	succinate dehydrogenase or fumarate reductase, flavoprotein subunit	fumarate reductase flavoprotein subunit (O06913) Fumarate reductase flavoprotein subunit (EC 1.3.99.1)(O06913) Fumarate reductase flavoprotein subunit (EC 1.3.99.1) High confidence in function and specificity	succinate dehydrogenase or fumarate reductase, flavoprotein subunit KEGG: shm:Shewmr7_3621 succinate dehydrogenase or fumarate reductase, flavoprotein subunit TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein	succinate dehydrogenase or fumarate reductase, flavoprotein subunit TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein KEGG: son:SO0398 fumarate reductase flavoprotein subunit	fumarate reductase, flavoprotein subunit identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812	Succinate dehydrogenase or fumarate reductase, flavoprotein subunit	succinate dehydrogenase or fumarate reductase, flavoprotein subunit KEGG: son:SO0398 fumarate reductase flavoprotein subunit TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein	succinate dehydrogenase or fumarate reductase, flavoprotein subunit KEGG: dde:Dde_1257 succinate dehydrogenase or fumarate reductase, flavoprotein subunit TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein	Succinate dehydrogenase or fumarate reductase, flavoprotein subunit	Succinate dehydrogenase KEGG: son:SO0398 fumarate reductase flavoprotein subunit	Fumarate reductase, flavoprotein subunit	Succinate dehydrogenase or fumarate reductase, flavoprotein subunit	Fumarate reductase, flavoprotein subunit	KEGG: slo:Shew_0334 succinate dehydrogenase or fumarate reductase, flavoprotein subunit TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase succinate dehydrogenase or fumarate reductase, flavoprotein subunit	KEGG: slo:Shew_0334 succinate dehydrogenase or fumarate reductase, flavoprotein subunit Succinate dehydrogenase	Fumarate reductase flavoprotein subunit	Fumarate reductase, flavoprotein subunit	Succinate dehydrogenase or fumarate reductase, flavoprotein subunit	Fumarate reductase flavoprotein subunit	Fumarate reductase flavoprotein subunit	Succinate dehydrogenase or fumarate reductase, flavoprotein subunit	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	
HELPY00190	Fumarate reductase cytochrome b subunit	Fumarate reductase	Fumarate reductase cytochrome b subunit	Fumarate reductase respiratory complex, transmembrane subunit	fumarate reductase, cytochrome b subunit	fumarate reductase respiratory complex, transmembrane subunit identified by match to protein family HMM PF02967	fumarate reductase, cytochrome b subunit	fumarate reductase cytochrome B subunit (Q9ZMN9) Fumarate reductase cytochrome b subunit(Q9ZMN9) Fumarate reductase cytochrome b subunit High confidence in function and specificity	fumarate reductase, cytochrome b subunit identified by match to protein family HMM PF02967	Fumarate reductase, cytochrome b subunit	fumarate reductase respiratory complex, transmembrane subunit PFAM: fumarate reductase respiratory complex, transmembrane subunit KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit	Fumarate reductase, cytochrome b subunit	Fumarate reductase, cytochrome b subunit	Fumarate reductase cytochrome B subunit	Fumarate reductase, cytochrome b subunit	Fumarate reductase respiratory complex, transmembrane subunit	Fumarate reductase respiratory complex, transmembrane subunit	Succinate dehydrogenase/fumarate reductase, cytochrome b subunit	Fumarate reductase respiratory complex, transmembrane subunit	Fumarate reductase, cytochrome b subunit	Fumarate reductase cytochrome b-556 subunit	Fumarate reductase, cytochrome b subunit	Fumarate reductase, cytochrome b subunit	Fumarate reductase respiratory complex, transmembrane subunit	Fumarate reductase respiratory complex, transmembrane subunit	Fumarate reductase cytochrome B subunit	Fumarate reductase respiratory complex transmembrane subunit	Fumarate reductase respiratory complex transmembrane subunit	Fumarate reductase, transmembrane subunit; putative membrane protein	
HELPY00191	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	CDS_ID OB2436 triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triose-phosphate isomerase	Residues 1 to 255 of 255 are 100 pct identical to residues 1 to 255 of a 255 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290548.1 triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	identified by similarity to EGAD:19971; match to protein family HMM PF00121; match to protein family HMM TIGR00419 triosephosphate isomerase	
HELPY00192	Enoyl-[acyl-carrier-protein] reductase	enoyl-[acyl-carrier-protein] reductase [NADH]	Putative enoyl-ACP reductase	Enoyl-(Acyl-carrier-protein) reductase	Enoyl-[acyl-carrier-protein] reductase	ENOYL-(ACYL-CARRIER-PROTEIN) REDUCTASE	Enoyl-[acyl-carrier-protein] reductase	CDS_ID OB0223 enoyl-[acyl-carrier protein] reductase	Probable NADH-dependent enoyl-ACP reductase	enoyl-acyl carrier protein reductase	Enoyl-acyl carrier protein reductase	Enoyl-[acyl-carrier protein] reductase	Enoyl-[acyl-carrier-protein] reductase	SCI28.08c, inhA, probable enoyl-(acyl-carrier-protein) reductase, len: 269 aa; similar to many e.g. SW:INHA_MYCSM enoyl-(acyl-carrier-protein) reductase involved from Mycobacterium smegmatis (269 aa) fasta scores; opt: 740, z-score: 852.1, E(): 0, (51.3% identity in 263 aa overlap). Contains Pfam match to entry PF00106 adh_short, short chain dehydrogenase. putative enoyl-(acyl-carrier-protein) reductase	Enoyl-[acyl-carrier-protein] reductase	Lin0969 protein	Enoyl-[acyl-carrier-protein ] reductase	Residues 1 to 262 of 262 are 100 pct identical to residues 1 to 262 of a 262 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287908.1 enoyl-[acyl-carrier-protein] reductase (NADH)	Enoyl-Acyl-Carrier Protein Reductase	Short-chain dehydrogenase/reductase (SDR) superfamily	Trans-2-enoyl-ACP reductase	FabI protein	Probable enoyl-[acyl-carrier-protein] reductase [nadh] oxidoreductase	Enoyl-[acyl-carrier-protein] reductase	similar to Enoyl-[acyl-carrier-protein] reductase hypothetical protein	conserved gene enoyl reductase	similar to Enoyl-[acyl-carrier-protein] reductase hypothetical protein	Enoyl-[acyl-carrier protein] reductase	identified by match to protein family HMM PF00106; match to protein family HMM PF00678 enoyl-(acyl-carrier-protein) reductase	
HELPY00193	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase	Residues 1 to 341 of 341 are 100 pct identical to residues 1 to 341 of a 341 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285873.1 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; third step of endotoxin (lipidA) synthesis	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	Similar to UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase hypothetical protein	conserved gene UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	Similar to UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase hypothetical protein	UDP-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase	identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase	UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	
HELPY00194	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	CDS_ID OB2314 S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	similar to AX063959-1|CAC25220.1| percent identity: 90 in 406 aa methionine adenosyltransferase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	SCL6.33c, metK, S-adenosylmethionine synthetase, len: 402 aa; identical to TR:Q9X4Q2 (EMBL:AF117274) Streptomyces spectabilis S-adenosylmethionine synthetase (EC 2.5.1.6) MetK, 411 aa and highly similar to SW:METK_BACSU (EMBL:U52812) Bacillus subtilis S-adenosylmethionine synthetase (EC 2.5.1.6) MetK, 400 aa; fasta scores: opt: 1583 z-score: 1723.1 E(): 0; 61.9% identity in 402 aa overlap. Contains Pfam match to entry PF00438 S-AdoMet_synt, S-adenosylmethionine synthetase and matches to Prosite entries PS00376 S-adenosylmethionine synthetase signature 1 and PS00377 S-adenosylmethionine synthetase signature 2 S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	
HELPY00195	Nucleoside diphosphate kinase	nucleoside-diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	CDS_ID OB1787 nucleoside-diphosphate kinase	similar to AX064683-1|CAC25581.1| percent identity: 99 in 136 aa putative nucleoside diphosphate kinase	nucleoside-diphosphate-kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	SCC88.23c, ndk, nucleoside diphosphate kinase, 137 aa; identical to previously sequenced SW:NDK_STRCO (EMBL:X95643) Streptomyces coelicolor nucleoside diphosphate kinase (EC 2.7.4.6) Ndk, 137 aa. Contains Pfam match to entry PF00334 NDK, Nucleoside diphosphate kinases and match to Prosite entry PS00469 Nucleoside diphosphate kinases active site nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Residues 1 to 143 of 143 are 100 pct identical to residues 352 to 494 of a 494 aa protein from Cloning vector pZEO-SG4 gb: AAA93513.1 orf, partial conserved hypothetical protein	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	
HELPY00196	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00198	Phosphate acyltransferase	fatty acid/phospholipid biosynthesis	Phosphate acyltransferase	Fatty acid/phospholipid synthesis protein plsX	Phosphate acyltransferase	Fatty acid/phospholipid synthesis protein plsX	Phosphate acyltransferase	Phosphate acyltransferase	Phosphate acyltransferase	Phosphate acyltransferase	CDS_ID OB1522 fatty acid phospholipid synthesis protein	Phosphate acyltransferase	Phosphate acyltransferase	fatty acid/phospholipid synthesis protein	Phosphate acyltransferase	Phosphate acyltransferase	Phosphate acyltransferase	Phosphate acyltransferase	Phosphate acyltransferase	Phosphate acyltransferase	Fatty acid/phospholipid synthesis protein plsX	Phosphate acyltransferase	Phosphate acyltransferase	Phosphate acyltransferase	Fatty acid /phospholipid synthesis protein	Phosphate acyltransferase	Residues 1 to 332 of 332 are 99 pct identical to residues 15 to 346 of a 346 aa protein from Escherichia coli O157:H7 ref: NP_309495.1 PlsX protein	Phosphate acyltransferase	Fatty acid/phospholipid synthesis protein plsX	
HELPY00199	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier protein] synthase	3-oxoacyl-(Acyl-carrier-protein) synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1	3-oxoacyl-[acyl-carrier-protein] synthase 3	CDS_ID OB1204 3-oxoacyl-(acyl-carrier protein) synthase	Probable 3-oxoacyl-[acyl-carrier-protein] synthase III, fabH	3-oxoacyl-(acyl-carrier-protein) synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-acyl carrier protein synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	Type III beta-ketoacyl synthase-like protein	Residues 1 to 317 of 317 are 99 pct identical to residues 1 to 317 of a 317 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287225.1 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase III	conserved gene 3-oxoacyl-(acyl carrier protein) synthase II FabH	3-oxoacyl-[acyl-carrier-protein] synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2	identified by match to protein family HMM TIGR00747 3-oxoacyl-(acyl-carrier-protein) synthase III	
HELPY00200	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00201	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein (P53127) Hypothetical 163.2 kDa protein in RPL1B-CEG1 intergenic region(P53127) Hypothetical 163.2 kDa protein in RPL1B-CEG1 intergenic region conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00202	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00203	Putative uncharacterized protein	
HELPY00204	Protein mrp homolog	ATPase involved in chromosome partitioning	Putative uncharacterized protein	ParA family protein	ATP-binding protein	MRP PROTEIN	Mrp protein	Putative ATP-binding protein	Putative ATPase	CDS_ID OB0196; MRP/NBP35 family ATP-binding Mrp-like protein	similar to AL390975-15|CAC01353.1| percent identity: 63 in 370 aa putative ATP-binding protein Mrp	MRP protein(ATP/GTP-binding protein) homolog	Iron-sulfur cluster assembly/repair protein	MRP protein(ATP/GTP-binding protein) homolog	Chromosome partitioning protein	ATP-binding Mrp protein	SCP8.15c, probable ATP-binding protein, len: 371 aa; similar to SW:MRP_MYCTU (EMBL:Z98260) Mycobacterium tuberculosis Mrp protein homolog MTV006.01c, 390 aa; fasta scores: opt: 1650 z-score: 1730.0 E(): 0; 67.9% identity in 371 aa overlap and to SW:MRP_ECOLI (EMBL:U00007) Escherichia coli Mrp protein, 379 aa; fasta scores: opt: 706 z-score: 744.5 E(): 0; 35.8% identity in 363 aa overlap. Contains Pfam matches to entries PF01883 DUF59, Domain of unknown function DUF59 and PF00142 fer4_NifH, 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS01215 Mrp family signature putative ATP-binding protein	ATPases involved in chromosome partitioning	ATP-binding Mrp protein	Mrp protein	Protein mrp homolog	mrp protein	Cell division ATPase	Residues 1 to 379 of 379 are 99 pct identical to residues 1 to 379 of a 379 aa protein from Escherichia coli O157:H7 ref: NP_310946.1 putative ATPase	Putative uncharacterized protein	Putative uncharacterized protein mrp	ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog	ATP-binding protein Mrp-like protein	Probable mrp atpase involved in chromosome partitioning protein	

HELPY00205	Putative uncharacterized protein	outer membrane protein HofA	Putative uncharacterized protein	Outer membrane protein	Outer membrane protein HofA	
HELPY00206	Chaperone protein htpG	heat shock protein	Chaperone protein htpG	Chaperone protein htpG	heat shock protein 82	Chaperone protein htpG	Chaperone protein htpG	CDS_ID OB3158; chaperonin class III heat shock protein	Putative heat shock protein HtpG	heat shock protein HtpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	SCBAC25F8.08, htpG, heat shock protein, len: 638 aa; similar to SW:HTPG_ECOLI (EMBL:M38777) Escherichia coli heat shock protein HtpG, 624 aa; fasta scores: opt: 1304 Z-score: 1419.3 bits: 272.8 E(): 1.9e-71; 46.552% identity in 638 aa overlap. Contains Pfam match to entry PF02518 HATPase_c, Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase and 2x PF00183 HSP90, Hsp90 protein and match to Prosite entry PS00298 Heat shock hsp90 proteins family signature heat shock protein	Chaperone protein htpG	Chaperone protein htpG	HtpG	Residues 1 to 624 of 624 are 99 pct identical to residues 1 to 624 of a 624 aa protein from Escherichia coli O157:H7 ref: NP_308553.1 chaperone Hsp90 HtpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Class III heat-shock protein HtpG(molecular chaperone)	conserved gene chaperone Hsp90 HtpG	Class III heat-shock protein HtpG(molecular chaperone)	
HELPY00207	Beta-lactamase hcpA	Beta-lactamase hcpA precursor	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative secreted protein with protein prenylyltransferase domain	Sel1-like repeat	FOG: TPR repeat, SEL1 subfamily COG0790	putative polar organelle development protein similarity:fasta; with=UniProt:PODJ_CAUCR (EMBL:AE005877); Caulobacter crescentus.; podJ; Localization factor podJL (Polar organelle development protein) [Contains: Localization factor podJS].; length=974; id 32.143; 168 aa overlap; query 165-329; subject 697-864 similarity:fasta; with=UniProt:Q7CT78_AGRT5 (EMBL:AE008308); Agrobacterium tumefaciens (strain C58/ATCC 33970).; AGR_L_2168p.; length=370; id 62.931; 348 aa overlap; query 14-358; subject 27-368	cysteine-rich protein A	Putative uncharacterized protein	TPR repeat, SEL1 subfamily protein	Cysteine-rich protein A	Cysteine-rich protein A	Sel1 domain protein repeat-containing protein	Cysteine-rich protein A	Sel1 domain protein repeat-containing protein	Cysteine-rich protein A; putative signal peptide	
HELPY00208	Succinyl-diaminopimelate desuccinylase	SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	succinyl-diaminopimelate desuccinylase (EC 3.5.1.18)	Peptidase, M20/M25/M40 family	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Lin0289 protein	Succinyl-diaminopimelate desuccinylase	Residues 1 to 375 of 375 are 100 pct identical to residues 1 to 375 of a 375 aa protein from Escherichia coli K12 ref: NP_416967.1 N-succinyl-diaminopimelate deacylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	conserved gene N-succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	identified by similarity to SP:P24176; match to protein family HMM PF01546; match to protein family HMM TIGR01246 succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	identified by match to protein family HMM PF01546; match to protein family HMM TIGR01246 succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	conserved hypothetical protein	Succinyl-diaminopimelate desuccinylase	
HELPY00209	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	glucose inhibited division protein A	glucose-inhibited division protein	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA	putative N-terminal transit sequence glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	CDS_ID OB3490 glucose-inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	glucose inhibited division protein A (gidA)	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	Glucose inhibited division protein a	
HELPY00210	Sodium-dependent transporter	Putative membrane protein	CDS_ID OB2540 sodium-dependent transporter	Di-and tricarboxylate transporter	Sodium:sulfate symporter-family protein	Sodium-dependent dicarboxylate transporter sdcS	Molecular Function: transporter activity (GO:0005215), Biological Process: sodium ion transport (GO:0006814), Cellular Component: membrane (GO:0016020) Sodium/sulphate symporter	sodium:dicarboxylate cotransporter	hypothetical protein, similar to sodium-dependent transporter	Putative transporter	Sodium:sulfate symporter, DASS family	Putative transmembrane transport protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2009 putative sodium:sulfate symporter	hypothetical protein, similar to sodium-dependent transporter	Similar to: HI0608, Y608_HAEIN possible di-and tricarboxylate transporter	Similar to Oryctolagus cuniculus renal sodium/dicarboxylate cotransporter NaDC-1 SW:NDC1_RABIT (Q28615) (593 aa) fasta scores: E(): 2.3e-21, 35.54% id in 543 aa, and to Arabidopsis thaliana sodium sulfate or dicarboxylate transporter TR:Q9MAW4 (EMBL:AB043024) (540 aa) fasta scores: E(): 1.2e-31, 33.19% id in 482 aa putative sodium:sulfate symporter	Best Blastp Hit: pir||G81156 transporter, NadC family NMB0792 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226025|gb|AAF41205.1| (AE002433) transporter, NadC family [Neisseria meningitidis MC58] COG0471 Cation transporters putative transport protein	identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785 sodium-dependent transporter	similar to gi|49484158|ref|YP_041382.1| [Staphylococcus aureus subsp. aureus MRSA252], percent identity 79 in 511 aa, BLASTP E(): 0.0 putative sodium:sulfate symporter	Sodium/sulphate symporter	Na/dicarboxylate cotransporter-like protein	Anion transporter	Sodium/sulphate symporter	sodium-dependent transporter identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785	anion transporter	probable sodium-sulfate symport protein	anion transporter	transcript_id=ENSDNOT00000003760	Di-and tricarboxylate transporters COG0471	
HELPY00211	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	conserved gene phosphatidate cytidyltransferase	phosphatidate cytidylyltransferase (CDP-diglyceride synthase)	identified by similarity to OMNI:VC2255; match to protein family HMM PF01148 phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	identified by match to protein family HMM PF01148 phosphatidate cytidylyltransferase	phosphatidate cytidylyltransferase (CDP-diglyceride synthase)	Similar to Streptomyces coelicolor putative integral membrane protein SCO5628 or SC6A9.39C SWALL:O86769 (EMBL:AL031035) (391 aa) fasta scores: E(): 1.7e-18, 35.44% id in 268 aa, and to Escherichia coli phosphatidate cytidylyltransferase CdsA or Cds or b0175 or z0186 or ecs0177 SWALL:CDSA_ECOLI (SWALL:P06466) (249 aa) fasta scores: E(): 1.5e-15, 33.85% id in 192 aa putative integral membrane phospholipid biosynthetic nucleotidyltransferase	phosphatidate cytidylyltransferase	ortholog to Escherichia coli bnum: b0175; MultiFun: Cell structure 6.1; Metabolism 1.6.1 phosphatidate cytidylyltransferase	Phosphatidate cytidylyl transferase	similar to gi|27467855|ref|NP_764492.1| [Staphylococcus epidermidis ATCC 12228], percent identity 86 in 259 aa, BLASTP E(): e-128 phosphatidate cytidylyltransferase	identified by similarity to SP:O31752; match to protein family HMM PF01148 phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	phosphatidate cytidylyltransferase	CDP-diacylglycerol synthetase	phosphatidate cytidylyltransferase identified by similarity to SP:O31752; match to protein family HMM PF01148	Phosphatidate cytidylyltransferase	CDP-diglyceride synthetase	phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148	CDP-diglyceride synthetase	CDP-diglyceride synthetase	CDP-diglyceride synthetase	High confidence in function and specificity	CdsA protein	
HELPY00212	1-deoxy-D-xylulose 5-phosphate reductoisomerase	deoxyxylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase)	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	similar to AE005865-9|AAK23892.1| percent identity: 43 in 388 aa putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	SC5H4.18, dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase, len: 418 aa; highly similar to SW:DXR_MYCTU (EMBL:Z74024) Mycobacterium tuberculosis 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.-) (DXP reductoisomerase) Dxr or MTCY274.01c, 436 aa; fasta scores: opt: 1079 z-score: 1175.5 E(): 0; 52.3% identity in 396 aa overlap and to TR:CAB60758 (EMBL:AJ250714) Zymomonas mobilis 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dxr, 388 aa; fasta scores: opt: 966 z-score: 1053.7 E(): 0; 44.0% identity in 389 aa overlap 1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	Residues 1 to 398 of 398 are 99 pct identical to residues 1 to 398 of a 398 aa protein from Escherichia coli K12 ref: NP_414715.1 putative ATP-binding component of a transport system	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	
HELPY00213	Putative uncharacterized protein	beta-1,4-N-acetylgalactosamyltransferase	conserved hypothetical protein putative glycosyltransferase hypothetical protein	beta-1,4-N-acetylgalactosaminyltransferase identified by match to protein family HMM PF06306	Putative uncharacterized protein	Beta-1,4-N-acetylgalactosamyltransferase	
HELPY00214	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized conserved protein, YbhB family	Putative uncharacterized protein	Putative uncharacterized protein lp_0358	Phosphatidylethanolamine-binding protein	conserved hypothetical protein	Putative	Ortholog of S. aureus MRSA252 (BX571856) SAR0943 conserved hypothetical protein	conserved hypothetical protein	Phospholipid-binding protein Hypothetical protein	Similar to Bacillus subtilis hypothetical protein YxkA TR:P94355 (EMBL:D83026) (168 aa) fasta scores: E(): 4.5e-26, 46.875% id in 160 aa, and to Pasteurella multocida hypothetical protein PM1470 TR:Q9CKY1 (EMBL:AE006183) (170 aa) fasta scores: E(): 2e-17, 44.286% id in 140 aa conserved hypothetical protein	identified by similarity to EGAD:108624; match to protein family HMM TIGR00481 conserved hypothetical protein TIGR00481	Hypothetical protein	conserved hypothetical protein identified by match to protein family HMM TIGR00481	truncated conserved hypothetical protein	YbhB and YbcL	phospholipid-binding protein	Conserved hypothetical protein	conserved hypothetical protein	Phospholipid-binding protein	Phospholipid-binding protein	conserved hypothetical protein Predicted phospholipid-binding protein High confidence in function and specificity	putative phosphatidylethanolamine-binding regulatory protein	Phospholipid-binding protein	Phospholipid-binding protein	Phospholipid-binding protein	Hypothetical protein	
HELPY00215	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00216	Cysteine desulfurase	Putative iron-sulfur cofactor synthesis protein/cysteine desulfurase nifS	nitrogenase cofactor synthesis protein nifS	Cysteine desulfurase NifS	NifS family enzyme	Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes	identified by match to protein family HMM PF00266 cysteine desulfurase, putative	Similar to many aminotransferases including: Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cysteine desulfurase IscS or b2530 or c3056 or z3797 or ecs3396 or sf2577 or s2749 SWALL:ISCS_ECOLI (SWALL:P39171) (404 aa) fasta scores: E(): 9.4e-25, 30.1% id in 382 aa and to Neisseria meningitidis cysteine desulfurase IscS or nmb1379 SWALL:ISCS_NEIMB (SWALL:Q9JYY0) (404 aa) fasta scores: E(): 8.1e-25, 30.72% id in 384 aa putative cysteine desulfurase	Cysteine desulfurase	Cysteine desulfurase	cysteine desulfurase; COG1104 nitrogenase metalloclusters biosynthesis protein	Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme	probable cysteine desulphurase	Aminotransferase, class V:Aromatic amino acid beta-eliminating lyase/threonine aldolase	cysteine desulfurase	identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212 cysteine desulfurase	cysteine desulphurase	cysteine desulfurase identified by similarity to SP:P05341; match to protein family HMM PF00266; match to protein family HMM PF01212	cysteine desulfurase identified by similarity to SP:P05341; match to protein family HMM PF00266; match to protein family HMM PF01212	IscS cysteine desulfurase; COG1104, pfam00266	Aminotransferase, class V	aminotransferase, class V	pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) similar to nifS [Mesorhizobium loti]; similar to entrez-protein:CAD31372.1 Putative location:bacterial cytoplasm Psort-Score: 0.0749; go_function: transaminase activity [goid 0008483]; go_process: metabolism [goid 0008152]	Nitrogenase cofactor synthesis protein nifS	cysteine desulfurase	cysteine desulfurase identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212	Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes	hypothetical protein similarity to COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes(Evalue: 1E-113)	cysteine desulfurase identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212	
HELPY00217	NifU-like protein	Putative nifU protein	identified by similarity to SP:P05343; match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324 NifU family protein	Similar to Campylobacter jejuni NifU protein homolog CJ0239C SWALL:Q9PIQ5 (EMBL:AL139074) (323 aa) fasta scores: E(): 2.6e-09, 25.16% id in 310 aa, and to Rhodobacter sphaeroides nitrogen fixation protein NifU SWALL:NIFU_RHOSH (SWALL:Q01180) (246 aa) fasta scores: E(): 0.00085, 24.51% id in 204 aa, and to Chlamydia pneumoniae NifU-related protein CPN0861 or CPJ0861 SWALL:Q9Z745 (EMBL:AE001667) (266 aa) fasta scores: E(): 2.3e-70, 64.39% id in 264 aa putative NifU-related protein	NifU-like protein	Putative	Fe-S cluster assembly protein NifU	Fe-S cluster assembly protein NifU	Fe-S cluster assembly protein NifU identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; match to protein family HMM TIGR02000	Fe-S cluster assembly protein NifU	Fe-S cluster assembly protein NifU identified by similarity to SP:P20628; match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; match to protein family HMM TIGR02000	nitrogen-fixing NifU-like	Nitrogen-fixing NifU-like-like	NifU-related protein	Nitrogen-fixing NifU-like protein	nifU-like protein	NifU homolog involved in Fe-S cluster formation	nitrogen-fixing NifU-like	iscU protein	nitrogen fixation protein NifU identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324	Fe-S cluster assembly protein NifU	nifU-like protein (P23121) Nitrogen fixation protein nifU High confidence in function and specificity	probable nitrogen fixation protein NifU Probable nitrogen fixation protein NifU. Homology to nifU of A. vinelandii of 67% (sprot|NIFU_AZOVI). INVOLVED IN THE FORMATION OR REPAIR OF [FE-S] CLUSTERS PRESENT IN IRON-SULFUR PROTEINS. Pfam: NifU-like N-terminal domain, NifU-like domain no signal peptide no TMHs High confidence in function and specificity	nitrogen-fixing NifU domain protein PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein KEGG: rpc:RPC_4452 nitrogen-fixing NifU-like	Fe-S cluster assembly protein NifU TIGRFAM: Fe-S cluster assembly protein NifU PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein KEGG: gme:Gmet_0991 Fe-S cluster assembly protein NifU	Fe-S cluster assembly protein NifU	NifU family protein identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324	Fe-S cluster assembly protein NifU	Fe-S cluster assembly protein NifU TIGRFAM: Fe-S cluster assembly protein NifU PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein KEGG: sat:SYN_02125 IscU protein	
HELPY00218	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
HELPY00219	DNA repair protein radA homolog	DNA repair protein	DNA repair protein radA	DNA repair protein radA homolog	DNA repair protein RadA	DNA repair protein radA	DNA REPAIR PROTEIN RADA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	CDS_ID OB0094 DNA repair protein	similar to AE002432-2|AAF41195.1| percent identity: 43 in 459 aa putative DNA repair protein	DNA repair protein radA	DNA repair protein RadA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA homolog	SCE94.02, possible DNA repair protein, len: 469aa; similar to many eg. SW:RADA_ECOLI RadA, DNA repair protein (mechanism unknown) from Escherichia coli (460 aa) fasta scores; opt: 1218, z-score: 1309.3, E(): 0, (41.4% identity in 452 aa overlap). Contains Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). putative DNA repair protein	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA homolog	DNA repair protein radA homolog	DNA repair protein	
HELPY00220	Peptide methionine sulfoxide reductase msrA/msrB	Peptide methionine sulfoxide reductase	Possible msrA, pms; peptide methionine sulfoxide reductase	PEPTIDE METHIONINE SULFOXIDE REDUCTASE	Peptide methionine sulfoxide reductase msrA/msrB	Similar to Porphyromonas gingivalis W83 peptide methionine sulfoxide reductase MsrA or PG2088 SWALL:AAQ67048 (EMBL:AE017179) (352 aa) fasta scores: E(): 8.9e-93, 64.62% id in 359 aa, and to Actinobacillus actinomycetemcomitans peptide methionine sulfoxide reductase MsrA/MsrB MsrAB SWALL:MSAB_ACTAC (SWALL:Q9AL99) (356 aa) fasta scores: E(): 4e-57, 56.49% id in 331 aa putative peptide methionine sulfoxide reductase	identified by similarity to SP:P14930; match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00401 peptide methionine sulfoxide reductase MsrA/MsrB	Peptide methionine sulfoxide reductase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12096194; Product type e : enzyme probable secreted protein-methione-sulfoxide reductase with methionine-S-sulfoxide and methionine-R-sulfoxide reductase activity; putative signal peptide MSYQGLIYLSSVAILFSASSVA	peptide methionine sulfoxide reductase	putative peptide methionine sulfoxide reductase MsrA/MsrB pfam01625, pfam01641	peptide methionine sulfoxide reductase	peptide methionine sulfoxide reductase	hypothetical protein similarity to COG0225 Peptide methionine sulfoxide reductase(Evalue: 9E-56)	peptide methionine sulfoxide reductase msrA/msrB N-terminal section belongs to the msrA Met sulfoxide reductase family, and the C-terminal section belongs to the msrB Met sulfoxide reductase family; identified by similarity to SP:P35593; match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401	peptide methionine sulfoxide reductase MsrA/msrB identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401	(Q9ZMK8) Peptide methionine sulfoxide reductase High confidence in function and specificity	peptide methionine sulfoxide reductase KEGG: neu:NE1701 peptide methionine sulfoxide reductase TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B	Peptide methionine sulfoxide reductase msrA/msrB, putative	Peptide methionine sulfoxide reductase	Hypothetical protein	Peptide methionine sulfoxide reductase	Methionine sulfoxide reductase MsrA-B	Putative peptide methionine sulfoxide reductase	Peptide methionine sulfoxide reductase, PMSR	Peptide methionine sulfoxide reductase msrA/msrB	Peptide methionine sulfoxide reductase MsrA/msrB	Peptide methionine sulfoxide reductase MsrA/msrB	Peptide methionine sulfoxide reductase MsrA/msrB	
HELPY00222	Conserved hypothetical integral membrane protein	CDS_ID OB2648 hypothetical protein	similar to AP002999-43|BAB49358.1| percent identity: 33 in 252 aa conserved hypothetical protein	Lin0630 protein	hypothetical membrane protein, conserved, DUF81 family	Probable transmembrane protein	Hypothetical protein SE0133	Permease protein	Putative uncharacterized protein TTHA0785	conserved hypothetical protein	Putative	Ortholog of S. aureus MRSA252 (BX571856) SAR0048 putative membrane protein	conserved membrane protein	identified by similarity to OMNI:NTL01LI0626; match to protein family HMM PF01925 membrane protein, putative	Putative uncharacterized protein	Similar to Q8NQW1 Predicted permease from Corynebacterium glutamicum (250 aa). FASTA: opt: 472 Z-score: 553.4 E(): 5.6e-23 Smith-Waterman score: 472; 35.573 identity in 253 aa overlap. ORF ftt1423c conservered hypothetical membrane protein	identified by match to protein family HMM PF01925 putative membrane protein	Hypothetical membrane protein, conserved	identified by match to protein family HMM PF01925 membrane protein, putative	identified by match to protein family HMM PF01925 membrane protein, putative	Protein of unknown function DUF81	Protein of unknown function DUF81	Previously sequenced as Staphylococcus aureus hypothetical protein TR:BAB47613 (EMBL:AB037671) (214 aa) fasta scores: E(): 1.2e-68, 100.000% id in 214 aa. Similar to Bacillus subtilis hypothetical protein YrkJ SW:YRKJ_BACSU (P54437) (261 aa) fasta scores: E(): 4.4e-26, 41.364% id in 220 aa. CDS is truncated at the C-terminus in comparison to the B. subtilis protein.  Probable gene remnant pseudo putative membrane protein (fragment)	putative membrane protein identified by match to protein family HMM PF01925	putative membrane protein identified by match to protein family HMM PF01925	conserved hypothetical protein	Protein of unknown function DUF81	putative membrane protein identified by match to protein family HMM PF01925	protein of unknown function DUF81 PFAM: protein of unknown function DUF81 KEGG: cef:CE0317 hypothetical protein	
HELPY01313	Outer membrane protein	Putative Outer membrane protein	
HELPY00223	Conserved hypothetical integral membrane protein	similar to AX067031-1|CAC26743.1| percent identity: 72 in 492 aa putative transport protein	Sulfate permease	SCE39.26, possible integral membrane transporter, len: 499aa; similar to many eg. TR:Q50443 (EMBL:U50335) ORF2 from Mycobacterium smegmatis (498 aa) fasta scores; opt: 2027, z-score: 2225.4, E(): 0, (64.0% identity in 478 aa overlap) and TR:O07488 (EMBL:Y13308) proposed sulphate permease from Yersinia enterocolitica (492 aa) fasta scores; opt: 1564, z-score: 1718.0, E(): 0, (51.0% identity in 482 aa overlap). Contains Pfam match to entry PF00916 Sulfate_transp, Sulfate transporter family. Also contains several possible membrane spanning hydrophobic regions. putative integral membrane transporter	sulfate permease	Sulfate permease	Sulfate permease	conserved hypothetical putative Sulfate transporter/antisigma-factor antagonist YbaR	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark sulfate permease	Sulfate permease	Putative	putative sulfate transporter	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative sulfate transporter	COG0659 sulfate permease	sulfate transporter	Probable sulfate permease, MFS superfamily	sulfate permease	Sulfate permease	sulfate transporter	putative sulfate permease family protein	hypothetical protein, similar to sulfate permease [truncated]	identified by match to protein family HMM PF00916; match to protein family HMM PF01740 sulfate permease family protein	Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter	Putative sulfate transporter	similar to gi|32470568|ref|NP_863238.1| [Staphylococcus epidermidis ATCC 12228], percent identity 70 in 482 aa, BLASTP E(): 0.0 sulfate permease	antisigma-factor antagonist, STAS	Sulphate transporter	putative sulfate transporter	sulphate transporter	
HELPY00224	Outer membrane protein	outer membrane protein HopA	Outer membrane protein	Outer membrane protein	Outer membrane protein HopA	
HELPY00225	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-D-manno-octulosonate cytidylyltransferase	3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	Residues 1 to 248 of 248 are 99 pct identical to residues 1 to 248 of a 248 aa protein from Escherichia coli K12 ref: NP_415438.1 CTP:CMP-3-deoxy-D-manno-octulosonate transferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	conserved gene 3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	hypothetical protein	identified by match to protein family HMM PF02348 3-deoxy-D-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	identified by similarity to SP:P04951; match to protein family HMM PF02348; match to protein family HMM TIGR00466 3-deoxy-D-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase protein	3-deoxy-manno-octulosonate cytidylyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-deoxy-manno-octulosonate cytidylyltransferase	
HELPY00226	Putative uncharacterized protein	Putative	disulphide isomerase	conserved hypothetical protein putative protein-disulphide isomerase Function unclear	Putative uncharacterized protein	Disulphide isomerase	Disulphide isomerase	
HELPY00227	UPF0323 lipoprotein HP_0232	UPF0323 lipoprotein HH_0014	Hypothetical UPF0323 lipoprotein JHP0217 precursor	Putative uncharacterized protein	motility protein	lipoprotein	secreted protein involved in flagellar motility High confidence in function and specificity	lipoprotein, putative	Putative uncharacterized protein	Putative lipoprotein	Putative uncharacterized protein	Conserved hypothetical lipoprotein	Putative uncharacterized protein	Lipoprotein	Putative uncharacterized protein	Motility protein	Conserved hypothetical lipoprotein	UPF0323 lipoprotein HPP12_0232	Secreted protein involved in flagellar motility; putative peptide signal	
HELPY00228	Putative uncharacterized protein	Putative uncharacterized protein VP1067	Putative uncharacterized protein	Putative uncharacterized protein	Probable synthetase/amidase	identified by match to protein family HMM PF03738 glutathionylspermidine synthase family protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark synthetase/amidase	IPR005494: Glutathionylspermidine synthase putative glutathionylspermidine synthase	Putative uncharacterized protein ygiC	Synthetase/amidase	Putative	Putative uncharacterized protein	Similar to: HI0929, YGIC_HAEIN predicted glutathionylspermidine synthase	synthetase/amidase	Hypothetical protein	glutathionylspermidine synthetase	identified by match to protein family HMM PF03738 glutathionylspermidine synthase family protein	identified by match to protein family HMM PF03738 glutathionylspermidine synthase family protein	Glutathionylspermidine synthase	conserved hypothetical protein	Glutathionylspermidine synthase	conserved hypothetical protein	Glutathionylspermidine synthase	Glutathionylspermidine synthase	Glutathionylspermidine synthase COG0754	putative glutathionylspermidine synthetase codons 40 to the C-terminus are similar to codons 270 to 630 of Crithidia fasciculata trypanothione synthetase SWALL:TRYS_CRIFA (SWALL:O60993) (652 aa), and entire protein is similar to Erwinia carotovora subsp.  atroseptica SCRI1043 putative glutathionylspermidine synthase SWALL:Q6DAC7 (EMBL:BX950851) (386 aa) similarity:fasta; SWALL:TRYS_CRIFA (SWALL:O60993); Crithidia fasciculata; trypanothione synthetase; trS; length 652 aa; id=28.72; ungapped id=31.61; E()=5.3e-12; 362 aa overlap; query 44-378 aa; subject 271-626 aa similarity:fasta; SWALL:Q6DAC7 (EMBL:BX950851); Erwinia carotovora subsp. atroseptica SCRI1043; putative glutathionylspermidine synthase; length 386 aa; id=52.71; ungapped id=53.4; E()=3.3e-81; 387 aa overlap; query 1-384 aa; subject 1-385 aa	putative glutathionylspermidine synthase	Glutathionylspermidine synthase	glutathione spermidine synthetase	
HELPY00229	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative	conserved hypothetical integral membrane protein	conserved hypothetical integral membrane protein putative integral membrane protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved hypothetical integral membrane protein	Integral membrane protein	
HELPY00230	Putative beta-lactamase hcpE	Putative uncharacterized protein	similar to BR1708, conserved hypothetical protein conserved hypothetical protein	Putative beta-lactamase hcpE precursor	Putative uncharacterized protein	Sel1-like repeat	Sel1-like repeat	Sel1-like repeat	cysteine-rich protein E	TPR repeat SEL1 subfamily	conserved hypothetical protein Specificity unclear	conserved hypothetical protein identified by similarity to GB:CAH12461.1	Sel1 domain protein repeat-containing protein	Tyrosine protein kinase:Serine/threonine protein kinase:Sel1-like repeat PFAM: Sel1 domain protein repeat-containing protein KEGG: nmu:Nmul_A0104 Sel1-like repeat	Sel1-like repeat PFAM: Sel1-like repeat KEGG: mlo:mlr3914 hypothetical protein	Putative uncharacterized protein	Sel1 domain protein repeat-containing protein precursor	Hypothetical protein, conserved	jgi|Lacbi1|143662|gww1.1.313.1	Sel1 domain protein repeat-containing protein	Sel1 domain protein repeat-containing protein precursor	Sel1 domain protein repeat-containing protein PFAM: Sel1 domain protein repeat-containing protein KEGG: plt:Plut_0843 Sel1-like repeat	Putative uncharacterized protein	Sel1 domain protein repeat-containing protein	Cysteine-rich protein E	Sel1-like repeat	putative exported protein	Cysteine-rich protein E	
HELPY00231	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative periplasmic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00232	Porphobilinogen deaminase	porphobilinogen deaminase (hydroxymethylbilane synthase)	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	CDS_ID OB2068; porphobilinogen deaminase hydroxymethylbilane synthase	similar to AE002066-4|AAF11898.1| percent identity: 42 in 297 aa putative hydroxymethylbilane synthase	hydroxymethylbilane synthase	Porphobilinogen deaminase	Putative porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Residues 1 to 320 of 320 are 99 pct identical to residues 1 to 320 of a 320 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290433.1 porphobilinogen deaminase = hydroxymethylbilane synthase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	HemC protein	Porphobilinogen deaminase	Porphobilinogen deaminase	
HELPY00233	Prolyl-tRNA synthetase	proline-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	similar to AE000686-4|AAC06648.1| percent identity: 39 in 582 aa putative prolyl-tRNA synthetase	proline-tRNA ligase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	SC5H4.23, proS, prolyl tRNA synthetase, len: 567 aa; highly similar to SW:SYP_ECOLI (EMBL:X55518) Escherichia coli prolyl-tRNA synthetase (EC 6.1.1.15) ProS, 572 aa; fasta scores: opt: 1403 z-score: 1520.4 E(): 0; 41.8% identity in 574 aa overlap. Contains Pfam match to entry PF00587 tRNA-synt_2b, tRNA synthetase class II (G, H, P, S and T) and match to Prosite entry PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1 prolyl tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	
HELPY00234	Glutamyl-tRNA reductase	glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	CDS_ID OB2070 glutamyl-tRNA reductase	similar to U00018-18|AAA17243.1| percent identity: 44 in 443 aa putative glutamyl-tRNA reductase HemA	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Residues 67 to 484 of 484 are 99 pct identical to residues 1 to 418 of a 418 aa protein from Escherichia coli O157:H7 ref: NP_309742.1 glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	glutamyl tRNA reductase	conserved gene glutamyl tRNA reductase	glutamyl tRNA reductase	identified by similarity to EGAD:15289; match to protein family HMM PF00745; match to protein family HMM PF05200; match to protein family HMM PF05201; match to protein family HMM TIGR01035 glutamyl-tRNA reductase	
HELPY00235	Octaprenyl-diphosphate synthase	solanesyl diphosphate synthase	heptaprenyl diphosphate synthasecomponent II (spore germination protein C3)	Octaprenyl-diphosphate synthase	FARNESYL PYROPHOSPHATE SYNTHETASE , GERANYLTRANSTRANSFERASE	CDS_ID OB1788; spore germination protein C3 heptaprenyl diphosphate synthase component II	Putative uncharacterized protein	Octaprenyl-diphosphate synthase	Geranylgeranyl pyrophosphate synthase	Probable heptaprenyl diphosphate synthase component II	OCTAPRENYL-DIPHOSPHATE SYNTHASE	Lin2790 protein	Octaprenyl-diphosphate synthase	Residues 1 to 323 of 323 are 100 pct identical to residues 1 to 323 of a 323 aa protein from Escherichia coli K12 ref: NP_417654.1 octaprenyl diphosphate synthase	Octaprenyl-diphosphate synthase	Heptaprenyl diphosphate syntase component II	Probable octaprenyl-diphosphate synthase (Octaprenyl pyrophosphate synthase) protein	Octaprenyl-diphosphate synthase	similar to octaprenyl-diphosphate synthase hypothetical protein	conserved gene octaprenyl diphosphate synthase IspB	similar to octaprenyl-diphosphate synthase hypothetical protein	Trans-hexaprenyltranstransferase, component II	identified by match to protein family HMM PF00348 polyprenyl synthetase	identified by similarity to GB:CAD24417.1; match to protein family HMM PF00348 decaprenyl diphosphate synthase	Octaprenyl-diphosphate synthase	Heptaprenyl diphosphate syntase component II	Geranylgeranyl pyrophosphate synthase	identified by similarity to SP:Q53479; match to protein family HMM PF00348 polyprenyl synthetase family protein	InterProMatches:IPR000092, IPR000092; menaquinone biosynthesis, Biological Process: isoprenoid biosynthesis (GO:0008299),Biological Process: isoprenoid biosynthesis (GO:0008299) heptaprenyl diphosphate synthase component II	
HELPY00236	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00237	Putative uncharacterized protein	Putative	hypothetical protein	hypothetical protein predicted by Glimmer/Critica (Q55790) Hypothetical protein slr0074 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00238	DNA protection during starvation protein	hypothetical protein	starvation-induced protein controlled by sigma-B (general stress protein 20U)	Putative peroxide resistance protein	Ferritin-like domain protein	DNA PROTECTION DURING STARVATION PROTEIN	Peroxide resistance protein Dpr	NEUTROPHIL-ACTIVATING PROTEIN A	Putative uncharacterized protein	Non-heme iron-containing ferritin	Possible DNA-binding stress protein	Stress-and starvation-induced gene controlled by sigma-B	DPS family protein	Putative uncharacterized protein RP806	DNA protection during starvation protein	DNA-binding stress protein	General stress protein 20U	Neutrophil activating factor	neutrophil activating protein	Dna protection during starvation or oxydative stress protein	Weakly similar to DNA-binding ferritin-like protein (oxidative damage protectant) hypothetical protein	conserved gene DNA binding stress protein	Weakly similar to DNA-binding ferritin-like protein (oxidative damage protectant) hypothetical protein	Stress induced DNA binding protein	identified by match to protein family HMM PF00210; match to protein family HMM PF02047 Dps family protein	Dps; Iron-binding ferritin-like antioxidant protein; Ferroxidase Non-specific DNA-binding protein	probable DNA-binding stress protein	peroxide resistance protein,non-heme iron-containing ferritin	Putative uncharacterized protein	
HELPY00239	Sensor protein	Sensor protein	Sensor protein	Sensor protein	identified by similarity to GP:13359310; match to protein family HMM PF00512; match to protein family HMM PF02518 sensor histidine kinase	Sensor protein	Putative histidine kinase sensor protein	Similar to Pseudomonas aeruginosa sensor protein PilS or PA4546 SWALL:PILS_PSEAE (SWALL:P33639) (530 aa) fasta scores: E(): 8.3e-13, 25.92% id in 324 aa, and to Bacteroides thetaiotaomicron putative two-component system sensor histidine kinase BTt0689 SWALL:AAO75796 (EMBL:AE016928) (438 aa) fasta scores: E(): 7.4e-123, 73.79% id in 435 aa putative two-component system, sensor kinase	identified by similarity to OMNI:VC2136; match to protein family HMM PF00512; match to protein family HMM PF02518 flagellar regulatory protein B	sensor histidine kinase, C-terminal region; possible sporulation kinase	Sensor protein	Sensor protein	histidine kinase sensor protein	two-component system sensor histidine kinase	sensor histidine kinase identified by match to protein family HMM PF00512; match to protein family HMM PF02518	High confidence in function and specificity	sensor histidine kinase identified by match to protein family HMM PF00512; match to protein family HMM PF02518	sensor histidine kinase	Sensor protein	Sensor protein	Sensor protein	Sensor protein	Sensor protein	Sensor protein	Sensor protein	Sensor protein	Sensor protein	Sensor protein	Sensor protein	
HELPY00240	Uncharacterized protein HP_0245	Hypothetical protein JHP0230	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein Specificity unclear	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00241	Flagellar P-ring protein	Flagellar P-ring protein	flagellar P-ring protein FlgI	Flagellar P-ring protein	Flagellar P-ring protein	Flagellar P-ring protein	Flagellar P-ring protein	Residues 2 to 366 of 366 are 99 pct identical to residues 1 to 365 of a 365 aa protein from Escherichia coli K12 ref: NP_415598.1 homolog of Salmonella P-ring of flagella basal body	Flagellar P-ring protein	Flagellar P-ring protein	Flagellar P-ring protein	Flagellar P-ring protein	flagellar P-ring protein precursor FlgI	conserved gene flagellar P-ring protein (precursor) FlgI	flagellar P-ring protein precursor FlgI	identified by similarity to SP:P33979; match to protein family HMM PF02119 flagellar P-ring protein FlgI	identified by similarity to SP:P33979; match to protein family HMM PF02119 flagellar P-ring protein FlgI	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar protein	IPR001782: Flagellar P-ring protein putative flagella basal body protein	similar to Salmonella typhi CT18 flagellar P-ring protein precursor flagellar P-ring protein precursor	Flagellar P-ring protein	Flagellar P-ring protein	Flagellar P-ring protein precursor	Basal body P-ring protein; COG1706 flagellar P-ring protein precursor	flagellar P-ring protein FlgI	Flagellar P-ring protein	Flagellar basal-body P-ring protein	Flagellar P-ring protein	Flagellar P-ring protein	
HELPY00242	ATP-dependent RNA helicase, DEAD-box family	Putative ATP-dependent RNA helicase	Putative ATP-dependent RNA helicase, DEAD-box family	CDS_ID OB0609 ATP-dependent RNA helicase	ATP-DEPENDENT RNA HELICASE	Putative ATP-dependent RNA helicase	ATP-dependent RNA helicase, DEAD/DEAH box family	Probable RNA helicase	ATP-dependent RNA helicase	Cold-shock DEAD box protein A homolog	Lin0859 protein	DeaD protein	Probable atp-dependent rna helicase protein	Similar to ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A) hypothetical protein	conserved gene ATP-dependent RNA helicase	Similar to ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A) hypothetical protein	ATP-dependent RNA helicase	Superfamily II DNA/RNA helicase	ATP dependent RNA helicase protein	Cold-shock DEAD box protein A homolog	Mb1285, deaD, len: 563 aa. Equivalent to Rv1253, len: 563 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 563 aa overlap). Probable Dead, Cold-shock DEAD-box protein A homolog, similar to many e.g. DEAD_ECOLI|P23304 Escherichia coli (646 aa), FASTA scores: opt: 1490, E(): 0, (46.7% identity in 578 aa overlap); similar to Mycobacterium tuberculosis Rv3211.  Contains PS00017 ATP/GTP-binding site motif A, PS00039 DEAD-box subfamily ATP-dependent helicases signature.  BELONGS TO THE DEAD BOX FAMILY HELICASE. PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent RNA helicase deaD homolog)	Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026) probable ATP-dependent RNA helicase YdbR	ATP-dependent RNA helicase	Cold-shock DEAD-box protein A, inducible ATP- independent RNA helicase	YdbR ATP-dependent RNA helicase-like protein	ATP-dependent RNA helicase DeaD	ATP-DEPENDENT RNA HELICASE DEAD	identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271 ATP-dependent RNA helicase DeaD	Probable ATP-dependent RNA helicase Conserved hypothetical protein	
HELPY00243	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein MYPU_0680	HflK protein, putative	identified by similarity to OMNI:NTL01HP00232; match to protein family HMM PF01145 SPFH domain / Band 7 family protein	Hydrolase serine protease transmembrane subunit K protein	Putative uncharacterized protein	Protease subunit hflK	Putative	best blastp match pir||E75514 B-cell receptor associated protein-related protein -- Deinococcus radiodurans (strain R1) hypothetical phage protein	stomatin-like protein	HflK	conserved hypothetical protein	HflC protein	Band 7 protein	SPFH domain, Band 7 family protein	membrane protease	hydrolase serine protease transmembrane subunit K protein similar to hflK (SMc01441) [Sinorhizobium meliloti] Similar to swissprot:Q92NQ8 Putative location:bacterial inner membrane Psort-Score: 0.5182	band 7 protein PFAM: band 7 protein KEGG: fra:Francci3_1352 band 7 protein	Band 7 protein	Band 7 protein	hypothetical protein	Hypothetical protein	hypothetical protein similarity to COG0330 Membrane protease subunits, stomatin/prohibitin homologs(Evalue: 3E-36)	bacterial HflC protein	band 7 family protein	SPFH domain/Band 7 family protein identified by match to protein family HMM PF01145	Membrane protease	spfh domain identified by match to protein family HMM PF01145	
HELPY00244	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00245	Oligopeptide ABC transporter, ATP-binding protein	Peptide ABC transporter, ATP-binding protein	identified by similarity to SP:P33916; match to protein family HMM PF00005 oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein	IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter putative ATPase components of ABC-type transport system, contain duplicated ATPase domain	similar to Salmonella typhi CT18 hypothetical ABC transporter ATP-binding protein hypothetical ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein	Peptide ABC transporter, ATP-binding protein	Glutathione import ATP-binding protein gsiA	identified by match to protein family HMM PF00005 ABC transporter, ATP-binding protein	ABC transporter related	putative ATP-binding component of ABC transporter similarity:fasta; with=UniProt:Q8UIV1 (EMBL:A97382); Agrobacterium tumefaciens (strain C58/ATCC 33970).; ABC transporter, nucleotide binding/ATPase protein (AGR_C_320p).; length=549; id 83.364; 541 aa overlap; query 5-545; subject 9-549	ABC transporter related	ABC transporter component	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like KEGG: eba:ebA5654 ABC transporter, ATP-binding protein, ev=1e-164, 48% identity TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like: (9.3e-30) PFAM: ABC transporter related: (1.8e-69) Oligopeptide/dipeptide ABC transporter-like: (2.8e-28) SMART: ATPase: (3.2e-23)	probable peptide ABC transporter, ATP binding protein similar to AGR_C_320p [Agrobacterium tumefaciens], SMc02829 [Sinorhizobium meliloti] and BR0006 [Brucellasuis 1330] Similar to swissprot:Q8UIV1 Putative location:bacterial cytoplasm Psort-Score: 0.2772; go_component: membrane [goid 0016020]; go_function: ATP binding [goid 0005524]; go_function: nucleotide binding [goid 0000166]; go_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; go_process: transport [goid 0006810]	Glutathione import ATP-binding protein gsiA	oligopeptide permease ATPase protein	ABC transporter-related protein	oligopeptide/dipeptide ABC transporter, ATPase subunit KEGG: bur:Bcep18194_B1868 ABC dipeptide/oligopeptide/nickel family transporter, ATPase subunit TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein SMART: AAA ATPase	ABC transporter related PFAM: ABC transporter related SMART: AAA ATPase KEGG: bcn:Bcen_6371 ABC transporter related	ABC transporter, ATPase subunit	Hypothetical protein	ABC transporter related PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like SMART: ATPase KEGG: bja:bll6709 probable ATP-binding protein	ABC transporter related PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein SMART: AAA ATPase KEGG: pol:Bpro_2423 ABC transporter related	ABC-type uncharacterized transport system, duplicated ATPase component	ABC transporter related	ABC transporter related	ABC transporter related	Putative ATP-binding component of a transport system	
HELPY00246	Oligopeptide ABC transporter, permease protein	OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC	Putative transport system permease protein	peptide ABC transporter, permease protein	Peptide ABC transporter, permease protein	ABC-type transport system, permease component	Peptide ABC transporter, permease protein	Dipeptide ABC transport system permease protein	Residues 1 to 341 of 341 are 99 pct identical to residues 1 to 341 of a 341 aa protein from Escherichia coli O157:H7 ref: NP_311098.1 putative transport system permease protein	Putative ABC transporter integral membrane subunit	DppC	Probable transmembrane abc transporter protein	identified by similarity to SP:P33915; match to protein family HMM PF00528 oligopeptide/dipeptide uptake family ABC transporter, permease protein	Peptide ABC transporter	IPR000515: Binding-protein-dependent transport systems inner membrane component putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component	similar to Salmonella typhi CT18 putative binding-protein-dependent transporter putative binding-protein-dependent transporter	Oligopeptide ABC transporter	similar to BR0007, ABC transporter, permease protein ABC transporter, permease protein	ABC transporter, permease	ABC oligo-dipeptide/nickel transporter, permease subunit	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative oligopeptide transport protein (ABC superfamily, membrane)	oligopeptide transport system permease protein OppC	Putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component	Binding-protein-dependent transport systems inner membrane component	Binding-protein-dependent transport systems inner membrane component	Code: R; COG: COG4239 putative transport system permease protein	Binding-protein-dependent transport systems inner membrane component	Citation: PMID: 11341969 Biochim Biophys Acta. 2001 Jan 15;1499(3):222-31. ABC peptide transporter, inner membrane subunit	Code: R; COG: COG4239 putative transport system permease protein	
HELPY00247	Outer membrane protein	outer membrane protein HopF	outer membrane protein 27 hypothetical protein	Outer membrane protein	Outer membrane protein	Outer membrane protein HopF	
HELPY00249	Outer membrane protein	outer membrane protein HopG	outer membrane protein 26 hypothetical protein	Outer membrane protein HopG	Outer membrane protein	Outer membrane protein HopG	
HELPY00250	Adenylosuccinate synthetase	adenylosuccinate synthase	adenylosuccinate synthase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	CDS_ID OB3453 adenylosuccinate synthase	similar to AL583918-8|CAC29788.1| percent identity: 61 in 429 aa adenylosuccinate synthetase	adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	SCH10.07c, purA, probable adenylosuccinate synthetase, len: 426 aa; similar to many e.g.  SW:PURA_ECOLI (EMBL:J04199), PurA, Escherichia coli adenylosuccinate synthetase (431 aa), fasta scores; opt: 1421 z-score: 1608.0 E(): 0, 50.5% identity in 420 aa overlap. Contains Pfam match to entry PF00709 Adenylsucc_synt, Adenylosuccinate synthetase, score 742.40, E-value 1.9e-219, PS00513 Adenylosuccinate synthetase active site and PS01266 Adenylosuccinate synthetase GTP-binding site adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	Adenylosuccinate synthetase	
HELPY00251	Putative uncharacterized protein	hypothetical protein	hypothetical protein predicted by Glimmer/Critica hypothetical protein	PP-loop family protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00252	Conserved hypothetical secreted protein	Putative	PDP protein	conserved hypothetical secreted protein	pdp protein	conserved hypothetical protein High confidence in function and specificity	conserved hypothetical protein	Putative uncharacterized protein	Putative periplasmic protein	MTA/SAH nucleosidase	Pdp protein	Conserved hypothetical secreted protein	Conserved hypothetical secreted protein	Pdp protein	Putative uncharacterized protein	Secreted protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00253	Putative zinc metalloprotease HP_0258	hypothetical conserved protein	Putative protease	Putative zinc metalloprotease SpyM3_1689/SPs1691	Membrane-associated zinc metalloprotease, putative	Membrane-spanning metalloprotease	Putative zinc metalloprotease BMEI0829	Putative Eep protein-like protein	Putative membrane-associated Zn-dependent protease	Putative membrane protein	CDS_ID OB1592 hypothetical protein	similar to AL008883-13|CAA15531.1| percent identity: 43 in 400 aa putative membrane-associated zinc metalloprotease	hypothetical protein	Membrane-associated zinc metalloprotease, putative	Probable protease eep	Membrane endopeptidase, M50 family	Zinc metalloprotease	Putative zinc metalloprotease CA_C1796	Zinc metalloprotease	Zinc metalloprotease rasP	SC5H4.19, possible metalloprotease, len: 430 aa; similar to TR:O83609 (EMBL:AE001235) Treponema pallidum zinc protease, putative TP0600, 450 aa; fasta scores: opt: 181 z-score: 205.4 E(): 0.00056; 28.0% identity in 400 aa overlap. Contains Pfam match to entry PF00595 PDZ, PDZ domain (Also known as DHR or GLGF) and match to Prosite entry PS00142 Neutral zinc metallopeptidases, zinc-binding region signature and also possible hydrophobic membrane spanning regions putative metalloprotease	Predicted membrane-associated Zn-dependent protease 1	Membrane-associated Zn-dependent protease-like protein	Predicted membrane-associated Zn-dependent proteases 1	Putative zinc metalloprotease RP161	Putative zinc metalloprotease Lin1355	Membrane-associated zinc metalloprotease	Protease rseP	Membrane-associated Zn-dependent proteases 1	
HELPY00254	Exodeoxyribonuclease 7 large subunit	exodeoxyribonuclease VII large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	CDS_ID OB1879 exodeoxyribonuclease VII large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	SCK7.29c, possible exoribonuclease large subunit, len: 402 aa; similar to TR:O53456 (EMBL:AL021897) Mycobacterium tuberculosis exonuclease VII large subunit XseA or MTV017.61c, 415 aa; fasta scores: opt: 1318 z-score: 1486.0 E(): 0; 52.3% identity in 407 aa overlap and to SW:EX7L_ECOLI (EMBL:J02599) Escherichia coli exodeoxyribonuclease large subunit (EC 3.1.11.6) XseA, 456 aa; fasta scores: opt: 610 z-score: 689.7 E(): 6e-31; 30.8% identity in 413 aa overlap putative exoribonuclease large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Residues 1 to 430 of 430 are 97 pct identical to residues 27 to 456 of a 456 aa protein from Escherichia coli K12 ref: NP_417004.1 exonuclease VII, large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exonuclease VII, large subunit	conserved gene exonuclease VII, large subunit	Exonuclease VII, large subunit	
HELPY00255	Adenine specific DNA methyltransferase	DNA methylase	conserved hypothetical protein	Adenine specific DNA methyltransferase	TYPE II DNA MODIFICATION ENZYME	type III adenine methyltransferase	type II restriction-modification methyltransferase (P12364) Type III restriction-modification system EcoP15I enzyme mod (EC 2.1.1.72) (EcoP15I methyltransferase) (M.EcoP15I) High confidence in function and specificity	Putative modification enzyme of type III restriction-modification system	Adenine specific DNA methylase Mod	Putative modification enzyme of type III restriction-modification system	Site-specific DNA-methyltransferase	DNA methylase	Type II DNA modification enzyme	Type III adenine methyltransferase	Adenine specific DNA methylase	Site-specific DNA-methyltransferase	Putative type III restriction-modification sys	Type III R-M system methyltransferase	Site-specific DNA-methyltransferase	TCGA site-specific m6A methyltransferase	Probable type III modification methyltransferase	predicted methyltransferase	
HELPY00256	Putative uncharacterized protein	
HELPY00257	Uncharacterized protein HP_0262	type II DNA modification enzyme	Endonuclease MjaVIP Specificity unclear	Type II site-specific deoxyribonuclease	Endonuclease MjaVIP	DNA modification methylase	Type II DNA modification enzyme	MjaVIP	Type II R-M system restriction endonuclease	
HELPY00258	Adenine specific DNA methyltransferase	type II DNA modification enzyme	adenine specific DNA methyltransferase High confidence in function and specificity	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	Putative modification methylase MjaV	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	DNA modification methylase-like protein	DNA methylase N-4/N-6 domain protein	Adenine specific DNA methyltransferase	TypeII DNA modification enzyme	Modification methylase MjaVI	Type II R-M system methyltransferase	DNA methylase	Non-functional cytosine methyltransferase	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	
HELPY00259	Chaperone protein clpB	ATP-dependent Clp protease ATPase subunit	Putative Clp protease	Putative endopeptidase Clp ATP-binding chain C	Clp protease ATP binding subunit	Putative Clp-family ATP-binding protease	Chaperone protein clpB	Class III stress response-related ATP-dependent Clp protease, ATP-binding subunit	ATP-dependent Clp protease ATP-binding subunit	CDS_ID OB0093; ATP-binding subunit ATP-dependent Clp protease	similar to AX065705-1|CAC26092.1| percent identity: 92 in 926 aa putative endopeptidase Clp ATP-binding chain C	ATPase, AAA family	ATP-dependent clp protease ATP-binding subunit clpA-like protein	Chaperone protein clpB	ATPases with chaperone activity clpC, two ATP- binding domain	ATP-dependent Clp protease, ATP-binding subunit	Class III stress response-related ATPase	ATP-dependent Clp protease ATP-binding subunit	Chaperone protein clpB	ATP-dependent clp protease, ATP-binding subunit clpB	ATP-dependent Clp protease ATP-binding subunit clpC	ATP-dependent serine proteinase, heat shock protein	Chaperone protein clpB	Chaperone protein clpB	ATP-dependent Clp protease, ATP-binding subunit ClpC	identified by similarity to EGAD:18028; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861 ATP-dependent Clp protease, ATP-binding subunit ClpC	ATP-dependent serine proteinase-heat shock protein	MecB ClpC	ATP-dependent Clp protease regulatory subunit ClpC	
HELPY00260	Cytochrome c biogenesis protein	Putative cytochrome C-type biogenesis protein	Cytochrome c biogenesis protein	CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA	Putative cytochrome C biogenesis protein	Putative cytochrome C biogenesis protein	similar to U00018-4|AAA17226.1| percent identity: 53 in 248 aa putative cytochrome C-type biogenesis protein CcsA	Putative holocytochrome c synthase	Cytochrome c-type biogenesis protein ccdA	SCD65.16, possible cytochrome biogenesis related protein, len: 253 aa; similar to SW:CCDA_BACSU (EMBL:X87845) Bacillus subtilis cytochrome C-type biogenesis protein CcdA, 235 aa: fasta scores: opt: 454 z-score: 507.4 E(): 8.5e-21; 33.3% identity in 228 aa overlap. Contains match to Prosite entry PS00086 Cytochrome P450 cysteine heme-iron ligand signature. Also contains possible hydrophobic membrane spanning regions putative cytochrome biogenesis related protein	Cytochrome c biogenesis protein	Cytochrome c-type biogenesis protein	CcdA Cytochrome c-type biogenesis protein	identified by similarity to GB:AAF26218.1; match to protein family HMM PF02683 cytochrome c-type biogenesis protein CcdA	CcsA	Cytochrome-c-type biogenesis protein	Cytochrome c biogenesis protein, putative	Mb0540, ccdA, len: 259 aa. Equivalent to Rv0527, len: 259 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 259 aa overlap). Possible ccdA, cytochrome C-type biogenesis protein, integral membrane protein, equivalent to Q49810|B2168_C1_192|S72890 hypothetical protein from Mycobacterium leprae (262 aa), FASTA scores: opt: 1341, E(): 0, (79.0% identity in 262 aa overlap). Also highly similar to others e.g. CAC08380.1 (253 aa); CCDA_BACSU|P45706 cytochrome C-type biogenesis protein from Bacillus subtilis (235 aa), FASTA scores: opt: 307, E(): 7.4e-13, (30.4% identity in 237 aa overlap); etc. SEEMS TO BELONG TO THE DSBD SUBFAMILY. Note that previously known as ccsA. POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA	Cytochrome c-type biogenesis protein CcdA	Cytochrome c biogenesis protein CcdA	similar to BRA0584, cytochrome c-type biogenesis protein CcdA CcdA, cytochrome c-type biogenesis protein CdcA	Putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN	Putative cytochrome C-type biogenesis protein	best blastp match gb|AAK34347.1| (AE006588) putative cytochrome C-type biogenesis protein [Streptococcus pyogenes M1 GAS] putative cytochrome C-type biogenesis protein	Cytochrome c-type biogenesis protein	Similar to: HI1454, YE54_HAEIN conserved hypothetical cytochrome c-type biogenesis protein	Cytochrome c-type biogenesis protein ccdA.,Required for cytochrome c synthesis and stage V of sporulation.  Might transfer reducing equivalents across the cytoplasmic membrane promoting efficient disulfide bond isomerization of proteins localized on the outer surface of the membrane or in the spore coat (By similarity). cytochrome c-type biogenesis protein	identified by similarity to SP:P45706 cytochrome c-type biogenesis protein CcdA	putative cytochrome C biogenesis membrane protein	
HELPY00261	Probable dihydroorotase-like protein	Aspartate carbamoyltransferase, 44 kDa non- catalytic chain	Dihydroorotase	Dihydroorotase	Dihydroorotase	Dihydroorotase	Dihydroorotase:Dihydroorotase multifunctional complex type	Dihydroorotase	dihydroorotase	identified by similarity to SP:P48795; match to protein family HMM PF01979 dihydroorotase, putative	Dihydroorotase	Dihydroorotase	dihydroorotase	Probable dihydroorotase-like protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1177 putative dihydroorotase	dihydroorotase	Similar to sp|O66990|PYRC_AQUAE sp|Q8R9R6|PYRC_THETN sp|Q92AH1|PYRC_LISIN sp|Q8Y663|PYRC_LISMO; Ortholog to ERGA_CDS_06570 Dihydroorotase	Dihydroorotase family protein	Dihydroorotase, multifunctional complex type	dihydroorotase	Similar to sp|O66990|PYRC_AQUAE sp|Q8R9R6|PYRC_THETN sp|Q92AH1|PYRC_LISIN sp|Q8Y663|PYRC_LISMO; Ortholog to ERWE_CDS_06660 Dihydroorotase	identified by match to protein family HMM PF01979 dihydroorotase, multifunctional complex type	identified by similarity to SP:P25995; match to protein family HMM PF01979; match to protein family HMM TIGR00857 dihydroorotase, multifunctional complex type	identified by similarity to SP:Q59712; match to protein family HMM PF01979; match to protein family HMM TIGR00857 dihydroorotase, multifunctional complex type	Dihydroorotase multifunctional complex type	Amidohydrolase	Amidohydrolase	Similar to Bacillus subtilis dihydroorotase PyrC SW:PYRC_BACSU (P25995) (428 aa) fasta scores: E(): 2.8e-94, 60.849% id in 424 aa, and to Bacillus caldolyticus dihydroorotase PyrC SW:PYRC_BACCL (P46538) (427 aa) fasta scores: E(): 9.1e-98, 61.814% id in 419 aa putative dihydroorotase	dihydroorotase, multifunctional complex type	
HELPY00262	Chlorohydrolase	identified by similarity to SP:P76641; match to protein family HMM PF01979 amidohydrolase family protein	Amidohydrolase family protein	Putative uncharacterized protein	Putative	Putative N-ethylammeline chlorohydrolase	Cytosine deaminase or related metal-dependent hydrolase	Cytosine deaminase/metal-dependent hydrolase	Chlorohydrolase, Atz/Trz family	predicted metal-dependent hydrolase COG0402, pfam01979, cd01298	Amidohydrolase	amidohydrolase PFAM: amidohydrolase Amidohydrolase 3 KEGG: sma:SAV6652 putative N-ethylammeline chlorohydrolase	chlorohydrolase	Amidohydrolase family protein	chlorohydrolase identified by match to protein family HMM PF01979	chlorohydrolase Function unclear	amidohydrolase PFAM: amidohydrolase; Amidohydrolase 3 KEGG: gme:Gmet_1645 chlorohydrolase, Atz/Trz family	amidohydrolase family protein identified by match to protein family HMM PF01979	Amidohydrolase	Atz/Trz family protein equivalent gene in S.pneumoniae TIGR4 = SP1356; equivalent gene in S.pneumoniae R6 = spr1214; identified by match to protein family HMM PF01979; match to protein family HMM PF07969	amidohydrolase PFAM: amidohydrolase KEGG: dde:Dde_2963 amidohydrolase family protein	Amidohydrolase family protein	Predicted metal-dependent hydrolase, TRZ/ATZ family	Amidohydrolase family protein	5-methylthioadenosine/S-adenosylhomocysteine deaminase	Amidohydrolase family protein	Amidohydrolase	Chlorohydrolase	5-methylthioadenosine/S-adenosylhomocysteine deaminase	
HELPY00263	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00264	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	hypothetical protein	hypothetical conserved protein	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	TRNA-i(6)A37 modification enzyme MiaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	MIAB PROTEIN	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	CDS_ID OB1628 hypothetical protein	similar to AL022268-8|CAA18324.1| percent identity: 69 in 498 aa conserved hypothetical protein	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	hypothetical protein	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	SC4H2.08, unknown, len: 505 aa; highly similar to hypothetical proteins from many organisms e.g. YLEA_ECOLI P77645 hypothetical 53.7 kd protein in cute- (474 aa), fatsa scores; opt: 1101 z-score: 1288.4 E(): 0, 40.9% identity in445 aa overlap. Contains PS01278 Uncharacterized protein family UPF0004 signature conserved hypothetical protein SC4H2.08	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	hypothetical protein	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	
HELPY00265	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Uncharacterized conserved protein	Protein of unknown function DUF374	hypothetical protein	protein of unknown function DUF374	hypothetical cytosolic protein	conserved hypothetical protein Specificity unclear	conserved hypothetical protein identified by match to protein family HMM PF04028	protein of unknown function DUF374 PFAM: protein of unknown function DUF374 KEGG: aba:Acid345_4514 protein of unknown function DUF374	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative lipoprotein	Putative lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	protein of unknown function DUF374 PFAM: protein of unknown function DUF374; KEGG: dal:Dalk_1795 protein of unknown function DUF374	
HELPY00266	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	hypothetical protein identified by Glimmer2; putative	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00267	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00268	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00269	Uncharacterized protein HP_0274	Putative uncharacterized protein	identified by similarity to SP:P56132; match to protein family HMM PF03692 conserved hypothetical protein	Hypothetical protein JHP0259	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF03692	conserved hypothetical protein (Q9ZMG1) similar to Hypothetical protein JHP0259 Specificity unclear	conserved hypothetical protein identified by match to protein family HMM PF03692	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	protein of unknown function UPF0153 PFAM: protein of unknown function UPF0153; KEGG: sus:Acid_7487 hypothetical protein	Putative uncharacterized protein	
HELPY00270	ATP-dependent nuclease	Putative uncharacterized protein	Putative	Putative uncharacterized protein	ATP-dependent nuclease	conserved hypothetical protein	ATP-dependent nuclease Function unclear	lipoprotein, putative	Putative uncharacterized protein	Putative uncharacterized protein	Putative lipoprotein	Putative lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	Tetratricopeptide repeat domain protein	Tetratricopeptide repeat domain protein	ATP-dependent nuclease	ATP-dependent nuclease	Tetratricopeptide repeat domain protein	Putative uncharacterized protein	ATP-dependent nuclease	TPR domain protein, putative	Putative uncharacterized protein	
HELPY00271	Putative uncharacterized protein	Putative	indole-3-glycerol phosphate synthase	indole-3-glycerol phosphate synthase (Q9PI11) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS) High confidence in function and specificity	Putative uncharacterized protein	Indole-3-glycerol phosphate synthase	Indole-3-glycerol phosphate synthase	
HELPY00272	Ferredoxin	Ferredoxin	Ferredoxin	Putative uncharacterized protein yfhL	Ferredoxin	Ferredoxin	Ferredoxin	Ferredoxin	Residues 1 to 86 of 86 are 97 pct identical to residues 1 to 86 of a 86 aa protein from Escherichia coli K12 ref: NP_417057.1 orf, conserved hypothetical protein	Putative [4Fe-4S] ferredoxin	3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain	Probable ferredoxin protein	Similar to putative ferredoxin-like protein YfhL of Escherichia coli	Ferredoxin [4Fe-4S	Ferredoxin	identified by similarity to SP:P00208; match to protein family HMM PF00037 ferredoxin, 4Fe-4S	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ferredoxin	IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain putative ferredoxin	similar to Salmonella typhi CT18 putative ferredoxin putative ferredoxin	Ferredoxin	Ferredoxin	Ferredoxin	Putative [4Fe-4S] ferredoxin	Putative ferredoxin	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pc : putative carrier putative ferredoxin [4Fe-4S] (Fdx)	ferredoxin	Similar to: HI0527, YFHL_HAEIN putative ferredoxin-like protein	Ferredoxin 2 NapF protein	Ferredoxin, 4Fe-4S	
HELPY00273	Guanosine pentaphosphate phosphohydrolase	Exopolyphosphatase	exopolyphosphatase	Exopolyphosphatase	Exopolyphosphatase	GUANOSINE PENTAPHOSPHATE PHOSPHOHYDROLASE	Exopolyphosphatase	Exopolyphosphatase	Ppx/GppA phosphatase	Probable exopolyphosphatase protein	identified by match to protein family HMM PF02541 exopolyphosphatase	exopolyphosphatase	Exopolyphosphatase	Exopolyphosphatase	Exopolyphosphatase	Exopolyphosphatase	identified by match to protein family HMM PF02541 phosphatase, Ppx/GppA family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark exopolyphosphatase	Exopolyphosphatase	Exopolyphosphatase	GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE	Exopolyphosphatase	similarity to Methanosarcina acetivorans conserved protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme exopolyphosphatase (ExopolyPase) (Metaphosphatase)	Ppx/GppA phosphatase	COG0248 exopolyphosphatase	guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase	Exopolyphosphatase GppA protein	Exopolyphosphatase	
HELPY00274	Lipopolysaccharide heptosyltransferase-1	Putative lipopolysaccharide-heptosyl-transferase	Lipopolysaccharide heptosyltransferase-1	Similar to ADP-heptose:LPS heptosyltransferase II hypothetical protein	Lipopolysaccharide heptosyltransferase I	Lipopolysaccharide heptosyltransferase	LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1	ADP-heptoseLPS heptosyltransferase RfaF protein	ADP-heptose:LPS heptosyltransferase	ortholog to Escherichia coli bnum: b3621; MultiFun: Cell structure 6.3; Metabolism 1.6.3.2 ADP-heptose; LPS heptosyl transferase I	Lipopolysaccharide heptosyltransferase I	Lipopolysaccharide heptosyltransferase I	lipopolysaccharide heptosyltransferase I	lipopolysaccharide heptosyltransferase-1	Lipopolysaccharide heptosyltransferase I	Lipopolysaccharide heptosyltransferase I	lipopolysaccharide heptosyltransferase I TIGRFAMsMatches:TIGR02193	Lipopolysaccharide heptosyltransferase I	Lipopolysaccharide heptosyltransferase I	lipopolysaccharide heptosyltransferase-1	ADP-heptose:LPS heptosyltransferase	RfaF-like lipopolysaccharide core biosynthesis g lycosyl transferase	Lipopolysaccharide heptosyltransferase I	glycosyl transferase, family 9 PFAM: glycosyl transferase, family 9 KEGG: plt:Plut_0112 heptosyltransferase	glycosyl transferase, family 9 PFAM: glycosyl transferase, family 9 KEGG: rru:Rru_A2230 glycosyl transferase, family 9	Lipopolysaccharide heptosyltransferase-1	Lipopolysaccharide heptosyltransferase I	lipopolysaccharide heptosyltransferase I identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193	lipopolysaccharide heptosyltransferase I TIGRFAM: lipopolysaccharide heptosyltransferase I PFAM: glycosyl transferase, family 9 KEGG: pfl:PFL_0512 lipopolysaccharide heptosyltransferase I	
HELPY00275	Heat shock protein B	Lipid A biosynthesis lauroyl acyltransferase	identified by similarity to OMNI:NTL01HP00264; match to protein family HMM PF03279 lipid A biosynthesis lauroyl acyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipid A biosynthesis lauroyl acyltransferase	Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis	Lipid A biosynthesis lauroyl acyltransferase	Putative LIPID A BIOSYNTHESIS ACYLTRANSFERASE	Putative acetyltransferase	Similar to Q8ZNA3 (Q8ZNA3) Cold shock-induced palmitoleoyl transferase from Salmonella typhimurium (306 aa). FASTA: opt: 629 Z-score: 782.5 E(): 1.1e-35 Smith-Waterman score: 629; 36.755 identity in 302 aa overlap Paralog of FTT0231c Acyltransferase	lipid A biosynthesis lauroyl acyltransferase	identified by similarity to SP:P24187; match to protein family HMM PF03279; match to protein family HMM TIGR02207 lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis acyltransferase	Lipid A biosynthesis lauroyl acyltransferase	Best Blastp Hit: emb|CAB84858.1| (AL162756) putative acetyltransferase [Neisseria meningitidis] COG1560 Lauroyl/myristoyl acyltransferase involved putative acyltransferase	lipid A biosynthesis acyltransferase	Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	Lipid A biosynthesis acyltransferase	Lipid-A biosynthesis lauroyl acyltransferase	Lauroyl/myristoyl acyltransferase COG1560	Lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis acyltransferase	Lipid A biosynthesis (KDO)2-(Lauroyl)-lipid IVA acyltransferase	Lipid A biosynthesis lauroyl (Or palmitoleoyl) acyltransferase	putative lipid A biosynthesis acyltransferase	lipid A biosynthesis lauroyl acyltransferase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Lipid A biosynthesis lauroyl (Or palmitoleoyl) acyltransferase	lipid A biosynthesis acyltransferase	Acyltransferase Similar to Q8ZNA3 (Q8ZNA3) Cold shock-induced palmitoleoyl transferase from Salmonella typhimurium (306 aa). FASTA: opt: 629 Z-score: 782.5 E(): 1.1e-35 Smith-Waterman score: 629; 36.755 identity in 302 aa overlap Paralog of FTF0231c	lipid A biosynthesis lauroyl acyltransferase	
HELPY00276	Queuine tRNA-ribosyltransferase	tRNA-guanine transglycosylase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	CDS_ID OB2033 tRNA-guanine transglycosylase	similar to AP003134-179|BAB42731.1| percent identity: 43 in 391 aa putative queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	tRNA guanine transglycosylase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Residues 1 to 375 of 375 are 100 pct identical to residues 1 to 375 of a 375 aa protein TGT_SHIFL sp: Q54177 queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) (Virulence-associated protein VACC)	
HELPY00277	Putative uncharacterized protein	Putative uncharacterized protein	Putative	TrkA-C	hypothetical protein	TrkA domain protein identified by match to protein family HMM PF02080	conserved hypothetical protein (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.24.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like Function unclear	trkA domain protein identified by match to protein family HMM PF02080	Putative uncharacterized protein	Putative uncharacterized protein	TrkA domain protein	Putative uncharacterized protein	Putative uncharacterized protein	TrkA domain protein	TrkA domain protein	TrkA domain protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative TrkA-C	TrkA domain protein	TrkA-N domain family protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00278	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	CDS_ID OB1784 3-dehydroquinate synthase	similar to AX066049-1|CAC26264.1| percent identity: 81 in 359 aa 3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	SC9C5.18c, aroB, 3-dehydroquinate synthase, len: 363 aa; similar to SW:AROB_ECOLI (EMBL:X03867) Escherichia coli 3-dehydroquinate synthase (EC 4.6.1.3) AroB, 362 aa; fasta scores: opt: 699 z-score: 796.4 E(): 0; 37.5% identity in 352 aa overlap. Contains Pfam match to entry PF01761 DHQ_synthase, 3-dehydroquinate synthase 3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	Residues 1 to 362 of 362 are 99 pct identical to residues 1 to 362 of a 362 aa protein from Escherichia coli O157:H7 ref: NP_312258.1 3-dehydroquinate synthase	3-dehydroquinate synthase	
HELPY00279	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative	MscS Mechanosensitive ion channel	MscS Mechanosensitive ion channel	conserved hypothetical integral membrane protein	mechanosensitive ion channel family protein identified by match to protein family HMM PF00924	conserved hypothetical protein (Q58111) similar to Hypothetical UPF0003 protein MJ0700 Specificity unclear	mechanosensitive ion channel family protein identified by match to protein family HMM PF00924	Mechanosensitive ion channel	Mechanosensitive ion channel	Mechanosensitive ion channel family protein	MscS Mechanosensitive ion channel	Putative uncharacterized protein	Conserved hypothetical integral membrane protein	Mechanosensitive ion channel family protein	Mechanosensitive ion channel family protein	Mechanosensitive ion channel family protein	Putative uncharacterized protein	Putative uncharacterized protein	MscS Mechanosensitive ion channel	Mechanosensitive ion channel family protein	Mechanosensitive ion channel protein	Putative uncharacterized protein	MscS Mechanosensitive ion channel	
HELPY00280	Putative methylthiotransferase HP_0285	Putative uncharacterized protein MYPE1630	Fe-S OXIDOREDUCTASE	CDS_ID OB1964 hypothetical protein	Putative 2-methylthioadenine synthetase	hypothetical protein	MiaB-like tRNA modifying enzyme	MiaB-like tRNA modifying enzyme	Fe-S oxidoreductases	BH1351 protein	2-methylthioadenine synthetase	Putative methylthiotransferase RP416	hypothetical protein	Putative uncharacterized protein	Putative 2-methylthioadenine synthetase	identified by similarity to OMNI:SA1633; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 conserved hypothetical protein	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 MiaB-like tRNA modifying enzyme	Hypothetical protein	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 MiaB-like tRNA modifying enzyme	Putative uncharacterized protein	conserved hypothetical protein	2-methylthioadenine synthetase	Putative uncharacterized protein TTHA1618	2-methylthioadenine synthetase	Similar to several including: Chlamydia pneumoniae hypothetical protein Cpn0477/cp0277/cpj0477 cpn0477 or cp0277 or cpj0477 SWALL:Y477_CHLPN (SWALL:Q9Z874) (421 aa) fasta scores: E(): 4.1e-119, 71.97% id in 421 aa, and to Thermoanaerobacter tengcongensis 2-methylthioadenine synthetase MiaB or tte0962 SWALL:Q8RB61 (EMBL:AE013061) (437 aa) fasta scores: E(): 5.5e-40, 34.82% id in 425 aa, and to Thermotoga maritima hypothetical protein Tm0830 SWALL:Y830_THEMA (SWALL:Q9WZT7) (434 aa) fasta scores: E(): 6.3e-40, 36.83% id in 429 aa conserved hypothetical protein	Putative uncharacterized protein	similar to BR1933, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein	
HELPY00281	Cell division protein	ATP-DEPENDENT ZINC METALLOPEPTIDASE	cell division protein	Vesicle-fusing ATPase	cell division protein FtsH3 (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.24.-) (FtsHCP) High confidence in function and specificity	cell division protein FtsH, putative identified by match to protein family HMM PF00004; match to protein family HMM PF06480	ATP-dependent zinc metalloproteinase	Putative cell division protein FtsH	ATP-dependent metalloprotease FtsH	Putative membrane bound ATPase	Cell division protein	Cell division protein	Cell division protein FtsH	Cell division protein FtsH	Vesicle-fusing ATPase	
HELPY00282	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00283	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	putative integral membrane protein	conserved hypothetical protein hypothetical protein	membrane protein, putative	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Probable integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00284	Toxin-like outer membrane protein	Putative vacuolating cytotoxin (VacA) paralog	putative vacuolating cytotoxin (VacA)-like protein	putative vacuolating cytotoxin (VacA) paralog (Q48253) Vacuolating cytotoxin precursor Specificity unclear	Hypothetical protein	Uncharacterized giant conserved protein	Putative repetitive surface protein	Autotransporter-associated beta strand repeat protein precursor	Haemagluttinin domain protein	YadA domain protein	Putative uncharacterized protein	Toxin-like outer membrane protein	putative haemagglutinin-related autotransporter protein This CDS is highly repetitive and contains a C-terminal YadA domain, althought the hit is before the PFam gathering threshold.	Putative vacuolating cytotoxin(VacA)-like protein	Vacuolating cytotoxin VacA-like protein	Putative toxin-like outer membrane protein/vacuolating cytotoxin (VacA) paralog; putative signal peptide	Adhesin HecA family protein	
HELPY00285	Diaminopimelate decarboxylase	diaminopimelate decarboxylase	diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	DIAMINOPIMELATE DECARBOXYLASE	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	similar to AF126720-2|AAD32591.1| percent identity: 57 in 451 aa putative diaminopimelate decarboxylase	diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	SCBAC5H2.22, lysA, diaminopimelate decarboxylase, len: 463 aa; highly similar to SW:DCDA_CORGL (EMBL:X07563) Corynebacterium glutamicum diaminopimelate decarboxylase (EC 4.1.1.20) LysA, 445 aa; fasta scores: opt: 1503 z-score: 1722.5 E(): 0; 51.0% identity in 443 aa overlap.  Contains Pfam match to entry PF00278 Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase and matches to Prosite entries PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site and PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2 diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 diaminopimelate decarboxylase	diaminopimelate decarboxylase	Diaminopimelate decarboxylase	Diaminopimelate decarboxylase	identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 diaminopimelate decarboxylase	Diaminopimelate decarboxylase	
HELPY00286	Putative uncharacterized protein	Chorismate mutase	chorismate mutase	conserved hypothetical protein (P43902) T-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM); Prephenate dehydrogenase (EC 1.3.1.12) (PDH)] High confidence in function and specificity	Chorismate mutase	Chorismate mutase	Putative uncharacterized protein	Chorismate mutase	Chorismate mutase	
HELPY00287	Putative uncharacterized protein	Putative uncharacterized protein MYPE8860	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3689 SWALL:AAO78794 (EMBL:AE016941) (305 aa) fasta scores: E(): 4.8e-106, 81.63% id in 305 aa, and to Clostridium tetani conserved protein CTC00813 SWALL:AAO35411 (EMBL:AE015938) (303 aa) fasta scores: E(): 2.8e-33, 35.43% id in 302 aa, and to Helicobacter pylori J99 putative jhp0277 SWALL:Q9ZME3 (EMBL:AE001465) (290 aa) fasta scores: E(): 3.8e-30, 34.7% id in 291 aa conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	hypothetical protein	conserved hypothetical protein identified by similarity to GB:AAO35411.1	hypothetical protein	conserved hypothetical protein identified by similarity to GB:AAO35411.1	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein (P33275) Hypothetical protein MYCGA3080 Specificity unclear	conserved hypothetical protein	Putative transcriptional regulator, CopG family	Hypothetical protein	Putative uncharacterized protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00288	Para-aminobenzoate synthetase	Chorismate binding enzyme	CDS_ID OB0702 para-aminobenzoate synthase component II	Lin2893 protein	Para-aminobenzoate synthase component I	Putative para-aminobenzoate synthetase componentIprotein	4-amino-4-deoxychorismate lyase Para-aminobenzoate synthetase component I	para-aminobenzoate synthetase component I	identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553 para-aminobenzoate synthase glutamine amidotransferase, component I	Para-aminobenzoate synthase, component I	Para-aminobenzoate synthase component I	Para-aminobenzoate synthase glutamine amidotransferase component I	Putative uncharacterized protein gbs1584	P-AMINOBENZOATE SYNTHETASE	identified by match to PFAM protein family HMM PF00425 chorismate binding enzyme	Putative para-aminobenzoate synthase component I	Para-aminobenzoate synthetase component I/4-amino -4-deoxychorismate lyase	best blastp match gb|AAK34675.1| (AE006622) putative para-aminobenzoate synthetase [Streptococcus pyogenes M1 GAS] putative para-aminobenzoate synthetase	identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553 para-aminobenzoate synthase, component I	Para-aminobenzoate synthetase	Similar to Q8ESD8 Para-aminobenzoate synthase component II (585 aa) fasta scores; opt: 1108 Z-score: 1235.5 E(): 5.7e-61 Smith-Waterman score: 1108; 33.851 identity in 579 aa overlap. ORF ftt0945 chorismate binding family protein	para-aminobenzoate synthetase component I	putative PARA-aminobenzoate synthetase component I protein	Para-aminobenzoate synthase, component I	Para-aminobenzoate synthase, component I	Best Blastp Hit: emb|CAB83772.1| (AL162753) putative para-aminobenzoate synthase component I [Neisseria meningitidis] COG0147 Anthranilate/para-aminobenzoate synthases putative para-aminobenzoate synthase component	identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553 para-aminobenzoate synthase, component I	4-amino-4-deoxychorismate lyase para-aminobenzoate synthetase component I	Para-aminobenzoate synthase, component I	
HELPY00289	Aliphatic amidase	Aliphatic amidase	amidase (EC 3.5.1.4) (aliphatic amidase) 1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Aliphatic amidase	aliphatic amidase	Amidase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Amidase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase KEGG: abo:ABO_1980 aliphatic amidase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase KEGG: bcn:Bcen_3739 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	aliphatic amidase (Q9ZME1) Aliphatic amidase (EC 3.5.1.4) (Acylamide amidohydrolase) High confidence in function and specificity	Amidase	aliphatic amidase	Aliphatic amidase	Aliphatic amidase	Amidase	Aliphatic amidase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Aliphatic amidase	Aliphatic amidase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	
HELPY00290	Flagellin B homolog	Flagellar hook-associated protein FlgL	Putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3	Putative flagellin	putative flagellar-hook associated protein 3	flagellar hook-associated protein identified by match to protein family HMM PF00669	flagellar hook-associated protein FlgL (P96501) Flagellar hook-associated protein 3 (HAP3) High confidence in function and specificity	flagellin family protein identified by match to protein family HMM PF00669	Flagellin family protein	Putative flagellin	Bacterial flagellin N-terminus domain protein	Flagellar hook-associated protein	Flagellar hook-associated protein FlgL	Putative flagellar-hook associated protein 3	Flagellin family protein	Flagellin family protein	Flagellar-hook associated protein 3	Flagellar hook-associated protein 3	
HELPY00291	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	CDS_ID OB2046 50S ribosomal protein L21	50S ribosomal protein L21	similar to AE001872-2|AAF09679.1| percent identity: 43 in 101 aa putative 50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	
HELPY00292	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27 (BL30)	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	CDS_ID OB2044 50S ribosomal protein L27	50S ribosomal protein L27	similar to AE001246-4|AAC65717.1| percent identity: 64 in 83 aa putative 50S ribosomal protein L27	50S ribosomal protein L27	ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	
HELPY00293	Dipeptide ABC transporter, periplasmic dipeptide- binding protein	ABC oligopeptide transporter, periplasmic ligand binding protein	periplasmic dipeptide-binding protein	extracellular solute-binding protein, family 5 PFAM: extracellular solute-binding protein, family 5 KEGG: bur:Bcep18194_A6392 ABC oligopeptide transporter, periplasmic ligand binding protein	probable solute binding protein of ABC transporter system COG family: ABC-type dipeptide_oligopeptide_nickeltransport systems_ periplasmic components Orthologue of BL0394 PFAM_ID:SBP_bac_5	dipeptide transport system substrate-binding protein High confidence in function and specificity	ABC dipeptide transporter extracellular solute-binding protein, family 5 PFAM: extracellular solute-binding protein, family 5 KEGG: pat:Patl_3006 extracellular solute-binding protein, family 5	Extracellular solute-binding protein family 5 precursor	Periplasmic dipeptide-binding protein	Periplasmic dipeptide-binding protein	ABC-type peptide/nickel transport system substrate-binding protein	Periplasmic dipeptide-binding protein	Dipeptide ABC transporter, extracellular solute- binding protein family 5	ABC-type transport system, periplasmic binding protein; putative dipeptide transporter protein 1; putative signal peptide	
HELPY00294	Dipeptide ABC transporter, permease protein	Oligopeptide ABC transporter permease protein	Dipeptide transport system permease protein dppB	CDS_ID OB2450 dipeptide ABC transporter permease	Residues 1 to 339 of 339 are 99 pct identical to residues 1 to 339 of a 339 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290124.1 dipeptide transport system permease protein 1	Dipeptide transport system permease protein	Dipeptide transport system permease protein DppB	Dipeptide transport system permease protein	Oligopeptide ABC transporter, permease component	Dipeptide ABC transporter	InterProMatches:IPR000515; oligopeptide transport,Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020) oligopeptide ABC transporter (permease)	IPR000515: Binding-protein-dependent transport systems inner membrane component ABC superfamily (membrane), dipeptide transport protein 1	similar to Salmonella typhi CT18 dipeptide transport system permease protein DppB dipeptide transport system permease protein DppB	similar to BR1585, dipeptide ABC transporter, permease protein dipeptide ABC transporter, permease protein	DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN	ABC dipeptide transporter, permease subunit	Similar to: HI1187, DPPB_HAEIN dipeptide transport system permease protein	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components DppB protein	Dipeptide ABC transporter, permease protein	Dipeptide transport protein 1	dipeptide transport system permease protein	identified by match to protein family HMM PF00528 dipeptide ABC transporter, permease protein	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0601; TC:3.A.1.5.2 oligopeptide ABC transporter permease protein	identified by match to protein family HMM PF00528 dipeptide ABC transporter, permease protein	Binding-protein-dependent transport systems inner membrane component	Code: EP; COG: COG0601 dipeptide transport system permease protein 1	Binding-protein-dependent transport systems inner membrane component	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] ABC peptide transporter, inner membrane subunit	Code: EP; COG: COG0601 dipeptide transport system permease protein 1	
HELPY00295	Dipeptide ABC transporter, permease protein	CDS_ID OB2449 dipeptide ABC transporter permease	ABC transporter permease protein	Dipeptide ABC transporter	Dipeptide transport system permease protein	Dipeptide transport system permease protein DppC	Dipeptide transport system permease protein	Dipeptide ABC transporter	InterProMatches:IPR000515; oligopeptide transport,Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020) oligopeptide ABC transporter (permease)	oligopeptide ABC transporter permease	ABC transporter permease protein	IPR000515: Binding-protein-dependent transport systems inner membrane component ABC superfamily (membrane), dipeptide transport protein 2	similar to Salmonella typhi CT18 dipeptide transport system permease protein DppC dipeptide transport system permease protein DppC	similar to BR1584, dipeptide ABC transporter, permease protein dipeptide ABC transporter, permease protein	ABC dipeptide transporter, permease subunit	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components DppC protein	Dipeptide transport protein 2	dipeptide transport system permease protein	identified by match to protein family HMM PF00528 dipeptide ABC transporter, permease protein	Binding-protein-dependent transport systems inner membrane component:Sodium:dicarboxylate symporter	ABC peptide transporter, inner membrane subunit	binding-protein-dependent transport systems inner membrane component	dipeptide ABC transporter permease component	Oligopeptide/dipeptide ABC transporter, inner membrane subunit	putative didpeptide permease component of ABC transporter similarity:fasta; with=UniProt:Q9AE43 (EMBL:RLE310184); Rhizobium leguminosarum (biovar viciae).; dppC;; DppC protein. DppC protein.; length=296; id 97.635; 296 aa overlap; query 1-296; subject 1-296	Binding-protein-dependent transport systems inner membrane component	Binding-protein-dependent transport systems inner membrane component	dipeptide transport system permease protein identified by match to protein family HMM PF00528	dipeptide ABC transporter, permease protein similar to dppC1 (SMc00788) [Sinorhizobium meliloti] and DppC [Rhizobium leguminosarum bv. viciae] Similar to swissprot:Q92RV8 Putative location:bacterial inner membrane Psort-Score: 0.7793; go_component: membrane [goid 0016020]; go_function: transporter activity [goid 0005215]; go_process: transport [goid 0006810]	
HELPY00296	Dipeptide ABC transporter, ATP-binding protein	CDS_ID OB3069 oligopeptide ABC transporter ATP-binding protein	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component	ABC transporter ATP-binding protein	Peptide ABC transporter, ATP-binding protein	DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN	oligopeptide transport ATP-binding protein OppD	oligopeptide ABC transporter, ATP-binding protein	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like	putative oligopeptide ABC transporter,ATP-binding protein	putative ATP-binding component of ABC transporter similarity:fasta; SWALL:Q9X0F4 (EMBL:AE001766); Thermotoga maritima; oligopeptide ABC transporter,ATP-binding protein; length 332 aa; 330 aa overlap; query 20-349 aa; subject 4-328 aa	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein KEGG: dra:DR1568 peptide transport system ATP-binding protein, ev=1e-175, 88% identity TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like: (9.9e-33) PFAM: ABC transporter related: (7.5e-64) Oligopeptide/dipeptide ABC transporter-like: (9.1e-32) SMART: ATPase: (1.5e-17)	dipeptide ABC transporter	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein	oligopeptide transport ATP-binding protein	oligopeptide/dipeptide ABC transporter, ATPase subunit KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein SMART: AAA ATPase	dipeptide transport system ATP-binding protein (P42064) Oligopeptide transport ATP-binding protein appD High confidence in function and specificity	ABC peptide transporter, ATPase subunit	oligopeptide transport ATP-binding protein OppD identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727	ABC-type oligopeptide transport system,, ATPase component	ABC-type transporter, ATPase component: PepT family	Oligopeptide/dipeptide ABC transporter, ATPase subunit	Oligopeptide/dipeptide ABC transporter, ATPase subunit	Oligopeptide/dipeptide ABC transporter, ATPase subunit	Oligopeptide/dipeptide ABC transporter, ATPase subunit	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain GO_component: internal side of plasma membrane [GO ID 0009898]; GO_function: peptide-transporting ATPase activity [GO ID 0015440]; GO_process: peptide transport [GO ID 0015833]	AppD	Oligopeptide/dipeptide ABC transporter, ATPase subunit	Oligopeptide/dipeptide ABC transporter, ATPase subunit	
HELPY00297	Dipeptide ABC transporter, ATP-binding protein	dipeptide ABC transporter	ABC transporter related	dipeptide transport system ATP-binding protein (P37313) Dipeptide transport ATP-binding protein dppF High confidence in function and specificity	Dipeptide transport protein	Dipeptide transport system atp-binding protein	Dipeptide ABC transporter	Dipeptide ABC transporter	
HELPY00298	GTPase obg	glr4375	GTPase obg	GTP-binding protein, GTP1/OBG family	GTPase obg	GTP-BINDING PROTEIN	GTPase obg	GTPase obg	GTPase obg	CDS_ID OB2042 Spo0B-associated GTP-binding protein	GTPase obg	GTPase obg	GTP-binding protein	GTPase obg	GTPase obg	GTPase obg	GTPase obg	GTPase obg	GTPase obg	Obg family GTPase CgtA	GTPase obg	GTPase obg	GTPase obg	GTPase obg	GTP-binding protein	GTPase obg	Residues 1 to 390 of 390 are 99 pct identical to residues 1 to 390 of a 390 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289757.1 putative GTP-binding factor	GTPase obg	Putative GTP-binding protein	
HELPY00299	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Similar to H. pylori predicted coding region HP0304 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00300	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative periplasmic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00301	Glutamate-1-semialdehyde 2,1-aminomutase	glutamate-1-semialdehyde 2,1-aminotransferase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	CDS_ID OB2065 glutamate-1-semialdehyde 2,1-aminomutase	similar to AL583925-88|CAC31930.1| percent identity: 61 in 438 aa putative glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase 2	SCD65.12, hemL, glutamate-1-semialdehyde 2,1-aminomutase, len: 438 aa; highly similar to SW:GSA_ECOLI (EMBL:X53696) Escherichia coli glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) HemL, 426 aa; fasta scores: opt: 1425 z-score: 1497.5 E(): 0; 52.0% identity in 425 aa overlap. Contains Pfam match to entry PF00202 aminotran_3, Aminotransferases class-III pyridoxal-phosphate and match to Prosite entry PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase 1	Glutamate-1-semialdehyde 2,1-aminomutase	Residues 1 to 426 of 426 are 99 pct identical to residues 1 to 426 of a 426 aa protein from Escherichia coli K12 ref: NP_414696.1 glutamate-1-semialdehyde aminotransferase (aminomutase)	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase 1	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	identified by similarity to SP:O34092; match to protein family HMM PF00202; match to protein family HMM TIGR00713 glutamate-1-semialdehyde-2,1-aminomutase	glutamate-1-semialdehyde aminomutase	
HELPY00302	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative integral membrane protein	Putative uncharacterized protein	Arginine biosynthesis bifunctional protein ArgJ	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00303	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00304	Putative uncharacterized protein	Hydrolase, carbon-nitrogen family	BETA-UREIDOPROPIONASE	Putative carbon-nitrogen hydrolase	similar to nitrilase, nitrilase 1 like protein	Possible nitrilase	SCGD3.08c, possible hydrolase, len: 264 aa; weakly similar to hydrolases e.g. to TR:Q44185 (EMBL:X91070) Agrobacterium radiobacter D-N-alpha-carbamilase (304 aa) (28.17% identity in 252 aa overlap). Similar to many hypothetical proteins e.g. TR:O27839 (EMBL:AE000934) Methanobacterium thermoautotrophicum putative N-carbamoyl-D-amino acid amidohydrolase (272 aa) (36.2% identity in 265 aa overlap). Similar to others from S.coelicolor e.g. TR:O69808 (EMBL:AL023496) S.coelicolor possible hydrolase (280 aa) (31.7% identity in 281 aa overlap). An alternative start codon is present at codon 10. Contains PS01227 Uncharacterized protein family UPF0012 signature which is also present in many of the hypothetical proteins similar to this one putative hydrolase	Predicted amidohydrolase	Lin0785 protein	Carbon-nitrogen hydrolase	Putative uncharacterized protein	Similar to hydrolase hypothetical protein	conserved gene nitrilase	Similar to hydrolase hypothetical protein	identified by match to protein family HMM PF00795 hydrolase, carbon-nitrogen family	nitrilase homolog	identified by match to protein family HMM PF00795 hydrolase, carbon-nitrogen family	Probable nitrilase	Hypothetical protein SE1633	Amidohydrolase protein	Carbon-nitrogen hydrolase family protein	similar to BR1875, carbon-nitrogen hydrolase family protein carbon-nitrogen hydrolase family protein	Putative	identified by similarity to OMNI:NTL01LI0780; match to protein family HMM PF00795 hydrolase, carbon-nitrogen family	Hydrolase, carbon-nitrogen family	COG0388 putative hydrolase	Predicted amidohydrolase, nitrilase family	putative amidohydrolase	
HELPY00305	Putative uncharacterized protein	Putative polysaccharide deacetylase	Polysaccharide deacetylase family protein	IPR002509: Polysaccharide deacetylase putative xylanase/chitin deacetylase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative	Putative polysaccharide deacetylase	Putative xylanase	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522 polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522 polysaccharide deacetylase family protein	Polysaccharide deacetylase	Pfam: polysaccharide deacetylase putative polysaccharide deacetylase	Polysaccharide deacetylase	putative imidase similarity:fasta; SWALL:Q93T25 (EMBL:AF373287); Alcaligenes eutrophus; imidase; length 291 aa; id=76.97; ungapped id=76.97; E()=3.3e-96; 291 aa overlap; query 1-291 aa; subject 1-291 aa similarity:fasta; SWALL:Q87XH5 (EMBL:AE016871); Pseudomonas syringae; polysaccharide deacetylase family protein; length 293 aa; id=79.86; ungapped id=79.86; E()=3.4e-101; 293 aa overlap; query 1-293 aa; subject 1-293 aa	Twin-arginine translocation pathway signal precursor	polysaccharide deacetylase PFAM: polysaccharide deacetylase KEGG: psp:PSPPH_3934 polysaccharide deacetylase family protein	hypothetical protein	Putative polysaccharide deacetylase	Polysaccharide deacetylase	polysaccharide deacetylase	Polysaccharide deacetylase	Polysaccharide deacetylase	polysaccharide deacetylase TIGRFAM: Twin-arginine translocation pathway signal PFAM: polysaccharide deacetylase KEGG: bcn:Bcen_0986 twin-arginine translocation pathway signal	putative polysaccharide deacetylase High confidence in function and specificity	putative polysaccharide deacetylase Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	polysaccharide deacetylase PFAM: polysaccharide deacetylase KEGG: rsp:RSP_1415 putative polysaccharide deacetylase	polysaccharide deacetylase	Polysaccharide deacetylase	
HELPY00306	Putative uncharacterized protein	Putative	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein similarity:fasta; SWALL:Q87XH9 (EMBL:AE016871); Pseudomonas syringae; hypothetical protein; length 99 aa; id=44.76; ungapped id=48.95; E()=2.7e-08; 105 aa overlap; query 1-105 aa; subject 1-96 aa This CDS overlaps 5 nt at the C-terminus with pRL120138	conserved hypothetical protein KEGG: hpy:HP0311 hypothetical protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00307	Conserved hypothetical ATP-binding protein	hypothetical protein	hypothetical protein	Similar to cobalamin synthesis related protein	Cobalamin synthesis protein	similar to BR2035, cobalamin synthesis protein/P47K family protein cobalamin synthesis protein/P47K family protein	Putative	hypothetical protein, similar to cobalamin synthesis related protein	identified by match to protein family HMM PF02492; match to protein family HMM PF07683 cobalamin synthesis protein/P47K family protein	identified by match to protein family HMM PF02492; match to protein family HMM PF07683 cobalamin synthesis protein/P47K family protein	Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K	Similar to Bacillus halodurans hypothetical protein BH0366 TR:Q9KFV5 (EMBL:AP001508) (311 aa) fasta scores: E(): 4.7e-27, 31.190% id in 311 aa, and to Aquifex aeolicus cobalamin synthesis related protein CobW TR:O66539 (EMBL:AE000675) (292 aa) fasta scores: E(): 1.6e-16, 29.682% id in 283 aa putative cobalamin synthesis protein	identified by match to protein family HMM PF02492; match to protein family HMM PF07683 cobalamin synthesis protein/P47K family protein	ATP/GTP-binding site motif A (P-loop):Cobalamin synthesis protein/P47K	conserved hypothetical protein	cobW protein	cobalamin synthesis protein/P47K family protein identified by match to protein family HMM PF02492; match to protein family HMM PF07683	Putative cobalamin synthesis protein	putative cobW family cobalimin synthesis protein similarity:fasta; SWALL:Q87XI0 (EMBL:AE016871); Pseudomonas syringae; cobalamin synthesis protein/p47k family protein; length 335 aa; id=43.34; ungapped id=44.44; E()=2.2e-48; 323 aa overlap; query 11-329 aa; subject 5-323 aa This CDS overlaps 5 nt at the N-terminus with pRL120139	cobalamin synthesis protein, P47K PFAM: cobalamin synthesis protein, P47K: (7.5e-65) cobalamin synthesis CobW-like: (1.8e-29) KEGG: dra:DR2408 CobW protein, putative, ev=1e-140, 80% identity	Cobalamin synthesis protein/P47K	cobalamin synthesis protein, P47K PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like KEGG: mag:amb2306 putative GTPase	Cobalamin synthesis protein/P47K family protein	conserved ATP/GTP binding protein	CobW/P47K family protein identified by match to protein family HMM PF02492; match to protein family HMM PF07683	CobW/P47K family protein identified by match to protein family HMM PF02492; match to protein family HMM PF07683	conserved hypothetical protein	Putative GTPase	cobalamin synthesis protein, P47K PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein KEGG: atc:AGR_L_3251 hypothetical protein	
HELPY00308	Nitrite extrusion protein	PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN	Mb3018, -, len: 445 aa. Equivalent to Rv2994, len: 445 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 445 aa overlap). Probable conserved integral membrane protein, member of major facilitator superfamily (MFS) possibly involved in transport of drug.  C-terminal part highly similar to O33118|MLCB637.27c HYPOTHETICAL 14.7 KDA PROTEIN (probable pseudogene product) from Mycobacterium leprae (134 aa), FASTA scores: opt: 483, E(): 2.7e-21, (60.9% identity in 138 aa overlap). Also similar to various transporters e.g.  Q9I5C8|PA0811 PROBABLE MFS TRANSPORTER from Pseudomonas aeruginosa (415 aa), FASTA scores: opt: 289, E(): 1.3e-09, (26.05% identity in 399 aa overlap); O30210|AF0025 CYANATE TRANSPORT PROTEIN from Archaeoglobus fulgidus (393 aa), FASTA scores: opt: 281, E(): 3.7e-09, (24.05% identity in 399 aa overlap); Q9RI35|SCJ12.25C PUTATIVE NITRATE/NITRITE TRANSPORTER from Streptomyces coelicolor (412 aa), FASTA scores: opt: 264, E(): 3.8e-08, (24.95% identity in 409 aa overlap); Q9A5N5|CC2412 MAJOR FACILITATOR FAMILY TRANSPORTER from Caulobacter crescentus (405 aa), FASTA scores: opt: 263, E(): 4.3e-08, (27.55% identity in 399 aa overlap); etc. First start taken; similarity to P21191|NORA_STAAU QUINOLONE RESISTANCE PROTEIN from Staphylococcus aureus (388 aa) suggests alternative start at 7319 but then no positively charged aa before first transmembrane segment. PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN	Putative	possible MFS family transporter	Benzoate MFS transporter BenK	identified by match to protein family HMM PF06779; match to protein family HMM PF07690 major facilitator family transporter	Protein of unknown function DUF1228:Major facilitator superfamily MFS_1	conserved hypothetical protein	Transporter, MFS superfamily COG2807 [P] Cyanate permease	transcript_id=ENSGACT00000013516	nitrite extrusion protein	Possible MFS family transporter, putative	hypothetical protein similarity to COG0477 Permeases of the major facilitator superfamily	Major facilitator superfamily MFS_1	major facilitator superfamily MFS_1	Permease of the major facilitator superfamily	Possible MFS family transporter	Major facilitator family (MFS) transporter	major facilitator superfamily MFS_1 PFAM: General substrate transporter; protein of unknown function DUF1228; major facilitator superfamily MFS_1 KEGG: mmc:Mmcs_1729 major facilitator superfamily MFS_1	hypothetical protein similar to conserved integral membrane protein Mapped to H37Rv Rv2994	Probable conserved integral membrane protein	Benzoate MFS transporter BenK	major facilitator superfamily MFS_1 PFAM: General substrate transporter; protein of unknown function DUF1228; major facilitator superfamily MFS_1 KEGG: mmc:Mmcs_1729 major facilitator superfamily MFS_1	benzoate transport protein (MFS superfamily) Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter	multidrug resistance efflux transporter, authentic frameshift identified by match to protein family HMM PF07690	Hypothetical protein	Major facilitator family transporter	Permease of the major facilitator superfamily	

HELPY00310	Virulence-associated protein D	virulence-associated protein D	Virulence-associated protein D (VapD) conserved region	Virulence-associated protein VapD1	Virulence-associated protein D	Putative uncharacterized protein	Virulence-associated protein D	virulence-associated protein D (VapD) conserved region PFAM: virulence-associated protein D (VapD) conserved region; KEGG: cch:Cag_1570 virulence-associated protein D	Putative uncharacterized protein	virulence-associated protein D (VapD) conserved region PFAM: virulence-associated protein D (VapD) conserved region; KEGG: hpy:HP0315 virulence associated protein D (VapD)	
HELPY00311	Putative uncharacterized protein	

HELPY00312	Outer membrane protein	outer membrane protein 5 putative outer membrane protein, similar to Hop family High confidence in function and specificity	
HELPY00313	Putative uncharacterized protein	identified by similarity to OMNI:NTL01CJ01539; match to protein family HMM PF03774 conserved hypothetical protein	Putative uncharacterized protein	Putative	Similar to: HI0854, Y854_HAEIN putative heme iron utilization protein	Pyridoxamine 5'-phosphate oxidase-related, FMN-binding	hypothetical protein	pyridoxamine 5'-phosphate oxidase family protein identified by match to protein family HMM PF01243	conserved hypothetical protein Specificity unclear	pyridoxamine 5'-phosphate oxidase-related, FMN-binding PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding KEGG: son:SO3667 hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF01243	pyridoxamine 5'-phosphate oxidase-related, FMN-binding PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding KEGG: son:SO3667 hypothetical protein	Putative heme iron utilization protein	Putative heme iron utilization protein	Pyridoxamine 5'-phosphate oxidase-related, FMN- binding	Pyridoxamine 5'-phosphate oxidase-related FMN- binding	Pyridoxamine 5'-phosphate oxidase-related, FMN- binding	Putative uncharacterized protein	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding KEGG: shw:Sputw3181_3199 pyridoxamine 5'-phosphate oxidase-related, FMN-binding pyridoxamine 5'-phosphate oxidase-related FMN-binding	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding KEGG: shw:Sputw3181_3199 pyridoxamine 5'-phosphate oxidase-related, FMN-binding pyridoxamine 5'-phosphate oxidase-related FMN-binding	Putative uncharacterized protein	Pyridoxamine 5'-phosphate oxidase family protein	Pyridoxamine 5'-phosphate oxidase-related FMN- binding	Putative uncharacterized protein	Heme uptake and utilization protein HuvZ	Putative uncharacterized protein	Pyridoxamine 5'-phosphate oxidase-related FMN- binding	Pyridoxamine 5'-phosphate oxidase-like protein	Heme iron utilization protein	
HELPY00314	Arginyl-tRNA synthetase	arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	CDS_ID OB3015 arginine-tRNA ligase	ARGINYL-TRNA SYNTHETASE	similar to Z21501-1|CAA79710.1| percent identity: 90 in 550 aa putative arginyl-tRNA synthetase	arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase 1	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	arginyl-tRNA synthetase	Arginyl-tRNA synthetase	
HELPY00315	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	identified by similarity to SP:P25895; match to protein family HMM PF02416; match to protein family HMM TIGR01411 twin-arginine translocation protein, TatA/E family	Sec-independent protein translocase protein tatA/E homolog	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark sec-independent protein translocase	component of Sec-independent protein secretion pathway	similar to Salmonella typhi CT18 sec-independent protein translocase protein sec-independent protein translocase protein	similar to BR0882, Sec-independent protein translocase protein TatA, hypothetical Sec-independent protein translocase protein TatA, hypothetical	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein translocase protein tatA/E homolog	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter Sec-independent protein translocase protein	Sec-independent protein translocase protein TatA	Sec-independent protein translocase protein tatA	Sec-independent protein translocase subunit A	sec-independent protein translocase	sec-independent protein secretion pathway component TatA	Twin-arginine translocation protein TatA/E	Twin-arginine translocation protein TatA/E	twin-arginine translocation protein TatA/E	Bacterial sec-independent translocation protein mttA/Hcf106:Twin-arginine translocation protein TatB:Twin-arginine translocat...	sec-independent protein translocase, protein	Evidence 2b : Function of strongly homologous gene; PubMedId : 12823967, 14580344; Product type t : transporter twin-arginine translocase subunit, sec-independent protein export	
HELPY00316	Guanylate kinase	guanylate kinase	guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	CDS_ID OB1502 guanylate kinase	Guanylate kinase	similar to AX064675-1|CAC25577.1| percent identity: 88 in 189 aa putative guanylate kinase	Guanylate kinase	guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	SC9C5.03c, probable guanylate kinase, len: 197 aa; similar to SW:KGUA_ECOLI (EMBL:M84400) Escherichia coli guanylate kinase (EC 2.7.4.8) Gmk, 207 aa; fasta scores: opt: 512 z-score: 591.3 E(): 1.8e-25; 45.5% identity in 178 aa overlap. Contains Pfam match to entry PF00625 Guanylate_kin, Guanylate kinase and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00856 Guanylate kinase signature putative guanylate kinase	Guanylate kinase	
HELPY00317	Poly E-rich protein	Putative uncharacterized protein	identified by similarity to OMNI:NTL01HP00303 conserved hypothetical protein	Putative uncharacterized protein	Putative	hypothetical protein, similar to smooth muscle caldesmon	ribonuclease	Putative uncharacterized protein	transcript_id=ENSGACT00000022307	poly E-rich protein	lipoprotein (VmcA) Expression of the translation product is demonstrated by specific antibody to a synthetic peptide encoded by the ORF. Product partitions in Triton X-114 phase of detergent fractionated organisms, consistent with a cell-associated lipoprotein encoding an otherwise hydrophilic sequence. Product is also defined by peptide mass mapping using mass spectrometry. Tandem repeat sequence occurs in the ORF. Tandem nucleotide repeats of TA occur 5' of the ORF in a putative promoter region; this tract is possibly subject to dinucleotide indels governing phase variable expression of the gene. The vmcA gene is located in the same genomic position relative to upstream conserved adjacent housekeeping genes as the vmm gene in M.  mycoides SC	transcript_id=ENSFCAT00000002877	transcript_id=ENSOGAT00000011963	transcript_id=ENSSTOT00000002463	conserved hypothetical protein hypothetical protein	transcript_id=ENSMLUT00000000135	conserved hypothetical protein	predicted protein	Lodderomyces elongisporus (LELG_03349.1) hypothetical protein (translation)	predicted protein	Putative uncharacterized protein	Putative uncharacterized protein	conserved hypothetical protein KEGG: sav:SAV1738 hypothetical protein	hypothetical protein	jgi|Helro1|172494	Saccharopine dehydrogenase	jgi|Lotgi1|110705|e_gw1.12.231.1	Putative uncharacterized protein	
HELPY00318	Membrane bound endonuclease	Putative ENDONUCLEASE	transcript_id=ENSGACT00000025763	membrane bound endonuclease	transcript_id=ENSFCAT00000005696	Phosphatidylserine/phosphatidylglycerophosphate, cardioli pin synthase and related enzyme	putative endonuclease membrane bound endonuclease (nuc) Function unclear	Membrane bound endonuclease	Putative uncharacterized protein	Phospholipase D/Transphosphatidylase	Membrane bound endonuclease	Phospholipase D (PLD) family protein	Membrane bound endonuclease	Edta-resistant nuclease	Membrane bound endonuclease	
HELPY00319	Outer membrane protein	Putative Outer membrane protein	outer membrane protein HorC	outer membrane protein 13 hypothetical protein	Outer membrane protein HorC	Outer membrane protein	Outer membrane protein HorC	
HELPY00320	Flagellar L-ring protein	Flagellar L-ring protein precursor	Flagellar L-ring protein	flagellar L-ring protein FlgH	Flagellar L-ring protein	Flagellar L-ring protein	Flagellar L-ring protein	Residues 3 to 237 of 237 are 100 pct identical to residues 1 to 235 of a 235 aa protein from Escherichia coli dbj: BAA35888.1 Flagellar basal body L-ring protein precursor	Flagellar L-ring protein 2	Flagellar L-ring protein	Flagellar L-ring protein	Flagellar L-ring protein	Flagellar L-ring protein	flagellar L-ring protein precursor FlgH	conserved gene flagellar L-ring protein FlgH	flagellar L-ring protein precursor FlgH	identified by similarity to SP:P75940; match to protein family HMM PF02107 flagellar L-ring protein FlgH	Flagellar L-ring protein 1	identified by similarity to SP:P75940; match to protein family HMM PF02107 flagellar L-ring protein FlgH	Flagellar L-ring protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar L-ring protein	IPR000527: Flagellar L-ring protein flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring protein	similar to Salmonella typhi CT18 flagellar L-ring protein precursor flagellar L-ring protein precursor	Flagellar L-ring protein	similar to BRA0158, flagellar L-ring protein FlgH FlgH, flagellar L-ring protein	Flagellar L-ring protein	Flagellar L-ring protein precursor	Flagellar L-ring protein 1	Basal body L-ring protein; COG2063 flagellar L-ring protein precursor	
HELPY00321	CMP-N-acetylneuraminic acid synthetase	Putative Cytidylyltransferase	Cytidylyltransferase domain protein	Cytidylyltransferase domain protein	Cytidylyltransferase domain protein	Cytidylyltransferase domain protein	Cytidylyltransferase domain protein	Cytidylyltransferase domain protein	
HELPY00323	Tetraacyldisaccharide 4'-kinase	identified by similarity to SP:P27300; match to protein family HMM PF02606 tetraacyldisaccharide 4'-kinase	Lipid A biosynthesis protein LpxK	Tetraacyldisaccharide 4'-kinase	lipid A 4'-kinase; Similar to: HI0059, LPXK_HAEIN tetraacyldisaccharide 4'-kinase	Lipid-A-disaccharide synthase	tetraacyldisaccharide 4'-kinase	putative tetraacyldisaccharide-1-P 4-kinase	tetraacyldisaccharide 4'-kinase (lipid A 4' kinase)	tetraacyldisaccharide-1-P 4'-kinase identified by match to protein family HMM PF02606	tetraacyldisaccharide 4'-kinase KEGG: dps:DP1938 related to tetraacyldisaccharide 4'-kinase (LpxK) TIGRFAM: tetraacyldisaccharide 4'-kinase PFAM: Tetraacyldisaccharide-1-P 4'-kinase	tetraacyldisaccharide 4'-kinase Tetraacyldisaccharide 4-kinase (EC 2.7.1.130) (Lipid A 4-kinase),lipid A biosynthesis protein LpxK High confidence in function and specificity	tetraacyldisaccharide 4'-kinase identified by match to protein family HMM PF02606	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Lipid A biosynthesis protein LpxK	Tetraacyldisaccharide-1-P 4'-kinase	Tetraacyldisaccharide-1-P 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide-1-P 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	
HELPY00322	Flagellar protein G	Putative FLAGELLAR BIOSYNTHESIS PROTEIN	flagellar biosynthesis protein G	GNAT family acetyltransferase-possibly polyami ne acetyltransferase	acetyltransferase, gnat family identified by match to protein family HMM PF00583	flagellar protein G Function unclear	acetyltransferase-like protein KEGG: sdn:Sden_3109 acetyltransferases including N-acetylases of ribosomal proteins-like protein	Flagellin modification protein FlmH	acetyltransferase, GNAT family identified by match to protein family HMM PF00583	Acetyltransferase, GNAT family	GCN5-related N-acetyltransferase	Putative uncharacterized protein	Acetyltransferase, gnat family	Putative uncharacterized protein	Flagellar biosynthesis protein G	Flagellar biosynthesis protein G	Pseudaminic acid biosynthesis N-acetyl transferase	Flagellar biosynthesis protein G	Putative flagellar biosynthesis protein	
HELPY00324	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH3-dependent NAD+ synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	SCF6.02, nadE1, probable NH(3)-dependent NAD(+)synthetase, len: 276 aa. Highly similar to many e.g.  Bacillus subtilis SW: NADE_BACSU (EMBL; M15811) NH(3)-dependent NAD(+) synthetase (EC 6.3.5.1) (spore outgrowth factor B) (sporulation protein OutB) (general stress protein 38) (Gsp38) (272 aa), fasta scores opt: 901 z-score: 1027.2 E():0 53.9% identity in 267 aa overlap. NH(3)-dependent NAD(+)synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	Residues 1 to 275 of 275 are 97 pct identical to residues 1 to 275 of a 275 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288173.1 NAD synthetase, prefers NH3 over glutamine	NH3-dependent NAD+ synthetase	NH(3)-dependent NAD(+) synthetase	NadE protein	NH(3)-dependent NAD+ synthetase	identified by similarity to EGAD:91684; match to protein family HMM PF02540; match to protein family HMM TIGR00552 NH(3)-dependent NAD+ synthetase	NH(3)-dependent NAD(+) synthetase	NH(3)-dependent NAD(+) synthetase	identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552 NAD+ synthetase	InterProMatches:IPR003694; Molecular Function: NAD+ synthase (glutamine-hydrolyzing) activity (GO:0003952), Molecular Function: ATP binding (GO:0005524), Biological Process: NAD biosynthesis (GO:0009435) NH3-dependent NAD+ synthetase	NAD(+) synthase, glutamine-hydrolyzing	COG0171 NAD synthase NAD-synthetase	NH(3)-dependent NAD(+) synthetase	
HELPY00325	Ketol-acid reductoisomerase	ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	CDS_ID OB2621 ketol-acid reductoisomerase	similar to AE007128-6|AAK47410.1| percent identity: 72 in 337 aa ketol-acid reductoisomerase	ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	Ketol-acid reductoisomerase	identified by similarity to EGAD:22947; match to protein family HMM PF01450; match to protein family HMM TIGR00465 ketol-acid reductoisomerase	ketol-acid reductoisomerase	identified by match to protein family HMM PF01450; match to protein family HMM TIGR00465 ketol-acid reductoisomerase	Ketol-acid reductoisomerase	ketol-acid reductoisomerase	
HELPY00326	Septum site-determining protein minD	ATPase involved in chromosome partitioning	Septum site-determining protein MinD	inhibition of cell division factor	CELL DIVISION INHIBITOR MIND	Septum site-determining protein minD	CDS_ID OB2049 septum site-determining protein	cell division inhibitor MinD	Septum site-determining protein MinD, ATPase	Septum site-determining protein	Septum site-determining protein minD	Septum formation inhibitor-activating ATPase	Septum formation inhibitor-activating ATPase	MinD protein	Residues 1 to 270 of 270 are 100 pct identical to residues 1 to 270 of a 270 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287414.1 cell division inhibitor, a membrane ATPase, activates minC	Septum site-determining protein	MinD protein	Probable septum site-determining protein mind	Septum site-determining protein	Septum site-determining protein (Cell division inhibitor)	conserved gene septum site-determining protein MinD	Septum site-determining protein (Cell division inhibitor)	Septum site-determining protein MinD	septum site-determining protein MinD	Septum site-determining protein minD	Septum site-determining protein	Septum formation inhibitor-activating ATPase	Cell division inhibitor MinD protein	InterProMatches:IPR010223; cell-division inhibition (septum placement) ATPase activator of MinC	
HELPY00327	Cell division topological specificity factor	Cell division topological specificity factor	Cell division topological specificity factor	Septum formation topological specificity factor MinE	cell division topological specificity factor MinE identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215	cell division topological specificity factor	cell division topological specificity factor MinE	cell division topological specificity factor Cell division topological specificity factor High confidence in function and specificity	cell division topological specificity factor MinE identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215	Cell division topological specificity factor MinE	Cell division topological specificity factor MinE	Cell division topological specificity factor MinE	Cell division topological specificity factor	Cell division topological specificity factor MinE	Cell division topological specificity factor MinE	Cell division topological specificity factor MinE	Cell division topological specificity factor MinE	Cell division topological specificity factor	Cell division topological specificity factor MinE	Cell division topological specificity factor	Cell division topological specificity factor MinE	
HELPY00328	DNA processing chain A	Putative DNA processing Smf protein	CDS_ID OB1545; Smf family DNA processing protein	DNA processing protein DprA, putative	SMF protein	DNA uptake protein	Lin1313 protein	DNA processing chain A	Smf protein	Similar to predicted Rossmann fold nucleotide-binding protein involved in DNA uptake hypothetical protein	DNA processing protein	Smf protein	DNA processing protein, Smf family	identified by similarity to OMNI:HP0333; match to protein family HMM PF02481; match to protein family HMM TIGR00732 DNA processing protein A	InterProMatches:IPR003488; involved in competence, Biological Process: DNA mediated transformation (GO:0009294) DNA processing Smf protein homolog	SMF family DNA processing protein chainA	DNA processing protein DprA	Putative uncharacterized protein gbs1041	Putative	identified by match to PFAM protein family HMM PF02481 DprA/SMF protein, putative DNA processing factor	Putative DNA processing protein	best blastp match gb|AAK34034.1| (AE006557) putative DNA processing protein (Smf family) [Streptococcus pyogenes M1 GAS] putative DNA processing protein	identified by similarity to OMNI:NTL01LI1302; match to protein family HMM PF02481; match to protein family HMM TIGR00732 Smf family protein	DNA processing protein, Smf family	nucleotide-binding protein, Smf family	similar to Rossmann fold nucleotide-binding protein involved in DNA uptake	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 DNA processing protein DprA, putative	hypothetical protein	similar to gi|57286004|gb|AAW38098.1| [Staphylococcus aureus subsp. aureus COL], percent identity 50 in 296 aa, BLASTP E(): 1e-71 DprA SMF protein putative DNA processing factor	
HELPY00329	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Putative Holliday junction resolvase	hypothetical protein	putative Holliday junction resolvase identified by match to protein family HMM PF03652	putative Holliday junction resolvase Putative Holliday junction resolvase (EC 3.1.-.-) High confidence in function and specificity	conserved hypothetical protein TIGR00250 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250	Putative uncharacterized protein	Putative uncharacterized protein	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Holliday junction resolvase-like protein	Holliday junction resolvase-like protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative Holliday junction resolvase	Putative holliday junction resolvase	


HELPY00331	Beta-lactamase hcpB	Putative uncharacterized protein	Beta-lactamase HcpA	Cysteine-rich protein H	
HELPY00332	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00333	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00334	Lysozyme	Phage-related lysozyme	Phage lysozyme	Phage lysozyme	Lysozyme	
HELPY00335	Putative uncharacterized protein	
HELPY00337	Putative uncharacterized protein	conserved hypothetical protein identified by match to protein family HMM PF06961	hypothetical protein similarity to COG3326 Predicted membrane protein	Predicted membrane protein	Putative uncharacterized protein precursor	Putative membrane protein	YsdA	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	protein of unknown function DUF1294 PFAM: protein of unknown function DUF1294; KEGG: cth:Cthe_0204 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	protein of unknown function DUF1294 PFAM: protein of unknown function DUF1294; KEGG: pjd:Pjdr2_3342 protein of unknown function DUF1294	
HELPY00337	Putative uncharacterized protein	conserved hypothetical protein identified by match to protein family HMM PF06961	hypothetical protein similarity to COG3326 Predicted membrane protein	Predicted membrane protein	Putative uncharacterized protein precursor	Putative membrane protein	YsdA	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	protein of unknown function DUF1294 PFAM: protein of unknown function DUF1294; KEGG: cth:Cthe_0204 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	protein of unknown function DUF1294 PFAM: protein of unknown function DUF1294; KEGG: pjd:Pjdr2_3342 protein of unknown function DUF1294	



HELPY00342	Uncharacterized RNA pseudouridine synthase HP_0347	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase c	Pseudouridine synthase	identified by match to protein family HMM PF00849 RNA pseudouridylate synthase family protein	ribosomal large subunit pseudouridine synthase D	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark pseudouridylate synthase	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Hypothetical RNA pseudouridine synthase JHP0321	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthase, RluD subfamily	pseudouridylate synthase; uracil hydrolyase; Similar to: HI0617, RLUA_HAEIN ribosomal large subunit pseudouridine synthase A	Pseudouridylate synthases, 23S RNA-specific RluA protein	Predicted pseudouridylate synthase, Rlu family	pseudouridylate synthase	Ribosomal large subunit pseudouridine synthase A	identified by match to protein family HMM PF00849 RNA pseudouridine synthase family protein	Pseudouridine synthase	Pseudouridine synthase, RluD	Pseudouridine synthase, 23S-rRNA-specific	transcript_id=ENSDNOT00000003720	Pseudouridylate synthases, 23S RNA-specific COG0564	pseudouridylate synthase	putative pseudouridylate synthase	Pseudouridylate synthase	Pseudouridylate synthase	pseudouridine synthase D	pseudouridylate synthase family protein, yabo B. subtilis ortholog; identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005	
HELPY00341	Putative uncharacterized protein	conserved hypothetical protein Region start changed from 859755 to 860022 (267 bases)	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00343	Single-stranded-DNA-specific exonuclease	single-strand-DNA-specific exonuclease	single strand DNAspecific exonuclease	Single-stranded-DNA-specific exonuclease RecJ	SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ	Single-stranded-DNA-specific exonuclease RecJ	SsDNA exonuclease, 5'--] 3' specific	Putative ssDNA-specific exonuclease	single-strand DNA-specific exonuclease	Single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease	Putative single-strand DNA-specific exonuclease	SsDNA Exonuclease, RecJ	Single-stranded DNA-specific exonuclease	Single-stranded DNA-specific exonuclease	SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ	Single-stranded-DNA-specific exonuclease	Single-stranded DNA exonuclease	Residues 1 to 577 of 577 are 99 pct identical to residues 1 to 577 of a 577 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289461.1 ssDNA exonuclease, 5' --> 3' specific	SsDNA Exonuclease	Single-stranded-DNA-specific exonuclease	RecJ: single-stranded-DNA-specific exonuclease	Similar to single-strand DNA-specific exonuclease	RecJ protein	Probable single-stranded-dna-specific exonuclease protein	Single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	conserved gene single stranded DNA specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	
HELPY00344	CTP synthase	CTP synthetase	CTP synthetase (UTP--ammonia ligase)	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthetase	CTP synthase	CTP synthetase	CTP synthase	CTP synthase	CTP synthase	CDS_ID OB3007; UTP-ammonia ligase CTP synthase	CTP synthase	similar to AX064715-1|CAC25597.1| percent identity: 83 in 551 aa putative CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	SCI51.16c, pyrG, probable CTP synthetase, len: 549 aa; highly similar to many CTP synthetases e.g.  SW:PYRG_MYCTU (EMBL:Z98268, U88301), pyrG, Mycobacterium tuberculosis and Mycobacterium bovis CTP synthetase (586 aa), fasta scores; opt: 2622 z-score: 2909.4 E(): 0, 70.3% identity in 552 aa overlap. Contains PS00442 Glutamine amidotransferases class-I active site putative CTP synthetase	
HELPY00345	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00346	Flagellar basal-body M-ring protein	Flagellar biosynthesis; basal-body MS(Membrane and supramembrane)-ring and collar protein	Flagellar M-ring protein FliF	Putative flagellar M-ring protein	Flagellar basal body M-ring protein FliF	Flagellar basal-body M-ring protein	Flagellar M-ring protein	Lin0721 protein	FliF	similar to Escherichia coli K12 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein gi: 1788248 (553 aa). BLAST with identity of 96% in 553 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct. pseudo	Flagellar M-ring protein	FliF; flagellar M-ring transmembrane protein	FliF protein	Probable flagellar m-ring transmembrane protein	Flagellar basal-body M-ring protein	Flagellar M-ring protein	conserved gene flagellar basal body M-ring protein FliF	Flagellar M-ring protein	identified by similarity to SP:P25798; match to protein family HMM PF01514; match to protein family HMM TIGR00206 flagellar M-ring protein FliF	Flagellar M-ring protein	identified by similarity to SP:P25798; match to protein family HMM PF01514; match to protein family HMM TIGR00206 flagellar M-ring protein FliF	InterProMatches:IPR000067, IPR001899; Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Cellular Component: flagellar basal body, MS ring (sensu Bacteria) (GO:0009431),Cellular Component: cell surface (GO:0009986) flagellar basal-body M-ring protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar protein	IPR000067: Flagellar FliF M-ring protein flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein	similar to Salmonella typhi CT18 flagellar basal-body M-ring protein flagellar basal-body M-ring protein	Flagellar basal body M-ring protein FliF	Flagellar protein	FLAGELLAR M-RING PROTEIN	Flagellar M-ring protein	
HELPY00347	Flagellar motor switch protein	Flagellar motor switch protein FliG	Polar flagellar motor switch protein FliG	Flagellar motor switch protein fliG	CDS_ID OB1556 flagellar motor switch protein	Flagellar motor switch protein FliG	Putative flagellar motor switch protein	Flagellar motor switch protein FliG	Flagellar motor switch protein	Flagellar motor switch protein	Flagellar motor switch protein fliG	Flagellar motor switch protein	Flagellar motor switch protein	FliG	Residues 1 to 317 of 317 are 99 pct identical to residues 15 to 331 of a 331 aa protein from Escherichia coli O157:H7 ref: NP_310705.1 flagellar motor switch protein FliG	Flagellar motor switch protein FliG	Flagellar motor switch protein FliG	FliG protein	Probable flagellar motor switch protein flig	Flagellar motor switch protein FliG	Flagellar motor switch protein	conserved gene flagellar motor switch protein FliG	Flagellar motor switch protein	Flagellar motor switch protein	identified by similarity to SP:P23448; match to protein family HMM PF01706; match to protein family HMM TIGR00207 flagellar motor switch protein FliG	InterProMatches:IPR000090; Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Biological Process: chemotaxis (GO:0006935), Cellular Component: flagellum (sensu Bacteria) (GO:0009288) flagellar motor switch protein	flagellar motor switch protein FliG	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar protein	IPR000090: Flagellar motor switch protein FliG flagellar biosynthesis, component of motor switching and energizing	
HELPY00348	Flagellar export protein	flagellar assembly protein	Flagellar assembly protein FliH	Putative FLAGELLAR EXPORT APPARATUS	Putative flagellar assembly protein	flagellar export protein	flagellar assembly protein FliH	flagellar assembly protein	flagellar assembly protein	flagellar export protein High confidence in function and specificity	flagellar assembly protein FliH, putative	Flagellar biosynthesis/type III secretory pathway protein-like protein	flagellar assembly protein FliH PFAM: flagellar assembly protein FliH KEGG: rfr:Rfer_0552 flagellar assembly protein FliH	Putative flagellar assembly protein FliH	Flagellar assembly protein FliH	Putative flagellar assembly protein	Probable flagellar assembly protein	FliH	Flagellar assembly protein	Flagellar assembly protein	Flagellar assembly protein flih, putative	Flagellar assembly protein H	Flagellar export protein	Flagellar assembly protein FliH	Flagellar assembly protein FliH	Flagellar assembly protein FliH	Flagellar biosynthesis protein FliH	Flagellar export protein	Flagellar assembly protein FliH, putative	
HELPY00349	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-xylulose 5-phosphate synthase	1-deoxy-D-xylulose 5-phosphate synthase(1-deoxyxylulose-5-phosphate synthase)	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	similar to AB042821-1|BAB20589.1| percent identity: 54 in 634 aa putative 1-deoxyxylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-D-deoxyxylulose 5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxyxylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	Residues 1 to 620 of 620 are 99 pct identical to residues 1 to 620 of a 620 aa protein from Escherichia coli K12 ref: NP_414954.1 1-deoxyxylulose-5-phosphate synthase; flavoprotein	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	
HELPY00350	GTP-binding protein lepA	glr2763	GTP-binding protein	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	CDS_ID OB1972; elongation factor family GTP-binding protein	GTP-binding protein lepA	similar to Z81368-20|CAB03723.1| percent identity: 78 in 609 aa putative GTP-binding membrane protein LepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	
HELPY00351	Putative uncharacterized protein	Conserved hypothetical protein	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein equivalent gene in S.pneumoniae R6 = spr0493	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00352	Short chain alcohol dehydrogenase	Residues 6 to 253 of 253 are 98 pct identical to residues 1 to 248 of a 248 aa protein from Escherichia coli K12 ref: NP_416057.1 putative oxidoreductase	Probable oxidoreductase protein	Similar to probable oxidoreductase YdfG of Escherichia coli	Short chain dehydrogenase	identified by match to protein family HMM PF00106 oxidoreductase, short chain dehydrogenase/reductase family	similar to Salmonella typhi CT18 putative oxidoreductase putative oxidoreductase	Oxidoreductase	Putative uncharacterized protein gbs1158	Oxidoreductase	Putative oxidoreductase	identified by match to PFAM protein family HMM PF00106 oxidoreductase, short chain dehydrogenase/reductase family	Probable oxidoreductase in dcp-nohA intergenic region	best blastp match gb|AAK02663.1| (AE006093) YdfG [Pasteurella multocida] putative short chain dehydrogenase/reductase	Similar to: HI1430, YDFG_HAEIN conserved hypothetical oxidoreductase	Short-chain dehydrogenases of various substrate specificities DltE protein	Oxidoreductase, short chain dehydrogenase/reductase family	oxidoreductase	Putative oxidoreductase	Short-chain dehydrogenase/reductase SDR	Best Blastp Hit: pir||D81878 probable oxidoreductase NMA1120 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379814|emb|CAB84382.1| (AL162755) putative oxidoreductase [Neisseria meningitidis] COG0300 Short-chain dehydrogenases of various putative oxidoreductase	short chain dehydrogenase	Code: R; COG: COG4221 putative oxidoreductase	Code: R; COG: COG4221 putative oxidoreductase	Short-chain dehydrogenase/reductase SDR	oxidoreductase, short chain dehydrogenase/reductase family identified by match to protein family HMM PF00106; match to protein family HMM PF01370	putative oxidoreductase	Short chain dehydrogenase	Short chain dehydrogenase	
HELPY00353	Putative uncharacterized protein	Putative Outer membrane protein	putative outer membrane protein	putative outer membrane protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative outer membrane protein	Putative outer membrane protein	Outer membrane protein	
HELPY00356	tRNA pseudouridine synthase A	pseudouridylate synthaseI	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	CDS_ID OB0150 tRNA pseudouridine synthase A	tRNA pseudouridine synthase A 1	tRNA-pseudouridine synthase (EC 5.4.99.12)	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	Pseudouridylate synthase	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	Residues 1 to 270 of 270 are 99 pct identical to residues 1 to 270 of a 270 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288892.1 pseudouridylate synthase I	tRNA pseudouridine synthase A	
HELPY00355	UDP-glucose 4-epimerase	UDP-galactose 4-epimerase	SCE50.16, galE2, UDP-glucose 4-epimerase, len: 326 aa; highly similar to SW:EXOB_AZOBR (EMBL:Z25478) Azospirillum brasilense UDP-glucose 4-epimerase (EC 5.1.3.2) ExoB, 348 aa; fasta scores: opt: 885 z-score: 970.7 E(): 0; 46.4% identity in 319 aa overlap and to SW:GALE_STRLI (EMBL:M18953) Streptomyces lividans UDP-glucose 4-epimerase (EC 5.1.3.2) GalE, 329 aa; fasta scores: opt: 793 z-score: 870.9 E(): 0;42.7% identity in 328 aa overlap. Contains Pfam match to entry PF01370 Epimerase, NAD dependent epimerase/dehydratase family UDP-glucose 4-epimerase	identified by similarity to SP:Q59083; match to protein family HMM PF01370; match to protein family HMM TIGR01179 UDP-glucose 4-epimerase	UDP-glucose 4-epimerase	UDP-glucose 4-epimerase	UDP-GLUCOSE 4-EPIMERASE	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative UDP-galactose 4-epimerase (GalE-like)	UDP-glucose 4-epimerase	UDP-galactose 4-epimerase, truncation	UDP-glucose 4-epimerase	UDP-galactose 4-epimerase	UDP-glucose 4-epimerase	UDP-glucose 4-epimerase	UDP-glucose 4-epimerase protein similar to galE (SMc02252) [Sinorhizobium meliloti] and AGR_C_938p [Agrobacterium tumefaciens] Similar to swissprot:Q92S70 Putative location:bacterial inner membrane Psort-Score: 0.1277; go_function: isomerase activity [goid 0016853]; go_function: catalytic activity [goid 0003824]; go_function: UDP-glucose 4-epimerase activity [goid 0003978]; go_process: nucleotide-sugar metabolism [goid 0009225]; go_process: galactose metabolism [goid 0006012]	UDP-glucose 4-epimerase	UDP-glucose 4-epimerase	UDP-glucose 4-epimerase	UDP-glucose 4-epimerase	UDP-galactose 4-epimerase COG1087 UDP-glucose 4-epimerase	UDP-glucose 4-epimerase TIGRFAM: UDP-glucose 4-epimerase PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain KEGG: hch:HCH_04939 UDP-glucose 4-epimerase	High confidence in function and specificity	UDP-glucose 4-epimerase TIGRFAM: UDP-glucose 4-epimerase PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain KEGG: gsu:GSU2240 UDP-glucose 4-epimerase	UDP-glucose 4-epimerase identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179	UDP-glucose 4-epimerase	Putative UDP-galactose 4-epimerase	NAD-dependent epimerase/dehydratase family protein equivalent gene in S.pneumoniae TIGR4 = SP1867; equivalent gene in S.pneumoniae R6 = spr1683; identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993	UDP-glucose 4-epimerase	UDP-galactose 4-epimerase	
HELPY00357	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative	Predicted permease YjgP/YjgQ family protein	Conserved hypothetical membrane protein	permease YjgP/YjgQ	Permease YjgP/YjgQ	conserved hypothetical integral membrane protein	putative permease, YjgP/YjgQ family identified by match to protein family HMM PF03739	permease YjgP/YjgQ family protein PFAM: permease YjgP/YjgQ family protein KEGG: sat:SYN_00414 permease	permease, putative	conserved hypothetical protein Predicted permease Function unclear	permease YjgP/YjgQ family protein PFAM: permease YjgP/YjgQ family protein KEGG: gme:Gmet_1249 permease YjgP/YjgQ	putative membrane protein identified by match to protein family HMM PF03739	membrane protein, putative identified by match to protein family HMM PF03739	Conserved hypothetical membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	Putative permease	Putative uncharacterized protein	Conserved hypothetical membrane protein	Permease YjgP/YjgQ family protein	hypothetical protein	Permease YjgP/YjgQ	Permease YjgP/YjgQ	Putative uncharacterized protein	Putative permease, YjgP/YjgQ family	Permease YjgP/YjgQ family protein precursor	
HELPY00358	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	Residues 1 to 208 of 208 are 99 pct identical to residues 1 to 208 of a 208 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289292.1 L-isoaspartate protein carboxylmethyltransferase type II	Protein-L-isoaspartate O-methyltransferase	protein-L-isoaspartate carboxylmethyltransferase, flame shift	Protein-L-isoaspartate O-methyltransferase	identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080 protein-L-isoaspartate O-methyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark L-isoaspartate protein carboxylmethyltransferase type II	IPR000051: SAM (and some other nucleotide) binding motif; IPR000682: Protein-L-isoaspartate(D-aspartate) O-methyltransferase L-isoaspartate protein carboxylmethyltransferase type II	similar to Salmonella typhi CT18 L-isoaspartyl protein carboxyl methyltransferase type II L-isoaspartyl protein carboxyl methyltransferase type II	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080 protein-L-isoaspartate O-methyltransferase	Hypothetical L-isoaspartyl protein carboxyl methyltransferase	identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 protein-L-isoaspartate O-methyltransferase	identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 protein-L-isoaspartate O-methyltransferase	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	
HELPY00359	Ribonucleoside-diphosphate reductase subunit beta	Ribonucleoside-diphosphate reductase, beta subunit	Ribonucleoside-diphosphate reductase beta chain	Ribonucleoside-diphosphate reductase, beta subunit	Ribonucleoside-diphosphate reductase 1 subunit beta	CDS_ID OB3087 ribonucleoside-diphosphate reductase beta subunit	similar to AF050168-1|AAC14561.1| percent identity: 66 in 324 aa putative ribonucleotide reductase	Probable ribonucleoside-diphosphate reductase small chain	Ribonucleoside-diphosphate reductase, beta subunit	Ribonucleoside-diphosphate reductase beta chain	Ribonucleotide reductase beta subunit	Ribonucleoside-diphosphate reductase, beta chain	Ribonucleoside-diphosphate reductase subunit beta	Ribonucleoside-diphosphate reductase subunit beta	SC7E4.22c, nrdM, ribonucleotide-diphosphate reductase small chain, len: 343 aa; identical to previously sequenced TR:CAB82486 (EMBL:AJ276618) Streptomyces coelicolor A3(2) ribonucleotide-diphosphate reductase small chain (EC 1.17.4.1) NrdM, 343 aa. Contains Pfam match to entry PF00268 ribonuc_red, Ribonucleotide reductases and a possible hydrophobic membrane spanning region ribonucleotide-diphosphate reductase small chain	Ribonucleotide reductase beta chain	Ribonucleotide reductase, beta subunit	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN	Residues 78 to 453 of 453 are 99 pct identical to residues 1 to 376 of a 376 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288809.1 ribonucleoside diphosphage reductase 1, beta subunit, B2	Ribonucleoside-diphosphate reductase subunit beta	Ribonucleoside-diphosphate reductase 1 beta chain	Ribonucleotide reductase	Putative transmembrane ribonucleoside reductase (Small chain) oxidoreductase protein	Ribonucleoside-diphosphate reductase 1 beta chain	Similar to ribonucleoside-diphosphate reductase, beta subunit hypothetical protein	conserved gene ribonucleoside-diphosphate reductase, beta subunit	Similar to ribonucleoside-diphosphate reductase, beta subunit hypothetical protein	Ribonucleoside-diphosphate reductase system	identified by match to protein family HMM PF00268 ribonucleoside-diphosphate reductase, beta subunit	
HELPY00361	Spore coat polysaccharide biosynthesis protein C	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis	identified by match to protein family HMM PF01041 aminotransferase, DegT/DnrJ/EryC1/StrS family	Putative uncharacterized protein	Putative SUGAR NUCLEOTIDE BIOSYNTHESIS	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative aminotransferase, DegT/DnrJ/EryC1/StrS	DegT/DnrJ/EryC1/StrS aminotransferase	DegT/DnrJ/EryC1/StrS aminotransferase	spore coat polysaccharide biosynthesis protein C	DegT/DnrJ/EryC1/StrS aminotransferase	DegT/DnrJ/EryC1/StrS aminotransferase	Predicted pyridoxal phosphate-dependent enzyme apparently	DegT/DnrJ/EryC1/StrS aminotransferase PFAM: DegT/DnrJ/EryC1/StrS aminotransferase KEGG: aeh:Mlg_2323 DegT/DnrJ/EryC1/StrS aminotransferase	probable sugar nucleotide biosynthesis High confidence in function and specificity	lipopolysaccharide O-Ag biosynthesis protein FlmB identified by similarity to GB:AAD45657.1; match to protein family HMM PF01041; match to protein family HMM PF01212	Probable aminotransferase WbpE	DegT/DnrJ/EryC1/StrS aminotransferase	Pleiotropic regulatory protein DegT	DegT/DnrJ/EryC1/StrS aminotransferase	Aminotransferase, DegT/DnrJ/EryC1/StrS family	Glutamine--scyllo-inositol transaminase	DegT/DnrJ/EryC1/StrS aminotransferase	DegT/DnrJ/EryC1/StrS aminotransferase family protein	Sugar aminotransferase	DegT/DnrJ/EryC1/StrS aminotransferase	DegT/DnrJ/EryC1/StrS aminotransferase	Spore coat polysaccharide biosynthesis protein SpsC	DegT/DnrJ/EryC1/StrS aminotransferase	DegT/DnrJ/EryC1/StrS aminotransferase PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase KEGG: pca:Pcar_1141 pyridoxal-phosphate-dependent aminotransferase enzyme	
HELPY00362	Putative uncharacterized protein	hypothetical protein	hypothetical protein High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00363	Putative uncharacterized protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Type II R-M system restriction endonuclease	
HELPY00364	Putative uncharacterized protein	putative type II DNA modification enzyme (methyltransferase) (P29749) Modification methylase TthHB8I (EC 2.1.1.72) (Adenine-specific methyltransferase TthHB8I) (M.TthHB8I) hypothetical protein	Putative type II DNA modification enzyme	Putative type II DNA modification enzyme	Type II R-M system methyltransferase	
HELPY00364	Putative uncharacterized protein	putative type II DNA modification enzyme (methyltransferase) (P29749) Modification methylase TthHB8I (EC 2.1.1.72) (Adenine-specific methyltransferase TthHB8I) (M.TthHB8I) hypothetical protein	Putative type II DNA modification enzyme	Putative type II DNA modification enzyme	Type II R-M system methyltransferase	
HELPY00365	Biotin carboxylase	Putative acetyl-CoA carboxylase biotin carboxylase subunit	Acetyl-CoA carboxylase, biotin carboxylase	BIOTIN CARBOXYLASE	Putative acetyl-CoA carboxylase biotin carboxylase subunit	Acetyl-CoA carboxylase, biotin carboxylase	Biotin carboxylase	Biotin carboxylase	Biotin carboxylase	Acetyl-CoA carboxylase biotin carboxylase subunit	Biotin carboxylase	Residues 14 to 462 of 462 are 99 pct identical to residues 1 to 449 of a 449 aa protein from Escherichia coli K12 ref: NP_417722.1 acetyl CoA carboxylase, biotin carboxylase subunit	Biotin Carboxylase	Biotin carboxylase	AccC1; biotin carboxylase protein	AccC protein	Probable biotin carboxylase protein	Biotin carboxylase	Biotin carboxylase (A subunit of acetyl-CoA carboxylase)	conserved gene acetyl CoA carboxylase, biotin carboxylase subunit	Biotin carboxylase (A subunit of acetyl-CoA carboxylase)	Acetyl-CoA carboxylase, biotin carboxylase subunit	Biotin carboxylase	biotin carboxylase	identified by similarity to SP:P24182; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 acetyl-CoA carboxylase, biotin carboxylase	Biotin carboxylase protein	Biotin carboxylase subunit of acetyl CoA carboxylase	Biotin carboxylase	identified by similarity to SP:P24182; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 acetyl-CoA carboxylase, biotin carboxylase	
HELPY00366	Biotin carboxyl carrier protein	acetyl-CoA carboxylasesubunit (biotin carboxyl carrier subunit)	Putative biotoin carboxyl carrier protein	BIOTIN CARBOXYL CARRIER PROTEIN OF ACETYL-COA CARBOXYLASE	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Putative biotin carboxyl carrier protein of acetyl-CoA carboxylase	biotin carboxyl carrier protein of acetyl-CoA carboxylase	Acetyl-CoA carboxylase, biotin carboxyl carrier protein	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Acetyl-CoA carboxylase biotin carboxyl carrier subunit	Lin1393 protein	Acetyl-CoA carboxylase, biotin carboxyl carrier protein	Residues 1 to 156 of 156 are 100 pct identical to residues 1 to 156 of a 156 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289823.1 acetylCoA carboxylase, BCCP subunit; carrier of biotin	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Acetyl-CoA carboxylase biotin carboxyl carrier subunit	acetyl-CoA carboxylase biotin carboxyl carrier protein	conserved gene acetyl CoA carboxylase, biotin carboxyl carrier protein	acetyl-CoA carboxylase biotin carboxyl carrier protein	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	biotin carboxyl carrier protein of acetyl-CoA carboxylase	biotoin carboxyl carrier protein	InterProMatches:IPR001249; Molecular Function: acetyl-CoA carboxylase activity (GO:0003989), Biological Process: fatty acid biosynthesis (GO:0006633), Cellular Component: acetyl-CoA carboxylase complex (GO:0009317) acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit)	biotin carboxyl carrier subunit acetyl-CoA carboxylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark biotin carboxyl carrier protein of acetyl-CoA carboxilase	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	IPR000089: Biotin/lipoyl attachment; IPR001249: Acetyl-CoA biotin carboxyl carrier; IPR001882: Biotin-binding site acetylCoA carboxylase, BCCP subunit, carrier of biotin	similar to Salmonella typhi CT18 biotin carboxyl carrier protein biotin carboxyl carrier protein	
HELPY00367	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase, putative	Deoxycytidine triphosphate deaminase	similar to AL078610-8|CAB44381.1| percent identity: 68 in 190 aa putative dCTP deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	SCH35.46, deoxynucleotide triphosphate deaminase, len: 191 aa; highly similar to many e.g. TR:O07247 (EMBL:Z96800) Dcd from Mycobacterium tuberculosis (190 aa) fasta scores; opt: 981, z-score: 1187.0, E(): 0, (74.6% identity in 189 aa overlap) and SW:DCD_ECOLI dCTP deaminase from Escherichia coli (193 aa) fasta scores; opt: 405, z-score: 496.7, E(): 2.5e-20, (43.9% identity in 189 aa overlap). Contains Pfam match to entry PF00692 dUTPase, dUTPase and Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). putative deoxynucleotide triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	conserved gene deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	dCTP deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine deaminase	identified by match to protein family HMM PF00692 deoxycytidine triphosphate deaminase, putative	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Mb0329, dcd, len: 190 aa. Equivalent to Rv0321, len: 190 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 190 aa overlap). Probable dcd (alterrnate gene names: dus or paxA), deoxycytidine triphosphate deaminase (EC 3.5.4.13), equivalent to CAC32024.1|AL583925 probable deoxycytidine triphosphate deaminase from Mycobacterium leprae (190 aa). Also highly similar to others e.g.  Q9X8W0|DCD_STRCO|7480599|T36613|SCH35.46 DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE from Streptomyces coelicolor (191 aa); DCD_ECOLI|P28248|DUS|PAXA|B2065 DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE from Escherichia coli strain K12 (193 aa), FASTA scores: opt: 408, E(): 2.7e-21, (43.1% identity in 188 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE DCTP DEAMINASE FAMILY. PROBABLE DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE DCD (DCTP DEAMINASE)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine deaminase	
HELPY00368	Putative uncharacterized protein	outer membrane protein	Putative outer membrane protein	Outer membrane protein	Outer membrane protein HomC	
HELPY00369	Ribosomal RNA small subunit methyltransferase E	identified by similarity to SP:O25138; match to protein family HMM PF04452; match to protein family HMM TIGR00046 conserved hypothetical protein TIGR00046	Putative uncharacterized protein	Hypothetical UPF0088 protein JHP1007	Hypothetical protein	Similar to Q83AE1 Hypothetical protein from Coxiella burnetii (241 aa). FASTA: opt: 436 Z-score: 522.6 E(): 3.2e-21 Smith-Waterman score: 436; 36.667 identity in 240 aa overlap. ORF ftt1252 conserved hypothetical protein	Putative uncharacterized protein	hypothetical protein	PAS/PAC sensor signal transduction histidine kinase	conserved hypothetical protein Similar to Q83AE1 Hypothetical protein from Coxiella burnetii (241 aa). FASTA: opt: 436 Z-score: 522.6 E(): 3.2e-21 Smith-Waterman score: 436; 36.667 identity in 240 aa overlap. ORF ftt1252	conserved hypothetical protein identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046	conserved hypothetical protein Uncharacterized protein conserved in bacteria Specificity unclear	Hypothetical protein	conserved hypothetical protein TIGR00046 identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046	conserved hypothetical protein	conserved protein of unknown function	Hypothetical protein	Putative uncharacterized protein	protein of unknown function DUF558	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00370	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00371	Ferrochelatase	ferrochelatase	ferrochelatase (protoheme ferro-lyase)	Ferrochelatase	Ferrochelatase	Ferrochelatase	Ferrochelatase	Ferrochelatase	CDS_ID OB1168 ferrochelatase	Ferrochelatase	ferrochelatase (EC 4.99.1.1)	Ferrochelatase	Ferrochelatase	Ferrochelatase	SC9B10.26, hemH, probable ferrochelatase, len: 375 aa; similar to many eg. TR:D1022769 (EMBL:D85417) ferrochelatase (EC 4.99.1.1) from Propionibacterium freudenreichii (352 aa), fasta scores; opt: 491 z-score: 894.8 E(): 0, 42.5% identity in 369 aa overlap ferrochelatase	Ferrochelatase	Ferrochelatase	Residues 1 to 320 of 320 are 98 pct identical to residues 1 to 320 of a 320 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286216.1 ferrochelatase: final enzyme of heme biosynthesis	Ferrochelatase	Ferrochelatase	Ferrochelatase	Ferrochelatase	Ferrochelatase	Ferrochelatase	Ferrochelatase	similar to Protoheme ferro-lyase(ferrochelatase) hypothetical protein	conserved gene ferrochelatase	similar to Protoheme ferro-lyase(ferrochelatase) hypothetical protein	Ferrochelatase	
HELPY00372	Thiol:disulfide interchange protein (DsbC), putative	Putative	thiol:disulfide interchange protein	disulfide interchange protein High confidence in function and specificity	conserved hypothetical protein	Putative uncharacterized protein	Phosphoribosylformylglycinamidine cyclo-ligase	Putative uncharacterized protein	Thiol:disulfide interchange protein	Conserved hypothetical lipoprotein	Putative lipoprotein	Thiol:disulfide interchange protein	
HELPY00373	Cytochrome c biogenesis protein	Putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN	Cytochrome c assembly protein	cytochrome c-type biogenesis protein	cytochrome c assembly protein family membrane pr otein	cytochrome c biogenesis protein High confidence in function and specificity	cytochrome c biogenesis protein identified by match to protein family HMM PF01578	cytochrome c assembly protein	Cytochrome c biogenesis protein	Cytochrome c biogenesis protein, CcmF/CycK/CcsA family	Probable cytochrome c-type biogenesis protein	Cytochrome c biogenesis protein, CcmF/CycK/CcsA family	Putative uncharacterized protein	Cytochrome c assembly protein	Cytochrome c assembly protein	Cytochrome c assembly protein	Cytochrome c-type biogenesis protein	Cytochrome c assembly protein	Cytochrome c-type biogenesis protein	Cytochrome c biogenesis protein	Cytochrome c biogenesis protein	Cytochrome c biogenesis protein, CcmF/CycK/CcsA family	Cytochrome c assembly protein	Cytochrome C-type biogenesis protein	Cytochrome c assembly protein	Cytochrome c-type biogenesis protein CcsB	Cytochrome c biogenesis protein; putative membrane protein; putative signal peptide	Cytochrome c assembly protein	Putative cytochrome C-type biogenesis protein	

HELPY00375	NADP-specific glutamate dehydrogenase	Putative glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	Putative NADP-specific glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	similar to X72855-1|CAA51376.1| percent identity: 91 in 447 aa NADP-dependent glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	SCD31.08, gdhA, NADP-specific glutamate dehydrogenase, len: 461 aa; similar to TR:O87403 (EMBL:AF056335) Bacillus licheniformis NADP-specific glutamate dehydrogenase (EC 1.4.1.4) GdhA, 460 aa; fasta scores: opt: 1759 z-score: 1940.3 E(): 0; 59.1% identity in 435 aa overlap and to SW:DHE4_ECOLI (EMBL:J01615) Escherichia coli NADP-specific glutamate dehydrogenase (EC 1.4.1.4) GdhA, 447 aa; fasta scores: opt: 1683 z-score: 1856.8 E(): 0; 58.7% identity in 446 aa overlap. Contains Pfam match to entry PF00208 GLFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase and match to Prosite entry PS00074 Glu / Leu / Phe / Val dehydrogenases active site NADP-specific glutamate dehydrogenase	Lin0569 protein	Residues 1 to 388 of 388 are 98 pct identical to residues 60 to 447 of a 447 aa protein from Escherichia coli K12 ref: NP_416275.1 NADP-specific glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	Glutamate/leucine/phenylalanine/valine dehydrogenase	NADP-specific glutamate dehydrogenase	Glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	InterProMatches:IPR006095; Biological Process: amino acid metabolism (GO:0006520), Molecular Function: oxidoreductase activity (GO:0016491) glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	IPR006095: Glu/Leu/Phe/Val dehydrogenase glutamate dehydrogenase, NADP-specific	similar to Salmonella typhi CT18 NADP-specific glutamate dehydrogenase NADP-specific glutamate dehydrogenase	Glutamate dehydrogenase	Putative uncharacterized protein gbs1405	NADP-specific glutamate dehydrogenase	identified by match to PFAM protein family HMM PF00208 NADP-specific glutamate dehydrogenase	NADP-specific glutamate dehydrogenase	Glutamate dehydrogenase	identified by similarity to SP:P00370; match to protein family HMM PF00208; match to protein family HMM PF02812 glutamate dehydrogenase, NADP-specific	
HELPY00376	Protoporphyrinogen oxidase	HemK protein	METHYLTRANSFERASE	Protoporphyrinogen oxidase	HemK-family methytransferase	Possible protoporphyrinogen oxidase	similar to AL359152-5|CAB94532.1| percent identity: 46 in 280 aa putative protoporphyrinogen oxidase HemK	Putative HemK protein	protoporphyrinogen oxidase, hemK protein	Modification methylase, HemK family	Putative uncharacterized protein	Peptide release factor-glutamine N5- methyltransferase	Putative protoporphyrinogen oxidase, hemK protein	S-adenosylmethionine-dependent methyltransferase, HEMK ortholog	Methyltransferase	Protoporphyrinogen oxidase	Protein hemK homolog	Polypeptide chain release factor methylase	Methyltransferase, HemK family	2SC6G5.05, probable methylase, len: 281aa; similar to many eg. TR:P72542 (EMBL:U60417) PapM from Streptomyces pristinaespiralis which catalyses the two successive N-methylation steps of 4-amino-L-phenylalanine leading to DMPAPA via 4-methylamino-L-phenylalanine (292 aa) fasta scores; opt: 723, z-score: 865.6, E(): 0, 44.5% identity in 265 aa overlap. Contains Prosite match to PS00092 N-6 Adenine-specific DNA methylases signature and a possible membrane-spanning hydrophobic region. putative methylase	Predicted rRNA or tRNA methylase	Protoporphyrinogen oxidase	Methylase of polypeptide chain release factor	Lin2686 protein	Protoporphyrinogen oxidase protein	Protoporphyrinogen oxidase	Residues 1 to 277 of 277 are 100 pct identical to residues 1 to 277 of a 277 aa protein from Escherichia coli K12 ref: NP_415730.1 possible protoporphyrinogen oxidase	N6-adenine-specific DNA methylase	Putative protoporphyrinogen oxidase	
HELPY00377	Zinc-metallo protease	Predicted Zn-dependent protease with possible chaperone function	Zn-dependent protease with chaperone function	Peptidase family M48	Probable integral membrane protease transmembrane protein	Probable transmembrane protease	identified by match to protein family HMM PF01435 peptidase, M48 family	Biological Process: proteolysis and peptidolysis (GO:0006508), Molecular Function: metallopeptidase activity (GO:0008237), Molecular Function: zinc ion binding (GO:0008270) putative metallopeptidase YhfN	Zinc-metallo protease	Putative ZINC-METALLO PROTEASE	Peptidase, M48 family	metallo-peptidase, Clan M-, Family M48	similar to CaaX prenyl protease Ste24 (P47154) (Saccharomyces cerevisiae); go_component: integral to endoplasmic reticulum membrane [goid 0030176]; go_function: metalloendopeptidase activity [goid 0004222]; go_function: prenyl-dependent CAAX protease activity [goid 0008487]; go_process: conjugation with cellular fusion [goid 0000747]; go_process: peptide pheromone maturation [goid 0007323] CaaX prenyl protease (Ste24), putative	putative peptidase family M48 protein	CAAX family Zn-dependent protease	metalloprotease	Heat shock protein, Zn-dependent protease with chaperone function, family M48	curated by J. Mottram; go_component: membrane [goid 0016020]; go_function: metalloendopeptidase activity [goid 0004222]; go_function: prenyl-dependent CAAX protease activity [goid 0008487]; go_process: proteolysis and peptidolysis [goid 0006508] CAAX prenyl protease 1, putative	identified by match to protein family HMM PF01435 peptidase, M48 family	Ste24 endopeptidase	Peptidase M48, Ste24p	peptidase, M48 family	Ste24 endopeptidase	Putative FtsZ-like Zn-dependent protease	Peptidase M48, Ste24p	Peptidase M48, Ste24p	membrane-associated protease	
HELPY00378	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00379	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00380	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00381	Uncharacterized protein HP_0386	hypothetical protein	conserved hypothetical protein (O25148) Hypothetical protein HP0386/JHP0995 High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00382	Primosomal protein N'	primosomal replication factor Y (primosomal protein N')	Primosomal protein n`	PRIMOSOMAL PROTEIN N'	Primosomal protein N'	Putative primosomal protein N'	primosomal replication factor Y (primosomal protein N')	Primosomal protein N'	Primosomal protein N'	Putative priA family helicase	Primosomal protein N', superfamily II helicase	Primosomal protein N (Replication factor Y)- superfamily II helicase	Putative primosomal protein N'	Primosomal protein N'	Primosomal protein N'	Primosomal replication factor y	Primosomal protein N'	Primosomal protein N'	Primosomal protein n'	Primosomal protein N'	Primosomal protein N' (replication factor Y)	conserved gene primosomal protein N'	Primosomal protein N' (replication factor Y)	Primosomal protein N`	Primosomal protein N'	Primosomal protein N' (Replication factor Y)- superfamily II helicase	identified by similarity to SP:P94461; match to protein family HMM PF00271; match to protein family HMM TIGR00595 primosomal protein N'	Primosomal protein N'	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark primosomal protein N'	
HELPY00383	tRNA (cmo5U34)-methyltransferase	tRNA (cmo5U34)-methyltransferase	tRNA (cmo5U34)-methyltransferase	Residues 1 to 247 of 247 are 100 pct identical to residues 1 to 247 of a 247 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288307.1 orf, conserved hypothetical protein	tRNA (cmo5U34)-methyltransferase	tRNA (cmo5U34)-methyltransferase	methyltransferase domain protein	identified by match to protein family HMM TIGR00740 methyltransferase, putative	IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase putative SAM-dependent methyltransferases	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	tRNA (cmo5U34)-methyltransferase	Putative	tRNA (cmo5U34)-methyltransferase	methyltransferase	fold typical of S-adenosyl-L-methionine-dependent methyltransferases; Similar to: HI0319, YECO_HAEIN conserved hypothetical protein	SAM-dependent methyltransferases SmtA protein	tRNA (cmo5U34)-methyltransferase	SAM-dependent methyltransferase	tRNA (cmo5U34)-methyltransferase	identified by match to protein family HMM TIGR00740 putative methyltransferase	conserved hypothetical SAM-dependent methyltransferase	identified by match to protein family HMM TIGR00740 methyltransferase, putative	identified by match to protein family HMM TIGR00740 methyltransferase, putative	Proteobacterial methyltransferase	Code: QR; COG: COG0500 conserved hypothetical protein	methyltransferase	SAM-dependent methyltransferase	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; PubMedId : 11746687; Product type e : enzyme putative methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain	Code: QR; COG: COG0500 conserved hypothetical protein	
HELPY00384	Superoxide dismutase	superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Residues 1 to 193 of 193 are 100 pct identical to residues 1 to 193 of a 193 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288092.1 superoxide dismutase, iron	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	superoxide dismutase, iron	conserved gene superoxide dismutase	superoxide dismutase, iron	superoxide dismutase	identified by similarity to SP:P09157 superoxide dismutase, Fe	Superoxide dismutase	identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777 superoxide dismutase, Fe	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark iron superoxide dismutase	IPR001189: Manganese and iron superoxide dismutase superoxide dismutase, iron	similar to Salmonella typhi CT18 superoxide dismutase superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Putative superoxide dismutase	
HELPY00385	Probable thiol peroxidase	thiol peroxidase (superoxide-inducible protein 8)	Thiol peroxidase	Thiol peroxidase	Thiol peroxidase	Thiol peroxidase	Probable thiol peroxidase	Thiol peroxidase	Thiol peroxidase	CDS_ID OB2193 thioredoxin peroxidase	THIOL PEROXIDASE	similar to AE007053-1|AAK46254.1| percent identity: 55 in 165 aa putative thioredoxin peroxidase	Probable thiol peroxidase	Probable thiol peroxidase	Probable thiol peroxidase	Probable thiol peroxidase	Probable thiol peroxidase	Residues 1 to 168 of 168 are 100 pct identical to residues 1 to 168 of a 168 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287864.1 thiol peroxidase	Probable thiol peroxidase	Probable thiol peroxidase	Probable thiol peroxidase	Thiol peroxidase	Thiol peroxidase	identified by match to protein family HMM PF00578 thiol peroxidase, putative	Thiol peroxidase	thiol peroxidase	Probable thiol peroxidase	identified by similarity to SP:P37901; match to protein family HMM PF00578 thiol peroxidase	Putative thiolperoxidase	
HELPY00386	Purine-binding chemotaxis protein	Chemotaxis protein CheW	CDS_ID OB1579 chemotaxis protein	Chemotaxis signal transduction/oligomerization protein CheW1-1	Chemotaxis signal transduction protein CheW	Modulation of CheA activity in response to attractants	Chemotaxis signal transduction protein	Signal transduction chemotaxis protein	identified by similarity to SP:P39802; match to protein family HMM PF01584 purine-binding chemotaxis protein CheW	InterProMatches:IPR002545; modulation of CheA activity in response to attractants,Molecular Function: signal transducer activity (GO:0004871), Cellular Component: intracellular (GO:0005622), Biological Process: chemotaxis (GO:0006935), Biological Process: signal transduction (GO:0007165) CheW chemotaxis protein	Chemotaxis signal transduction response regulator CheW	Histidine kinase-MCP coupling protein	Purine-binding chemotaxis protein	Purine-binding chemotaxis protein CheW	Chemotaxis protein CheW	Chemotaxis protein CheW	identified by similarity to SP:P07365; match to protein family HMM PF01584 chemotaxis protein CheW	identified by similarity to SP:P07365; match to protein family HMM PF01584 chemotaxis protein CheW	identified by match to protein family HMM PF01584 chemotaxis protein cheW	CheW-like protein	CheW-like protein	identified by similarity to SP:P06110; match to protein family HMM PF01584 chemotaxis protein CheW	chemotaxis signal transduction coupling protein	Chemotaxis signal transduction protein, purine binding protein, CheW-like	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3510184, 12119290, 2068106; Product type r : regulator purine-binding chemotaxis protein	CheW protein	purine-binding chemotaxis protein CheW identified by match to protein family HMM PF01584	CheW protein	CheW protein	
HELPY00387	Histidine kinase	Chemotaxis protein	Probable chemotaxis protein CheA	identified by similarity to GP:3493635; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 chemotaxis protein CheA	chemotaxis protein histidine kinase CheA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark chemotaxis related protein	Chemotaxis protein histidine kinase CheA	Chemotaxis related protein	Histidine kinase	chemotaxis protein CheA	Chemotaxis histidine kinase CheA	contains HPT and CheW domains Chemotaxis-specific histidine kinase	chemotaxis related protein	identified by similarity to GP:3493635; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 chemotaxis protein CheA	identified by similarity to GB:AAC08064.1; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 chemotaxis sensor histidine kinase CheA	identified by similarity to GB:AAC08064.1; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 chemotaxis sensor histidine kinase CheA	CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt	CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt	CheA kinase	taxis sensor histidine kinase (EC 2.7.3.-)	identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 chemotaxis protein CheA	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3510184; Product type r : regulator chemotaxis protein cheA	CheA signal transduction histidine kinases	CheA signal transduction histidine kinases	CheA signal transduction histidine kinases	CheA Signal Transduction Histidine Kinases (STHK)	Chemotaxis protein histidine kinase and related kinase COG0643	CheA Signal Transduction Histidine Kinases (STHK)	chemotaxis protein CheA	
HELPY00388	Chemotaxis protein	Modulation of CheA activity in response to attractants	Lin0697 protein	identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 chemotaxis protein CheV	InterProMatches:IPR011006, IPR002545; modulation of CheA activity in response to attractants, Molecular Function: signal transducer activity (GO:0004871), Cellular Component: intracellular (GO:0005622), Biological Process: chemotaxis (GO:0006935), Biological Process: signal transduction (GO:0007165) CheV	Chemotaxis signal transduction protein CheV	Putative chemotaxis protein	identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 chemotaxis protein CheV	Chemotaxis protein CheV	identified by match to protein family HMM PF00072; match to protein family HMM PF01584 chemotaxis protein CheV	Response regulator receiver:CheW-like protein	response regulator receiver (CheY-like) modulated CheW protein	Response regulator receiver (CheY-like) modulated CheW protein	CheA-MCP interaction modulator	Chemotaxis signal transduction protein	chemotaxis protein CheV-like protein identified by match to protein family HMM PF00072; match to protein family HMM PF01584	chemotaxis protein CheV identified by match to protein family HMM PF00072; match to protein family HMM PF01584	chemotaxis protein CheV (P37599) Chemotaxis protein cheV High confidence in function and specificity	chemotaxis protein CheV identified by match to protein family HMM PF00072; match to protein family HMM PF01584	response regulator receiver modulated CheW protein PFAM: response regulator receiver; CheW domain protein KEGG: gsu:GSU0879 chemotaxis protein CheV	Two-component system chemotzxis response regulator	chemotaxis protein CheV identified by match to protein family HMM PF00072; match to protein family HMM PF01584	Putative CheW protein	putative CheW protein PFAM: response regulator receiver; CheW domain protein KEGG: vpa:VPA0746 chemotaxis protein CheV	Putative CheW protein	Putative CheW protein	Putative CheW protein	Chemotaxis protein CheV	Response regulator receiver modulated CheW protein	
HELPY00389	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Metallophosphoesterase	hypothetical protein	metallophosphoesterase	conserved hypothetical protein (P44046) UDP-23-diacylglucosamine hydrolase (EC 3.6.1.-) High confidence in function and specificity	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Metallophosphoesterase	Metallophosphoesterase	Metallophosphoesterase	Putative uncharacterized protein	Putative uncharacterized protein	Metallophosphoesterase	Metallophosphoesterase	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00390	UPF0001 protein HP_0395	hypothetical protein	hypothetical conserved protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved protein	PHOSPHATE REGULON SENSOR PROTEIN PHOR	Putative uncharacterized protein ylmE	FkuA	Putative uncharacterized protein	UPF0001 protein yggS	CDS_ID OB1479 hypothetical protein	similar to AL109663-13|CAB51989.1| percent identity: 39 in 231 aa conserved hypothetical protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Hypothetical cytosolic protein	Predicted enzyme with a TIM-barrel fold	Putative uncharacterized protein	BH2550 protein	UPF0001 protein BU549	SC4A10.13c, conserved hypothetical protein, len: 239 aa; unknown function, similar to many hypothetical proteins e.g. SW:YPT5_PSEAE (EMBL:M55524) Pseudomonas aeruginosa hypothetical protein (230 aa), fasta scores; opt: 464 z-score: 546.4 E(): 4.1e-23, 39.7% identity in 229 aa overlap. Contains Pfam match to entry PF01168 UPF0001, Uncharacterized protein family UPF0001 and PS01211 Uncharacterized protein family UPF0001 signature conserved hypothetical protein	Predicted enzyme with a TIM-barrel fold	Predicted enzyme with a TIM-barrel fold	Lin2137 protein	hypothetical protein	Putative uncharacterized protein	Residues 1 to 234 of 234 are 99 pct identical to residues 1 to 234 of a 234 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289523.1 orf, conserved hypothetical protein	
HELPY00391	Uncharacterized protein HP_0396	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	VDCC PROTEIN	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Carboxylyase-related protein	BH3930 protein	SCD69.10, putative decarboxylase, len: 485 aa; similar to SW:Y209_ARCFU (EMBL:AE001091) Archaeoglobus fulgidus hypothetical protein AF0209, 481 aa; fasta scores: opt: 1557 z-score: 1800.8 E(): 0; 48.6% identity in 484 aa overlap and to SW:P26615 (UBID_ECOLI) 3-Octaprenyl-4-hydroxybenzoate carboxy-lyase from Escherichia coli (497 aa) fasta scores; opt: 1293, Z-score: 1478.5, 40.162% identity (41.336% ungapped) in 493 aa overlap. Contains Pfam match to entry PF01977 UPF0096, Protein of unknown function. putative decarboxylase SCD69.10	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Uncharacterized protein RP821	Putative uncharacterized protein	Residues 1 to 497 of 497 are 98 pct identical to residues 1 to 497 of a 497 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290473.1 putative oxidoreductase	Uncharacterized protein CT_085	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Highly similar to 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases hypothetical protein	conserved gene oxidoreductase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Highly similar to 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases hypothetical protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase elated enzyme	identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative	3-polyprenyl-4-hydroxybenzoate decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD	putative oxidoreductase	
HELPY00392	Phosphoglycerate dehydrogenase	phosphoglycerate dehydrogenase	Putative D-3-phosphoglycerate dehydrogenase	D-3-PHOSPHOGLYCERATE DEHYDROGENASE	D-3-phosphoglycerate dehydrogenase	CDS_ID OB2626 phosphoglycerate dehydrogenase	similar to AL035569-27|CAB37591.1| percent identity: 51 in 526 aa putative D-3-phosphoglycerate dehydrogenase	phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase	Putative phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase	SC8D9.27, serA, D-3-phosphoglycerate dehydrogenase, len: 529 aa; member of a family including egs.  SW:SERA_MYCLE putative SerA, D-3-phosphoglycerate dehydrogenase from Mycobacterium leprae (528 aa) fasta scores; opt: 1889, z-score: 2032.0, E(): 0, (56.9% identity in 524 aa overlap) and SW:SERA_BACSU SerA, D-3-phosphoglycerate dehydrogenase from Bacillus subtilis (525 aa) fasta scores; opt: 1176, z-score: 1266.5, E(): 0, (39.7% identity in 529 aa overlap). Contains PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature, PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2 and Pfam match to entry PF00389 2-Hacid_DH, D-isomer specific 2-hydroxyacid dehydrogenases, score 256.90, E-value 7e-105. probable D-3-phosphoglycerate dehydrogenase	Phosphoglycerate dehydrogenase and related dehydrogenases	D-3-phosphoglycerate dehydrogenase	identified by similarity to EGAD:12051; match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; match to protein family HMM TIGR01327 D-3-phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase	identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; match to protein family HMM TIGR01327 D-3-phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase	identified by similarity to SP:P35136; match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; match to protein family HMM TIGR01327 D-3-phosphoglycerate dehydrogenase	SerA	D-3-phosphoglycerate dehydrogenase protein	D-3-phosphoglycerate dehydrogenase	Mb3020c, serA1, len: 528 aa. Equivalent to Rv2996c, len: 528 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 528 aa overlap). Probable serA1, D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), equivalent to SERA_MYCLE D-3-PHOSPHOGLYCERATE DEHYDROGENASE from Mycobacterium leprae (528 aa), FASTA scores: opt: 2974, E(): 1.9e-166, (89.6% identity in 528 aa overlap). Also highly similar to many e.g. Q9Z564 from Streptomyces coelicolor (529 aa), FASTA scores: opt: 1879, E(): 2.1e-102, (57.6% identity in 526 aa overlap); O29445|SERA_ARCFU from Archaeoglobus fulgidus (527 aa), FASTA scores: opt: 1252, E(): 9.6e-66, (41.3% identity in 530 aa overlap); P35136|SERA_BACSU from Bacillus subtilis (525 aa), FASTA scores: opt: 1172, E(): 4.5e-61, (37.9% identity in 528 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop), PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature, and PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. BELONGS TO THE D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASES FAMILY. Note that previously known as serA. PROBABLE D-3-PHOSPHOGLYCERATE DEHYDROGENASE SERA1 (PGDH)	InterProMatches:IPR006236; Molecular Function: phosphoglycerate dehydrogenase activity (GO:0004617), Biological Process: L-serine biosynthesis (GO:0006564) phosphoglycerate dehydrogenase SerA	D-3-phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase	D-3-phosphoglycerate dehydrogenase	
HELPY00393	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00394	30S ribosomal protein S1	Ribosomal protein S1	SSU ribosomal protein S1P	Ribosomal protein S1	30S ribosomal protein S1	Probable ribosomal protein S1	ribosomal protein S1	Cytidylate kinase/ribosomal protein S1	30S ribosomal protein S1	30S ribosomal protein S1	30S ribosomal protein S1	30S ribosomal protein S1	SC7H2.12c, rpsA, 30S ribosomal protein S1, len: 502aa; similar to many eg. SW:RS1_ECOLI rpsA, 30S ribosomal protein S1 from Escherichia coli (557 aa) fasta scores; opt: 1016, z-score: 1019.6, E(): 0, (39.8% identity in 452 aa overlap). Also similar to TR:O06147 (EMBL:Z95554) 30S ribosomal protein S1 from Mycobacterium tuberculosis (481 aa) fasta scores; opt: 2420, z-score: 2422.2, E(): 0, (79.1% identity in 492 aa overlap).  Contains four Pfam matches to entry PF00575 S1, S1 RNA binding domain. Also contains possible coiled-coil region around 400-410aa. 30S ribosomal protein S1	Ribosomal protein S1	30S ribosomal protein S1	30S ribosomal protein S1	30S ribosomal protein S1	Residues 1 to 557 of 557 are 100 pct identical to residues 1 to 557 of a 557 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286786.1 30S ribosomal subunit protein S1	30S ribosomal protein S1	30S ribosomal protein S1	Ribosomal protein S1:S1 RNA binding domain	RpsA protein	Probable 30s ribosomal subunit protein s1	30S ribosomal protein S1	30S ribosomal protein S1	conserved gene 30S ribosomal protein S1	30S ribosomal protein S1	identified by match to protein family HMM PF00575 ribosomal protein S1	identified by similarity to SP:P02349; match to protein family HMM PF00575; match to protein family HMM TIGR00717 ribosomal protein S1	
HELPY00395	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	hypothetical protein	hypothetical conserved protein	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	similar to AE006994-1|AAK45398.1| percent identity: 65 in 327 aa putative isoprenyl diphosphate biosynthesis protein IspH	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	penicillin tolerance protein (lytB) , control of stringent response	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	SCBAC20F6.01, lytB, len: >148 aa; highly similar to C-terminal region of SW:LYTB_ECOLI (EMBL:X54945) Escherichia coli LytB protein LytB or B0029, 316 aa; fasta scores: opt: 434 Z-score: 512.5 bits: 101.9 E(): 5.9e-21; 51.145% identity in 131 aa overlap. Contains Pfam match to entry PF02401 LYTB, LytB protein SCK7.31, hypothetical protein (fragment), len: >224 aa; similar to SW:LYTB_ECOLI (EMBL:AE000113) Escherichia coli regulator, control of stringent response; involved in penicillin tolerance LytB protein, 316 aa; fasta scores: opt: 781 z-score: 922.7 E(): 0; 53.2% identity in 216 aa overlap hypothetical protein	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Residues 1 to 312 of 312 are 99 pct identical to residues 5 to 316 of a 316 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285723.1 control of stringent response; involved in penicillin tolerance	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	
HELPY00396	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase)	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	CDS_ID OB1780 5-enolpyruvoylshikimate-3-phosphate synthase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase 1	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	conserved gene 3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	identified by similarity to EGAD:22982; match to protein family HMM PF00275; match to protein family HMM TIGR01356 3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	identified by similarity to SP:P20691; match to protein family HMM PF00275; match to protein family HMM TIGR01356 3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	InterProMatches:IPR001986 5-enolpyruvoylshikimate-3-phosphate synthase	
HELPY00397	Phenylalanyl-tRNA synthetase beta chain	phenylalanyl-tRNA synthetase	phenylalanyl-tRNA synthetase beta subunit	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	CDS_ID OB2130 phenylalanyl-tRNA synthetase beta subunit	Phenylalanyl-tRNA synthetase beta chain	similar to AE007032-2|AAK45957.1| percent identity: 50 in 835 aa putative phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	phenylalanine-tRNA ligase (EC 6.1.1.20) beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase, beta subunit	SCI35.16c, pheT, proabable phenylalanyl-tRNA synthetase beta chain, len: 840 aa; similar to many e.g.  SYFB_ECOLI phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (795 aa), fasta scores; opt: 988 z-score: 1290.9 E(): 0, 36.0% identity in 849 aa overlap. Contains PS00017 ATP/GTP-binding putative phenylalanyl-tRNA synthetase beta chain	
HELPY00398	Phenylalanyl-tRNA synthetase alpha chain	phenylalanyl-tRNA synthetase alpha chain	phenylalanyl-tRNA synthetase alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	CDS_ID OB2131 phenylalanyl-tRNA synthetase alpha subunit	PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN	similar to AL583922-1|CAC30352.1| percent identity: 61 in 348 aa putative phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	phenylalanyl-tRNA synthetase, alpha-subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	SCI35.17c, pheS, probable phenylalanyl-tRNA synthetase alpha chain, len: 373 aa; similar to many e.g.  SYFA_ECOLI phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (327 aa), fasta scores; opt: 682 z-score: 1248.8 E(): 0, 43.1% identity in 343 aa overlap. Contains PS00179 and PS00339 Aminoacyl-transfer RNA synthetases class-II signatures 1 and 2 putative phenylalanyl-tRNA synthetase alpha chain	
HELPY00399	Uncharacterized HIT-like protein HP_0404	HIT family protein	Histidine triad protein HIT	HIT-family hydrolase protein	Hit family protein	HIT-like protein hinT	CDS_ID OB1154; HIT protein cell-cycle regulation histidine triad protein	Putative uncharacterized protein pckI	Adenosine 5'-monophosphoramidase	HIT family hydrolase	Putative uncharacterized protein	Hit-like protein involved in cell-cycle regulation	Uncharacterized HIT-like protein BU357	Putative nucleotidyl hydrolase/transferase	Histidine triad protein HIT	SCC77.15c, possible Hit-family protein, len: 117 aa. Similar to many proteins carrying the HIT (histidine triad) family motif which is thought to mediate nucleotide binding, including: Oryctolagus cuniculus (Rabbit) SW:IPK1_RABIT(EMBL:Y11175) HinT protein (protein kinase C inhibitor 1) (125 aa), fasta scores opt: 338 z-score: 429.0 E(): 1.7e-16 47.4% identity in 114 aa overlap and Aquifex aeolicus SW:YHIT_AQUAE(EMBL:AE000675) hypothetical Hit-like protein AQ_141 (121 aa), fasta scores opt: 369 z-score: 467.0 E(): 1.3e-18 46.2% identity in 119 aa overlap. Contains a Pfam match to entry PF01230 HIT. putative Hit-family protein.	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	HIT-like protein	HIT family hydrolase	Uncharacterized HIT-like protein RP317	HIT family hydrolase	Residues 7 to 125 of 125 are 99 pct identical to residues 1 to 119 of a 119 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287237.1 orf, conserved hypothetical protein	Uncharacterized HIT-like protein CT_385	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	HIT (Histidine triad) family	YcfF protein	Hit-like	Similar to histidine triad-like protein YcfF of Escherichia coli	Similar to HIT( Histidine triad nucleotide-binding protein) family protein hypothetical protein	
HELPY00400	NifS-like protein	Putative aminotransferase	conserved hypothetical protein	aminotransferase, putative	Putative uncharacterized protein nifS_2	Putative AMINOTRANSFERASE	NifS-like protein	aminotransferase, class V superfamily identified by match to protein family HMM PF00266	Putative aminotransferase	aminotransferase, class V PFAM: aminotransferase, class V: (2.3e-18) KEGG: sil:SPO3178 hypothetical protein, ev=0.0, 70% identity	hypothetical conserved protein Similar to SMc00277 [Sinorhizobium meliloti] Similar to swissprot:Q92PN2 Putative location:bacterial cytoplasm Psort-Score: 0.2646	nifS-like protein	Aminotransferase, class V	Cysteine desulfurase	Selenocysteine lyase	putative aminotransferase identified by match to protein family HMM PF00266	Aminotransferase, class V	aminotransferase, class V PFAM: aminotransferase, class V KEGG: ret:RHE_PE00221 hypothetical protein	putative aminotransferase (Q9X191) Probable cysteine desulfurase (EC 4.4.1.-or 2.8.1.7) High confidence in function and specificity	Cysteine sulfinate desulfinase	aminotransferase, putative identified by match to protein family HMM PF00266	aminotransferase, putative	predicted protein	Aminotransferase, putative	putative selenocysteine lyase Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	Putative aminotransferase	Putative aminotransferase	Aminotransferase, putative	Aminotransferase, NifS-like protein	
HELPY00401	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00402	Biotin sulfoxide reductase	Residues 1 to 777 of 777 are 98 pct identical to residues 1 to 777 of a 777 aa protein BISC_ECOLI sp: P20099 biotin sulfoxide reductase (BDS reductase) (BSO reductase)	Putative S/N-oxide reductase	trimethylamine-N-oxide reductase	Biotin sulfoxide reductase	biotin sulfoxide reductase	Biotin sulfoxide reductase	dimethyl sulfoxide reductase	biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Molybdopterin guanine dinucleotide-containing S/N -oxide reductase	Biotin sulfoxide reductase	Molybdopterin oxidoreductase precursor	Putative uncharacterized protein	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase	Biotin sulfoxide reductase; putative signal peptide	
HELPY00403	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00404	GMP synthase	GMP synthetase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	similar to AX064671-1|CAC25575.1| percent identity: 90 in 523 aa GMP synthase	GMP synthetase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	SCD63.17, guaA, GMP synthase, len: 526 aa; highly similar to SW:GUAA_CORAM (EMBL:Y10499) Corynebacterium ammoniagenes GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) GuaA, 522 aa; fasta scores: opt: 2191 z-score: 2442.9 E(): 0; 65.7% identity in 528 aa overlap. Contains Pfam matches to entries PF00117 GATase, Glutamine amidotransferase class-I and PF00958 GMP_synt_C, GMP synthase C terminal domain and match to Prosite entry PS00442 Glutamine amidotransferases class-I active site GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthase	GMP synthetase	Probable GMP synthase	Residues 1 to 525 of 525 are 99 pct identical to residues 1 to 525 of a 525 aa protein from Escherichia coli O157:H7 ref: NP_311396.1 GMP synthetase	GMP synthase	
HELPY00405	Putative neuraminyllactose-binding hemagglutinin homolog	putative neuraminyllactose-binding hemagglutinin-like protein	probable neuraminyllactose-binding hemagglutinin (Q48261) Neuraminyllactose-binding hemagglutinin precursor (N-acetylneuraminyllactose-binding fibrillar hemagglutinin receptor-binding subunit) (NLBH) (Flagellar sheath adhesin), putative neuraminyllactose-binding hemagglutinin homolog (hpaA) High confidence in function and specificity	Putative uncharacterized protein	Putative neuraminyllactose-binding hemagglutinin- like protein	Flagellar sheath adhesin	


HELPY00980	IS200 insertion sequence from SARA17	IPR002686: transposase IS200-like transposase	similar to Salmonella typhi CT18 putative IS element transposase putative IS element transposase	Putative transposase, IS200-like	IS200-type transposase	Transposase IS200-like	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative transposase IS200-like	Code: L; COG: COG1943 putative transposase TnA	hypothetical protein similarity to COG1943 Predicted transposase	transposase	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: ecc:c3803 putative transposase	Transposase IS200-family protein	ISHa1942 transposase A homolog IS606-like IS element Specificity unclear	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: sec:SCV07 transposase	Transposase, IS200 family	Probable transposase	ISHa1942 transposase A homolog	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: sma:SAV821 putative IS200-like transposase	pseudo	Transposase IS200-family protein	Transposase, IS605 family	IS200 transposase orfA	Putative uncharacterized protein	Transposase	Putative IS element transposase	Transposase	Transposase family protein	Transposase IS200-family protein	Transposase, IS200, part of IS605 with following ORF	
HELPY00409	Uncharacterized mscS family protein HP_0415	Putative uncharacterized protein	Hypothetical UPF0003 protein JHP0969	Similar to Q8A7A2 Putative membrane protein from Bacteroides thetaiotaomicron (391 aa). FASTA: opt: 908 Z-score: 1062.3 E(): 2.6e-51 Smith-Waterman score: 908; 37.637 identity in 364 aa overlap. ORF ftt0992 conserved hypothetical membrane protein	MscS Mechanosensitive ion channel	conserved hypothetical integral membrane protein	MscS Mechanosensitive ion channel	conserved hypothetical membrane protein Similar to Q8A7A2 Putative membrane protein from Bacteroides thetaiotaomicron (391 aa). FASTA: opt: 908 Z-score: 1062.3 E(): 2.6e-51 Smith-Waterman score: 908; 37.637 identity in 364 aa overlap. ORF ftt0992	mechanosensitive ion channel family protein identified by match to protein family HMM PF00924	hypothetical protein similar to HP0415 High confidence in function and specificity	mechanosensitive ion channel family protein identified by match to protein family HMM PF00924	small conductance mechanosensitive ion channel (MscS) family protein	Mechanosensitive ion channel family protein	Putative membrane transport protein	Mechanosensitive ion channel family protein	Putative integral membrane protein	Mechanosensitive ion channel family protein	Mechanosensitive ion channel family protein	Mechanosensitive ion channel family protein	Mechanosensitive ion channel family protein	Small conductance mechanosensitive ion channel (MscS) family protein	Putative uncharacterized protein	MscS Mechanosensitive ion channel	Small-conductance mechanosensitive channel	Transporter, small conductance mechanosensitive ion channel (MscS) family	Putative uncharacterized protein	Conserved hypothetical integral membrane protein, mechanosensitive ion channel family	Mechanosensitive ion channel family protein	Putative uncharacterized protein	
HELPY00410	Cyclopropane fatty acid synthase	CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE	Cyclopropane-fatty-acyl-phospholipid synthase	Cyclopropane fatty acid synthase	Residues 1 to 382 of 382 are 99 pct identical to residues 1 to 382 of a 382 aa protein from Escherichia coli K12 ref: NP_416178.1 cyclopropane fatty acyl phospholipid synthase	Cyclopropane-fatty-acyl-phospholipid synthase	Cyclopropane-fatty-acyl-phospholipid synthase	cyclopropane-fatty-acyl-phospholipid synthase	identified by match to protein family HMM PF02353 cyclopropane-fatty-acyl-phospholipid synthase, putative	Cyclopropane-fatty-acyl-phospholipid synthase protein	cyclopropane-fatty-acyl-phospholipid synthase	IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase cyclopropane fatty acyl phospholipid synthase	similar to Salmonella typhi CT18 cyclopropane-fatty-acyl-phospholipid synthase cyclopropane-fatty-acyl-phospholipid synthase	similar to BR0451, cyclopropane-fatty-acyl-phospholipid synthase Cfa, cyclopropane-fatty-acyl-phospholipid synthase	Putative uncharacterized protein gbs1792	CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE	identified by match to PFAM protein family HMM PF02353 cyclopropane-fatty-acyl-phospholipid synthase	Cyclopropane-fatty-acyl-phospholipid synthase	Cyclopropane-fatty-acyl-phospholipid synthase	methyltransferases; COG2230 cyclopropane fatty acid synthase	cyclopropane-fatty-acyl-phospholipid synthase	Cyclopropane fatty acyl phospholipid synthase	Cyclopropane-fatty-acyl-phospholipid synthase	cyclopropane-fatty-acyl-phospholipid synthase	identified by match to protein family HMM PF02353 cyclopropane-fatty-acyl-phospholipid synthase	identified by match to protein family HMM PF02353 cyclopropane-fatty-acyl-phospholipid synthase	cyclopropane-fatty-acyl-phospholipid synthase	Code: M; COG: COG2230 cyclopropane fatty acyl phospholipid synthase	SAM (and some other nucleotide) binding motif:Generic methyltransferase:Cyclopropane-fatty-acyl-phospholipid synthase	
HELPY00411	Methionyl-tRNA synthetase	Putative methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Putative methionyl-tRNA synthetase	CDS_ID OB0046 methionine-tRNA ligase	Methionyl-tRNA synthetase	methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	SCH63.39, probable methionyl tRNA synthetase, len: 538 aa; similar to SW:SYM_BACST (EMBL:X57925) Bacillus stearothermophilus methionyl tRNA synthetase (EC 6.1.1.10) MetG, 649 aa; fasta scores: opt: 1599 z-score: 1851.5 E(): 0; 46.7% identity in 525 aa overlap. Contains Pfam match to entry PF00133 tRNA-synt_1, tRNA synthetases class I (I, L, M and V) putative methionyl tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	MetS/MetG	methionyl-tRNA synthetase	Methionyl-tRNA synthetase	identified by match to protein family HMM PF00133; match to protein family HMM PF01588; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399 methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Protein secretion chaperonin CsaA Methionyl-tRNA synthetase	methionyl-tRNA synthetase	
HELPY00412	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Ferrochelatase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00413	tRNA (mo5U34)-methyltransferase	tRNA (mo5U34)-methyltransferase	tRNA (mo5U34)-methyltransferase	Residues 1 to 323 of 323 are 98 pct identical to residues 1 to 323 of a 323 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288308.1 putative enzyme	tRNA (mo5U34)-methyltransferase	tRNA (mo5U34)-methyltransferase	methyltransferase, putative	putative enzyme	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	tRNA (mo5U34)-methyltransferase	Putative	tRNA (mo5U34)-methyltransferase	tRNA (mo5U34)-methyltransferase	methyltransferase	Similar to: HI1351, YECP_HAEIN conserved hypothetical protein	SAM-dependent methyltransferases SmtA protein	tRNA (mo5U34)-methyltransferase	SAM-dependent methyltransferase	tRNA (mo5U34)-methyltransferase	identified by match to protein family HMM PF08003; match to protein family HMM TIGR00452 putative methyltransferase	conserved hypothetical protein	identified by match to protein family HMM PF08003; match to protein family HMM TIGR00452 methyltransferase, putative	identified by match to protein family HMM PF08003; match to protein family HMM TIGR00452 methyltransferase, putative	Methyltransferase, putative	Code: QR; COG: COG0500 putative enzyme	SAM-dependent methyltransferase	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain	Code: QR; COG: COG0500 putative enzyme	Methyltransferase, putative	
HELPY00414	Putative uncharacterized protein	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein High confidence in function and specificity	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Thioesterase family protein	Putative uncharacterized protein	Thioesterase superfamily protein	Putative uncharacterized protein	Thioesterase superfamily	Putative uncharacterized protein	Nter region of initiation factor eif-2b alpha subunit 1 from aquifex aeolicus	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00415	Type 1 capsular polysaccharide biosynthesis protein J	Glycosyl transferase, group 1 family protein	Putative uncharacterized protein	Glycosyltransferase	Alpha-D-mannose-alpha(1-6)phosphatidyl myo- inositol monomannoside transferase	Glycosyltransferase	Glycosyl transferase	similar to glycosyl transferase hypothetical protein	conserved gene glycosyltransferase	Glycosyltransferase	sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein	InterProMatches:IPR001296; Biological Process: biosynthesis (GO:0009058) putative sugar transferase, Glycosyl Transferase Family 4	glycosyltransferase	Glycosyltransferase	Lipopolysaccharide biosynthesis protein	Putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN	Lipopolysaccharide biosynthesis-related protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative glycosyl transferase	Probable hexosyltransferase Conserved Hypothetical protein	Similar to Methanosarcina mazei glycosyltransferase mm1142 SWALL:AAM30838 (EMBL:AE013343) (379 aa) fasta scores: E(): 3.6e-24, 29.59% id in 392 aa, and to Arabidopsis thaliana sulfolipid synthase Sqd2 SWALL:Q8S4F6 (EMBL:AF454354) (510 aa) fasta scores: E(): 2.8e-11, 27.91% id in 283 aa putative glycosyltransferase	predicted glycosyltransferase	Glycosyl transferase, group 1	glucosyltransferase	identified by match to protein family HMM PF00534 glycosyl transferase, group 1 family	Putative glycosyl transferase, group 1	Glycosyltransferase	Glycosyltransferase COG0438	hexosyltransferase	type 1 capsular polysaccharide biosynthesis protein J	
HELPY00416	Arginine decarboxylase	Biosynthetic arginine decarboxylase	Biosynthetic arginine decarboxylase	Biosynthetic arginine decarboxylase	Residues 5 to 662 of 668 are 99 pct identical to residues 1 to 658 of a 658 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289510.1 biosynthetic arginine decarboxylase	Biosynthetic arginine decarboxylase	Biosynthetic arginine decarboxylase	similar to biosynthetic arginine decarboxylase hypothetical protein	conserved gene biosynthetic arginine decarboxylase	similar to biosynthetic arginine decarboxylase hypothetical protein	arginine decarboxylase	identified by similarity to SP:P21170 arginine decarboxylase	Biosynthetic arginine decarboxylase	Biosynthetic arginine decarboxylase	Biosynthetic arginine decarboxylase	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01273 arginine decarboxylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark biosynthetic arginine decarboxylase	Arginine decarboxylase	IPR000183: Orn/DAP/Arg decarboxylase 2; IPR002985: Arginine decarboxylase arginine decarboxylase	similar to Salmonella typhi CT18 biosynthetic arginine decarboxylase biosynthetic arginine decarboxylase	Arginine decarboxylase	Biosynthetic arginine decarboxylase	Arginine decarboxylase	Arginine decarboxylase	Biosynthetic arginine decarboxylase	Orn/DAP/Arg decarboxylases family 2:Arginine decarboxylase	Arginine decarboxylase	biosynthetic arginine decarboxylase	Similar to Escherichia coli biosynthetic arginine decarboxylase SpeA or B2938 SWALL:SPEA_ECOLI (SWALL:P21170) (658 aa) fasta scores: E(): 1.7e-101, 45.15% id in 629 aa, and to Bacteroides thetaiotaomicron putative arginine decarboxylase BT3394 SWALL:AAO78500 (EMBL:AE016940) (630 aa) fasta scores: E(): 0, 95.39% id in 630 aa, and to Synechococcus elongatus arginine decarboxylase tll1807 SWALL:Q8DHY6 (EMBL:AP005375) (637 aa) fasta scores: E(): 3.1e-114, 46.09% id in 627 aa putative arginine decarboxylase	
HELPY01381	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01380	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY01378	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	SC6G9.04c, hypothetical protein, len: 565 aa; similar to TR:O34810 (EMBL:AE000641) Helicobacter pylori hypothetical protein (578 aa), fasta scores; opt: 391 z-score: 464.1 E(): 1.6e-18, 23.6% identity in 525 aa overlap and to several other hypothetical proteins from the same organism, with the highest similarity toward the N-terminus. The coding sequence has unusually low %G+C content hypothetical protein	Hypothetical protein	hypothetical protein	similar to unknown protein	Putative uncharacterized protein	Protein of unknown function DUF262 family identified by match to protein family HMM PF03235; match to protein family HMM PF07510	conserved hypothetical protein identified by similarity to GB:BAD77579.1; match to protein family HMM PF03235; match to protein family HMM PF07510	protein of unknown function DUF262	Hypothetical protein	conserved hypothetical protein fragment 2 Region start changed from 550041 to 549678 (363 bases)	protein of unknown function DUF262 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF KEGG: rpd:RPD_3945 protein of unknown function DUF262	conserved hypothetical protein identified by similarity to GB:BAD01926.1; match to protein family HMM PF03235; match to protein family HMM PF07510	protein of unknown function DUF262 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF KEGG: eca:ECA3659 hypothetical protein	Hypothetical protein	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	conserved hypothetical protein Code: S; COG: COG1479	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01377	Putative uncharacterized protein	
HELPY01377	Putative uncharacterized protein	



HELPY00418	Phage/colicin/tellurite resistance cluster terY protein	von Willebrand factor type A	Phage/colicin/tellurite resistance cluster terY protein	Phage/colicin/tellurite resistance cluster Y protein	Putative uncharacterized protein	Phage/colicin/tellurite resistance cluster protein TerY	von Willebrand factor type A	

HELPY00421	Protein phosphatase 2C homolog	Putative uncharacterized protein	Protein phosphatase 2 C-like protein	Serine/threonine phosphatase 2C-like protein	
HELPY00422	Protein kinase C-like protein	Serine/threonine protein kinase	Protein kinase C-like protein	




HELPY01502	IS605 transposase	IS200-type transposase	identified by match to protein family HMM PF01797 ISChy9, transposase orfA	Transposase IS200-like	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy putative transposase	Transposase IS200-like	IS605 family transposase orfA identified by match to protein family HMM PF01797	ISSoc10, orfA transposase identified by similarity to PIR:AI2478; match to protein family HMM PF01797	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: tfu:Tfu_1323 transposase-related protein	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: hma:rrnAC0815 probable transposase	transposase	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: mva:Mvan_1583 transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	Transposase	Putative uncharacterized protein	Transposase IS200-like protein	Transposase	Transposase IS200-family protein	Transposase IS200	Transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	
HELPY00427	Putative uncharacterized protein	Putative uncharacterized protein	Competence protein	

HELPY00428	DNA topoisomerase I	DNA topoisomerase	DNA topoisomerase III	identified by similarity to SP:P14294; match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056 DNA topoisomerase III	DNA topoisomerase III	transfer complex protein TraI (DNA topoisomerase III) identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056	DNA topoisomerase III	transcript_id=ENSGACT00000005029	DNA topoisomerase III	DNA topoisomerase III KEGG: son:SO3061 DNA topoisomerase III TIGRFAM: DNA topoisomerase III PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein	DNA topoisomerase I identified by match to protein family HMM PF01131; match to protein family HMM PF01751	DNA topoisomerase	DNA topoisomerase III	DNA topoisomerase III	DNA topoisomerase	KEGG: bam:Bamb_6614 DNA topoisomerase III TIGRFAM: DNA topoisomerase III PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein DNA topoisomerase III	DNA topoisomerase III	DNA topoisomerase	DNA topoisomerase	DNA topoisomerase I	transcript_id=ENSTTRT00000007606	DNA topoisomerase type IA central domain protein	Topoisomerase	DNA topoisomerase III	DNA topoisomerase I, putative	putative DNA topoisomerase	DNA topoisomerase I	DNA topoisomerase type IA central domain protein	
HELPY00429	VirB4 homolog	Legionella vir homologue protein	conserved gene LvhB4	Type IV secretion/conjugal transfer ATPase, VirB4 family	VirB4	Type IV secretory pathway VirB4 components-like protein	VirB4 identified by match to protein family HMM PF03135	VirB4	Type IV secretory pathway VirB4 components-like protein	VirB4	Type IV secretion/conjugal transfer ATPase, VirB4 family protein	VblB4 protein VirB4-like protein, homologous to VirB4 of Bartonella henselae [KO:K03199], component of type IV secretion system,InterPro; CagE TrbE VirB family component of type IV transporter system hypothetical protein	Cmgb3/4	CagE TrbE VirB component of type IV transporter system	DNA transfer protein	Type IV secretion/conjugal transfer ATPase, VirB4 family	
HELPY00430	Putative uncharacterized protein	Putative uncharacterized protein	



HELPY00434	Putative uncharacterized protein	Putative uncharacterized protein	




HELPY00440	Putative uncharacterized protein	pseudo	
HELPY00441	Putative uncharacterized protein	
HELPY00442	Putative uncharacterized protein	







HELPY00447	VirB4 homolog	Similar to rp||virB4 rc||virB4 rp||virB4; Ortholog to ERGA_CDS_08350 VirB4 protein	CagE, TrbE, VirB family component of typeIV transporter system	type IV secretion system protein VirB4 identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135	Conjugal transfer protein TrbE	TraE like protein	Type IV secretory pathway VirB4 components-like protein	Type IV secretion system protein VirB4, putative	VirB4 type IV secretion ATPase	

HELPY00450	Type I restriction enzyme S protein	Restriction-modification enzyme subunit s3a	Type Ic restriction-modification system, HsdS subunit	Best Blastp Hit: gb|AAG22014.1|AF288037_3 (AF288037) putative HsdS [Streptococcus thermophilus] COG0732 Restriction endonuclease S subunits hypothetical protein	Restriction endonuclease S subunits-like	restriction modification system DNA specificity domain PFAM: restriction modification system DNA specificity domain KEGG: ava:Ava_3499 restriction modification system DNA specificity domain	Restriction modification system DNA specificity subunit	Restriction endonuclease S subunits-like	Putative HsdS	HsdS identified by match to protein family HMM PF01420	Putative HsdS	Putative type I restriction-modification system, S subunit	Restriction modification system DNA specificity domain	Putative type I restriction-modification system, S subunit	Type I site-specific restriction-modification system, S (Specificity) subunit	Restriction modification system DNA specificity domain	Type I R/M system specificity subunit	Type I restriction-modification system, specificity subunit	Putative uncharacterized protein	Restriction modification system DNA specificity domain protein	Type I restriction-modification system, specificity protein	Type I restriction-modification system, specificity protein	Putative type-1 restriction enzyme MjaXP specificity protein	Restriction modification system DNA specificity domain protein	Type I restriction-modification system, specificity protein	
HELPY00451	Type I restriction enzyme M protein	Type I restriction-modification system, M subunit	Best Blastp Hit: gb|AAG22013.1|AF288037_2 (AF288037) putative HsdM [Streptococcus thermophilus] COG0286 Type I restriction-modification system hypothetical protein	type I restriction enzyme M protein	type I restriction enzyme M protein (Q47163) Type I restriction enzyme EcoprrI M protein (EC 2.1.1.72) (M.EcoprrI) High confidence in function and specificity	Type I restriction-modification system, M subunit	N-6 DNA methylase	N-6 DNA methylase	N-6 DNA methylase	Type I restriction-modification system, M subunit	conserved hypothetical protein Code: V; COG: COG0286	N-6 DNA methylase	N-6 DNA methylase	N-6 DNA methylase	Type I restriction enzyme M protein	Putative type I site-specific deoxyribonuclease	Putative uncharacterized protein	N-6 DNA methylase	Type I restriction enzyme M protein	pseudo	pseudo	Type I restriction enzyme m protein	Type I R-M system M protein	Type I restriction enzyme M protein	Putative uncharacterized protein	Site-specific DNA-methyltransferase (adenine-specific) PFAM: N-6 DNA methylase; putative RNA methylase; KEGG: glo:Glov_1415 N-6 DNA methylase	type i restriction enzyme m subunit	pseudo	
HELPY00452	Type I restriction enzyme R protein	type I site-specific deoxyribonuclease, HsdR family	type I restriction enzyme R protein	type I site-specific deoxyribonuclease, HsdR family	Putative HsdR	Hypothetical protein	Type I restriction enzyme, R subunit	Putative uncharacterized protein	Putative uncharacterized protein	putative type I restriction enzyme Code: V; COG: COG0610	Putative uncharacterized protein	Putative uncharacterized protein	Type I restriction enzyme R protein	Putative type I restriction enzyme	Putative uncharacterized protein	Type I restriction enzyme R protein	Type I restriction-modification system, restriction protein	Type I restriction-modification system, restriction protein	pseudo	Putative type I restriction enzyme	Type I restriction-modification system, restriction protein	Type I site-specific deoxyribonuclease, HsdR family	
HELPY00453	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Maf-1	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00454	Putative uncharacterized protein	Putative	Heat shock protein DnaJ-like	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00455	Conserved hypothetical integral membrane protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Integral membrane protein	
HELPY00456	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00457	Putative uncharacterized protein	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00458	Oligoendopeptidase F	Oligoendopeptidase F	OLIGOENDOPEPTIDASE F	Oligoendopeptidase f	oligoendopeptidase F	Putative oligoendopeptidase F	Oligoendopeptidase F	identified by match to protein family HMM PF01432 oligoendopeptidase F	Oligoendopeptidase F	identified by similarity to SP:P94876; match to protein family HMM PF01432; match to protein family HMM TIGR00181 oligoendopeptidase F	Oligoendopeptidase F protein	Oligoendopeptidase F	Oligoendopeptidase PepF	similar to BRA0081, oligoendopeptidase F PepF, oligoendopeptidase F	OLIGOPEPTIDASE	Oligoendopeptidase F	peptidase M3B, oligoendopeptidase-related clade 3	Peptidase M3:Neutral zinc metallopeptidases, zinc-binding region	thimet oligopeptidase	peptidase M3B family, nonpeptidase-like protein	Peptidase M3B, oligoendopeptidase-related clade 3	oligoendopeptidase F identified by match to protein family HMM PF01432	peptidase M3B family, nonpeptidase-like protein	Peptidase M3B, oligoendopeptidase-related clade 3	putative peptidase similarity:fasta; with=UniProt:P70922_BACLI (EMBL:BLD209); Bacillus licheniformis.; Pz-peptidase.; length=628; id 26.599; 594 aa overlap; query 31-614; subject 41-621 similarity:fasta; with=UniProt:Q8U9G3_AGRT5 (EMBL:AE009307); Agrobacterium tumefaciens (strain C58/ATCC 33970).; pepF; Oligoendopeptidase F.; length=616; id 81.656; 616 aa overlap; query 1-616; subject 1-613	Peptidase M3B, oligoendopeptidase-related clade 3	Peptidase M3B, oligoendopeptidase-related clade 3 TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 3: (1.2e-230) PFAM: peptidase M3A and M3B, thimet/oligopeptidase F: (5.1e-32) Oligopeptidase F: (3.2e-20) KEGG: sil:SPO1413 oligoendopeptidase F, ev=0.0, 86% identity	Peptidase M3B, oligoendopeptidase-related clade 3	oligoendopeptidase F protein similar to pepF (SMc04012) [Sinorhizobium meliloti] and AGR_L_2140p [Agrobacterium tumefaciens] Similar to swissprot:Q92M57 Putative location:bacterial cytoplasm Psort-Score: 0.2061; go_function: hydrolase activity [goid 0016787]; go_function: metallopeptidase activity [goid 0008237]; go_function: metalloendopeptidase activity [goid 0004222]; go_process: proteolysis and peptidolysis [goid 0006508]	
HELPY00459	Glutathione-regulated potassium-efflux system protein	Glutathione-regulated potassium-efflux system protein KefB	GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN	Sodium/hydrogen exchanger family protein	Sodium/hydrogen exchanger	potassium-efflux system protein, putative identified by match to protein family HMM PF00999; match to protein family HMM PF02254	Sodium/hydrogen exchanger	glutathione-regulated potassium-efflux system protein KefC, putative	glutathione-regulated potassium-efflux system protein KefC, putative	glutathione-regulated potassium-efflux system protein	Na+/H+ antiporter	sodium/hydrogen exchanger PFAM: TrkA-N domain protein; sodium/hydrogen exchanger KEGG: plt:Plut_0668 glutathione-regulated potassium-efflux system protein KefC, putative	sodium/hydrogen exchanger family protein identified by match to protein family HMM PF00999; match to protein family HMM PF02254	glutathione-regulated potassium-efflux system protein (Q8XA20) Glutathione-regulated potassium-efflux system protein kefC (K(+)/H(+) antiporter) High confidence in function and specificity	putative Na(+)/H(+) antiporter	CPA2 family monovalent cation:proton (H+) antiporter-2	sodium/hydrogen exchanger family protein identified by match to protein family HMM PF00999; match to protein family HMM PF02254	Sodium/hydrogen exchanger family protein	CPA2 family transporter: potassium ion efflux	sodium/hydrogen exchanger PFAM: TrkA-N domain protein; sodium/hydrogen exchanger KEGG: pat:Patl_2284 sodium/hydrogen exchanger	Monovalent cation:proton antiporter-2 (CPA2) family	Glutathione-regulated potassium-efflux system protein	pH regulator	Glutathione-regulated potassium-efflux system protein	Sodium/hydrogen exchanger	Sodium/hydrogen exchanger	Potassium efflux system protein	PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger KEGG: slo:Shew_2617 potassium efflux system protein sodium/hydrogen exchanger	Transporter, monovalent cation:proton antiporter- 2 (CPA2) family	
HELPY00460	Outer membrane protein	outer membrane protein HorE	outer membrane protein 17 hypothetical protein	Outer membrane protein	Outer membrane protein	Outer membrane protein HorE	
HELPY00461	Molybdenum ABC transporter, periplasmic molybdate -binding protein	identified by similarity to SP:Q08383; match to protein family HMM PF01547; match to protein family HMM TIGR01256 molybdenum ABC transporter, periplasmic molybdenum-binding protein	Molybdenum ABC transporter molybdate-binding protein	Molybdenum-binding periplasmic protein ModA	Molybdate ABC transporter, periplasmic-binding protein	Molybdate ABC transporter, periplasmic molybdate- binding protein	Molybdate ABC transporter, periplasmic molybdate-binding protein	identified by similarity to SP:P37734; match to protein family HMM TIGR01256 molybdenum ABC transporter, periplasmic molybdate-binding protein	ABC-type molybdate transport system, periplasmic component	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 molybdenum ABC transporter, periplasmic molybdate-binding protein	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 molybdenum ABC transporter, periplasmic molybdate-binding protein	Molybdenum ABC transporter, periplasmic binding protein	Molybdenum ABC transporter, periplasmic binding protein	ABC-type transport system, periplasmic component	molybdenum ABC transporter, periplasmic binding protein	molybdenum ABC transporter, periplasmic molybdate-binding protein	molybdenum ABC transporter, periplasmic molybdate-binding protein	Molybdenum ABC transporter, periplasmic binding protein	Molybdenum ABC transporter, periplasmic binding protein	molybdate ABC transporter, periplasmic molybdate-binding protein TIGRFAMsMatches:TIGR01256	molybdenum ABC transporter, periplasmic molybdate-binding protein	molybdenum ABC transporter, periplasmic molybdate-binding protein	Molybdenum ABC transporter, periplasmic molybdate -binding protein precursor	Molybdate ABC transporter periplasmic binding protein	molybdenum ABC transporter ModA	molybdenum ABC transporter, periplasmic molybdate-binding protein	molybdenum ABC transporter, periplasmic molybdate-binding protein	molybdenum ABC transporter, periplasmic molybdate-binding protein	Molybdenum ABC transporter, periplasmic molybdate -binding protein precursor	
HELPY00462	Molybdenum ABC transporter, permease protein	Molybdate transport system permease protein	identified by similarity to SP:P37731; match to protein family HMM PF00528 molybdenum ABC transporter, permease protein	Molybdenum ABC transporter, permease protein	Molybdenum ABC transporter permease component ModB	Putative uncharacterized protein gbs1025	Molybdate ABC transporter, permease	identified by match to PFAM protein family HMM PF00528 phosphate ABC transporter, permease protein PstA, putative	Molybdenum ABC transporter, permease protein	Putative ABC transporter membrane-spanning permease - sugar transport	Molybdate ABC transporter, permease protein	Molybdenum transport system permease	identified by similarity to SP:P37731; match to protein family HMM PF00528; match to protein family HMM TIGR02141 molybdenum ABC transporter, permease protein	ABC-type molybdate transport system, permease component	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 molybdate ABC transporter, permease protein	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 molybdate ABC transporter, permease protein	Molybdate ABC transporter, permease protein	Binding-protein-dependent transport systems inner membrane component	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 phosphate ABC transporter, permease protein PtsA	molybdate ABC transporter, permease protein	molybdate ABC transporter, permease protein	Molybdate ABC transporter, permease protein	Molybdate ABC transporter, permease protein	Molybdate ABC transporter, permease protein	Molybdate ABC transporter, permease protein	molybdate ABC transporter, permease protein TIGRFAMsMatches:TIGR02141	Molybdate ABC transporter, permease protein	Molybdate ABC transporter, inner membrane subunit precursor	Molybdate ABC transporter permease protein	
HELPY00463	Molybdenum ABC transporter, ATP-binding protein	molybdenum ABC transporter ModD	Molybdenum ABC transporter ModD	Molybdenum ABCtransporter ModD	Sulfate ABC transporter, ATPase subunit	Molybdenum ABC transporter ModD	
HELPY00464	Glutamyl-tRNA synthetase 1	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase 1	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	similar to AE000729-8|AAC07230.1| percent identity: 34 in 290 aa putative glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase 1	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase 2	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Residues 1 to 471 of 471 are 99 pct identical to residues 1 to 471 of a 471 aa protein from Escherichia coli K12 ref: NP_416899.1 glutamate tRNA synthetase, catalytic subunit	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	

HELPY00466	Adenine specific DNA methyltransferase	type II adenine specific methyltransferase	hypothetical protein similarity to COG0827 Adenine-specific DNA methylase(Evalue: 2E-48)	Type II adenine specific methyltransferase	Type II adenine specific methyltransferase	Putative uncharacterized protein	N-6 DNA methylase	Type II R-M system methyltransferase	
HELPY00467	Putative uncharacterized protein	DD-heptosyltransferase	conserved hypothetical protein Function unclear	DD-heptosyl transferase	DD-heptosyltransferase	
HELPY00468	GTP-binding protein TypA/BipA homolog	GTP-binding protein	GTP-binding elongation factor EF-G	Putative GTP-binding elongation factor	Putative GTP-binding protein TypA/BipA	GTP-binding protein TypA	GTPase	GTP-BINDING PROTEIN TYPA/BIPA	Putative GTP-binding protein	BipA	Putative GTP-binding elongation factor	GTP-binding protein typA/bipA	CDS_ID OB0586; translation GTP-binding elongation factor	similar to AL596043-7|CAC44318.1| percent identity: 60 in 632 aa putative GTP-binding protein	Putative Elongation factor G (EF-G), fusA	GTP-binding protein TypA	GTP-binding protein typA/bipA-like protein	GTP-binding protein	Conserved GTPase	TYPA/BIPA type GTPase	GTP-binding protein elongation factor	GTP-binding protein TypA/BipA	GTP-binding protein TypA/BipA homolog	GTP-binding membrane protein, elongation factor	SCBAC31E11.07, possible GTP-binding protein, len: 635 aa; similar to SW:TYPA_ECOLI (EMBL:L19201) Escherichia coli GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A) TypA or BipA or B3871, 591 aa; fasta scores: opt: 915 Z-score: 968.6 bits: 189.3 E(): 2.5e-46; 48.039% identity in 612 aa overlap. Contains Pfam match to entry PF00009 GTP_EFTU, Elongation factor Tu family and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00301 GTP-binding elongation factors signature putative GTP-binding protein	Predicted membrane GTPase involved in stress response	GTP-binding protein TypA/BipA-like protein	GTP-binding TypA-like protein	Putative uncharacterized protein RP263	
HELPY00469	Adenine specific DNA methyltransferase	type II adenine specific DNA methyltransferase	site-specific TYPE II DNA methyltransferase (P29347) Modification methylase StsI (EC 2.1.1.72) (Adenine-specific methyltransferase StsI) (M.StsI) High confidence in function and specificity	Type II adenine specific DNA methyltransferase	Type II adenine specific DNA methyltransferase	

HELPY00470	Putative uncharacterized protein	type II restriction endonuclease	Type II restriction endonuclease	

HELPY00471	Putative uncharacterized protein	conserved hypothetical protein KEGG: hpy:HP0484 hypothetical protein	Putative uncharacterized protein	
HELPY00472	Catalase-like protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark catalase	Putative uncharacterized protein	Catalase	Putative	Catalase, putative	Catalase-related protein	catalase	identified by match to protein family HMM PF00199 putative catalase	identified by match to protein family HMM PF00199 catalase	Catalase, N-terminal	Catalase-like	catalase	Catalase-like	catalase identified by match to protein family HMM PF00199	Catalase domain protein precursor	catalase like protein	Catalase-like protein	catalase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Catalase-like protein	Catalase domain protein PFAM: Catalase domain protein KEGG: bur:Bcep18194_A3196 catalase-like	Catalase domain protein PFAM: Catalase domain protein KEGG: bur:Bcep18194_C7513 catalase-like	catalase identified by match to protein family HMM PF00199	conserved hypothetical protein High confidence in function and specificity	Putative catalase	catalase identified by match to protein family HMM PF00199	catalase cytoplasmic protein it catalyses the conversion of hydrogen peroxide to water and molecular oxygen and is thus involved in the protection of cells from the toxic effects of peroxides.	Putative catalase	Catalase domain protein PFAM: Catalase domain protein KEGG: son:SO1771.2 hypothetical catalase	
HELPY00472	Catalase-like protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark catalase	Putative uncharacterized protein	Catalase	Putative	Catalase, putative	Catalase-related protein	catalase	identified by match to protein family HMM PF00199 putative catalase	identified by match to protein family HMM PF00199 catalase	Catalase, N-terminal	Catalase-like	catalase	Catalase-like	catalase identified by match to protein family HMM PF00199	Catalase domain protein precursor	catalase like protein	Catalase-like protein	catalase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Catalase-like protein	Catalase domain protein PFAM: Catalase domain protein KEGG: bur:Bcep18194_A3196 catalase-like	Catalase domain protein PFAM: Catalase domain protein KEGG: bur:Bcep18194_C7513 catalase-like	catalase identified by match to protein family HMM PF00199	conserved hypothetical protein High confidence in function and specificity	Putative catalase	catalase identified by match to protein family HMM PF00199	catalase cytoplasmic protein it catalyses the conversion of hydrogen peroxide to water and molecular oxygen and is thus involved in the protection of cells from the toxic effects of peroxides.	Putative catalase	Catalase domain protein PFAM: Catalase domain protein KEGG: son:SO1771.2 hypothetical catalase	
HELPY00473	Putative uncharacterized protein	outer membrane protein HofC	hof-family outer membrane protein hypothetical protein	Outer membrane protein HofC	Outer membrane protein	Outer membrane protein HofC	
HELPY00474	Putative uncharacterized protein	Putative Outer membrane protein	outer membrane protein HofD	hof-family outer membrane protein outer membrane protein hypothetical protein	Putative Outer membrane protein	Outer membrane protein	Outer membrane protein HofD	
HELPY01087	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00475	Putative uncharacterized protein	
HELPY00476	Putative potassium channel protein, putative	potassium channel protein	Putative uncharacterized protein	PUTATIVE POTASSIUM CHANNEL PROTEIN	putative potassium channel, VIC family	Kef-type K+ transport system, predicted NAD- binding component	probable potassium channel protein	TrkA-N	Putative potassium channel, VIC family precursor	potassium channel protein	K+ transport systems, NAD-binding component	putative potassium channel, VIC family	potassium transporter, voltage-gated ion channel (VIC) family identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885	Potassium uptake protein, TrkA family	TrkA	potassium channel, putative identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885	potassium transporter, voltage-gated ion channel (VIC) family identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885	Putative potassium channel, VIC family	TrkA	putative potassium channel, VIC family	putative potassium channel protein	Potassium transporter, voltage-gated ion channel (VIC) family protein	MthK-like calcium-gated potassium channel	TrkA-N domain protein PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein, KEGG: aba:Acid345_3283 TrkA-N	TrkA identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885	putative potassium channel, VIC family COG569 K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	Putative potassium channel, VIC family protein	potassium uptake protein, TrkA family	potassium channel protein Calcium-gated potassium channel mthK Specificity unclear	
HELPY00477	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009 ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	ribosomal protein L28	ribosomal protein L28	Ribosomal protein L28	ribosomal protein L28	ribosomal protein L28	ribosomal protein L28 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009	ribosomal protein L28	50S ribosomal protein L28 Function unclear	ribosomal protein L28 identified by similarity to SP:P37807; match to protein family HMM PF00830; match to protein family HMM TIGR00009	50S ribosomal protein L28	ribosomal protein L28 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009	Ribosomal protein L28	ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sat:SYN_00885 ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	LSU ribosomal protein L28P	Ribosomal protein L28	50S ribosomal protein L28	
HELPY00478	Putative uncharacterized protein	neuraminyllactose-binding hemagglutinin	Neuraminyllactose-binding hemagglutinin precursor High confidence in function and specificity	Putative uncharacterized protein	Neuraminyllactose-binding hemagglutinin	Flagellar sheath adhesin	
HELPY00479	Phospho-N-acetylmuramoyl-pentapeptide-transferase	phospho-N-acetylmuramoyl-pentapeptide- transferase	phospho-N-acetylmuramoyl-pentapeptide transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	CDS_ID OB1468 phospho-N-acetylmuramoyl-pentapeptide transferase	similar to AL109663-20|CAB51996.1| percent identity: 51 in 362 aa putative phospho-N-acetylmuramoyl-pentapeptidetr ansferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	SC4A10.20c, murX, probable phospho-N-acetylmuramoyl-pentapeptide-transferase, len: 363 aa; similar to many e.g. SW:MRAY_ECOLI (EMBL:X51584), MraY, MurX, Escherichia coli phospho-N-acetylmuramoyl-pentapeptide-transferase involved in peptidoglycan biosynthesis (360 aa), fasta scores; opt: 615 z-score: 714.6 E(): 1.8e-32, 43.3% identity in 344 aa overlap. Also similar to TR:O69555 (EMBL:AL022602), MurX, Mycobacterium leprae probable phospho-N-acetylmuramoyl-pentapeptide-transferase (359 aa) (51.8% identity in 361 aa overlap). Contains hydrophobic, possible membrane-spanning regions. Contains Pfam match to entry PF00953 Glycos_transf_4, Glycosyl transferase putative phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	
HELPY00481	Uncharacterized protein HP_0495	Hypothetical protein JHP0447	hypothetical protein	conserved hypothetical protein hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00480	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine D-glutamate ligase (D-glutamic acid adding enzyme)	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	CDS_ID OB1469 UDP-N-acetylmuramoylalanine-D-glutamate ligase	similar to AL109663-19|CAB51995.1| percent identity: 44 in 454 aa putative UDP-N-acetylmuramoyl-L-alanyl-D-glutama te synthetase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine-D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	SC4A10.19c, murD, UDP-N-acetylmuramoylalanine-D-glutamate ligase, len: 471 aa; previously partially sequenced as TR:Q9ZBA7 (EMBL:U10879), MurD, Streptomyces coelicolor UDP-N-acetylmuramoylalanine-D-glutamate ligase (fragment) (221 aa) and identical to that sequence. Similar to many e.g. TR:O68388 (EMBL:AF035938), MurD, Streptococcus pyogenes UDP-N-acetylmuramoylalanine-D-glutamate ligase (452 aa), fasta scores; opt: 399 z-score: 431.5 E(): 1.1e-16, 33.3% identity in 469 aa overlap. Shows weak similarity to SC9B1.07 (EMBL:AL049727) S.coelicolor possible UDP-N-acetylmuramyl-L-alanine ligase (462 aa) (27.9% identity in 480 aa overlap). Contains Pfam match to entry PF01225 Mur_ligase, Mur ligase family putative UDP-N-acetylmuramoylalanine-D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	
HELPY00482	Uncharacterized protein HP_0496	Putative uncharacterized protein VP1056	Acyl-CoA thioester hydrolase ybgC	Thioesterase superfamily:4-hydroxybenzoyl-CoA thioesterase	Residues 1 to 134 of 134 are 99 pct identical to residues 1 to 134 of a 134 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286464.1 orf, conserved hypothetical protein	4-hydroxybenzoyl-CoA thioesterase family active site	Putative thioesterase protein	Similar to unknown protein YbgC protein of Escherichia coli	hypothetical protein	conserved gene esterase	hypothetical protein	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 thioesterase family protein	IPR008272: 4-hydroxybenzoyl-CoA thioesterase, active site putative esterase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Hypothetical protein JHP0448	Predicted thioesterase FcbC protein	Putative uncharacterized protein	Putative esterase	identified by similarity to OMNI:VC1840; match to protein family HMM PF03061; match to protein family HMM TIGR00051 conserved hypothetical protein	conserved hypothetical protein	4-hydroxybenzoyl-CoA thioesterase	4-hydroxybenzoyl-CoA thioesterase	Code: R; COG: COG0824 conserved hypothetical protein	Citation: PMID11994151 MolMicrobi. 2002;44:695-708.  PMID11959124 FEBSLett 2002;516:161-3 PMID11200223 JMolMicrobioBiotechn 2001;3:113-22 Putative thioesterase	Code: R; COG: COG0824 conserved hypothetical protein	conserved hypothetical protein	4-hydroxybenzoyl-CoA thioesterase	4-hydroxybenzoyl-CoA thioesterase	
HELPY00483	Transporter	Transporter	Transporter	identified by match to protein family HMM PF00209 sodium transporter, putative	Transporter	Putative transporter	putative sodium-dependent transporter, NSS family	identified by match to protein family HMM PF00209 sodium:neurotransmitter symporter family protein	Transporter	identified by similarity to SP:P45320; match to protein family HMM PF00209 sodium-dependent symporter family protein	Na+-dependent transporter of the SNF family precursor	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter putative sodium-dependent transporter	Na+-dependent transporter of the SNF family	sodium-and chloride-dependent transporter	Na+-dependent transporter of the SNF family protein	Sodium:neurotransmitter symporter	sodium:neurotransmitter symporter PFAM: sodium:neurotransmitter symporter KEGG: csa:Csal_3274 sodium:neurotransmitter symporter	transcript_id=ENSTBET00000004291	putative transmembrane transport protein sodium- and chloride-dependent transporter Specificity unclear	sodium:neurotransmitter symporter PFAM: sodium:neurotransmitter symporter KEGG: pca:Pcar_0402 probable sodium-dependent transporter	Hypothetical protein COG733 Na+-dependent transporters of the SNF family [General function prediction only]	Complete genome	sodium transporter, putative identified by match to protein family HMM PF00209	Putative sodium-dependent transporter, NSS family	Sodium transporter, putative	YhdH	Transporter	Transporter	
HELPY00484	Transporter	Transporter	identified by similarity to SP:P45320; match to protein family HMM PF00209 sodium transporter, putative	Molecular Function: neurotransmitter:sodium symporter activity (GO:0005328), Cellular Component: integral to plasma membrane (GO:0005887), Biological Process: neurotransmitter transport (GO:0006836), Cellular Component: membrane (GO:0016020) putative Sodium:neurotransmitter symporter	Putative uncharacterized protein	Putative transporter	identified by match to protein family HMM PF00209 sodium-and chloride-dependent transporter	Sodium:neurotransmitter symporter	Sodium-dependent transporter	sodium:neurotransmitter symporter	Sodium:neurotransmitter symporter	transcript_id=ENSDNOT00000008212	transcript_id=ENSETET00000002482	transcript_id=ENSGACT00000010091	sodium-and chloride-dependent transporter	sodium-dependent transporter family protein	Sodium:neurotransmitter symporter precursor	sodium-and chloride-dependent transporter identified by match to protein family HMM PF00209	sodium-and chloride-dependent transporter fragment 1 sodium-dependent transporter Specificity unclear	transcript_id=ENSSART00000006155	sodium transporter, putative identified by match to protein family HMM PF00209	Sodium-dependent transporter of the SNF family	Transporter	Sodium:neurotransmitter symporter precursor	transcript_id=ENSOPRT00000008015	Transporter	Sodium:neurotransmitter symporter precursor	Molybdenum ABC transporter, periplasmic molybdate -binding protein	
HELPY00485	Phospholipase A1	Phospholipase A1	identified by similarity to GP:2243138; match to protein family HMM PF02253 phospholipase A	Phospholipase A	Putative PHOSPHOLIPASE A1	Putative phopholipase	Outer membrane phospholipase A	Best Blastp Hit: emb|CAB85240.1| (AL162757) putative phopholipase [Neisseria meningitidis] putative phospholipase	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative outer membrane phospholipase A precursor	Phospholipase A1	Phospholipase A1	Phospholipase A(1) precursor	Outer membrane phospholipase A	phospholipase A1	Phospholipase A1	phospholipase A High confidence in function and specificity	Putative phospholipase A1	phospholipase A1 PFAM: phospholipase A1 KEGG: hch:HCH_01113 outer membrane phospholipase A	phospholipase A identified by match to protein family HMM PF02253	Phospholipase A(1) PFAM: phospholipase A1 KEGG: shm:Shewmr7_0898 phospholipase A(1)	Phospholipase A(1) PFAM: phospholipase A1 KEGG: pha:PSHAa0175 phospholipase A precursor	Phospholipase A(1) precursor	Phospholipase A(1) KEGG: sdn:Sden_0955 phospholipase A1	Phospholipase A(1) precursor	Phospholipase A(1) precursor	Phospholipase A(1) precursor	PFAM: phospholipase A1 KEGG: shm:Shewmr7_0898 phospholipase A(1) Phospholipase A(1)	Phospholipase A	
HELPY00486	DNA polymerase III subunit beta	DNA polymerase III beta subunit	DNA-directed DNA polymerase III beta subunit	Beta subunit of DNA polymerase III	DNA polymerase III, beta subunit	DNA polymerase III, beta chain	DNA polymerase III subunit beta	DNA POLYMERASE III, BETA CHAIN	Putative DNA polymerase III, beta subunit	DNA polymerase III, beta chain	DNA polymerase III, beta chain	DNA polymerase III subunit beta	CDS_ID OB0002 DNA-directed DNA polymerase III beta chain	similar to L39923-25|AAB53142.1| percent identity: 50 in 390 aa putative DNA polymerase III beta subunit	Putative DNA polymerase III, beta chain	DNA polymerase III beta subunit	DNA polymerase III, beta subunit	DNA polymerase III, beta chain	DNA polymerase III, beta chain	DNA polymerase III beta subunit	DNA polymerase III beta subunit	DNA polymerase III, beta subunit	DNA polymerase III subunit beta	DNA polymerase III subunit beta	DNA polymerase III beta subunit	DNA polymerase III beta chain	DNA polymerase III, beta chain	DNA polymerase III subunit beta	DNA polymerase III, beta chain	
HELPY00487	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase, B subunit	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA GYRASE SUBUNIT B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	CDS_ID OB0006 DNA gyrase subunit B	DNA gyrase subunit B	similar to X92503-7|CAA63253.1| percent identity: 72 in 685 aa putative DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	

HELPY00489	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00491	Putative uncharacterized protein	hypothetical protein	
HELPY00492	Conserved hypothetical secreted protein	similar to membrane proteins related to metalloendopeptidases hypothetical protein	conserved gene peptidase, M23/M37 family	similar to membrane proteins related to metalloendopeptidases hypothetical protein	identified by match to protein family HMM PF01551 peptidase, M23/M37 family	Membrane protein related to metalloendopeptidases	Putative uncharacterized protein	Putative Outer membrane protein	cell wall endopeptidase, family M23/M37	M23/M37 peptidase	Peptidase M23B	putative outer membrane protein	Peptidase M23B	peptidase, M23/M37 family identified by match to protein family HMM PF01551	peptidase, M23/M37 family	conserved hypothetical protein Specificity unclear	metalloprotease, opacity-associated protein A family identified by match to protein family HMM PF01551; match to protein family HMM PF04225	M23 peptidase domain protein M23 peptidase metal-binding motif and HXH active site are conserved.; identified by match to protein family HMM PF01551	peptidase M23B PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein KEGG: shm:Shewmr7_2963 peptidase M23B	Membrane-bound metallopeptidase	peptidase, M23/M37 family identified by match to protein family HMM PF01551	Peptidase M23B	Peptidase, M23/M37 family	Peptidase, M23/M37 family	Probable M23/M37 family peptidase	Peptidase, M23/M37 family	Peptidase, M23/M37 family	Putative periplasmic protein	Peptidase, M23/M37 family	
HELPY00493	Putative uncharacterized protein	Residues 1 to 191 of 191 are 98 pct identical to residues 1 to 191 of a 191 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289019.1 orf, conserved hypothetical protein	identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 NUDIX domain protein	putative pyrophosphohydrolase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative	GDP-mannose pyrophosphatase nudK	Code: LR; COG: COG0494 conserved hypothetical protein	Code: LR; COG: COG0494 conserved hypothetical protein	nudix (nucleoside diphosphate linked moiety X)-type motif 14 [Source:HGNC Symbol;Acc:20141]	Nucleoside diphosphate pyrophosphatase	Code: LR; COG: COG0494; orf conserved hypothetical protein	transcript_id=ENSETET00000003947	transcript_id=ENSGACT00000010030	GDP-mannose pyrophosphatase nudK	hypothetical protein	GDP-mannose pyrophosphatase nudK	transcript_id=ENSFCAT00000000685	nudix domain protein identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052	transcript_id=ENSSTOT00000005661	conserved hypothetical protein putative uridine diphosphate glucose pyrophosphatase (EC 3.6.1.45) (UGPPase) (Nucleoside diphosphate linked moiety X motif 14) High confidence in function and specificity	Uridine diphosphate glucose pyrophosphatase (UDPG pyrophosphatase)(UGPPase)(EC 3.6.1.45)(Nucleoside diphosphate-linked moiety X motif 14)(Nudix motif 14) [Source:UniProtKB/Swiss-Prot;Acc:O95848]	Hypothetical protein	NUDIX domain protein identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052	conserved hypothetical protein Code: LR; COG: COG0494	putative NUDIX hydrolase	Putative uncharacterized protein	
HELPY00494	Plasminogen-binding protein pgbA	plasminogen binding protein	conserved hypothetical protein hypothetical protein	Plasminogen binding protein	Plasminogen binding protein	Plasminogen binding protein	
HELPY00495	Glycolate oxidase subunit	FAD/FMN-containing dehydrogenase	identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913 glycolate oxidase, subunit GlcD	glycolate oxidase subunit	Glycolate oxidase	Putative Glycolate oxidase	D-lactate dehydrogenase (cytochrome)	Glycolate oxidase subunit D	FAD linked oxidase-like	FAD linked oxidase-like	glycolate oxidase subunit	glycolate oxidase subunit-like protein ysfC identified by match to protein family HMM PF01565; match to protein family HMM PF02913	Putative oxidoreductase	glycolate oxidase, subunit GlcD identified by match to protein family HMM PF01565; match to protein family HMM PF02913	glycolate oxidase subunit Glycolate oxidase subunit glcD High confidence in function and specificity	putative glycolate oxidase, GlcD subunit identified by match to protein family HMM PF01565; match to protein family HMM PF02913	Probable FAD/FMN-dehydrogenase	glycolate oxidase, subunit GlcD identified by match to protein family HMM PF01565; match to protein family HMM PF02913	FAD linked oxidase	FAD linked oxidase domain protein PFAM: FAD linked oxidase domain protein KEGG: gsu:GSU3296 glycolate oxidase subunit GlcD, putative	FAD-binding oxidoreductase	Glycolate oxidase, subunit GlcD	Putative glycolate oxidase subunit D	Glycolate oxidase	D-lactate dehydrogenase	FAD linked oxidase domain protein	FAD linked oxidase domain protein	Glycolate oxidase, subunit GlcD	FAD linked oxidase domain protein	
HELPY00496	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Residues 1 to 273 of 273 are 99 pct identical to residues 1 to 273 of a 273 aa protein from Escherichia coli K12 ref: NP_414572.1 dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	dihydrodipicolinate reductase	identified by similarity to SP:Q52419; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	identified by similarity to SP:P04036; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	
HELPY00498	Glutamine synthetase	Glutamine synthetase, type I	Glutamine synthetase	GLUTAMINE SYNTHETASE	Glutamine synthetase	Glutamine synthetase	similar to AF050112-1|AAC28311.1| percent identity: 65 in 474 aa putative glutamine synthetase I	glutamine synthetase I	Glutamine synthetase	Glutamine synthetase	SC3H12.06, glnA, glutamine synthetase I, len: 469 aa; identical to previously sequenced SW:GLNA_STRCO (EMBL:M23172) Streptomyces coelicolor glutamine synthetase (EC 6.3.1.2) (glutamate-ammonia ligase) GlnA, 469 aa and to previously sequenced TR:CAB51282 (EMBL:AL096872) Streptomyces coelicolor glutamine synthetase I SC5F7.03, 469 aa and highly similar to SW:GLN1_STRVR (EMBL:X70924) Streptomyces viridochromogenes glutamine synthetase I (EC 6.3.1.2) (glutamate-ammonia ligase I) GlnI or GlnA, 469 aa; fasta scores: opt: 2905 z-score: 3417.5 E(): 0; 90.6% identity in 469 aa overlap. Contains Pfam match to entry PF00120 gln-synt, Glutamine synthetase and three Prosite matches to entries PS00180 Glutamine synthetase signature 1, PS00181 Glutamine synthetase putative ATP-binding region signature and PS00182 Glutamine synthetase class-I adenylation site glutamine synthetase I	Glutamine synthetase	Glutamine synthetase	Glutamine synthetase I	Putative glutamine synthetase protein	Residues 1 to 469 of 469 are 100 pct identical to residues 1 to 469 of a 469 aa protein from Escherichia coli O157:H7 ref: NP_312819.1 glutamine synthetase	Glutamine synthetase	Glutamine synthetase	Glutamine synthetase	Glutamine synthetase	glutamine synthetase	conserved gene glutamine synthetase, type I	glutamine synthetase	glutamine synthetase glutamate--ammonia ligase	identified by similarity to SP:P06201; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 glutamine synthetase, type I	Glutamine synthetase	identified by similarity to SP:P06711; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 glutamine synthetase, type I	Glutamine synthetase	Glutamine synthetase	

HELPY00499	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Similar to Methanosarcina acetivorans hypothetical protein MA2417 SWALL:Q8TN76 (EMBL:AE010933) (702 aa) fasta scores: E(): 1.2e-117, 52.14% id in 698 aa, and to Helicobacter pylori J99 putative JHP0462 SWALL:Q9ZLW4 (EMBL:AE001480) (706 aa) fasta scores: E(): 1.5e-83, 40.66% id in 718 aa conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein; possible RloF protein	hypothetical protein	conserved hypothetical protein	protein of unknown function DUF1524 RloF	protein of unknown function DUF1524 RloF PFAM: protein of unknown function DUF262: (5.4e-07) protein of unknown function DUF1524 RloF: (3.3e-42) KEGG: mac:MA2417 hypothetical protein, ev=0.0, 61% identity	conserved hypothetical protein identified by match to protein family HMM PF03235; match to protein family HMM PF07510	Putative uncharacterized protein	hypothetical protein	protein of unknown function DUF1524 RloF	Putative uncharacterized protein	Hypothetical protein	hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00500	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9 (BL17)	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	CDS_ID OB3461 50S ribosomal protein L9	similar to AL583926-91|CAC32214.1| percent identity: 54 in 150 aa putative 50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9, cultivar specific nodulation protein Csn1	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	SCH24.31, rplI, 50S ribosomal protein L9, len: 148 aa; similar to many e.g. SW:RL9_BACST (EMBL:X62002), RplI, Bacillus stearothermophilus 50S ribosomal protein L9 (149 aa), fasta scores; opt: 346 z-score: 415.7 E(): 7.7e-16, 36.6% identity in 145 aa overlap. Contains Pfam match to entry PF01281 Ribosomal_L9, Ribosomal protein L9, score 203.80, E-value 2.6e-57 and PS00651 Ribosomal protein L9 signature 50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	
HELPY00501	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	CDS_ID OB1549; heat shock protein HslV ATP-dependent protease	heat shock protein hslV, proteasome-related peptidase subunit	ATP-dependent protease hslV	ATP-dependent protease HslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	Heat shock protein hslV	ATP-dependent protease hslV	Residues 1 to 176 of 176 are 99 pct identical to residues 1 to 176 of a 176 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290563.1 heat shock protein hslVU, proteasome-related peptidase subunit	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	Peptidase component of the HslUV protease (Heat shock protein)	conserved gene heat shock protein, HslVU, proteasome-related peptidase subunit	Peptidase component of the HslUV protease (Heat shock protein)	
HELPY00502	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	CDS_ID OB1550; heat-shock protein HslU ATP-dependent Clp protease	ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU (heat shock protein)	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	Heat shock protein hslU	ATP-dependent hsl protease ATP-binding subunit hslU	Residues 1 to 443 of 443 are 100 pct identical to residues 1 to 443 of a 443 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290562.1 heat shock protein hslVU, ATPase subunit, homologous to chaperones	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit HslU	conserved gene ATP dependent Hsl protease, ATP binding subunit	ATP-dependent hsl protease ATP-binding subunit HslU	
HELPY00503	GTP-binding protein era homolog	glr4422	GTP-binding protein	Putative GTP-binding protein	GTP-binding protein era homolog	GTP-binding protein Era	GTP-binding protein Era homolog	GTP-binding protein Era homolog	GTP-binding protein era homolog	GTP-binding protein era	GTP-binding protein era homolog	GTP-binding protein era homolog	GTP-binding protein era homolog	GTP-binding protein era	CDS_ID OB1951; Era/TrmE family GTP-binding protein	GTP-binding protein era homolog	similar to Z99117-9|CAB14471.1| percent identity: 40 in 300 aa putative GTP-binding protein	GTP-binding protein Era	GTP-binding protein era homolog	GTP-binding protein era-like protein	GTP-binding protein era homolog	Possible GTP-binding protein Era	GTP-binding protein era homolog	GTP-binding protein era homolog	GTP-binding protein era homolog	GTP-binding protein era homolog	GTP-binding protein, cell cycle control	GTP-binding protein era homolog	SCC77.06, Era-like GTP-binding protein, len: 320 aa. Highly similar to many Era GTP-binding proteins essential for cellular proliferation: Escherichia coli SW:ERA_ECOLI(EMBL:M14658) GTP-binding protein Era (301 aa), fasta scores opt: 434 z-score: 499.6 E(): 1.9e-20 36.4% identity in 302 aa overlap and Mycobacterium tuberculosis SW:ERA_MYCTU(EMBL:Z95208) GTP-binding protein Era homologue (300 aa), fasta scores opt: 1264 z-score: 1440.4 E(): 0 64.1% identity in 306 aa overlap. Contains a Prosite hit to PS00017 ATP/GTP-binding site motif A (P-loop). Era-like GTP-binding protein.	
HELPY00504	Conserved hypothetical secreted protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	conserved hypothetical secreted protein	putative periplasmic protein	conserved hypothetical protein Function unclear	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative periplasmic protein	Putative periplasmic protein	Conserved hypothetical secreted protein	Conserved hypothetical secreted protein	Putative periplasmic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	ErfK/YbiS/YcfS/YnhG family protein	
HELPY00505	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00506	Cag pathogenicity island protein	cag pathogenicity island protein 1	Cag pathogenicity island protein	Cag pathogenicity island protein 1	
HELPY00507	Cag pathogenicity island protein	cag pathogenicity island protein 3	Cag pathogenicity island protein	Cag pathogenicity island protein 3	
HELPY00508	Cag pathogenicity island protein	cag pathogenicity island protein 4	Cag pathogenicity island protein	Cag pathogenicity island protein 4	
HELPY00509	Cag pathogenicity island protein	VIRD4 PROTEIN	Conjugal transfer protein	Type IV secretory pathway, VirD4 component	VirD4 protein	Cag island protein, DNA transfer protein	Similar to sp|P18594|VID4_AGRT5; Ortholog to ERGA_CDS_00130 Putative virD4 protein	COG3505 VirD4 type IV secretory pathway, VirD4 components similar to AAM00422.1 VirD4 protein	protein VirD4	conjugal transfer protein TraG	Similar to sp|P18594|VID4_AGRT5; Ortholog to ERWE_CDS_00130 Putative virD4 protein	TRAG protein	VirD4 protein	TRAG protein	VirD4	type IV secretion system protein VirD4 identified by similarity to GB:AAM00422.1; match to protein family HMM PF02534	cag pathogenicity island protein 5	type IV secretion system protein VirD4 identified by similarity to GB:AAM00416.1; match to protein family HMM PF02534	TRAG family protein precursor	TRAG family protein	TRAG family protein PFAM: TRAG family protein KEGG: rso:RSc2586 probable plasmid conjugation traG transmembrane protein	cmgD4 identified by match to protein family HMM PF02534	TRAG protein PFAM: TRAG protein KEGG: rpa:RPA4132 plasmid transfer factor, traG	Type IV secretion system protein	TRAG protein	VirD4 protein	VirD4	VirD4	VirD4 protein	
HELPY00510	Cag alpha	virB11 protein homolog	Type IV secretion protein AvhB11	Type IV secretory pathway, VirB11 component	similar to BRA0059, type IV secretion system protein VirB11 type IV secretion system protein VirB11	Type IV secretion system protein virB11	Cag island protein, DNA transfer protein	TriJ protein	VirB11 ATPase	VirB11 protein	Bacterial type II secretion system protein E:ATP/GTP-binding site motif A (P-loop):Sigma-54 factor interaction domain	TriJ	putative tight adherence protein Similar to Haemophilus ducreyi tadA SWALL:Q8KQI7 (EMBL:AY083157) (427 aa), and similar, but truncated at the N-terminus, to Bdellovibrio bacteriovorus CpaF protein SWALL:Q6MPQ4 (EMBL:BX842648) (368 aa) similarity:fasta; SWALL:Q8KQI7 (EMBL:AY083157); Haemophilus ducreyi; TadA; length 427 aa; 322 aa overlap; query 108-429 aa; subject 72-391 aa similarity:fasta; SWALL:Q6MPQ4 (EMBL:BX842648); Bdellovibrio bacteriovorus; CpaF protein; length 368 aa; 350 aa overlap; query 98-443 aa; subject 7-354 aa	Type II secretion system protein E	type II secretion system protein E	cag pathogenicity island encoded protein/ATPase protein	type II secretion system protein E	ATP/GTP-binding site motif A (P-loop) TIGRFAM: ATP/GTP-binding site motif A (P-loop) PFAM: type II secretion system protein E KEGG: bcn:Bcen_4845 type II secretion system protein E	type II secretion system protein E PFAM: type II secretion system protein E KEGG: xac:XAC2618 VirB11 protein	Type IV secretory pathway, VirB11 component	cmgB11 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02788	Type IV secretory pathway AvhB11 protein	Putative Type II/IV secretion system protein	P-type DNA transfer ATPase VirB11	P-type DNA transfer ATPase VirB11	TIGRFAM: P-type conjugative transfer ATPase TrbB PFAM: type II secretion system protein E KEGG: ppr:PBPRB1602 hypothetical protein trbB P-type conjugative transfer ATPase TrbB	Type II secretion system protein E	P-type DNA transfer ATPase VirB11	P-type DNA transfer ATPase VirB11 precursor	
HELPY00511	Cag pathogenicity island protein	cag pathogenicity island protein Z	Cag pathogenicity island protein	Cag pathogenicity island protein Z	
HELPY00512	Cag pathogenicity island protein	Putative uncharacterized protein	Streptococcal hemagglutinin protein	FmtB FmtB protein surface protein	Cag island protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1841 putative surface anchored protein	Chromosome partition protein Smc	Similar to Staphylococcus aureus hypothetical protein affecting the methicillin resistance Mrp TR:Q9RL69 (EMBL:Y09927) (2478 aa) fasta scores: E(): 2e-139, 32.553% id in 2178 aa, and to Abiotrophia defectiva extracellular matrix binding protein Emb TR:O85472 (EMBL:AF067776) (2055 aa) fasta scores: E(): 1.8e-62, 25.954% id in 2096 aa.  Probable LPXTG-sorted surface protein putative surface anchored protein	early endosome antigen 1 [Source:HGNC Symbol;Acc:3185]	cell wall surface anchor family protein identified by match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168	truncated cell surface fibronectin-binding protein	transcript_id=ENSOCUT00000013964	transcript_id=ENSGACT00000026589	AAA ATPase containing von Willebrand factor type A (VWA) domain-like protein precursor	cag pathogenicity island protein Y	conserved hypothetical protein	transcript_id=ENSFCAT00000003089	transcript_id=ENSTBET00000016400	Golgin subfamily A member 4 (Trans-Golgi p230)(256 kDa golgin)(Golgin-245)(Protein 72.1) [Source:UniProtKB/Swiss-Prot;Acc:Q13439]	kinesin K39, putative previous systematic id LinJ14.0850	Subtilisin-like serine protease	hypothetical protein	transcript_id=ENSMICT00000005127	transcript_id=ENSOPRT00000004733	Putative uncharacterized protein	cell surface anchored protein	jgi|Helro1|174839	
HELPY00513	Cag pathogenicity island protein	cag pathogenicity island protein X	Cag pathogenicity island protein	Cag pathogenicity island protein X	
HELPY00514	Cag pathogenicity island protein	cag pathogenicity island protein W	Cag pathogenicity island protein	Cag pathogenicity island protein W	
HELPY00515	Cag pathogenicity island protein	cag pathogenicity island protein V	Cag pathogenicity island protein	Cag pathogenicity island protein V	Conjugal transfer protein TraJ/VirB8	
HELPY00516	Cag pathogenicity island protein	cag pathogenicity island protein U	Cag pathogenicity island protein	Cag pathogenicity island protein U	
HELPY00517	CAG pathogenicity island protein 12	cag pathogenicity island protein T	Cag pathogenicity island protein	Cag pathogenicity island protein T	
HELPY00519	CAG pathogenicity island protein 13	cag pathogenicity island protein S	Cag pathogenicity island protein	Cag pathogenicity island protein S	

HELPY00520	Cag pathogenicity island protein	cag pathogenicity island protein Q	Cag pathogenicity island protein	Cag pathogenicity island protein Q	
HELPY00521	Cag pathogenicity island protein	Cag pathogenicity island protein	
HELPY00522	Cag pathogenicity island protein	cag pathogenicity island protein M	Cag pathogenicity island protein	Cag pathogenicity island protein M	
HELPY00523	Cag pathogenicity island protein	cag pathogenicity island protein N	Cag pathogenicity island protein	Cag pathogenicity island protein N	
HELPY00524	Cag pathogenicity island protein	cag pathogenicity island protein L	Cag pathogenicity island protein	Cag pathogenicity island protein L	
HELPY00525	Cag pathogenicity island protein	cag pathogenicity island protein I	Cag pathogenicity island protein	Cag pathogenicity island protein I	
HELPY00526	Cag pathogenicity island protein	cag pathogenicity island protein H	Cag pathogenicity island protein	Cag pathogenicity island protein H	
HELPY00527	Cag pathogenicity island protein	cag pathogenicity island protein G	Cag pathogenicity island protein	Cag pathogenicity island protein G	
HELPY00528	Cag pathogenicity island protein	cag pathogenicity island protein F	Cag pathogenicity island protein	Cag pathogenicity island protein F	
HELPY00529	CAG pathogenicity island protein 23	conjugal transfer protein	VIRB4 PROTEIN	Conjugal transfer protein	Type IV secretion protein AvhB4	Type IV secretory pathway, VirB4 components	similar to BRA0066, type IV secretion system protein VirB4 type IV secretion system protein VirB4	VirB4 protein	CAG pathogenicity island protein 23	TriC protein	Similar to rp||virB4 sp|P17794|VIB4_AGRT5 sp|P05353|VIB4_AGRTU; Ortholog to ERGA_CDS_05400 VIRB4 protein precursor	COG3451 VirB4 type IV secretory pathway, VirB4 components similar to AAM00407.1 other copies include: AM1053 VirB4 protein	VirB4 ATPase	Similar to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT0093 SWALL:AAO75200 (EMBL:AE016926) (834 aa) fasta scores: E(): 0, 97.84% id in 834 aa, and to Bacteroides thetaiotaomicron TraG SWALL:Q9F6U2 (EMBL:AF289050) (838 aa) fasta scores: E(): 0, 73.65% id in 835 aa, and to Bacteroides thetaiotaomicron conserved protein found in conjugate transposon BT4770 SWALL:AAO79875 (EMBL:AE016946) (772 aa) fasta scores: E(): 0, 74.74% id in 772 aa conserved hypothetical protein found on conjugate transposon	VirB4 protein	Similar to rp||virB4 sp|P17794|VIB4_AGRT5 sp|P05353|VIB4_AGRTU; Ortholog to ERWE_CDS_05510 VIRB4 protein precursor	identified by match to protein family HMM PF03135 conjugal transfer protein	Type IV secretion/conjugal transfer ATPase, VirB4 family	CagE, TrbE, VirB family component of typeIV transporter system	Shikimate kinase:ATP/GTP-binding site motif A (P-loop):CagE, TrbE, VirB family component of type IV transporter system	type IV secretion system protein VirB4 identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929	VirB4	type IV secretion system protein VirB4	type IV secretion/conjugal transfer ATPase, VirB4 family	type IV secretion system protein VirB4 identified by similarity to GB:AAM00407.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929	transport secretion system IV, VirB4 protein similar to virB4 (SMa1315) [Sinorhizobium meliloti]; putative location:bacterial cytoplasm Psort-Score: 0.1323; go_function: ATP binding [goid 0005524]; go_function: nucleotide binding [goid 0000166]	type IV secretion system protein VirB4 identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929	cmgB3/4 identified by match to protein family HMM PF03135; match to protein family HMM PF05101	Type IV secretory pathway AvhB4 protein	
HELPY00530	Cag pathogenicity island protein	cag pathogenicity island protein D	Cag pathogenicity island protein	Cag pathogenicity island protein D	
HELPY00531	Cag pathogenicity island protein	cag pathogenicity island protein C	Cag pathogenicity island protein	Cag pathogenicity island protein C	

HELPY00532	Cytotoxicity-associated immunodominant antigen	cytotoxin-associated protein A	Cytotoxin-associated protein A	Putative uncharacterized protein	Cytotoxin-associated protein A	


HELPY00533	Glutamate racemase	glutamate racemase	glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	CDS_ID OB2108 glutamate racemase	similar to AB020624-1|BAA78374.1| percent identity: 89 in 282 aa glutamate racemase	Probable glutamate racemase	Glutamate racemase	Glutamate racemase	Putative glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	Aspartate and glutamate racemases:Glutamate racemase	Glutamate racemase	Glutamate racemase	Glutamate racemase	similar to glutamate racemase hypothetical protein	conserved gene glutamate racemase	similar to glutamate racemase hypothetical protein	
HELPY00534	Transcription termination factor rho	Transcription termination factor Rho	TRANSCRIPTION TERMINATION FACTOR RHO	Transcription termination factor Rho	Transcription termination factor rho	CDS_ID OB3001 transcriptional termination factor rho	Probable transcription termination factor Rho	transcription termination factor rho	Transcription termination factor Rho	Transcription termination factor rho	Transcription termination factor rho	Transcription termination factor rho	Transcriptional terminator	Transcription termination factor rho	SC4G1.17c, probable transcription terminator factor, len: 415 aa; similar to C-terminal part of SW:RHO_STRLI (EMBL:X95444) Streptomyces lividans transcription termination factor Rho, 707 aa; fasta scores: opt: 1185 z-score: 1296.6 E(): 0; 54.8% identity in 383 aa overlap and to TR:CAB94528 (EMBL:AL359152) Streptomyces coelicolor rho, transcription termination factor, partial CDS 2St6G5.01, 383 aa; fasta scores: opt: 1187 z-score: 1150.1 E(): 0; 56.5% identity in 368 aa overlap. Contains Pfam match to entry PF00006 ATP-synt_ab, ATP synthase alpha/beta family and match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) putative transcription terminator factor	Transcription termination factor	Transcription termination factor Rho	Transcription termination factor Rho	Transcription termination factor rho	Rho protein	Transcription termination factor rho	Rho	Residues 25 to 443 of 443 are 100 pct identical to residues 1 to 419 of a 419 aa protein from Escherichia coli O157:H7 ref: NP_312743.1 transcription termination factor Rho	Transcription Termination Factor	Transcription termination factor	Rho; Transcription termination factor	Transcription termination factor Rho	Rho protein	Probable transcription termination factor rho (Helicase) protein	
HELPY00535	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	50S ribosomal protein L31	50S ribosomal protein L31 type B	50S ribosomal protein L31	50S ribosomal protein L31 type B	50S ribosomal protein L31	CDS_ID OB3000 50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31 type B	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	50S ribosomal protein L31	50S ribosomal protein L31	SCE9.34c, rpmE, probable 50S ribosomal protein L31, len: 84 aa; similar to many e.g. SW:RK31_GUITH (EMBL:U81044) Guillardia theta chloroplast 50S ribosomal protein L31 (72 aa), fasta scores; opt: 149 z-score: 220.0 E(): 6.2e-05, 48.8% identity in 43 aa overlap. Contains Pfam match to entry PF01197 Ribosomal_L31, Ribosomal protein L31, score 59.20, E-value 8.7e-14 and PS01143 Ribosomal protein L31 signature putative 50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31 type B	50S ribosomal protein L31	Residues 1 to 70 of 70 are 98 pct identical to residues 1 to 70 of a 70 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290567.1 50S ribosomal subunit protein L31	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31 type B	50S ribosomal protein L31	
HELPY00536	UPF0011 protein HP_0552	hypothetical conserved protein	Putative methyltransferase	UPF0011 protein SpyM3_0292/SPs1565	Tetrapyrrole methylase family protein	Putative tetrapyrrole (Corrin/porphyrin) methylase	Predicted methyltransferase	METHYLTRANSFERASE	Putative SAM-dependent methyltransferase	Putative uncharacterized protein	Putative uncharacterized protein VP0450	Putative uncharacterized protein	UPF0011 protein yraL	CDS_ID OB0044 hypothetical protein	UPF0011 protein MYPU_0540	similar to AP003004-212|BAB51241.1| percent identity: 38 in 283 aa conserved hypothetical protein	Putative uncharacterized protein	Tetrapyrrole methylase family protein	Putative uncharacterized protein	Tetrapyrrole (Corrin/Porphyrin) methylase family protein	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	Predicted methyltransferase	Tetrapyrrole methylase	UPF0011 protein BH0049	UPF0011 protein BU091	Putative tetrapyrrole methylase	Putative uncharacterized protein	SCE87.04c, conserved hypothetical protein, len: 286 aa. Highly similar to many including: Mycobacterium tuberculosis SW:YA03_MYCTU (EMBL:Z94752) hypothetical 29.7 KD protein RV1003 (285 aa), fasta scores opt: 877 z-score: 992.7 E():0 53.6% identity in 278 aa overlap and Bacillus subtilis SW:YABC_BACSU (EMBL:D26185) hypothetical 33.0 KD protein (292 aa), fasta scores opt: 640 z-score: 726.6 E():0 41.3% identity in 276 aa overlap. Contains a Pfam match to entry PF00590 TP_methylase, Tetrapyrrole (Corrin/Porphyrin) Methylases. conserved hypothetical protein	Predicted methyltransferases	
HELPY00537	Putative uncharacterized protein	tRNA/rRNA methyltransferase	tRNA/rRNA methyltransferase	RNA methyltransferase, TrmH family, group 3	SpoU class tRNA/rRNA methylase	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	TRNA/RRNA METHYLTRANSFERASE	Putative uncharacterized protein	tRNA/rRNA metyltransferase	RNA methyltransferase, TrmH family, group 3	Putative uncharacterized protein	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	Putative rRNA methylase	RRNA methylase, YACO B.subtilis ortholog	tRNA/rRNA methyltransferase	RRNA methylase	RNA methyltransferase, TrmH family, group 3	rRNA methylase	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	Putative uncharacterized protein RP664	Lin0273 protein	Identified by comparison to Brucella pseudo 23s ribosomal rna metyltransferase	TRNA/rRNA methyltransferase	Residues 1 to 243 of 243 are 100 pct identical to residues 1 to 243 of a 243 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290810.1 orf, conserved hypothetical protein	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	YjfH protein	SpoU	
HELPY00538	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00539	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	putative periplasmic protein	conserved hypothetical protein Region start changed from 762342 to 762384 (42 bases)	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative periplasmic protein	Putative uncharacterized protein	Bifunctional protein HldE	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00540	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00541	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	acetyl-CoA carboxylasealpha subunit	Putative acetyl-CoA carboxylase alpha subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Putative acetyl-CoA carboxylase alpha subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	CDS_ID OB2173 acetyl-CoA carboxylase carboxyltransferase alpha subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	acetyl-CoA carboxylase carboxyltransferase alpha subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Residues 1 to 319 of 319 are 100 pct identical to residues 1 to 319 of a 319 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285879.1 acetylCoA carboxylase, carboxytransferase component, alpha subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	acetyl-CoA carboxylase carboxyl transferase subunit alpha	conserved gene acetyl CoA carboxylase, carboxyltransferase, alpha subunit	acetyl-CoA carboxylase carboxyl transferase subunit alpha	
HELPY00542	Beta ketoacyl-acyl carrier protein synthase II	3-oxoacyl-[acyl-carrier-protein] synthase beta chain	3-oxoacyl-[acyl-carrier protein] synthase	3-oxoacyl-(Acyl-carrier-protein) synthase II	3-OXOACYL-(ACYL-CARRIER-PROTEIN) SYNTHASE II	3-oxoacyl-[acyl-carrier-protein] synthase 2	CDS_ID OB1205 3-oxoacyl-(acyl-carrier protein) synthase	3-oxoacyl-acyl carrier protein synthase II	3-oxoacyl-(Acyl-carrier-protein) synthase II	3-oxoacyl-[acyl-carrier-protein] synthase 2	3-oxoacyl-acyl carrier protein synthase II	3-oxoacyl-(Acyl-carrier protein) synthase	SCBAC28G1.13, actIORF1, actinorhodin polyketide beta-ketoacyl synthase alpha subunit, len: 467 aa; identical to C-terminal region of SW:KASA_STRCO (EMBL:X63449) Streptomyces coelicolor actinorhodin polyketide putative beta-ketoacyl synthase 1 ActI ORF1, 424 aa. Previously sequenced start codon at residue 44 of this sequence. Also similar to TR:CAB45606 (EMBL:AL079356) Streptomyces coelicolor polyketide beta-ketoacyl synthase alpha (WhiE locus) SC6G9.15, 424 aa; fasta scores: opt: 1706 Z-score: 1660.2 bits: 316.4 E(): 9.5e-87; 61.871% identity in 417 aa overlap. Contains Pfam matches to entries PF00109 ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain and PF02801 ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal domain and match to Prosite entry PS00606 Beta-ketoacyl synthases active site actinorhodin polyketide beta-ketoacyl synthase alpha subunit	3-oxoacyl-(Acyl-carrier-protein) synthase	3-oxoacyl-(Acyl-carrier-protein) synthase	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE II	Beta-ketoacyl synthase	Residues 1 to 413 of 413 are 99 pct identical to residues 1 to 413 of a 413 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287229.1 3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II	Beta-ketoacyl synthase	3-oxoacyl-[acyl-carrier-protein] synthase 2	3-oxoacyl-[acyl-carrier protein] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase I/II	identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801 3-oxoacyl-(acyl carrier protein) synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-[ACP] synthase II	identified by similarity to GP:6118425; match to protein family HMM PF00109; match to protein family HMM PF02801 3-oxoacyl-(acyl-carrier-protein) synthase II	3-oxoacyl-(Acyl-carrier protein) synthase II protein	InterProMatches:IPR000794, IPR000719; Molecular Function: catalytic activity (GO:0003824), Biological Process: fatty acid biosynthesis (GO:0006633), Molecular Function: protein kinase activity (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid ph beta-ketoacyl-acyl carrier protein synthase II	
HELPY00543	Acyl carrier protein	acyl carrier protein	acyl carrier protein (ACP)	Putative acyl carrier protein	Acyl carrier protein	acyl carrier protein	Acyl carrier protein	Acyl carrier protein acpP	Acyl carrier protein	Acyl carrier protein	CDS_ID OB1525 acyl carrier proteins	Acyl carrier protein	acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	SC4A7.17, acpP, acyl carrier protein, len: 82 aa; identical to previously sequenced TR:P72393 (EMBL:X86475) Streptomyces coelicolor acyl carrier protein AcpP, 82 aa and similar to SW:ACP_MYXXA Myxcoccus xanthus acyl carrier protein AcpP, 78 aa; fasta scores: opt: 306 z-score: 396.9 E(): 1e-14; 62.7% identity in 75 aa overlap. Contains Pfam match to entry PF00550 pp-binding, Phosphopantetheine attachment site acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Residues 1 to 78 of 78 are 100 pct identical to residues 1 to 78 of a 78 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287228.1 acyl carrier protein	
HELPY00545	3-ketoacyl-acyl carrier protein reductase	3-oxoacyl-[acyl-carrier protein] reductase	identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830 3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-[acyl-carrier protein] reductase	ACETYL-COENZYME A CARBOXYLASE SUBUNIT A	3-oxoacyl-[acyl-carrier protein] reductase	3-oxoacyl-[acyl-carrier protein] reductase	identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830 3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-(acyl-carrier-protein) reductase	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme 3-oxoacyl-[acyl-carrier-protein] reductase	3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-[acyl-carrier-protein] reductase	3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-(Acyl-carrier-protein) reductase	3-ketoacyl-acyl carrier protein reductase	3-oxoacyl-(Acyl-carrier protein) reductase	3-oxoacyl-(Acyl-carrier-protein) reductase	3-oxoacyl-(Acyl-carrier-protein) reductase	3-oxoacyl-[acyl-carrier-protein] reductase	3-oxoacyl-(acyl-carrier-protein) reductase identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830	3-oxoacyl-(acyl-carrier-protein) reductase TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR KEGG: ppu:PP_1914 3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-[acyl-carrier protein] reductase	3-oxoacyl-(Acyl-carrier protein) reductase	3-ketoacyl-acyl carrier protein reductase High confidence in function and specificity	3-oxoacyl-(acyl-carrier-protein) reductase identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01830	3-oxoacyl-[acyl-carrier protein] reductase	3-oxoacyl-(Acyl-carrier-protein) reductase	3-oxoacyl-(acyl-carrier-protein) reductase identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830	3-oxoacyl-(Acyl-carrier protein) reductase	
HELPY00546	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	Residues 1 to 71 of 71 are 100 pct identical to residues 1 to 71 of a 71 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289640.1 30S ribosomal subunit protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	conserved gene 30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030 ribosomal protein S21	30S ribosomal protein S21	IPR001911: Ribosomal protein S21 30S ribosomal protein S21	similar to Salmonella typhi CT18 30S ribosomal subunit protein S21 30S ribosomal subunit protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type s : structure 30S ribosomal protein S21	30S ribosomal protein S21	SSU ribosomal protein S21P	Similar to: HI0531, RS21_HAEIN 30S ribosomal protein S21	Ribosomal protein S21 RpsU protein	
HELPY00547	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00548	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00549	Putative uncharacterized protein	putative inner membrane protein	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Putative	Similar to: HI0219, YKGB_HAEIN conserved hypothetical protein	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1541 SWALL:Q8A7I3 (EMBL:AE016932) (193 aa) fasta scores: E(): 5.5e-68, 90.67% id in 193 aa, and to Escherichia coli O6 hypothetical protein Ykgb Ykgb or C0418 SWALL:Q8FKK0 (EMBL:AE016756) (200 aa) fasta scores: E(): 1.1e-30, 51.07% id in 186 aa, and to Salmonella typhimurium putative inner membrane protein STM0566 SWALL:Q8ZR55 (EMBL:AE008722) (186 aa) fasta scores: E(): 1.4e-30, 50.27% id in 185 aa putative transmembrane protein	Putative inner membrane protein	Code: S; COG: COG3059 conserved hypothetical protein	protein of unknown function DUF417	Putative membrane protein	hypothetical protein	Putative uncharacterized protein ykgB	conserved hypothetical protein	conserved hypothetical protein similar to HP0565 High confidence in function and specificity	conserved hypothetical protein identified by match to protein family HMM PF04224	protein of unknown function DUF417 PFAM: protein of unknown function DUF417 KEGG: aba:Acid345_3718 protein of unknown function DUF417	conserved hypothetical protein identified by similarity to GB:AAN78899.1; match to protein family HMM PF04224	Hypothetical protein	putative membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized conserved protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved inner membrane protein	Putative membrane protein	
HELPY00550	Diaminopimelate epimerase	diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	CDS_ID OB2354 diaminopimelate epimerase	Putative diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Residues 1 to 275 of 275 are 99 pct identical to residues 1 to 275 of a 275 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290438.1 diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	conserved gene diaminopimelate epimerase	Diaminopimelate epimerase	diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	
HELPY00551	UPF0118 membrane protein HP_0567	PUTATIVE TRANSMEMBRANE PROTEIN	Putative permease	Predicted permease	Conserved putative permease protein	hypothetical membrane protein, conserved, DUF20 family	identified by match to protein family HMM PF01594 membrane protein, putative	UPF0118 membrane protein Rv1101c/MT1133	Mb1131c, -, len: 342 aa. Equivalent to 3' end of Rv1101c, len: 385 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 342 aa overlap).  Conserved membrane protein, shows some similarity to other bacterial proteins e.g. P77406|PERM_ECOLI PUTATIVE PERMEASE PERM from Escherichia coli (353 aa), FASTA scores: opt: 287, E(): 8.8e-12, (24.9% identity in 349 aa overlap). REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, a frameshift due to a single base deletion (t-*) leads to a shorter product with a different amino part compared to its homolog in Mycobacterium tuberculosis strain H37Rv. CONSERVED MEMBRANE PROTEIN	Putative uncharacterized protein	similar to BRA0460, membrane protein, hypothetical hypothetical membrane protein	Hypothetical UPF0118 protein JHP0514	COG0628 predicted permease	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1471 SWALL:Q8A7Q3 (EMBL:AE016932) (341 aa) fasta scores: E(): 4.6e-98, 78.55% id in 331 aa, and to Vibrio parahaemolyticus putative permease vp2476 SWALL:Q87LY2 (EMBL:AP005081) (361 aa) fasta scores: E(): 2.9e-22, 28.77% id in 344 aa, and to Methanosarcina mazei hypothetical protein Mm2877 SWALL:Q8PT41 (EMBL:AE013538) (347 aa) fasta scores: E(): 2.8e-20, 28.82% id in 340 aa putative transmembrane protein	Membrane protein, putative	Similar to Q9I0I7 Hypothetical protein PA2651 from Pseudomonas aeruginosa (352 aa). FASTA: opt: 382 Z-score: 397.1 E(): 3.2e-14 Smith-Waterman score: 382; 26.686 identity in 341 aa overlap ORF ftt0501c conserved hypothetical membrane protein	Predicted permease PerM family	Hypothetical membrane protein, conserved, DUF20 family	identified by match to protein family HMM PF01594 membrane protein, putative	identified by match to protein family HMM PF01594 membrane protein, putative	Protein of unknown function UPF0118	Protein of unknown function UPF0118	conserved hypothetical protein	Protein of unknown function UPF0118	putative membrane protein	membrane protein, putative	Protein of unknown function UPF0118	protein of unknown function UPF0118	Putative uncharacterized protein	
HELPY00552	Putative uncharacterized protein	Putative	conserved hypothetical protein; possible molybdenum cofactor biosynthesis enzyme	Radical SAM	hypothetical protein	radical SAM	conserved hypothetical protein, authentic frameshift identified by match to protein family HMM PF04055	conserved hypothetical protein possible molybdenum cofactor biosynthesis enzyme	Molybdenum cofactor biosynthesis protein	Radical SAM domain protein	Putative uncharacterized protein	Putative cofactor modifying protein	Putative uncharacterized protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Putative uncharacterized protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM	Radical SAM	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Radical SAM domain protein PFAM: Radical SAM domain protein; KEGG: cbk:CLL_A1020 radical SAM	Radical SAM domain protein	
HELPY00553	GTP-binding protein	hypothetical protein	hypothetical conserved protein	Putative GTP-binding protein	Putative GTP-binding protein	GTP-binding protein YchF	Putative ATP/GTP binding protein	GTP-binding protein	GTP-BINDING PROTEIN	Putative GTPase translation factor	Putative GTP-binding protein	GTP-binding protein	Putative ABC transport system ATP-binding protein	GTP-dependent nucleic acid-binding protein engD	CDS_ID OB3480 GTP-binding protein	GTP-BINDING PROTEIN	similar to AE002533-6|AAF42173.1| percent identity: 55 in 361 aa putative GTP-binding protein	Putative uncharacterized protein	probable GTP-binding protein	GTP-binding protein YchF	Probable GTP-binding protein	GTP-binding protein, probable translation factor	Putative GTP-binding protein	Predicted GTPase, YYAF B.subtilis ortholog	Putative uncharacterized protein	GTP-binding protein	GTP-dependent nucleic acid-binding protein engD	Conserved GTPase	GTP-binding protein YchF	
HELPY00554	Cytosol aminopeptidase	leucyl aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Cytosol aminopeptidase	AMINOPEPTIDASE	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Cytosol aminopeptidase	SC5F7.22, probable aminopeptidase, len: 517aa; similar to SW:AMPA_ECOLI aminopeptidase from Escherichia coli (503 aa) fasta scores; opt: 844, z-score: 868.2, E(): 0, (34.7% identity in 522 aa overlap). Contains Pfam match to entry PF00883 Peptidase_M17, Cytosol aminopeptidase family and Prosite match to PS00631 Cytosol aminopeptidase signature. putative aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Cytosol aminopeptidase	Probable cytosol aminopeptidase	Residues 1 to 503 of 503 are 99 pct identical to residues 1 to 503 of a 503 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290893.1 aminopeptidase A-I	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Cytosol aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	PepB	Probable cytosol aminopeptidase	Similar to leucine aminopeptidase hypothetical protein	conserved gene aminopeptidase A/I	Similar to leucine aminopeptidase hypothetical protein	
HELPY00555	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	DedA	Putative integral membrane protein	hypothetical protein	Putative uncharacterized protein	Residues 1 to 204 of 204 are 99 pct identical to residues 1 to 204 of a 204 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288713.1 orf, conserved hypothetical protein	YqjA protein	Similar to hypothetical protein DedA hypothetical protein	Similar to hypothetical protein DedA hypothetical protein	DedA protein	identified by match to protein family HMM PF00597 DedA family protein	Putative inner membrane protein	Putative uncharacterized protein ysbD	Putative uncharacterized protein	Putative	DedA-family integral membrane protein	Similar to: HI1629, YG29_HAEIN uncharacterized membrane-associated protein	DedA family protein	DedA family protein	ortholog to Escherichia coli bnum: b3095; MultiFun: Cell structure 6.1 putative membrane protein	identified by match to protein family HMM PF00597 DedA family protein	Best Blastp Hit: pir||B81823 DedA-family integral membrane protein NMA1948 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380580|emb|CAB85168.1| (AL162757) DedA-family integral membrane protein [Neisseria meningitidis] COG0586 Uncharacterized membrane-associated conserved hypothetical protein	Code: S; COG: COG0586 conserved hypothetical protein	Code: S; COG: COG0586 conserved hypothetical protein	DedA	DedA family	DedA	putative DedA family transmembrane protein	
HELPY00556	Adenine phosphoribosyltransferase	adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	CDS_ID OB2025 adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	similar to AX064737-1|CAC25608.1| percent identity: 79 in 175 aa adenine phosphoribosyltransferase	adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	SCL2.04c, apt, adenine phosphoribosiltransferase, len: 182 aa; identical to previously sequenced SW:APT_STRCO (EMBL:X87267) Streptomyces coelicolor adenine phosphoribosyltransferase (EC 2.4.2.7) Apt, 182 aa and highly smilar to SW:APT_ECOLI (EMBL:M14040) Escherichia coli adenine phosphoribosyltransferase (EC 2.4.2.7) Apt, 183 aa; fasta scores: opt: 600 z-score: 682.8 E(): 1.2e-30; 54.8% identity in 168 aa overlap. Contains Pfam match to entry PF00156 Pribosyltran, Phosphoribosyl transferase domain and match to Prosite entry PS00103 Purine/pyrimidine phosphoribosyl transferases signature adenine phosphoribosiltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	Residues 8 to 201 of 201 are 98 pct identical to residues 1 to 194 of a 194 aa protein from Escherichia coli gb: AAB40223.1 adenine phosphoribosyltransferase	Adenine phosphoribosyltransferase	
HELPY00557	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Protein-export membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00558	Galactosidase acetyltransferase	ribose 5-phosphate epimerase	ribose 5-phosphate isomerase	Putative ribose 5-phosphate isomerase	Sugar isomerase	Ribose 5-phosphate and galactose-6-phosphate isomerase	Ribose 5-phosphate isomerase	Putative ribose/galactose isomerase	RIBOSE-5-PHOSPHATE ISOMERASE	similar to AL583922-47|CAC30434.1| percent identity: 78 in 155 aa putative sugar phosphate isomerase	Ribose 5-phosphate isomerase B	Ribose 5-phosphate isomerase, RpiB	Ribose 5-phosphate epimerase	Ribose 5-phosphate isomerase	Sugar-phosphate isomerase, RpiB/LacA/LacB family	SC8E4.02c, probable sugar-phosphate isomerase, len: 159 aa; similar to TR:O53192 (EMBL:AL021246) Mycobacterium tuberculosis putative isomerase MTV008.21c, 162 aa; fasta scores: opt: 665 z-score: 811.6 E(): 0; 62.1% identity in 153 aa overlap and to SW:RPIB_ECOLI (EMBL:X82203) Escherichia coli ribose 5-phosphate isomerase B (EC 5.3.1.6) (phosphoriboisomerase B) RpiB, 149 aa; fasta scores: opt: 294 z-score: 366.6 E(): 5.2e-13; 37.5% identity in 144 aa overlap putative sugar-phosphate isomerase	Ribose 5-phosphate isomerase B	Putative sugar phosphate isomerase RP299	Ribose 5-phosphate isomerase B	RpiB	conserved hypothetical protein	Galactoside O-acetyltransferase	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 ribose 5-phosphate isomerase B	Ribose 5-phosphate isomerase, RpiB	identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689 ribose 5-phosphate isomerase B	Ribose-5-phosphate isomerase B	Ribose-5-phosphate isomerase B	Mb2492c, -, len: 162 aa. Equivalent to Rv2465c, len: 162 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 162 aa overlap). Probable isomerase (EC 5.-.-.-), equivalent to AAK46840|MT2540 PUTATIVE CARBOHYDRATE-PHOSPHATE ISOMERASE from Mycobacterium tuberculosis strain CDC1551 (159 aa). Equivalent to Q9CBY1|ML1484 POSSIBLE PHOSPHOPENTOSE ISOMERASE from M.  leprae (162 aa), FASTA scores: opt: 992, E(): 7.1e-59, (89.5% identity in 162 aa overlap). Also highly similar or similar to several diverse isomerases e.g.  Q9L206|SC8E4.02c PUTATIVE ISOMERASE from Streptomyces coelicolor (159 aa), FASTA scores: opt: 661, E(): 6.1e-37, (61.45% identity in 153 aa overlap); P47636|Y396_MYCGE|MG396 HYPOTHETICAL LACA/RPIB FAMILY PROTEIN from Mycoplasma genitalium (152 aa), FASTA scores: opt: 357, E(): 8.2e-17, (42% identity in 150 aa overlap); P53527|Y396_MYCPN|MPN595|MP247 HYPOTHETICAL LACA/RPIB FAMILY PROTEIN from Mycoplasma pneumoniae (152 aa), FASTA scores: opt: 340, E(): 1.1e-15, (38.6% identity in 145 aa overlap); P26592|LACB_STAAU galactose-6-phosphate isomerase from Staphylococcus aureus (171 aa), FASTA scores: opt: 296, E(): 1e-12, (35.4% identity in 158 aa overlap) and P37351|RPIB_ECOLI ribose 5-phosphate isomerase b from Escherichia coli (149 aa), FASTA scores: opt: 262, E(): 1.6e-10, (32.2% identity in 146 aa overlap); etc. COULD BELONG TO THE LACA/RPIB FAMILY. PROBABLE ISOMERASE	ribose 5-phosphate epimerase (pentose phosphate); Biological Process: carbohydrate metabolism (GO:0005975) Ribose/galactose isomerase	
HELPY00559	Conserved hypothetical membrane protein	Peptidase, M50 family	Membrane endopeptidase, M50 family	Protease	Zn-dependent protease	Lin2708 protein	Putative integral membrane transmembrane protein	Putative peptidase m50; transmembrane protein	hypothetical protein	conserved gene transmembrane protein	hypothetical protein	Probable integral membrane protein	putative membrane-associated Zn-dependent protease; Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis and peptidolysis (GO:0006508) Peptidase M50	Putative uncharacterized protein TTHA0833	Putative	Conserved hypothetical integral membrane protein	identified by similarity to OMNI:NTL01LI2690; match to protein family HMM PF02163 membrane protein, putative	Putative uncharacterized protein	Similiar to CAD85637 (Q82TY8) Putative integral membrane transmembrane protein from Nitrosomonas europaea (221 aa). FASTA: 670 Z-score: 817.1 E(): 1.2e-37 50.226identity in 221 aa overlap ORF ftt1341 Membrane protein	conserved hypothetical protein	Zn-dependent protease	membrane protein; possible metalloprotease	Peptidase M50	Peptidase M50	Best Blastp Hit: pir||B81049 conserved hypothetical protein NMB1731 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226986|gb|AAF42076.1| (AE002523) conserved hypothetical protein [Neisseria meningitidis MC58] COG1994 Zn-dependent proteases conserved hypothetical protein	peptidase M50	identified by match to protein family HMM PF02163 peptidase, M50 family	Peptidase M50	Zn-dependent proteases	
HELPY00560	Signal peptidase I	signal peptidase I	Signal peptidase I	Signal peptidase I	identified by similarity to SP:P00803; match to protein family HMM PF00461 signal peptidase I	Signal peptidase I	Signal peptidase I	Signal peptidase I	similar to BR0660, signal peptidase I signal peptidase I	Signal peptidase I	Signal peptidase I	signal peptidase I	Signal peptidase I	Signal peptidase I	Signal peptidase I	SPase I signal peptidase I	signal peptidase I	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 signal peptidase I	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 signal peptidase I	Signal peptidase I	Bacterial signal peptidase S26A:Signal peptidase	Peptidase S26A, signal peptidase I	Signal peptidase I	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 6311837; Product type e : enzyme signal peptidase I (SPase I) (Leader peptidase I)	Signal peptidase I. Serine peptidase. MEROPS family S26A	Peptidase S26A, signal peptidase I	signal peptidase I identified by similarity to GB:AAM22228.1; match to protein family HMM PF00717; match to protein family HMM TIGR02227	Peptidase S26A, signal peptidase I	Peptidase S26A, signal peptidase I	
HELPY00561	Bifunctional protein folD	methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase	methylenetetrahydrofolate dehydrogenase ; methenyltetrahydrofolate cyclohydrolase	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	CDS_ID OB1880; methenyltetrahydrofolate cyclohydrolase methylenetetrahydrofolate dehydrogenase (NADP+)	Bifunctional protein folD	similar to AX064403-1|CAC25442.1| percent identity: 96 in 284 aa putative methylenetetrahydrofolate dehydrogenase(NADP+)/methenyltetrahydrofolate cyclohydrolase	Bifunctional protein folD	methylenetetrahydrofolate dehydrogenase	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	
HELPY00562	Putative uncharacterized protein	Phosphoglycerol transferase related protein	Alkaline phosphatase superfamily protein	phosphoglycerol transferase	Putative uncharacterized protein	Putative	Similar to Bacteroides thetaiotaomicron putative sulfatase BT1853 SWALL:Q8A6M4 (EMBL:AE016933) (585 aa) fasta scores: E(): 5.8e-170, 69.79% id in 586 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2021 SWALL:AAQ66988 (EMBL:AE017179) (643 aa) fasta scores: E(): 3.1e-78, 38.82% id in 595 aa putative membrane attached sulfatase protein	conserved hypothetical protein	identified by match to protein family HMM PF00884 sulfatase family protein	Sulfatase	Sulfatase	sulfatase	Sulfatase	Sulfatase	hypothetical protein	phosphoglycerol transferase	Alkaline phosphatase inner membrane protein	Phosphoglycerol transferase related protein, alkaline phosphatase superfamily	conserved hypothetical protein; possible sulfatase	Alkaline phosphatase inner membrane protein	conserved hypothetical protein Probable phosphoglycerol transferase Specificity unclear	membrane protein, alkaline phosphatase superfamily	Phosphoglycerol transferase related protein, alkaline phosphatase superfamily	Sulfatase	Sulfatase	Sulfatase	Putative sulfatase	Putative uncharacterized protein	sulfatase PFAM: sulfatase KEGG: pen:PSEEN1677 sulfatase	
HELPY00563	Putative uncharacterized protein	hypothetical protein	hypothetical protein predicted by Glimmer/Critica hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00564	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Similar to Q885D8 BNR/Asp-box repeat protein from Pseudomonas syringae (432 aa). FASTA: opt: 536 Z-score: 654.4 E(): 1.5e-28 Smith-Waterman score: 536; 31.922 identity in 307 aa overlap ORF ftt0399c BNR/Asp-box repeat protein	BNR/Asp-box repeat protein	Glycosyl hydrolase, BNR repeat	hypothetical protein	BNR/Asp-box repeat protein Similar to Q885D8 BNR/Asp-box repeat protein from Pseudomonas syringae (432 aa). FASTA: opt: 536 Z-score: 654.4 E(): 1.5e-28 Smith-Waterman score: 536; 31.922 identity in 307 aa overlap ORF ftt0399c	predicted neuraminidase (sialidase) Predicted neuraminidase (sialidase) Function unclear	conserved hypothetical secreted protein 40% GH_BNR. Pfam:PF02012; BNR; 2. TMHelix:1. Signal peptide: present. Function unclear	Possible neuraminidase	BNR/Asp-box repeat protein	BNR/Asp-box repeat protein	Hypothetical protein	Putative neuraminidase with BNR/Asp-box repeat	BNR/Asp-box repeat protein precursor	BNR/Asp-box repeat protein	Putative uncharacterized protein	BNR/Asp-box repeat protein precursor	Putative uncharacterized protein	Neuraminidase	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00565	Dihydroorotase	Dihydroorotase	Dihydroorotase	Dihydroorotase	Dihydroorotase	Dihydroorotase	Residues 1 to 348 of 348 are 99 pct identical to residues 1 to 348 of a 348 aa protein from Escherichia coli K12 ref: NP_415580.1 dihydro-orotase	Dihydroorotase	Dihydroorotase	Dihydroorotase	Dihydroorotase	Dihydroorotase	Similar to dihydroorotase, homodimeric type hypothetical protein	conserved gene dihydroorotase, homodimeric type	Similar to dihydroorotase, homodimeric type hypothetical protein	identified by similarity to SP:P05020; match to protein family HMM PF01979; match to protein family HMM TIGR00856 dihydroorotase, homodimeric type	Dihydroorotase	Dihydroorotase	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00856 dihydroorotase, homodimeric type	Dihydroorotase	IPR002195: Dihydroorotase dihydro-orotase	similar to Salmonella typhi CT18 dihydroorotase dihydroorotase	Dihydroorotase	Dihydroorotase	Dihydroorotase	Putative dihydroorotase	Dihydroorotase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme dihydroorotase	Dihydroorotase	
HELPY00566	Putative uncharacterized protein	Hypothetical protein	putative siderophore-mediated iron transport protein	conserved hypothetical protein putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Siderophore-mediated iron transport protein	
HELPY00567	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00568	Flagellar switch protein	identified by similarity to SP:Q03593; match to protein family HMM PF01052 flagellar switch protein FliN	Flagellar motor switch protein FliN	Putative FLAGELLAR MOTOR SWITCH PROTEIN	Flagellar motor switch protein FliN	surface presentation of antigens (SPOA) protein	Flagellar motor switch FliN	Flagellar motor switch FliN	Surface presentation of antigens (SPOA) protein	Surface presentation of antigens (SPOA) protein	Flagellar motor switch FliN	Flagellar motor switch FliN	flagellar switch protein	Flagellar motor switch protein FliN	Flagellar motor switch FliN	Flagellar motor switch/type III secretory pathway protein	flagellar motor switch protein FliN identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480	flagellar motor switch protein Flagellar motor switch protein Function unclear	flagellar motor switch protein FliN TIGRFAM: flagellar motor switch protein FliN PFAM: surface presentation of antigens (SPOA) protein KEGG: gsu:GSU0422 flagellar motor switch protein FliN	flagellar motor switch protein FliN TIGRFAM: flagellar motor switch protein FliN PFAM: surface presentation of antigens (SPOA) protein KEGG: sdn:Sden_1334 flagellar motor switch FliN	putative flagellar motor switch protein	flagellar switch protein FliN identified by match to protein family HMM PF01052	Flagellar motor switch protein	Flagellar motor switch protein	Flagellar switch protein FliN	KEGG: slo:Shew_1374 flagellar motor switch protein FliN flagellar motor switch protein FliN	Flagellar motor switch protein	Flagellar motor switch protein FliN	Flagellar motor switch protein FliN precursor	
HELPY00569	Endonuclease III	endonuclease III	endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)	Putative endonuclease III	Putative endonuclease III	Endonuclease III	Putative endonuclease III	ENDONUCLEASE III	Putative endonuclease III	Endonuclease III	Endonuclease III	Endonuclease III; specific for apurinic and/or apyrimidinic sites	CDS_ID OB1757; DNA repair protein endonuclease III	similar to AL583925-21|CAC31817.1| percent identity: 66 in 240 aa putative endonuclease III	endonuclease III	Endonuclease III	Probable endonuclease III	Endonuclease III	Endonuclease III DNA-(Apurinic or apyrimidinic site) lyase	Predicted endonuclease, gene nth	Endonuclease III	Endonuclease III	SCH17.03c, probable endonuclease, len: 250 aa; similar to many e.g. SW:UVEN_MICLU (EMBL:U22181), pdg, Micrococcus luteus ultraviolet N-glycosylase/AP lyase (279 aa), fasta scores; opt: 1012 z-score: 970.1 E(): 0, 61.3% identity in 261 aa overlap. Weakly similar to SCE94.06, mutY (EMBL:AL049628) S.coelicolor putative adenine glycosylase (308 aa) (30.3% identity in 201 aa overlap), differing at C-terminus. Contains Pfam match to entry PF00730 Endonuclease_3, Endonuclease III, PS01155 Endonuclease III family signature1 and PS00764 Endonuclease III iron-sulfur binding region signature putative endonuclease	Predicted EndoIII-related endonuclease	Endonuclease III	Endonuclease III	Probable endonuclease III	Endonuclease III	Endonuclease III	
HELPY00570	Uncharacterized protein HP_0585.1	hypothetical protein	ferrous iron transport protein A Ferrous iron transport protein A High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	Ferrous iron transport protein A	
HELPY00571	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00572	Aminodeoxychorismate lyase	Residues 1 to 340 of 340 are 99 pct identical to residues 1 to 340 of a 340 aa protein from Escherichia coli K12 ref: NP_415615.1 putative thymidylate kinase	DUF175	Putative aminodeoxychorismate lyase protein	Putative uncharacterized protein	identified by similarity to GB:AAP78169.1; match to protein family HMM PF02618 conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	IPR003770: Protein of unknown function DUF175 putative periplasmic solute-binding protein	similar to Salmonella typhi CT18 putative secreted protein putative secreted protein	Putative uncharacterized protein pabC	Putative	Putative periplasmic protein	hypothetical protein	Predicted periplasmic solute-binding protein Hypothetical protein	Putative periplasmic solute-binding protein	conserved hypothetical protein	identified by similarity to OMNI:VC2017; match to protein family HMM PF02618; match to protein family HMM TIGR00247 conserved hypothetical protein TIGR00247	Aminodeoxychorismate lyase	Code: R; COG: COG1559 putative thymidylate kinase	Code: R; COG: COG1559 putative thymidylate kinase	putative exported protein	Aminodeoxychorismate lyase	Aminodeoxychorismate lyase	Aminodeoxychorismate lyase	Code: R; COG: COG1559 putative thymidylate kinase	putative membrane protein	Putative uncharacterized protein	Aminodeoxychorismate lyase precursor	Hypothetical protein	
HELPY00573	Ferrodoxin-like protein	OorD subunit of 2-oxoglutarate:acceptor oxidoreductase	SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE	2-oxoglutarate ferredoxin oxidoreductase, delta subunit	2-oxoglutarate oxidoreductase OorD subunit	OorD subunit of 2-oxoglutarate:acceptor oxidoreductase identified by match to protein family HMM PF00037	2-oxoglutarate ferredoxin oxidoreductase, delta subunit NADH-ubiquinone oxidoreductase 23 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I-28.5KD) (CI-28.5KD) High confidence in function and specificity	2-oxoglutarate:acceptor oxidoreductase, delta subunit identified by match to protein family HMM PF00037	2-oxoglutarate ferredoxin oxidoreductase, delta subunit	2-oxoglutarate ferredoxin oxidoreductase, delta subunit	2-oxoglutarate:acceptor oxidoreductase, delta subunit	2-oxoglutarate:acceptor oxidoreductase, delta subunit	OorD subunit of 2-oxoglutarate:acceptor oxidoreductase	OorD subunit of 2-oxoglutarate:acceptor oxidoreductase	OorD subunit of 2-oxoglutarate:acceptor oxidoreductase	OorD subunit of 2-oxoglutarate:acceptor oxidoreductase	2-oxoglutarate-acceptor oxidoreductase subunit OorD	2-oxoglutarate oxidoreductase OorD subunit	OorD subunit of 2-oxoglutarate:acceptor oxidoreductase	2-oxoglutarate:acceptor oxidoreductase, OorD subunit	2-oxoglutarate oxidoreductase OorD subunit	2-oxoglutarate oxidoreductase OorD ferrodoxin subunit	4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pjd:Pjdr2_5464 4Fe-4S ferredoxin iron-sulfur binding domain protein	
HELPY00574	Ferredoxin oxidoreductase, alpha subunit	identified by similarity to GP:2935179; match to protein family HMM PF01855 2-oxoglutarate:acceptor oxidoreductase, alpha subunit	OorA subunit of 2-oxoglutarate:acceptor oxidoreductase	SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE	Putative 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Pyruvate flavodoxin/ferredoxin oxidoreductase-like	KorA deleted EC_number 1.2.7.9 2-oxoglutarate:ferredoxin oxidoreductase, subunit A; COG0674, pfam01855	pyruvate flavodoxin/ferredoxin oxidoreductase-like	2-oxoglutarate ferredoxin oxidoreductase, alpha subunit	pyruvate flavodoxin/ferredoxin oxidoreductase-like	Pyruvate flavodoxin/ferredoxin oxidoreductase-like	2-oxoglutarate oxidoreductase OorA subunit	2-oxoglutarate synthase	pyruvate flavodoxin/ferredoxin oxidoreductase-like	pyruvate flavodoxin/ferredoxin oxidoreductase-like	2-oxoglutarate synthase subunit	OorA subunit of 2-oxoglutarate:acceptor oxidoreductase identified by match to protein family HMM PF01855	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein KEGG: btk:BT9727_3515 pyruvate ferredoxin oxidoreductase, alpha subunit	pyruvate ferredoxin oxidoreductase, alpha subunit, putative	2-oxoglutarate ferredoxin oxidoreductase, alpha subunit 2-oxoglutarate synthase subunit korA (EC 1.2.7.3) (2-ketoglutarate oxidoreductase alpha chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase alpha subunit) High confidence in function and specificity	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein KEGG: rpc:RPC_0695 pyruvate flavodoxin/ferredoxin oxidoreductase-like	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein KEGG: gme:Gmet_1362 2-oxoglutarate ferredoxin oxidoreductase	Pyruvate flavodoxin/ferredoxin oxidoreductase-like	2-oxoglutarate:acceptor oxidoreductase, alpha subunit identified by match to protein family HMM PF01855	pyruvate flavodoxin/ferredoxin oxidoreductase-like	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	2-oxoglutarate synthase alpha subunit	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein precursor	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	
HELPY00575	Ferredoxin oxidoreductase, beta subunit	identified by similarity to GP:2935180; match to protein family HMM PF02775 2-oxoglutarate:acceptor oxidoreductase, beta subunit	OorB subunit of 2-oxoglutarate:acceptor oxidoreductase	SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE	Putative 2-oxoacid:ferredoxin oxidoreductase, beta subunit	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	KorB deleted EC_number 1.2.7.9 2-oxoglutarate:ferredoxin oxidoreductase, subunit B; COG1013, pfam02775	thiamine pyrophosphate enzyme-like TPP-binding	2-oxoglutarate ferredoxin oxidoreductase, beta subunit	2-oxoglutarate synthase, beta subunit	thiamine pyrophosphate enzyme-like TPP-binding	2-oxoglutarate ferredoxin oxidoreductase, beta subunit	2-oxoglutarate oxidoreductase OorB subunit	2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate	thiamine pyrophosphate enzyme-like TPP-binding	2-oxoglutarate synthase subunit	thiamine pyrophosphate enzyme domain protein TPP-binding PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding KEGG: aba:Acid345_1809 thiamine pyrophosphate enzyme-like TPP-binding	Pyruvate:ferredoxin oxidoreductase and related 2- oxoacid:ferredoxin oxidoreductase, beta subunit	OorB subunit of 2-oxoglutarate:acceptor oxidoreductase identified by match to protein family HMM PF02775	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding KEGG: pai:PAE1558 2-oxoacid ferredoxin oxidoreductase beta subunit	pyruvate ferredoxin oxidoreductase, beta subunit, putative	2-oxoglutarate ferredoxin oxidoreductase, beta subunit 2-oxoglutarate synthase subunit korB (EC 1.2.7.3) (2-ketoglutarate oxidoreductase beta chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase beta subunit) High confidence in function and specificity	thiamine pyrophosphate enzyme domain protein TPP-binding PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding KEGG: gme:Gmet_1363 ferrodoxin oxidoreductase beta subunit	Thiamine pyrophosphate enzyme	2-oxoglutarate:acceptor oxidoreductase, beta subunit identified by match to protein family HMM PF02775	Hypothetical protein	thiamine pyrophosphate enzyme	Thiamine pyrophosphate enzyme domain protein TPP- binding	Thiamine pyrophosphate enzyme domain protein TPP- binding	
HELPY00576	Ferredoxin oxidoreductase, gamma subunit	identified by similarity to GP:2935181; match to protein family HMM PF01558 2-oxoglutarate:acceptor oxidoreductase, gamma subunit	OorC subunit of 2-oxoglutarate:acceptor oxidoreductase	SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE	Putative 2-oxoacid:ferredoxin oxidoreductase, gamma subunit	Pyruvate ferredoxin/flavodoxin oxidoreductase	KorC deleted EC_number 1.2.7.9 2-oxoglutarate:ferredoxin oxidoreductase, subunit C; COG1014, pfam01558	pyruvate ferredoxin/flavodoxin oxidoreductase	2-oxoglutarate ferredoxin oxidoreductase, gamma subunit	2-oxoacid--acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate	Pyruvate ferredoxin/flavodoxin oxidoreductase	2-oxoglutarate oxidoreductase OorC subunit	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate	pyruvate ferredoxin/flavodoxin oxidoreductase	pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit	pyruvate ferredoxin/flavodoxin oxidoreductase PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase KEGG: aba:Acid345_1808 2-oxoacid--acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate	OorC subunit of 2-oxoglutarate:acceptor oxidoreductase identified by match to protein family HMM PF01558	pyruvate ferredoxin oxidoreductase, gamma subunit, putative	Indolepyruvate ferredoxin oxidoreductase PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase KEGG: mbu:Mbur_1132 pyruvate ferredoxin/flavodoxin oxidoreductase	2-oxoglutarate ferredoxin oxidoreductase, gamma subunit 2-oxoglutarate synthase subunit korC (EC 1.2.7.3) (2-ketoglutarate oxidoreductase gamma chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase gamma subunit) High confidence in function and specificity	pyruvate ferredoxin/flavodoxin oxidoreductase PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase KEGG: rpc:RPC_0697 pyruvate ferredoxin/flavodoxin oxidoreductase	pyruvate ferredoxin/flavodoxin oxidoreductase PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase KEGG: gsu:GSU1470 keto/oxoacid ferredoxin oxidoreductase, gamma subunit	2-oxoglutarate:acceptor oxidoreductase, gamma subunit identified by match to protein family HMM PF01558	Hypothetical protein	pyruvate ferredoxin/flavodoxin oxidoreductase	Pyruvate ferredoxin/flavodoxin oxidoreductase	Pyruvate/ketoisovalerate oxidoreductase, gamma subunit	2-oxoglutarate ferredoxin oxidoreductase, gamma subunit	2-oxoglutarate ferredoxin oxidoreductase, gamma subunit, KorC	
HELPY00577	Type III restriction enzyme R protein	Similar to O25314 Type III restriction enzyme R protein from Helicobacter pylori (1001 aa). FASTA: opt: 1491 Z-score: 1485.7 E(): 6.6e-75 Smith-Waterman score: 2480; 42.828 identity in 990 aa overlap ORF ftt1579c Type III restriction enzyme	Type III restriction enzyme Similar to O25314 Type III restriction enzyme R protein from Helicobacter pylori (1001 aa). FASTA: opt: 1491 Z-score: 1485.7 E(): 6.6e-75 Smith-Waterman score: 2480; 42.828 identity in 990 aa overlap ORF ftt1579c	type III restriction enzyme, res subunit PFAM: type III restriction enzyme, res subunit KEGG: bur:Bcep18194_A3212 type III restriction enzyme, res subunit	type III restriction enzyme R protein High confidence in function and specificity	Type III site-specific deoxyribonuclease	Type III restriction enzyme	restriction endonuclease	Putative type III restriction-modification system endonuclease protein	Type III restriction enzyme, res subunit	Type III restriction enzyme	Restriction endonuclease	Type III restriction protein res subunit	Type III restriction enzyme	Type III restriction enzyme	Type IIIR-M system restriction enzyme	Type III R-M system restriction enzyme	Putative type III restriction enzyme R protein	
HELPY00578	Adenine specific DNA methyltransferase	Type III DNA modification methyltransferase	IPR001091: Site-specific DNA-methyltransferase (cytosine-N4-specific); IPR001917: Aminotransferase, class-II; IPR002052: N-6 Adenine-specific DNA methylase;IPR002295: N6 adenine-specific DNA methyltransferase, D21 class DNA methylase; restriction system	similar to Salmonella typhi CT18 type III restriction-modification system StyLTI enzyme mod type III restriction-modification system StyLTI enzyme mod	TYPE III DNA MODIFICATION ENZYME	Similar to Moraxella catarrhalis type III restriction-modification system methyltransferase Mod SWALL:Q93LB8 (EMBL:AY049056) (636 aa) fasta scores: E(): 5.1e-87, 41.46% id in 615 aa, and to Salmonella typhimurium type III restriction-modification system Stylti enzyme Mod or STM0357 SWALL:T3MO_SALTY (SWALL:P40814) (652 aa) fasta scores: E(): 5.1e-49, 35.47% id in 513 aa, and to Salmonella typhi type III restriction-modification system Stylti enzyme Mod or STY0388 or t2507 SWALL:AAO70094 (EMBL:AL627266) (652 aa) fasta scores: E(): 1.2e-48, 35.28% id in 513 aa putative modification enzyme of type III restriction-modification system	Similar to Q9XBI6 Type III restriction-modification system enzyme Mod from Bacillus cereus (669 aa). FASTA: opt: 825 Z-score: 875.5 E(): 6.5e-41 Smith-Waterman score: 856; 35.728identity in 515 aa overlap. Contains frameshifts after aa 175 and 387. Truncation at C-terminal according to FASTA hits ORF ftt1582c pseudo Type III restriction-modification system,pseudogene	Type III restriction-modification system StyLTI enzyme mod	identified by sequence similarity; putative; ORF located using Blastx; COG2189 putative type III restriction-modification system: methylase	identified by similarity to SP:P40814 type III restriction-modification system, methylase subunit	Site-specific DNA-methyltransferase (adenine-specific)	adenine specific DNA methylase	Site-specific DNA-methyltransferase (adenine-specific)	Site-specific DNA-methyltransferase	DNA methylase N-4/N-6	type III DNA modification methyltransferase identified by match to protein family HMM PF01555	type III R-M system modification enzyme	Type III restriction-modification system methyltransferase	Site-specific DNA-methyltransferase	type III restriction-modification system, Mod subunit identified by match to protein family HMM PF01555	pseudo Type III restriction-modification system,pseudogene Similar to Q9XBI6 Type III restriction-modification system enzyme Mod from Bacillus cereus (669 aa). FASTA: opt: 825 Z-score: 875.5 E(): 6.5e-41 Smith-Waterman score: 856; 35.728identity in 515 aa overlap. Contains frameshifts after aa 175 and 387. Truncation at C-terminal according to FASTA hits ORF ftt1582c	type III restriction-modification system methylation subunit	Site-specific DNA-methyltransferase (adenine-specific) PFAM: DNA methylase N-4/N-6 domain protein KEGG: bur:Bcep18194_A3213 site-specific DNA-methyltransferase (adenine-specific)	Site-specific DNA-methyltransferase (adenine-specific) PFAM: DNA methylase N-4/N-6 domain protein KEGG: bpm:BURPS1710b_0259 type III DNA modification methyltransferase	Site-specific DNA-methyltransferase	DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6 domain protein KEGG: xft:PD0833 methyltransferase, type III restriction-modification system	Site-specific DNA-methyltransferase (adenine-specific) PFAM: DNA methylase N-4/N-6 domain protein KEGG: noc:Noc_2928 site-specific DNA-methyltransferase (adenine-specific)	Site-specific DNA-methyltransferase (adenine-specific) PFAM: DNA methylase N-4/N-6 domain protein KEGG: bcn:Bcen_0042 site-specific DNA-methyltransferase (adenine-specific)	adenine specific DNA methylase Type III restriction-modification system EcoPI enzyme mod (EC 2.1.1.72) (EcoPI methyltransferase) (M.EcoPI) High confidence in function and specificity	
HELPY00579	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	hypothetical protein identified by Glimmer2; putative	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00580	Putative uncharacterized protein	Putative	Disulphide bond formation protein DsbB	DsbB-like protein	disulfide bond formation protein, DsbB family identified by match to protein family HMM PF02600	conserved hypothetical protein hypothetical protein	disulfide bond formation protein, DsbB family identified by match to protein family HMM PF02600	Disulphide bond formation protein DsbB	Disulphide bond formation protein DsbB	Disulfide bond formation protein, DsbB family	PFAM: Disulphide bond formation protein DsbB KEGG: shm:Shewmr7_0287 disulphide bond formation protein DsbB Disulphide bond formation protein DsbB	Putative ATP/GTP binding protein	Disulfide bond formation protein, DsbB family	Disulphide bond formation protein DsbB precursor	DsbB-like protein	DsbB-like protein	Disulfide bond formation protein, DsbB family	Dsbb-like protein	Putative disulfide oxidoreductase B (DsbB-like protein); putative membrane protein	DsbB family disulfide bond formation protein	

HELPY00581	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Region start changed from 1224117 to 1224225 (108 bases)	Tumor necrosis factor alpha-inducing protein	Putative uncharacterized protein	Tumor necrosis factor alpha-inducing protein	
HELPY00582	Penicillin-binding protein 1A	Similar to peptidoglycan synthetase; penicillin-binding protein 1A hypothetical protein	conserved gene penicillin binding protein 1A	Similar to peptidoglycan synthetase; penicillin-binding protein 1A hypothetical protein	Peptidoglycan glycosyltransferase	similar to BR0117, penicillin-binding protein, 1A family penicillin-binding protein, 1A family	PENICILLIN-BINDING PROTEIN	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative penicillin binding protein (PonA)	penicillin-binding protein; COG5009 membrane carboxypeptidase	multimodular transpeptidase-transglycosylase PBP 1A	penicillin-binding protein 1A	Penicillin-binding protein 1 (Peptidoglycan synthetase)	identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 penicillin-binding protein	penicillin-binding protein 1A	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 penicillin-binding protein	Peptidoglycan glycosyltransferase	putative penicillin-binding protein	Penicillin-binding protein 1A family	Penicillin-binding protein 1A	Glycosyl transferase, family 51:Penicillin-binding protein, transpeptidase domain:ATP/GTP-binding site motif A (P-loop)	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 penicillin-binding protein, 1A family	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11567017; Product type e : enzyme Murein polymerase, bifunctional murein transglycosylase (N-terminal) and transpeptidase (C-terminal); penicillin-binding protein PBP1A	Penicillin-binding protein 1A	penicillin-binding protein	peptidoglycan glycosyltransferase	Penicillin-binding protein 1A	Membrane carboxypeptidase/penicillin-binding protein COG5009	Penicillin-binding protein 1A	penicillin-binding protein 1A	
HELPY00583	Putative 8-amino-7-oxononanoate synthase/2-amino- 3-ketobutyrate coenzyme A ligase	7-keto-8-aminopelargonic acid synthetase	8-amino-7-oxononanoate synthase	Putative 8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	Putative aminotransferase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	2SCG1.18c, bioF, 8-amino-7-oxononanoate synthase, len: 375 aa; similar to SW:BIOF_BACSH (EMBL:M29291) Bacillus sphaericus 8-amino-7-oxononanoate synthase (EC 2.3.1.47) BioF, 389 aa; fasta scores: opt: 774 z-score: 785.6 E(): 0; 39.1% identity in 379 aa overlap. Contains Pfam match to entry PF00222 aminotran_2, Aminotransferases class-II and match to Prosite entry PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site 8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	Residues 1 to 384 of 384 are 98 pct identical to residues 1 to 384 of a 384 aa protein from uncultured bacterium pCosHE2 gb: AAG60580.1 KAPA synthetase BioF	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	Similar to 8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	conserved gene 8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	identified by match to protein family HMM PF00155; match to protein family HMM PF00222 aminotransferase, class II	7-keto-8-aminopelargonic acid synthetase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	7-keto-8-aminopelargonate synthetase	identified by similarity to SP:P53556; match to protein family HMM PF00155 8-amino-7-oxononanoate synthase	Putative 8-amino-7-oxononanoate synthase/2-amino- 3-ketobutyrate coenzyme A ligase	
HELPY00584	Hemolysin secretion protein	Methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis sensory transducer	hemolysin secretion protein	methyl-accepting chemotaxis protein (MCP) High confidence in function and specificity	methyl-accepting chemotaxis sensory transducer PFAM: chemotaxis sensory transducer KEGG: son:SO1144 methyl-accepting chemotaxis protein	methyl-accepting chemotaxis sensory transducer PFAM: chemotaxis sensory transducer KEGG: son:SO1144 methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis sensory transducer	PFAM: chemotaxis sensory transducer KEGG: son:SO_1144 methyl-accepting chemotaxis protein methyl-accepting chemotaxis sensory transducer	KEGG: vfi:VF0872 methyl-accepting chemotaxis protein methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis protein	Hemolysin secretion protein	Methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis protein	Methyl-accepting chemotaxis transmembrane sensory protein	
HELPY00585	Multidrug resistance protein	Toxin secretion ATP-binding protein	metalloprotease transporter	ABC transporter, ATP-binding protein	SCF41.33, putative ABC transport protein, len: 589 aa. Similar to many e.g. Streptomyces coelicolor TR:Q9ZNB0 (EMBL; AB019513) ABC transporter (584 aa), fasta scores opt: 597 z-score: 649.7 E(): 7.7e-29 30.9% identity in 572 aa overlap. Contains a Pfam match to entry PF00005 ABC_tran, ABC transporter and a PS00017 ATP/GTP-binding site motif A (P-loop). Contains membrane-spanning hydrophobic domains. putative ABC transport protein	ABC-type bacteriocin/lantibiotic exporter	ALKALINE PROTEASE SECRETION ATP-BINDING PROTEIN APRD	Lin2895 protein	Similar to multidrug resistance ABC transporter ATP-binding protein hypothetical protein	similar to multidrug resistance ABC transporter ATP-binding protein hypothetical protein	ABC transporter, ATP-binding protein	ATP-binding/permease fusion ABC transporter	ABC transporter ATP-binding/permease protein	Molecular Function: ATP-binding cassette (ABC) transporter activity (GO:0004009), Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020) ABC transporter	Beta-(1--]2)glucan export ATP-binding/permease protein ndvA	Putative secretion/efflux abc transporter, ATP-binding protein	hypothetical protein, similar to ABC transporter required for expression of cytochrome bd	Similar to rp||aprD sp|Q03024|APRD_PSEAE sp|P23596|PRTD_ERWCH; Ortholog to ERGA_CDS_06490 Alkaline protease secretion ATP-binding protein AprD	identified by match to protein family HMM PF00005; match to protein family HMM PF00664 ABC transporter, ATP-binding/permease protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative transport protein (ABC superfamily, ATP_bind)	multidrug resistance ABC transporter ATP-binding and permease protein	ABC-type long-chain fatty acid transport system, fused permease and ATPase components SbmA protein	ABC transporter, ATP-binding protein/permease protein, putative	lipid/multidrug/protein-type ABC exporter, ATP binding/membrane-spanning protein	identified by similarity to SP:P23886; match to protein family HMM PF00005; match to protein family HMM PF00664 cysteine ABC transporter, ATP-binding/permease protein	Similar to rp||aprD sp|Q03024|APRD_PSEAE sp|P23596|PRTD_ERWCH; Ortholog to ERWE_CDS_06580 Alkaline protease secretion ATP-binding protein AprD	identified by match to protein family HMM PF00005; match to protein family HMM PF00664 ABC transporter, ATP-binding/permease protein	Similar to Escherichia coli transport ATP-binding protein CydC SW:CYDC_ECOLI (P23886) (573 aa) fasta scores: E(): 3.4e-33, 30.195% id in 563 aa, and to Bacillus halodurans ABC transport ATP-binding protein BH3972 TR:Q9K5W5 (EMBL:AP001520) (575 aa) fasta scores: E(): 6.1e-48, 32.491% id in 554 aa ABC transporter ATP-binding protein	Multidrug resistance ABC transporter ATP-binding protein	
HELPY00586	Flagellin A	IPR001029: Flagellin, C-terminal; IPR001492: Flagellin, N-terminal Flagellar synthesis: phase 2 flagellin (filament structural protein)	Flagellin A	Flagellin FliC	flagellin A	flagellin	flagellin A High confidence in function and specificity	flagellin B identified by match to protein family HMM PF00669; match to protein family HMM PF00700; match to protein family HMM PF07196	Hypothetical protein	flagellin domain protein PFAM: flagellin domain protein KEGG: cvi:CV3011 flagellin D	Hypothetical protein	Flagellin protein FliB(S)	Flagellin	Flagellin A	Flagellin domain protein	Putative uncharacterized protein	Flagellin domain protein	Flagellin domain protein	Flagellin A	Flagellin	Flagellin A	Flagellin	Putative uncharacterized protein	flagellin domain-containing protein KEGG: met:M446_5137 flagellin domain-containing protein	Flagellin domain protein	Flagellin	Phase 1 flagellin	Flagellin domain protein	Flagellin A	
HELPY00587	Endonuclease III	Lin0662 protein	Putative endonuclease III	identified by match to protein family HMM PF00730 endonuclease III, putative	Putative endonuclease III	identified by similarity to GP:14325535; match to protein family HMM PF00633; match to protein family HMM PF00730 endonuclease III, putative	3-methyladenine DNA glycosylase	hypothetical protein, similar to endonuclease III	ENDONUCLEASE III	Ortholog of S. aureus MRSA252 (BX571856) SAR0617 putative DNA repair protein	hypothetical protein, similar to endonuclease III	identified by match to protein family HMM PF00730 endonuclease III domain protein	hypothetical protein, similar to endonuclease III	DNA repair protein, HhH-GPD family	Similar to Methanococcus jannaschii hypothetical protein MJ1434 TR:Q58829 (EMBL:U67584) (220 aa) fasta scores: E(): 4.4e-23, 37.198% id in 207 aa, and to Thermotoga maritima putative repair endonuclease TM0382 TR:Q9WYL3 (EMBL:AE001718) (232 aa) fasta scores: E(): 4.8e-17, 35.417% id in 192 aa putative DNA repair protein	DNA repair protein, HhH-GPD family	identified by match to protein family HMM PF00633; match to protein family HMM PF00730 endonuclease III, putative	similar to gi|27467299|ref|NP_763936.1| [Staphylococcus epidermidis ATCC 12228], percent identity 64 in 209 aa, BLASTP E(): 3e-76 putative endonuclease III	endonuclease III	Putative endonuclease	HhH-GPD	putative endonuclease III	probable DNA repair endonuclease	DNA-3-methyladenine glycosylase III	3-methyladenine DNA glycosylase	HhH-GPD	HhH-GPD	endonuclease III, putative	DNA repair protein, HhH-GPD family	
HELPY00588	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00589	Uroporphyrinogen decarboxylase	uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	CDS_ID OB1167 uroporphyrinogen decarboxylase	similar to AX064525-1|CAC25502.1| percent identity: 83 in 374 aa putative uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	SC1C3.19, hemE, uroporphyrinogen decarboxylase, len: 355 aa; highly similar to many e.g. DCUP_ECOLI uroporphyrinogen decarboxylase (EC 4.1.1.37) (354 aa), fasta scores; opt: 879 z-score: 1073.9 E(): 0, 42.3% identity in 345 aa overlap. Contains PS00906 and PS00907 Uroporphyrinogen decarboxylase signatures 1 and 2 uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Residues 1 to 354 of 354 are 99 pct identical to residues 1 to 354 of a 354 aa protein from Escherichia coli K12 ref: NP_418425.1 uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	
HELPY00590	Putative uncharacterized protein	Putative	outer membrane efflux protein, putative	outer-membrane protein of the hefABC efflux system HefA	outer membrane efflux protein PFAM: outer membrane efflux protein KEGG: cte:CT1347 outer membrane efflux protein, putative	Outer membrane protein precursor Function unclear	conserved hypothetical protein, authentic frameshift identified by match to protein family HMM PF02321	Outer membrane efflux protein	Putative outer membrane component of efflux system	Putative outer membrane component of efflux system	Putative uncharacterized protein	Putative outer membrane component of efflux system	Outer membrane efflux protein	outer membrane efflux protein PFAM: outer membrane efflux protein KEGG: plt:Plut_1333 outer membrane efflux protein, putative	Outer membrane efflux protein	Outer-membrane protein of the hefABC efflux system HefA	Outer membrane efflux protein	Outer membrane efflux protein	Outer membrane efflux protein	Outer-membrane protein of the hefABC efflux system	Outer membrane efflux protein	Outer membrane component of efflux system	Outer membrane efflux protein	Outer-membrane protein of the HefABC efflux system HefA	Outer-membrane protein of the hefABC efflux system	
HELPY00591	Membrane fusion protein	identified by similarity to OMNI:HP0606 conserved hypothetical protein	Putative uncharacterized protein	Putative efflux transporter	Putative efflux transporter	membrane fusion protein of the hefABC efflux system HefB	conserved hypothetical protein Probable membrane-fusion protein Function unclear	conserved hypothetical protein	Efflux system, membrane fusion protein	Secretion protein HlyD family protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane fusion component of efflux system	Membrane fusion protein of the hefABC efflux system HefB	Membrane fusion protein of the hefABC efflux system HefB	Membrane fusion protein of the hefABC efflux system HefB	Membrane fusion protein of the hefABC efflux system	Membrane fusion component of efflux system	Membrane fusion protein of the HefABC efflux system HefB	Membrane fusion protein of the hefABC efflux system	
HELPY00592	Acriflavine resistance protein	Putative uncharacterized protein	Putative efflux transporter	cytoplasmic pump protein of the hefABC efflux system HefC	acriflavin resistance protein PFAM: acriflavin resistance protein; outer membrane efflux protein KEGG: gsu:GSU2664 outer membrane efflux protein	Acriflavin resistance protein precursor	cation/multidrug efflux pump protein AcrB/AcrD/AcrF family protein High confidence in function and specificity	RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family identified by match to protein family HMM PF00873	Cation/multidrug efflux pump 10 TMHs	Predicted membrane protein	Efflux transporter, RND superfamily	Putative integral membrane component of efflux system	Outer membrane component of efflux system	Acriflavin resistance protein	Acriflavin resistance protein	Acriflavin resistance protein precursor	Acriflavin resistance protein	Cytoplasmic pump protein of the hefABC efflux system HefC	Cytoplasmic pump protein of the hefABC efflux system	Acriflavin resistance protein	Cytoplasmic pump protein of the HefABC efflux system HefC	Cytoplasmic pump proteins of the hefABC efflux system	acriflavin resistance protein PFAM: acriflavin resistance protein; KEGG: mxa:MXAN_0667 AcrB/AcrD/AcrF family efflux transporter, inner membrane component	
HELPY00593	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	


HELPY00596	Putative uncharacterized protein	ABC transporter, permease	Putative uncharacterized protein	ABC transporter, permease	ABC transporter permease	
HELPY00597	Putative uncharacterized protein	ABC transporter, permease	ABC transporter permease	
HELPY00598	ABC transporter, ATP-binding protein	identified by match to protein family HMM PF00005 ABC transporter, ATP-binding protein	ABC transporter	Molecular Function: ATP-binding cassette (ABC) transporter activity (GO:0004009), Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020) ABC transporter	zinc ABC transporter ATPase protein	Putative abc transporter, ATP-binding protein	Similar to Bacteroides thetaiotaomicron putative ABC transporter ATP-binding protein BT1306 SWALL:Q8A868 (EMBL:AE016931) (282 aa) fasta scores: E(): 1.1e-74, 75.08% id in 281 aa, and to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG1010 SWALL:AAQ66132 (EMBL:AE017175) (275 aa) fasta scores: E(): 3.6e-30, 37.68% id in 268 aa, and to Borrelia burgdorferi ABC transporter, ATP-binding protein bb0573 SWALL:O51520 (EMBL:AE001158) (270 aa) fasta scores: E(): 1.8e-26, 39.54% id in 263 aa putative ATP-binding component of ABC transporter	ABC transporter related	ABC transporter, ATP-binding protein	ABC-type cobalt transport system, ATPase component	Possible ABC transporter component, ATP binding protein	ABC transporter related	ABC transporter related PFAM: ABC transporter related SMART: AAA ATPase KEGG: gsu:GSU1281 cobalt ABC transporter, ATP-binding protein	ABC transporter related PFAM: ABC transporter related SMART: AAA ATPase KEGG: psp:PSPPH_0264 zinc ABC transporter, ATP-binding protein	ABC transporter related	ABC transporter related	ABC transporter related precursor	ABC transporter related precursor	ABC transporter related precursor	ABC transporter, ATP-binding protein	ABC superfamily ATP binding cassette transporter, ABC protein	ABC transporter related	Iron chelate uptake ABC transporter, FeCT family, ATP-binding protein	ABC transporter, ATP-binding protein	Putative abc transporter, ATP-binding protein	ABC-type multidrug transport system, ATPase component	ABC transporter ATP-binding protein	ABC transporter. ATP-binding protein	ABC transporter related	
HELPY00599	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00600	DNA ligase	DNA ligase	DNA ligase (polydeoxyribonucleotide synthase[NAD+])	DNA ligase	DNA ligase, NAD-dependent	DNA ligase	DNA ligase	NAD-DEPENDENT DNA LIGASE	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	CDS_ID OB0760; polydeoxyribonucleotide synthase[NAD+] DNA ligase	DNA ligase	similar to AJ011676-1|CAA09732.1| percent identity: 41 in 673 aa putative DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase, NAD-dependent	SC8D9.06, ligA, probable DNA ligase, len: 735aa; similar to many eg. SW:DNLJ_ECOLI DNA ligase from Escherichia coli (671 aa) fasta scores; opt: 1318, z-score: 1448.0, E(): 0, (41.6% identity in 694 aa overlap). Contains PS01055 NAD-dependent DNA ligase signature 1. Also contains Pfam match to entry PF00533 BRCT, BRCA1 C Terminus (BRCT) domain, score 41.70, E-value 1.7e-08. putative DNA ligase	DNA ligase	DNA ligase	
HELPY00601	Chemotaxis protein	Chemotaxis signal transduction protein CheV	Putative chemotaxis protein	Chemotaxis protein CheV	chemotaxis protein	identified by match to protein family HMM PF00072; match to protein family HMM PF01584 chemotaxis protein CheV	Response regulator receiver:CheW-like protein	Evidence 2b : Function of strongly homologous gene; Product type r : regulator chemotaxis protein	CheW protein	chemotaxis protein	chemotaxis protein Chemotaxis protein cheV High confidence in function and specificity	response regulator receiver modulated CheW protein PFAM: response regulator receiver; CheW domain protein KEGG: vvy:VV0958 chemotaxis signal transduction protein	Response regulator receiver modulated CheW protein	Probable chemotaxis protein	Complete genome, strain B100	Putative two-component response regulator chemotaxis signal transduction protein	Chemotaxis protein	Chemotaxis protein	Response regulator receiver modulated CheW protein	Chemotaxis protein	Chemotaxis protein	Response regulator receiver modulated CheW protein	
HELPY00602	Aspartyl-tRNA synthetase	aspartyl-tRNA synthetase	aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase 2	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	CDS_ID OB2019 aspartyl-tRNA synthetase	ASPARTYL-TRNA SYNTHETASE	similar to Z77724-5|CAB01271.1| percent identity: 71 in 596 aa putative aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	
HELPY00603	Adenylate kinase	adenylate kinase	adenylate kinase	Adenylate kinase	identified by match to protein family HMM PF00406 adenylate kinase	adenylate kinase	Adenylate kinase	Adenylate kinase	COG0563 Adk adenylate kinase and related kinases adenylate kinase	Similar to KAD_PSEAE (Q9HXV4) Adenylate kinase (EC 2.7.4.3) from Pseudomonas aeruginosa (215 aa). FASTA: opt: 855 Z-score: 1026.3 E(): 2.8e-49 Smith-Waterman score: 855; 57.407 identity in 216 aa overlap. adenylate kinase	identified by similarity to GB:CAA82801.1; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351 adenylate kinase	adenylate kinase	Hypothetical adenylate kinase	identified by sequence similarity; putative; ORF located using Blastx; COG0563 adenylate kinase	ortholog to Escherichia coli bnum: b0474; MultiFun: Metabolism 1.5.2.3, 1.7.33; ATP-AMP transphosphorylase adenylate kinase	identified by sequence similarity; putative; ORF located using Blastx; COG0563 adenylate kinase	adenylate kinases	adenylate kinase	Adenylate kinase	Adenylate kinase, subfamily	transcript_id=ENSDNOT00000014105	transcript_id=ENSETET00000000829	Adenylate kinases	Adenylate kinase	adenylate kinase	adenylate kinase identified by similarity to SP:P16304; match to protein family HMM PF00406	adenylate kinase Similar to KAD_PSEAE (Q9HXV4) Adenylate kinase (EC 2.7.4.3) from Pseudomonas aeruginosa (215 aa). FASTA: opt: 855 Z-score: 1026.3 E(): 2.8e-49 Smith-Waterman score: 855; 57.407 identity in 216 aa overlap.	Adenylate kinases	


HELPY00604	Inorganic pyrophosphatase	inorganic pyrophosphatase (pyrophosphate phospho-hydrolase)	Putative inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	similar to AL023093-17|CAA18808.1| percent identity: 62 in 158 aa putative inorganic pyrophosphatase	inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic diphosphatase	SCE9.16, ppa, probable inorganic pyrophosphatase, len: 163 aa; similar to many e.g. SW:IPYR_SULAC (EMBL:X81842), ppa, Sulfolobus acidocaldarius inorganic pyrophosphatase (173 aa), fasta scores; opt: 483 z-score: 617.4 E(): 4.6e-27, 46.4% identity in 166 aa overlap.  Contains Pfam match to entry PF00719 Pyrophosphatase, Inorganic pyrophosphatase, score 163.70, E-value 3e-45 and PS00387 Inorganic pyrophosphatase signature putative inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Residues 14 to 189 of 189 are 99 pct identical to residues 1 to 176 of a 176 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290858.1 inorganic pyrophosphatase	Inorganic pyrophosphatase	

HELPY00605	MutS2 protein	glr3637	DNA mismatch repair protein	Putative DNA mismatch repair protein	MutS2 protein	CDS_ID OB2124 DNA mismatch repair protein	MutS2 protein	MutS2 protein	MutS2 protein	MutS2 protein	MutS2 protein	MutS2 protein	MutS2 protein	MutS2 protein	Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.; identified by similarity to EGAD:107719; match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069 MutS2 family protein	DNA mismatch repair protein MutS	DNA mismatch repair protein MutS	DNA mismatch repair protein	MutS2 protein	Mismatch repair ATPase	identified by similarity to SP:O51125; match to protein family HMM PF01713; match to protein family HMM TIGR01069 DNA mismatch repair protein	DNA mismatch repair, Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: maintenance of fidelity during DNA-dependent DNA replication (GO:0045005) DNA mismatch repair protein MutSB	DNA mismatch repair protein, MutS family	MutS mismatch repair protein	MutS2 protein	DNA mismatch repair protein MutS	Mismatch repair ATPase MutS	MutS2 protein	MutS-like protein	
HELPY00606	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00607	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetyl muramate-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	CDS_ID OB2231 UDP-N-acetylmuramate-alanine ligase	similar to Z95388-22|CAB08641.1| percent identity: 51 in 488 aa UDP-N-acetylmuramate--alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	SC9B1.07, murC, possible UDP-N-acetylmuramoyl-L-alanine ligase, len: 485 aa; similar to many e.g. SW:MURC_ECOLI UDP-N-acetylmuramoyl-L-alanine ligase from Escherichia coli (491 aa) fasta scores; opt: 750, z-score: 785.9, E(): 0, (40.4% identity in 463 aa overlap). putative UDP-N-acetylmuramoyl-L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--alanine ligase	UDP-N-acetylmuramate-alanine ligase	Residues 1 to 491 of 491 are 99 pct identical to residues 1 to 491 of a 491 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285787.1 UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme	
HELPY00608	Solute-binding signature and mitochondrial signature protein	Putative N-succinyldiaminopimelate aminotransferase	Aminotransferase	Aminotransferases class-I	Probable succinyldiaminopimelate aminotransferase protein	truncated putative aspartate aminotransferase, truncated	Putative uncharacterized protein	Putative uncharacterized protein	AMINOTRANSFERASE	Aminotransferase, class I	Aminotransferase, class I	Aminotransferases class-I	succinyldiaminopimelate aminotransferase	identified by match to protein family HMM PF00155 aminotransferase, classes I and II	Aminotransferase, class I and II	aminotransferase, class I and II	Aminotransferase, class I and II	N-succinyl-L,L-diaminopimelate aminotransferase	N-succinyldiaminopimelate aminotransferase	Aminotransferase, class I and II	aminotransferase, class I and II	aminotransferase, class I and II	aminotransferase, class I and II	Aminotransferase	Aminotransferase, class I and II	Aminotransferase, class I and II	Aspartate/tyrosine/aromatic aminotransferase COG0436	Aminotransferase, class I and II	aminotransferase, class I and II	
HELPY00609	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	similar to AL355913-20|CAB91132.1| percent identity: 78 in 379 aa putative aminoglycoside acetyltransferase negative regulator	smilar to gcpE protein	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	gcpE protein	Residues 1 to 372 of 375 are 99 pct identical to residues 1 to 372 of a 372 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289068.1 orf, conserved hypothetical protein	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	hypothetical protein	identified by similarity to SP:P27433; match to protein family HMM PF04551; match to protein family HMM TIGR00612 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	
HELPY00610	Tetrahydrodipicolinate N-succinyltransferase	Tetrahydrodipicolinate N-succinyltransferase	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative	2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase DapD	Putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase, putative	Probable 2345-tetrahydropyridine-26-dicarboxylate N- succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase). 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	tetrahydrodipicolinate succinylase, putative	tetrahydrodipicolinate N-succinyltransferase (dapD)	tetrahydrodipicolinate succinylase, putative	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative	Tetrahydrodipicolinate N-succinyltransferase COG2171	Tetrahydrodipicolinate N-succinyltransferase	tetrahydrodipicolinate N-succinyltransferase	tetrahydrodipicolinate succinylase, putative	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD	tetrahydrodipicolinate succinylase, putative KEGG: psp:PSPPH_3846 tetrahydrodipicolinate succinylase, putative	hypothetical protein COG family: tetrahydrodipicolinateN- succinyltransferase Orthologue of BL1734	(P41396) 2345-tetrahydropyridine-26-dicarboxylate N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase) Function unclear	putative transferase KEGG: mbo:Mb1233c probable transferase	Tetrahydrodipicolinate succinylase	tetrahydrodipicolinate N-succinyletransferase	putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase KEGG: vpa:VP2380 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	Tetrahydrodipicolinate N-succinyltransferase	

HELPY00612	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative	with TRP repeat, SEL1 subfamily; COG0790 conserved hypothetical protein	cysteine-rich protein F	conserved hypothetical protein Specificity unclear	Sel1 domain and tetratricopeptide repeat-containing protein PFAM: Sel1 domain protein repeat-containing protein KEGG: lpn:lpg1172 TPR repeat protein	Putative uncharacterized protein	Cysteine-rich protein F	Cysteine-rich protein F	Sel1 domain protein repeat-containing protein	Cysteine-rich protein F	jgi|Capca1|179206|estExt_Genewise1Plus.C_4330032	Putative uncharacterized protein	
HELPY00613	Putative uncharacterized protein	Putative	Hypothetical protein	hypothetical protein	Putative uncharacterized protein	protein of unknown function DUF1524 RloF PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF KEGG: eba:p2A52 hypothetical protein	protein of unknown function DUF262 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF KEGG: cch:Cag_0325 hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00614	Modulator of drug activity	Residues 1 to 193 of 193 are 98 pct identical to residues 1 to 193 of a 193 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289602.1 modulator of drug activity B	Putative modulator of drug activity	Putative nad(P)h dehydrogenase (Quinone); protein	identified by match to protein family HMM PF02525 flavodoxin-like fold domain protein	Molecular Function: NAD(P)H dehydrogenase (quinone) activity (GO:0003955), Biological Process: electron transport (GO:0006118) NAD(P)H dehydrogenase	IPR003680: NAD(P)H dehydrogenase (quinone) NADPH specific quinone oxidoreductase (drug modulator)	similar to Salmonella typhimurium NADPH specific quinone oxidoreductase (drug modulator) NADPH specific quinone oxidoreductase (drug modulator)	Putative modulator of drug activity MdaB	Putative	Putative modulator of drug activity	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme modulator of drug activity, similar to electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase	Similar to: HI0648, MDAB_HAEIN putative NADPH-quinone reductase, modulator of drug activity B	Oxidoreductase, putative	Similar to P40717 Modulator of drug activity B from Escherichia coli (193 aa). FASTA: opt: 900 Z-score: 1129.6 E(): 4.5e-55 Smith-Waterman score: 900; 63.542 identity in 192 aa overlap. modulator of drug activity B	NADPH specific quinone oxidoreductase	Putative oxidoreductase	NAD(P)H dehydrogenase (quinone); possible modulator of drug activity B	identified by similarity to PIR:F64598; match to protein family HMM PF02525 NAD(P)H quinone dehydrogenase MdaB	identified by similarity to PIR:F64598; match to protein family HMM PF02525 NAD(P)H dehydrogenase, quinone family	Best Blastp Hit: pir||D81979 hypothetical protein NMA0600 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379335|emb|CAB83890.1| (AL162753) hypothetical protein NMA0600 [Neisseria meningitidis] COG2249 Putative NADPH-quinone reductase, YabF; MdaB putative modulator of drug activity	Code: R; COG: COG2249 modulator of drug activity B	Code: R; COG: COG2249 modulator of drug activity B	NAD(P)H dehydrogenase (quinone)	NAD(P)H dehydrogenase (quinone)	putative NADPH-quinone reductase (modulator of drug activity B) COG2249	Code: R; COG: COG2249 modulator of drug activity B	NAD(P)H dehydrogenase (quinone) PFAM: NAD(P)H dehydrogenase (quinone): (7.1e-32) KEGG: dde:Dde_1618 flavodoxin-like fold domain protein, ev=1e-61, 57% identity	Putative modulator of drug activity	
HELPY00615	Quinone-reactive Ni/Fe hydrogenase, small subunit	Hydrogenase small chain	identified by similarity to SP:P31884; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409 quinone-reactive Ni/Fe-hydrogenase, small subunit	Ni/Fe hydrogenases beta subunit	Hydrogenase, small subunit	Nickel-iron hydrogenase, small subunit	Ni, Fe-hydrogenase I small subunit HyaA protein	Ni,Fe-hydrogenase I small subunit	F420-nonreducing hydrogenase	hydrogenase protein small subunit	Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway signal	Ni-Fe hydrogenase, small subunit	hydrogenase (NiFe) small subunit (hydA)	Ni-Fe hydrogenase, small subunit	Ni-Fe hydrogenase, small subunit	hydrogenase (NiFe) small subunit (hydA)	Ni-Fe hydrogenase, small subunit	Hydrogenase (NiFe) small subunit HydA	quinone-reactive Ni/Fe hydrogenase HydA	hydrogenase-1 small subunit	hydrogenase (NiFe) small subunit (hydA)	Hydrogenase (NiFe) small subunit HydA	hydrogenase (NiFe) small subunit (hydA)	hydrogenase (NiFe) small subunit HydA KEGG: plt:Plut_1446 Ni-Fe hydrogenase, small subunit TIGRFAM: hydrogenase (NiFe) small subunit HydA PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein	hydrogenase (NiFe) small subunit HydA KEGG: aba:Acid345_4237 hydrogenase (NiFe) small subunit (HydA) TIGRFAM: hydrogenase (NiFe) small subunit HydA PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein	hydrogenase (NiFe) small subunit (hydA)	Ni,Fe-hydrogenase I small subunit	quinone-reactive Ni/Fe-hydrogenase small chain identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409	hydrogenase (NiFe) small subunit HydA KEGG: rsp:RSP_0495 hydrogenase protein small subunit TIGRFAM: hydrogenase (NiFe) small subunit HydA PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein	
HELPY00616	Quinone-reactive Ni/Fe hydrogenase, large subunit	Hydrogenase large chain	Periplasmic hydrogenase large subunit, dehydrogenase	Residues 1 to 597 of 597 are 100 pct identical to residues 1 to 597 of a 597 aa protein from Escherichia coli K12 ref: NP_415492.1 hydrogenase-1 large subunit	identified by similarity to SP:P31883; match to protein family HMM PF00374 quinone-reactive Ni/Fe-hydrogenase, large subunit	similar to Escherichia coli K12 hydrogenase-1 large subunit hydrogenase-1 large subunit	Ni/Fe hydrogenase alpha subunit	Hydrogenase, large subunit	NiFe hydrogenase large subunit	Putative hydrogenase-1 large subunit	Ni,Fe-hydrogenase I large subunit	Code: C; COG: COG0374 hydrogenase-1 large subunit	Citation: Gomelsky,M. and Kaplan,S.Microbiology 141, 1805-1819.1995. hydrogenase protein large subunit	Code: C; COG: COG0374 hydrogenase 1 large subunit	Ni-Fe hydrogenase large chain	nickel-dependent hydrogenase, large subunit	Nickel-dependent hydrogenase, large subunit	Code: C; COG: COG0374 hydrogenase-1 large subunit	Nickel-dependent hydrogenase, large subunit	nickel-dependent hydrogenase, large subunit	hydrogenase large chain	Hydrogenase-1 large chain	Nickel-dependent hydrogenase, large subunit	quinone-reactive Ni/Fe hydrogenase HydB	hydrogenase-1 large subunit	Nickel-dependent hydrogenase, large subunit	Hup-type Ni,Fe-hydrogenase large subunit similarity to COG0374 Ni,Fe-hydrogenase I large subunit(Evalue: 0)	nickel-dependent hydrogenase, large subunit	Nickel-dependent hydrogenase, large subunit	
HELPY00617	Quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit	Ni/Fe-hydrogenase 1 B-type cytochrome subunit	Residues 1 to 235 of 235 are 99 pct identical to residues 1 to 235 of a 235 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286911.1 probable Ni-Fe-hydrogenase 1 b-type cytochrome subunit	identified by similarity to SP:P31875; match to protein family HMM PF01292 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit	IPR000516: Nickel-dependent hydrogenase b-type cytochrome subunit putative Ni/Fe-hydrogenase 1 b-type cytochrome subunit	similar to Salmonella typhi Ty2 Ni/Fe-hydrogenase 1 b-type cytochrome subunit HyaC2 Ni/Fe-hydrogenase 1 b-type cytochrome subunit HyaC2	Ni/Fe hydrogenase cytochrome b subunit	Hydrogenase, cytochrome subunit	Cytochrome b-like protein	Putative Ni/Fe-hydrogenase 1 b-type cytochrome subunit	Ni,Fe-hydrogenase I cytochrome b subunit	Nickel-dependent hydrogenase b-type cytochrome subunit	Ni, Fe hydrogenase I cytochrome b subunit	Code: C; COG: COG1969 probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit	Nickel-dependent hydrogenase b-type cytochrome subunit	Nickel-dependent hydrogenase b-type cytochrome subunit	Code: C; COG: COG1969 probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit	Nickel-dependent hydrogenase b-type cytochrome subunit	Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit	Ni/Fe-hydrogenase, b-type cytochrome subunit	quinone-reactive Ni/Fe hydrogenase HydC	Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit	Nickel-dependent hydrogenase b-type cytochrome subunit	Ni/Fe-hydrogenase, b-type cytochrome subunit	Nickel-dependent hydrogenase b-type cytochrome subunit	Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit	Ni/Fe-hydrogenase, b-type cytochrome subunit TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit PFAM: cytochrome B561 KEGG: plt:Plut_1448 nickel-dependent hydrogenase b-type cytochrome subunit	Ni/Fe-hydrogenase, b-type cytochrome subunit TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit PFAM: cytochrome B561 KEGG: aeh:Mlg_2027 Ni/Fe-hydrogenase, b-type cytochrome subunit	Ni/Fe-hydrogenase, b-type cytochrome subunit	
HELPY00618	Quinone-reactive Ni/Fe hydrogenase	identified by similarity to SP:P37182; match to protein family HMM PF01750; match to protein family HMM TIGR00072 hydrogenase maturation protease HydD	Hydrogenase formation/expression protease HyaD/HupD	Hydrogenase expression/formation protein	Ni, Fe-hydrogenase maturation factor HyaD protein	identified by similarity to SP:P37182; match to protein family HMM TIGR00072 hydrogenase maturation protease	Peptidase M52, hydrogen uptake protein:Peptidase M52, hydrogenase expression/formation protein:Peptidase M52, hydrogenase maturation peptidase	putative Ni/Fe hydrogenase maturation protease	identified by similarity to SP:P37182; match to protein family HMM PF01750; match to protein family HMM TIGR00072 hydrogenase maturation protease	hydrogenase expression/formation protein	Peptidase M52, hydrogenase maturation peptidase	Peptidase M52, hydrogenase expression/formation protein	peptidase M52, hydrogen uptake protein	Peptidase M52, hydrogen uptake protein	Hydrogenase expression/formation protein	quinone-reactive Ni/Fe hydrogenase HydD	Peptidase M52, hydrogen uptake protein	Ni,Fe-hydrogenase maturation factor similarity to COG0680 Ni,Fe-hydrogenase maturation factor(Evalue: 4E-25)	Hydrogenase maturation protease	hydrogenase expression/formation protein	hydrogenase maturation protease TIGRFAM: hydrogenase maturation protease PFAM: peptidase M52, hydrogen uptake protein KEGG: plt:Plut_1449 peptidase M52, hydrogen uptake protein	Ni,Fe-hydrogenase maturation factor	hydrogenase maturation protease HydD identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072	hydrogenase maturation protease TIGRFAM: hydrogenase maturation protease PFAM: peptidase M52, hydrogen uptake protein KEGG: eci:UTI89_C3415 hydrogenase 2 maturation protease	putative coenzyme F420-nonreducing hydrogenase, subunit D (maturation factor)	hydrogenase expression/formation protein High confidence in function and specificity	hydrogenase expression/formation protein hupD Hydrogenase expression/formation protein hupD, 54% identity,(63% simialrity) to SwissProt:Q03004. Aliases: hoxM(SwissProt:P40591), hyaD(E.coli). Has PF01750:Hydrogenase maturation protease;The family consists of hydrogenase maturation proteases. In E. coli HypI the hydrogenase maturation protease is involved in processing of HypE the large subunit of hydrogenases 3, by cleavage of its C-terminal. IPR000671:Peptidase_M52; TIGR00072; hydrog_prot; Signal P reporting SIgnal peptide Present. No TMH present. High confidence in function and specificity	hydrogenase expression/formation protein identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141	hydrogenase expression/formation protein TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein PFAM: peptidase M52, hydrogen uptake protein KEGG: shm:Shewmr7_2158 hydrogenase expression/formation protein	
HELPY00619	Putative uncharacterized protein	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein putative hydE protein High confidence in function and specificity	hypothetical protein identified by Glimmer2; putative	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein hydE	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00620	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00621	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00622	Outer membrane protein	outer membrane protein HopH	Outer membrane protein HopH	Outer membrane protein	Outer membrane protein HopH	
HELPY00623	7-cyano-7-deazaguanine synthase	aluminum resistance protein	Queuosine biosynthesis protein queC	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	hypothetical protein	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	Residues 1 to 231 of 231 are 99 pct identical to residues 1 to 231 of a 231 aa protein from Escherichia coli K12 ref: NP_414978.1 orf, conserved hypothetical protein	Queuosine biosynthesis protein queC	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	identified by match to protein family HMM TIGR00364 exsB protein	7-cyano-7-deazaguanine synthase	conserved hypothetical protein	Hypothetical protein SE0487	Queuosine (Q) synthesis Queuosine (Q) synthesis protein QueC	aluminum resistance protein	IPR001518: Argininosuccinate synthase putative (aluminum) resistance protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	conserved hypothetical protein	Putative	Queuosine biosynthesis protein queC	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0765 conserved hypothetical protein	conserved hypothetical protein	
HELPY00624	Poly(A) polymerase	CCA-adding enzyme	POLYNUCLEOTIDE ADENYLYLTRANSFERASE	Polynucleotide adenylyltransferase	tRNA nucleotidyltransferase	polyA polymerase/tRNA nucleotidyltransferase family protein identified by similarity to SP:P42977; match to protein family HMM PF01743	poly(A) polymerase	polyA polymerase family protein identified by match to protein family HMM PF01743	TRNA nucleotidyltransferase	Polynucleotide adenylyltransferase	poly(A) polymerase (Q9UTQ0) Probable tRNA nucleotidyltransferase (EC 2.7.7.19, EC 2.7.7.25) (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme)papS,pcnB High confidence in function and specificity	Poly A polymerase family protein	tRNA adenylyltransferase	PolyA polymerase family protein	PolyA polymerase family protein	TRNA adenylyltransferase	PolyA polymerase family protein	PolyA polymerase family protein	Polynucleotide adenylyltransferase region	Poly(A) polymerase	tRNA nucleotidyltransferase/poly(A) polymerase family protein	tRNA nucleotidyltransferase/poly(A) polymerase family protein	Poly(A) polymerase	tRNA nucleotidyltransferase	Poly(A) polymerase	tRNA nucleotidyltransferase	tRNA adenylyltransferase	Poly(A) polymerase	Polynucleotide adenylyltransferase	

HELPY00626	NAD(P)H-flavin oxidoreductase	CDS_ID OB3126; P NAD(P)H nitroreductase	NAD(P)H-flavin oxidoreductase	Putative NAD(P)H nitroreductase SAV2523	identified by match to protein family HMM PF00881 NAD(P)H-flavin oxidoreductase	nitroreductase	NAD(P)H-flavin oxidoreductase	Nitroreductase family protein	identified by match to protein family HMM PF00881 nitroreductase family protein	Biological Process: electron transport (GO:0006118), Molecular Function: oxidoreductase activity (GO:0016491) NADH-dependent nitro/flavin oxidoreductase	hypothetical protein, similar to NAD(P)H-flavin oxidoreductase	Putative Oxidoreductase	Putative NAD(P)H-flavin oxidoreductase	Ortholog of S. aureus MRSA252 (BX571856) SAR2603 nitroreductase family protein	hypothetical protein, similar to NAD(P)H-flavin oxidoreductase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme oxygen-insensitive NADPH nitroreductase	Similar to: HI1278, YC78_HAEIN putative NAD(P)H nitroreductase	Oxygen-insensitive NAD(P)H nitroreductase	Nitroreductase	identified by match to protein family HMM PF00881 nitroreductase family protein	NAD(P)H nitroreductase	nitroreductase family; possible NAD(P)H-flavin oxidoreductase	NAD(P)H-flavin oxidoreductase	Similar to Vibrio fischeri major NAD(P)H-flavin oxidoreductase SW:FRA1_VIBFI (P46072) (217 aa) fasta scores: E(): 3.8e-15, 31.81% id in 220 aa, and to Bacillus subtilis putative NAD(P)H-flavin oxidoreductase YfkO SW:YFKO_BACSU (O34475) (221 aa) fasta scores: E(): 1.3e-46, 54.5% id in 222 aa. Contains a nonsense mutation (ochre) after codon 92 pseudo nitroreductase family protein (pseudogene)	Best Blastp Hit: pir||C81155 NAD(P)H nitroreductase, probable NMB0804 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226038|gb|AAF41217.1| (AE002434) NAD(P)H nitroreductase, putative [Neisseria meningitidis MC58] COG0778 Nitroreductase family proteins putative oxidoreductase, NAD(P)H-flavin	identified by match to protein family HMM PF00881 NAD(P)H-flavin oxidoreductase	similar to gi|27468991|ref|NP_765628.1| [Staphylococcus epidermidis ATCC 12228], percent identity 72 in 220 aa, BLASTP E(): 1e-90 putative flavin oxidoreductase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme Major NAD(P)H-flavin oxidoreductase	NAD(P)H-flavin oxidoreductase identified by match to protein family HMM PF00881	
HELPY00627	GlutamylGlutaminyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464 glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase 2	GlutamylGlutaminyl-tRNA synthetase	glutamyl-tRNA synthetase	Glutamate--tRNA(Gln) ligase	glutamyl-tRNA synthetase	glutamyl-tRNA synthetase identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464	glutamyl-tRNA synthetase (Q9ZLJ1) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1.-) (GluGlnRS) (Glutamyl-tRNA synthetase 2) (Glutamate--tRNA ligase 2) (GluRS 2) High confidence in function and specificity	glutamyl-tRNA synthetase identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	transcript_id=ENSMICT00000007748	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	GltX	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamate--tRNA ligase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	transcript_id=ENSTTRT00000005250	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Probable glutamyl-tRNA synthetase, mitochondrial Precursor (EC 6.1.1.17)(Glutamate--tRNA ligase)(GluRS) [Source:UniProtKB/Swiss-Prot;Acc:Q5JPH6]	
HELPY00628	Conserved hypothetical integral membrane protein	Integral membrane protein	identified by similarity to OMNI:NTL01HP00585; match to protein family HMM PF02325 YGGT family protein	Putative uncharacterized protein	Putative	Integral membrane protein	best blastp match gb|AAK34312.1| (AE006585) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	integral membrane protein	Conserved hypothetical membrane protein	protein of unknown function YGGT	Integral membrane protein	Putative uncharacterized protein	Integral membrane protein	integral membrane protein	conserved hypothetical integral membrane protein	predicted integral membrane protein	hypothetical membrane protein	Integral membrane protein	yggt family protein identified by match to protein family HMM PF02325	membrane protein, putative	conserved hypothetical integral membrane protein Function unclear	Protein of unknown function YGGT	YGGT family protein identified by match to protein family HMM PF02325	Hypothetical protein	protein of unknown function YGGT PFAM: protein of unknown function YGGT KEGG: dde:Dde_2172 hypothetical protein	Putative membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	YGGT family protein	
HELPY00629	Soluble lytic murein transglycosylase	Putative uncharacterized protein	LYTIC MUREIN TRANSGLYCOSYLASE	soluble lytic murein transglycosylase	soluble lytic murein transglycosylase, putative identified by match to protein family HMM PF01464	lytic murein transglycosylase High confidence in function and specificity	soluble lytic murein transglycosylase, putative identified by match to protein family HMM PF01464	Soluble lytic murein transglycosylase	Putative soluble lytic murein transglycosylase	Soluble lytic murein transglycosylase, putative	Soluble lytic murein transglycosylase	Putative soluble lytic murein transglycosylase	Putative soluble lytic murein transglycosylase	Soluble lytic murein transglycosylase	Soluble lytic murein transglycosylase	Soluble lytic murein transglycosylase, SLT family	Soluble lytic murein transglycosylase	Putative soluble lytic murein transglycosylase	
HELPY00630	UDP-glucose pyrophosphorylase	Putative UTP-glucose-1-phosphate uridylyltransferase	UTP-glucose-1-phosphate uridylyltransferase	Putative urydyltransferase	CDS_ID OB2930 UTP-glucose-1-phosphate uridylyltransferase	UTP-glucose-1-phosphate uridylyltransferase	UDP-glucose pyrophosphorylase	Lin1070 protein	UTP-glucose-1-phosphate uridylyltransferase	GalU protein	Probable utp--glucose-1-phosphate uridylyltransferase udp-glucose pyrophosphorylase protein	UTP--glucose-1-phosphate uridylyltransferase	UTP-glucose-1-phosphate uridylyltransferase	UTP-glucose-1-phosphate uridylyltransferase	identified by similarity to GP:1628575; match to protein family HMM PF00483; match to protein family HMM TIGR01099 UTP-glucose-1-phosphate uridylyltransferase	GalU	PROBABLE UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALU	Mb1020, galU, len: 306 aa. Equivalent to Rv0993, len: 306 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 306 aa overlap). Probable galU, UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), equivalent to AL035500|MLCL373_22 putative UTP-glucose-1-phosphate uridylyltransferase from Mycobacterium leprae (306 aa), FASTA score: (89.7% identity in 302 aa overlap). Also highly similar to others e.g. AB59678.1|AL132674 UTP-glucose-1-phosphate uridylyltransferase from Streptomyces coelicolor (303 aa); NP_244519.1|NC_002570 UTP-glucose-1-phosphate uridylyltransferase from Bacillus halodurans (297 aa); P25520|GALU_ECOLI|B1236|Z2012|ECS17 UTP--glucose-1-phosphate uridylyltransferase from Escherichia coli strains K12 and O157:H7 (301 aa), FASTA scores: opt: 624, E(): 2.4e-33, (38.8% identity in 299 aa overlap); etc. BELONGS TO THE PROKARYOTIC UDPGP FAMILY. PROBABLE UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE GALU (UDP-GLUCOSE PYROPHOSPHORYLASE) (UDPGP) (ALPHA-D-GLUCOSYL-1-PHOSPHATE URIDYLYLTRANSFERASE) (URIDINE DIPHOSPHOGLUCOSE PYROPHOSPHORYLASE)	Molecular Function: UTP-glucose-1-phosphate uridylyltransferase activity (GO:0003983), Biological Process: UDP-glucose metabolism (GO:0006011) UTP--glucose-1-phosphate uridylyltransferase YngB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UTP-glucose-1-phosphate uridylyltransferase	UTP-glucose-1-phosphate uridylyltransferase	glucose-1-phosphate uridylyltransferase	similar to Salmonella typhi CT18 glucose-1-phosphate uridylyltransferase glucose-1-phosphate uridylyltransferase	UTP-glucose-1-phosphate uridylyltransferase	Putative uncharacterized protein gbs0441	UTP-glucose-1-phosphate uridylyltransferase	UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE	identified by match to PFAM protein family HMM PF00483 UTP-glucose-1-phosphate uridylyltransferase	UTP-glucose-1-phosphate uridylyltransferase	
HELPY00631	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00632	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	CDS_ID OB2972 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	similar to AJ295297-1|CAC20647.1| percent identity: 69 in 416 aa putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Residues 1 to 419 of 419 are 100 pct identical to residues 1 to 419 of a 419 aa protein from Escherichia coli K12 ref: NP_417656.1 first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	
HELPY00633	Aspartate ammonia-lyase	aspartate ammonia-lyase; aspartase	Aspartate ammonia-lyase	Aspartate ammonia-lyase	Aspartate ammonia-lyase	Aspartate ammonia-lyase	similar to AX063841-1|CAC25162.1| percent identity: 83 in 507 aa aspartate ammonia-lyase	Aspartate ammonia-lyase, putative	Aspartate ammonia-lyase	Aspartate ammonia-lyase	Aspartate ammonia-lyase	Aspartate ammonia-lyase	Residues 1 to 478 of 478 are 100 pct identical to residues 16 to 493 of a 493 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290772.1 aspartate ammonia-lyase (aspartase)	Aspartate ammonia-lyase	AspA protein	Aspartate ammonia-lyase	Aspartate ammonia-lyase	Aspartate ammonia-lyase	identified by match to protein family HMM PF00206; match to protein family HMM TIGR00839 aspartate ammonia-lyase	Aspartate ammonia-lyase	InterProMatches:IPR000362; Molecular Function: catalytic activity (GO:0003824) L-aspartase	aspartate ammonia-lyase	IPR000362: Fumarate lyase; IPR003031: Delta crystallin aspartate ammonia-lyase (aspartase)	similar to Salmonella typhi CT18 aspartate ammonia-lyase aspartate ammonia-lyase	Fumarase	Aspartate ammonia-lyase	Aspartate ammonia-lyase	Putative aspartate ammonia-lyase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme aspartate ammonia-lyase (aspartase)	
HELPY00634	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein (P32849) DNA repair protein RAD5 Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00635	Fucosyltransferase	
HELPY00636	Phosphoserine phosphatase	Putative phosphoserine phosphatase	PHOSPHOSERINE PHOSPHATASE	Putative phosphoserine phosphatase	Phosphoserine phosphatase	Putative phosphoserine phosphatase	Phosphoserine phosphatase	Phosphoserine phosphatase	Residues 1 to 322 of 322 are 100 pct identical to residues 1 to 322 of a 322 aa protein from Escherichia coli O157:H7 ref: NP_313373.1 3-phosphoserine phosphatase	Possible serB; phosphoserine phosphatase protein	phosphoserine phosphatase	Putative phosphoserine phosphatase protein	Phosphoserine phosphatase	phosphoserine phosphatase	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 phosphoserine phosphatase SerB	Phosphoserine phosphatase protein	Phosphoserine phosphatase	putative phosphoserine phosphatase	similar to Salmonella typhi CT18 putative hydrolase putative hydrolase	similar to BR1391, phosphoserine phosphatase SerB, phosphoserine phosphatase	Putative uncharacterized protein gbs0605	PHOSPHOSERINE PHOSPHATASE	identified by match to PFAM protein family HMM PF00702 phosphoserine phosphatase SerB	Putative phosphoserine phosphatase	Phosphoserine phosphatase	COG0560 phosphoserine phosphatase	PSP; O-phosphoserine phosphohydrolase; PSPase; Similar to: HI1033, SERB_HAEIN phosphoserine phosphatase	Phosphoserine phosphatase SerB protein	Phosphoserine phosphatase	
HELPY00637	Ferritin	Putative ferritin family protein	Ferritin	Ferritin-like protein Rsg	Ferritin	Putative bacterioferritin	Ferritin-1	similar to AE001770-16|AAD36204.1| percent identity: 37 in 162 aa putative ferritin	Probable ferritin	Ferritin, putative	Ferritin-like protein Rsg	Ferritin	Ferritin-like protein	Ferritin-like protein	Residues 6 to 170 of 170 are 100 pct identical to residues 1 to 165 of a 165 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288340.1 cytoplasmic ferritin (an iron storage protein)	Ferritin	ferritin-like protein	Ferritin	Ftn protein	Putative uncharacterized protein	Nonheme ferritin 1	identified by similarity to EGAD:8114; match to protein family HMM PF00210 ferritin family protein	Ferritin	Ferritin family protein	identified by similarity to SP:P52093; match to protein family HMM PF00210 nonheme iron-containing ferritin	Ferritin family protein	Mb3871, bfrB, len: 181 aa. Equivalent to Rv3841, len: 181 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 181 aa overlap). Possible bfrB, bacterioferritin, similar to other ferritin or hypothetical proteins e.g. O26261|MTH158|RSGA FERRITIN LIKE PROTEIN from Methanothermobacter thermautotrophicus (171 aa), FASTA scores: opt: 277, E(): 6.6e-11, (30.1% identity in 166 aa overlap); Q99SZ3|SA1709 HYPOTHETICAL PROTEIN from Staphylococcus aureus subsp. aureus N315 (166 aa), FASTA scores: opt: 275, E(): 8.7e-11, (33.35% identity in 156 aa overlap); Q9X0L2|TM1128 FERRITIN from Thermotoga maritima (164 aa), FASTA scores: opt: 247, E(): 5.3e-09, (25.65% identity in 156 aa overlap); Q9KDT7|BH1124 FERRITIN from Bacillus halodurans (169 aa), FASTA scores: opt: 246, E(): 6.3e-09, (28.95% identity in 152 aa overlap); O29424|AF0834 PUTATIVE FERRITIN from Archaeoglobus fulgidu (169 aa), FASTA scores: opt: 246, E(): 6.3e-09, (28.95% identity in 152 aa overlap); etc.  Also shows similarity with Rv1876|MTCY180.42|BFRA PROBABLE BACTERIOFERRITIN from Mycobacterium tuberculosis (159 aa).  SEEMS BELONG TO THE BACTERIOFERRITIN FAMILY. POSSIBLE BACTERIOFERRITIN BFRB	ferritin	IPR009040: Ferritin-like cytoplasmic ferritin	
HELPY00638	Putative uncharacterized protein	SCD35.01, unknown, len: >95 aa SCD69.14, conserved hypothetical protein (fragment), len: >358 aa; similar to TR:AAF09948 (EMBL:AE001897) Deinococcus radiodurans conserved hypothetical protein DR0366, 376 aa; fasta scores: opt: 896 z-score: 1100.7 E(): 0; 39.8% identity in 357 aa overlap conserved hypothetical protein	Fe-S oxidoreductase	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 radical SAM domain protein	conserved hypothetical protein	Radical SAM domain protein	Similar to many proteins of undefined function including: Chlamydia muridarum hypothetical protein Tc0710 SWALL:Q9PJW6 (EMBL:AE002339) (369 aa) fasta scores: E(): 1.1e-107, 71.11% id in 367 aa, Aquifex aeolicus hypothetical protein Aq_648 SWALL:O66888 (EMBL:AE000700) (371 aa) fasta scores: E(): 8.1e-40, 37.17% id in 347 aa and to Bacillus halodurans hypothetical protein Bh3411 SWALL:Q9K7F1 (EMBL:AP001518) (364 aa) fasta scores: E(): 2.5e-35, 33.42% id in 356 aa conserved hypothetical protein	Putative uncharacterized protein	Putative	Thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 radical SAM domain protein	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein KEGG: dra:DR0366 hypothetical protein, ev=0.0, 88% identity TIGRFAM: conserved hypothetical protein: (5.5e-128) PFAM: Radical SAM: (4.2e-17) SMART: Elongator protein 3/MiaB/NifB: (5.1e-07)	conserved hypothetical protein	hypothetical protein	Radical SAM domain protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: chy:CHY_1806 radical SAM domain protein	conserved hypothetical protein identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423	conserved hypothetical protein	conserved hypothetical protein Specificity unclear	conserved hypothetical protein TIGRFAM: conserved hypothetical protein PFAM: Radical SAM domain protein KEGG: fra:Francci3_0519 conserved hypothetical protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: gme:Gmet_3391 hypothetical protein	biotin synthase thiamine biosynthesis enzyme	conserved hypothetical protein	Radical SAM domain protein	radical SAM domain protein identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423	
HELPY00639	Protective surface antigen D15	OUTER MEMBRANE PROTEIN	Surface antigen	Outer membrane protein assembly factor yaeT	outer membrane protein	Outer membrane protein assembly factor	Putative outer membrane protein	Outer membrane surface antigen protein	OUTER MEMBRANE PROTEIN OMP1	Outer membrane protein	Residues 1 to 810 of 810 are 100 pct identical to residues 1 to 810 of a 810 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285871.1 orf, conserved hypothetical protein	Omp85 Analog	Outer membrane protein assembly factor yaeT	YaeT protein	Putative outer membrane signal peptide protein	Outer membrane protein assembly factor yaeT	Probable outer membrane protein	Outer membrane antigen	Outer membrane lipoprotein	Outer membrane protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark outer membrane antigen	putative outer membrane antigen	Outer membrane protein/protective antigen OMA87	similar to Salmonella typhi CT18 outer membrane protein precursor outer membrane protein precursor	Similar to Haemophilus influenzae protective surface antigen d15 precursor SWALL:D153_HAEIN (SWALL:O32629) (793 aa) fasta scores: E(): 5.6e-13, 23.23% id in 835 aa and to Xylella fastidiosa outer membrane antigen xf1046 SWALL:Q9PEI2 (EMBL:AE003941) (784 aa) fasta scores: E(): 5.8e-26, 23.37% id in 830 aa putative exported protein	Conserved hypothetical outer membrane protein	similar to BR1154, bacterial surface antigen bacterial surface antigen	Outer membrane antigen	Outer membrane protein	
HELPY00640	Putative uncharacterized protein	BH3143 protein	SCD16A.33c, conserved hypothetical protein, len: 399 aa; similar to many e.g. TR:O25370 (EMBL:AE000579) conserved hypothetical protein from Helicobacter pylori (383 aa) fasta scores; opt: 1039, z-score: 1256.5, E(): 0, (44.5% identity in 357 aa overlap). conserved hypothetical protein	Putative uncharacterized protein	Fe-S cluster oxidoreduase	hypothetical protein	identified by similarity to GB:AAP77588.1; match to protein family HMM PF04055; match to protein family HMM TIGR00423 radical SAM domain protein	thiamine biosynthesis protein	Putative uncharacterized protein TTHA1092	Similar to Helicobacter pylori hypothetical protein HP0656 SWALL:O25370 (EMBL:AE000579) (383 aa) fasta scores: E(): 1.2e-57, 44.57% id in 341 aa, and to Campylobacter jejuni hypothetical protein CJ0462 SWALL:Q9PI46 (EMBL:AL139075) (348 aa) fasta scores: E(): 1.6e-54, 43.6% id in 344 aa conserved hypothetical protein	Putative uncharacterized protein	Putative	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 conserved hypothetical protein TIGR00423	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 radical SAM domain protein	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein TIGRFAM: conserved hypothetical protein: (2.3e-106) PFAM: Radical SAM: (6.5e-18) KEGG: dra:DR0064 hypothetical protein, ev=0.0, 82% identity	thiamine biosynthesis enzyme ThiH	conserved hypothetical protein	hypothetical protein	Hypothetical protein	conserved hypothetical protein	Thiamine biosynthesis enzyme cytoplasmic protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: aba:Acid345_2881 hypothetical protein	Thiamine biosynthesis enzyme cytoplasmic protein	conserved hypothetical protein identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423	
HELPY00641	Processing protease	Putative peptidase	protease	Non-proteolytic protein, peptidase family M16	Possible protease	SC9B10.05, possible protease, len: 462; weakly similar to several hypothetical proteases eg. TR:P73669 (EMBL:D90908) processing protease from Synechocystis sp.  (435 aa), fasta scores; opt: 363 z-score: 293.0 E(): 3.7e-09, 26.0% identity in 439 aa overlap putative protease	Insulinase family	Probable peptidase signal peptide protein	Similar to zinc protease hypothetical protein	conserved gene zinc protease (peptidase, M16 family)	Similar to zinc protease hypothetical protein	identified by match to protein family HMM PF00675; match to protein family HMM PF05193 peptidase, M16 family	identified by match to protein family HMM PF05193 peptidase, putative	Protease	Zn-dependent peptidase	Putative uncharacterized protein	Putative PROCESSING PROTEASE	Similar to sp|P55680|Y4WB_RHISN; Ortholog to ERGA_CDS_08480 Hypothetical zinc protease	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative Zinc protease-like signal peptide protein	conserved family - putative protease hypothetical protein	Putative uncharacterized protein	Similar to Q83AI5 Peptidase, M16 family from Coxiella burnetii (443 aa). FASTA: opt: 605 Z-score: 727.1 E(): 1.3e-32 Smith-Waterman score: 605; 28.607 identity in 402 aa overlap. ORF ftt1322 Peptidase M16 family protein	putative zinc protease	Similar to sp|P55680|Y4WB_RHISN; Ortholog to ERWE_CDS_08570 Hypothetical zinc protease	identified by match to protein family HMM PF00675; match to protein family HMM PF05193 peptidase, M16 family	identified by match to protein family HMM PF05193 Peptidase M16 inactive domain family	Peptidase M16, C-terminal	Peptidase M16, C-terminal:Peptidase M16, N-terminal	Insulinase-like:Peptidase M16, C-terminal	
HELPY00642	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B)	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	CDS_ID OB0766 glutamyl-tRNA amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	similar to AE007128-14|AAK47418.1| percent identity: 65 in 496 aa putative glutamyl-tRNA amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Glu-tRNA(Gln) amidotransferase subunit	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 2	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	SC8D9.13, probable Glu-tRNA-Gln amidotransferase subunit B, gatB, len: 504aa; similar to many eg. TR:O30509 (EMBL:AF008553) Glu-tRNA-Gln amidotransferase subunit B, gatB, from Bacillus subtilis (476 aa) fasta scores; opt: 886, z-score: 983.5, E(): 0, (42.9% identity in 485 aa overlap). probable Glu-tRNAGln amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Glutamyl-tRNA amidotransferase subunit b	
HELPY00643	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Parvulin-like peptidyl-prolyl isomerase	Putative uncharacterized protein	hypothetical protein	putative periplasmic protein	conserved hypothetical protein Function unclear	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Ferric receptor CfrA	Putative periplasmic protein	Putative periplasmic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative periplasmic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00644	Putative uncharacterized protein	Putative uncharacterized protein	Putative	TPR repeat	hypothetical protein	tetratricopeptide repeat domain protein identified by match to protein family HMM PF07719	conserved hypothetical protein hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF07719	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Tetratricopeptide repeat domain protein	Tetratricopeptide repeat domain protein	Tetratricopeptide repeat domain protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative TPR repeat protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00645	Ribonuclease HI	Ribonuclease HI	Ribonuclease HI	Ribonuclease HI	ribonuclease H	Ribonuclease H	Ribonuclease H	Ribonuclease H	Ribonuclease H	Ribonuclease H	Ribonuclease HI	Ribonuclease HI	Ribonuclease HI	Residues 38 to 192 of 192 are 100 pct identical to residues 1 to 155 of a 155 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285902.1 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication	Ribonuclease HI	Ribonuclease H	Ribonuclease H	Ribonuclease H	Ribonuclease H	Similar to ribonuclease HI hypothetical protein	conserved gene ribonuclease HI	Similar to ribonuclease HI hypothetical protein	identified by similarity to SP:P00647; match to protein family HMM PF00075 ribonuclease HI	Ribonuclease H	Ribonuclease HI	Ribonuclease H	identified by similarity to SP:P00647; match to protein family HMM PF00075 RNase H	Ribonuclease H protein	Ribonuclease H	
HELPY00646	Ribonuclease 3	dsRNA-specific ribonuclease	Ribonuclease 3	Ribonuclease 3	Ribonuclease III	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	CDS_ID OB1526 ribonuclease III	RIBONUCLEASE III	similar to AL034447-16|CAA22415.1| percent identity: 48 in 224 aa putative ribonuclease III	Ribonuclease 3	ribonuclease III	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease III	SC7A1.16, rnc, ribonuclease III, len: 272aa; similar to many eg. SW:RNC_ECOLI rnc, ribonuclease III from Escherichia coli (226 aa) fasta scores; opt: 492, z-score: 612.9, E(): 7.7e-27, (40.9% identity in 220 aa overlap). Contains PS00517 Ribonuclease III family signature, Pfam match to entry PF00636 Ribonuclease_3, RNase3 domain., score 147.60, E-value 2.2e-40 and Pfam match to entry PF00035 dsrm, Double-stranded RNA binding motif, score 47.10, E-value 4e-10. ribonuclease III	Ribonuclease 3	Ribonuclease 3	
HELPY00647	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Residues 2 to 362 of 362 are 99 pct identical to residues 1 to 361 of a 361 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288903.1 chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	chorismate synthase	conserved gene chorismate synthase AroC	chorismate synthase	chorismate synthase	identified by similarity to SP:P12008; match to protein family HMM PF01264; match to protein family HMM TIGR00033 chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	
HELPY00648	Uncharacterized protein HP_0664	Putative uncharacterized protein	Hypothetical protein JHP0609	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein High confidence in function and specificity	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00649	Oxygen-independent coproporphyrinogen-III oxidase	Oxygen-independent coproporphyrinogen III oxidase	O2-independent coproporphyrinogen III oxidase	Putative coproporphyrinogen oxidase III	Oxygen-independent coproporphyrinogen III oxidase	O2-independent coproporphyrinogen III oxidase	Residues 1 to 459 of 459 are 98 pct identical to residues 1 to 459 of a 459 aa protein from Escherichia coli O157:H7 ref: NP_312816.1 O2-independent coproporphyrinogen III oxidase	Coproporphyrinogen III Oxidase	Oxygen-independent coproporphyrinogen III oxidase	Probable oxygen-independent coproporphyrinogen III oxidase oxidoreductase protein	Oxygen-independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538 oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM TIGR00538 oxygen-independent coproporphyrinogen III oxidase	coproporphyrinogen III oxidase	O2-independent coproporphyrinogen III oxidase	similar to Salmonella typhi CT18 oxygen-independent coproporphyrinogen III oxidase oxygen-independent coproporphyrinogen III oxidase	Similar to Aquifex aeolicus oxygen-independent coproporphyrinogen II HemN or AQ_2124 SWALL:HEMN_AQUAE (SWALL:O67886) (456 aa) fasta scores: E(): 1.9e-71, 42.41% id in 448 aa, and to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN or B3867 SWALL:HEMN_ECOLI (SWALL:P32131) (457 aa) fasta scores: E(): 1.6e-59, 37.58% id in 455 aa putative coproporphyrinogen biosynthesis-related protein	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	COG0635 oxygen-independent coproporphyrinogen III oxidase	coproporphyrinogen oxidase, anaerobic	Similar to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN or B3867 SWALL:HEMN_ECOLI (SWALL:P32131) (457 aa) fasta scores: E(): 5.5e-56, 40% id in 445 aa, and to Aquifex aeolicus oxygen-independent coproporphyrinogen II HemN or AQ_2124 SWALL:HEMN_AQUAE (SWALL:O67886) (456 aa) fasta scores: E(): 1.9e-60, 38.86% id in 440 aa, and to Campylobacter jejuni oxygen-independent coproporphyrinogen III oxidase HemN or CJ0992C SWALL:Q9PNU8 (EMBL:AL139076) (451 aa) fasta scores: E(): 5.7e-58, 36.9% id in 439 aa putative oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase and related FeS oxidoreductases HemN protein	Oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase	
HELPY00650	Anaerobic glycerol-3-phosphate dehydrogenase, subunit C	Glycolate oxidase iron-sulfur subunit	identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754 glycolate oxidase, iron-sulfur subunit	identified by match to protein family HMM PF00037; match to protein family HMM PF02754 iron-sulfur cluster-binding domain protein	glycolate oxidase iron-sulfur subunit	Glycolate oxidase iron-sulfur subunit GlcF	Putative uncharacterized protein	Glycerol-3-phosphate dehydrogenase	Glycolate dehydrogenase, iron-sulfur subunit GlcF	(S)-2-hydroxy-acid oxidase	iron-sulfur binding reductase	conserved hypothetical protein	conserved hypothetical protein	TfrB thiol:fumarate reductase, subunit B; COG0247, pfam02754	Putative uncharacterized protein	glycerol-3-phosphate dehydrogenase	Glycolate oxidase iron-sulfur subunit, putative	succinate dehydrogenase and fumarate reductase iron-sulfur protein	putative ferredoxin	protein of unknown function DUF224, cysteine-rich region domain protein PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein KEGG: dra:DR1730 glycolate oxidase, iron-sulfur subunit	Hypothetical protein	putative ferredoxin	iron-sulfur cluster-binding domain protein identified by match to protein family HMM PF00037; match to protein family HMM PF02754	iron-sulfur cluster-binding protein	predicted fumarate reductase/succinate dehydrogenase Fe-S cluster-binding component (HdrD-like)	protein of unknown function DUF224, cysteine-rich region domain protein PFAM: protein of unknown function DUF224, cysteine-rich region domain protein KEGG: mac:MA4630 iron-sulfur binding reductase	Predicted glycerol-3-phosphatedehydrogenase High confidence in function and specificity	iron-sulfur cluster-binding domain protein identified by match to protein family HMM PF00037; match to protein family HMM PF02754	Uncharacterized protein predicted to be involved in DNA repair-like protein	

HELPY00652	Putative uncharacterized protein	Putative uncharacterized protein	Type II R-M system protein	
HELPY00653	Putative uncharacterized protein	hypothetical protein	DNA or RNA helicase of superfamily II KEGG: cgb:cg3398 DNA or RNA helicase of superfamily II	helicase/methyltransferase InterPro; DEAD/DEAH box helicase hypothetical protein	Adenine specific DNA methyltransferase	Putative uncharacterized protein	Putative uncharacterized protein	Type II R-M system protein	pseudo	

HELPY00655	Outer membrane protein	outer membrane protein HorF	outer membrane protein 9 hypothetical protein	Outer membrane protein HorF	Outer membrane protein	Outer membrane protein HorF	
HELPY00656	Solute-binding signature and mitochondrial signature protein	aspartate transaminase (transaminase A)	Putative aspartate aminotransferase	ASPARTATE AMINOTRANSFERASE A	Aspartate aminotransferase	CDS_ID OB1760 aspartate transaminase	aspartate aminotransferase A	Aspartate aminotransferase	Aspartate aminotransferase A	Aspartate Aminotransferase	Aspartate aminotransferase	SCD82.16c, aspC, aspartate aminotransferase, len: 408 aa; highly similar to SW:AAT_STRVG (EMBL:D50624) Streptomyces virginiae aspartate aminotransferase AspC, 397 aa; fasta scores: opt: 2346 z-score: 2655.6 E(): 0; 89.4% identity in 396 aa overlap. Contains Pfam match to entry PF00155 aminotran_1, Aminotransferases class-I and match to Prosite entry PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site aspartate aminotransferase	Aspartate aminotransferase	AspB protein	Aspartate aminotransferase	Aminotransferases class-I	Aspartate aminotransferase	aspartate aminotransferase	identified by similarity to SP:Q02635; match to protein family HMM PF00155 aspartate aminotransferase	aspartate aminotransferase	Aspartate aminotransferase family enzyme	identified by similarity to SP:P53001; match to protein family HMM PF00155 aspartate aminotransferase	Aspartate aminotransferase protein	InterProMatches:IPR004838; Molecular Function: transaminase activity (GO:0008483), Biological Process: biosynthesis (GO:0009058) aspartate aminotransferase	Aspartate aminotransferase	Aspartate aminotransferase family enzyme	Putative uncharacterized protein	similar to BR1495, aspartate aminotransferase AspC, aspartate aminotransferase	Putative uncharacterized protein gbs0571	


HELPY00659	Integrase/recombinase	Tyrosine recombinase xerS	Tyrosine recombinase xerS	Putative XerC Protein	Putative uncharacterized protein	Tyrosine recombinase xerD	Tyrosine recombinase xerD	Tyrosine recombinase xerD	Integrase/recombinase xerD	integrase/recombinase, tyrosine family	identified by similarity to SP:P21891; match to protein family HMM PF00589 site-specific recombinase, phage integrase family	Tyrosine recombinase xerC	Integrase/recombinase XerD	Tyrosine recombinase xerS	INTEGRASE-RECOMBINASE PROTEIN	identified by match to PFAM protein family HMM PF00589 site-specific recombinase, phage integrase family	Tyrosine recombinase xerS	best blastp match gb|AAK34058.1| (AE006560) putative integrase/recombinase [Streptococcus pyogenes M1 GAS] putative integrase/recombinase	Putative Integrase/recombinase	Similar to: HI0309, XERD_HAEIN Site-specific recombinase XerD	integrase/recombinase, tyrosine family	Site-specific recombinase XerD	Tyrosine recombinase XerD	identified by match to protein family HMM PF00589; match to protein family HMM PF02899 site-specific recombinase, phage integrase family	recombinase	Phage integrase, N-terminal SAM-like	Tyrosine recombinase XerC	phage integrase	Integrase/recombinase xerD	
HELPY00660	Methylated-DNA--protein-cysteine methyltransferase	methylated-DNA--protein-cysteine S-methyltransferase	methylated-DNA-protein-cysteine S-methyltransferase	Methylated-DNA-protein-cysteine methyltransferase	Putative methylated-DNA--protein-cysteine S- methyltransferase	Methylated-DNA-protein-cysteine S- methyltransferase	CDS_ID OB0736 methylated-DNA-protein-cysteine S-methyltransferase	similar to U32723-11|AAC22061.1| percent identity: 37 in 161 aa putative methylated-DNA--protein-cysteine S-methyltransferase	O6-methylguanine-DNA methyltransferase	Methylated DNA-protein cysteine methyltransferase	Methylated-DNA-protein-cysteine S- methyltransferase	O6-methylguanine-DNA alkyltransferase	Methylated DNA-protein cysteine methyltransferase	Putative methylated-DNA--protein-cysteine methyltransferase	Methylated-DNA--protein-cysteine methyltransferase	Probable methylated-dna--protein-cysteine methyltransferase	Methylated-DNA-protein-cysteine S- methyltransferase	similar to methylated-DNA-protein-cysteine S-methyltransferase hypothetical protein	conserved gene methylated DNA protein cysteine S-methyltransferase	similar to methylated-DNA-protein-cysteine S-methyltransferase hypothetical protein	Methylated-DNA--[protein]-cysteine S- methyltransferase	identified by similarity to SP:P11742; match to protein family HMM PF01035; match to protein family HMM TIGR00589 methylated-DNA--protein-cysteine methyltransferase	6-O-methylguanine-DNA methyltransferase	identified by similarity to SP:P11742; match to protein family HMM PF01035; match to protein family HMM TIGR00589 methylated-DNA--protein-cysteine S-methyltransferase	Methylated-DNA--protein-cysteine methyltransferase	Methylated-DNA--protein-cysteine methyltransferase	Mb1349c, ogt, len: 165 aa. Equivalent to Rv1316c, len: 165 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 165 aa overlap). Probable ogt, methylated-dna--protein-cysteine methytransferase (EC 2.1.1.63), similar to many e.g. OGT_HAEIN|P44687 Haemophilus influenzae (190 aa), FASTA scores: opt: 405, E(): 6.5e-20, (41.9% identity in 155 aa overlap). Contains PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. PROBABLE METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE OGT (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase)	Putative methylated-DNA--protein-cysteine methyltransferase	6-O-methylguanine-DNA methyltransferase	
HELPY00661	Conserved hypothetical integral membrane protein	CDS_ID OB2374 hypothetical protein	Possible permease	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to OMNI:SA0925; match to protein family HMM PF01925 conserved hypothetical protein	identified by match to protein family HMM PF01925 membrane protein	Hypothetical protein SE0615	transporter	Putative uncharacterized protein	conserved hypothetical protein	Putative	Ortholog of S. aureus MRSA252 (BX571856) SAR0885 putative membrane protein	conserved hypothetical protein	similar to unknown protein	Similar to Bacillus subtilis hypothetical protein YunE TR:O32134 (EMBL:Z99120) (273 aa) fasta scores: E(): 7.3e-42, 41.544% id in 272 aa, and to Bacillus halodurans hypothetical protein BH3454 TR:Q9K7B2 (EMBL:AP001518) (273 aa) fasta scores: E(): 1.9e-41, 43.939% id in 264 aa putative membrane protein	Protein of unknown function DUF81	conserved hypothetical protein	identified by similarity to GP:10176077; match to protein family HMM PF01925 conserved hypothetical protein	similar to gi|57285800|gb|AAW37894.1| [Staphylococcus aureus subsp. aureus COL], percent identity 83 in 274 aa, BLASTP E(): e-128 putative permease	identified by match to protein family HMM PF01925 putative membrane protein	Protein of unknown function DUF81	conserved hypothetical protein	Putative uncharacterized protein	protein of unknown function DUF81	putative membrane protein identified by match to protein family HMM PF01925	putative membrane protein identified by match to protein family HMM PF01925	probable membrane protein	
HELPY00663	Lipopolysaccharide biosynthesis protein	Lipopolysaccharide biosynthesis protein wbpB	Putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN	Predicted dehydrogenases and related proteins MviM protein	oxidoreductase-like	Oxidoreductase-like	putative lipopolysaccharide biosynthesis protein	regulatory protein, LacI	oxidoreductase domain protein PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain KEGG: pae:PA3158 probable oxidoreductase WpbB	Oxidoreductase domain protein	lipopolysaccharide biosynthesis protein wbpB putative oxido-reductase High confidence in function and specificity	MviM protein	lipopolysaccharide biosynthesis protein	oxidoreductase domain protein PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain KEGG: pae:PA3158 probable oxidoreductase WpbB	MviM protein KEGG: msu:MS1500 MviM protein	Oxidoreductase	Oxidoreductase domain protein	Oxidoreductase domain protein	KEGG: msu:MS1500 MviM protein MviM protein	Putative uncharacterized protein	Oxidoreductase domain protein	Oxidoreductase domain protein	Oxidoreductase, Gfo/Idh/MocA family	Oxidoreductase domain protein	Oxidoreductase domain protein	Oxidoreductase domain protein	Putative lipopolysaccharide biosynthesis protein	Putative oxidoreductase	Putative lipopolysaccharide biosynthesis protein	
HELPY00664	Ribonucleoside-diphosphate reductase subunit alpha	Ribonucleoside-diphosphate reductase	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	CDS_ID OB3089 ribonucleoside-diphosphate reductase alpha subunit	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase subunit alpha	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleotide reductase alpha-chain	Residues 1 to 714 of 714 are 98 pct identical to residues 1 to 714 of a 714 aa protein from Escherichia coli K12 ref: NP_417161.1 ribonucleoside-diphosphate reductase 2, alpha subunit	Ribonucleoside-diphosphate reductase subunit alpha	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase alpha chain	ribonucleoside-diphosphate reductase alpha chain	Ribonucleoside-diphosphate reductase	identified by similarity to EGAD:37757; match to protein family HMM PF00317; match to protein family HMM PF02867 ribonucleoside-diphosphate reductase 2, alpha subunit	Ribonucleoside-diphosphate reductase	Ribonuceloside diphosphate reductase major subunit	Ribonucleoside-diphosphate reductase alpha subunit	
HELPY00665	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00666	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00667	Bifunctional protein glmU	UDP-N-acetylglucosamine pyrophosphorylase	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	CDS_ID OB0058 UDP-N-acetylglucosamine pyrophosphorylase	similar to AE006987-11|AAK45297.1| percent identity: 61 in 489 aa putative UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine pyrophosphorylase	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	SCE66.01, probable nucleotidyltransferase, partial CDS, len: >343 aa; similar to many eg.. SW:P14192 (GCAD_BACSU) UDP-N-acetylglucosamine pyrophosphorylase from Bacillus subtilis (456 aa) fasta scores; opt: 895, z-score: 1020.4, E(): 0, 42.6% identity in 317 aa overlap.  Contains five Pfam matches to entry PF00132 hexapep, Bacterial transferase hexapeptide.  SCE41.31, probable nucleotidyltransferase (fragment), len: >174 aa; similar to SW:GLMU_ECOLI (EMBL:X01631) Escherichia coli UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) GlmU, 456 aa; fasta scores: opt: 369 z-score: 411.5 E(): 2.1e-15; 42.4% identity in 165 aa overlap putative nucleotidyltransferase	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	Bifunctional protein glmU	UDP-N-acetylglucosamine pyrophosphorylase	Residues 1 to 456 of 456 are 99 pct identical to residues 1 to 456 of a 456 aa protein from Escherichia coli O157:H7 ref: NP_312699.1 N-acetyl glucosamine-1-phosphate uridyltransferase	Bifunctional protein glmU	
HELPY00668	Flagellar biosynthetic protein	Flagellar biosynthetic protein FliP, interruption -C	Flagellar biosynthetic protein fliP	CDS_ID OB1571; required for flagellar formation flagellar protein	flagellar biosynthesis protein fliP	Flagellar protein required for flagellar formation	Flagellar biosynthesis/type III secretory pathway protein	Residues 1 to 204 of 204 are 100 pct identical to residues 42 to 245 of a 245 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288409.1 flagellar biosynthesis	Flagellar biosynthetic protein FliP	identified by similarity to SP:P35528; match to protein family HMM PF00813; match to protein family HMM TIGR01103 flagellar biosynthetic protein FliP	InterProMatches:IPR005837; required for flagellar formation, Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020) flagellar protein	flagellar biosynthetic protein FliP	IPR005837: Flagellar transport protein FliP; IPR005838: Type III secretion system inner membrane P protein flagellar biosynthesis	similar to Salmonella typhi CT18 flagellar biosynthetic protein FliP flagellar biosynthetic protein FliP	FLAGELLAR BIOSYNTHESIS PROTEIN	Flagellar biosynthetic protein fliP	identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103 flagellar biosynthetic protein FliP	Code: NU; COG: COG1338 flagellar biosynthesis	Flagellar biosynthetic protein FliP	Pfam: FliP family; TIGRFam: fliP, flagellar biosynthetic protein Citation: Temporal and spatial regulation of fliP, an early flagellar gene of Caulobacter crescentus that is required for motility and no Type III secretion system inner membrane P protein	flagellar transport protein FliP	flagellar biosynthetic protein FliP	Flagellar transport protein FliP	flagellar biosynthetic protein FliP TIGRFAMsMatches:TIGR01103	putative flagellar biosynthetic protein FliP similarity:fasta; with=UniProt:FLIP_AGRT5 (EMBL:AE007990); Agrobacterium tumefaciens (strain C58/ATCC 33970).; fliP; Flagellar biosynthetic protein fliP.; length=245; id 82.449; 245 aa overlap; query 1-245; subject 1-245	flagellar biosynthetic protein FliP	flagellar biosynthesis transmembrane protein similar to fliP (SMc03036) [Sinorhizobium meliloti] and AGR_C_963p [Agrobacterium tumefaciens] Similar to entrez-protein:P37827 Putative location:bacterial inner membrane Psort-Score: 0.5352; go_component: membrane [goid 0016020]; go_component: integral to membrane [goid 0016021]; go_process: protein secretion [goid 0009306]	Flagellar biosynthetic protein FliP	Flagellar biosynthetic protein FliP precursor	
HELPY00668	Flagellar biosynthetic protein	Flagellar biosynthetic protein FliP, interruption -C	Flagellar biosynthetic protein fliP	CDS_ID OB1571; required for flagellar formation flagellar protein	flagellar biosynthesis protein fliP	Flagellar protein required for flagellar formation	Flagellar biosynthesis/type III secretory pathway protein	Residues 1 to 204 of 204 are 100 pct identical to residues 42 to 245 of a 245 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288409.1 flagellar biosynthesis	Flagellar biosynthetic protein FliP	identified by similarity to SP:P35528; match to protein family HMM PF00813; match to protein family HMM TIGR01103 flagellar biosynthetic protein FliP	InterProMatches:IPR005837; required for flagellar formation, Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020) flagellar protein	flagellar biosynthetic protein FliP	IPR005837: Flagellar transport protein FliP; IPR005838: Type III secretion system inner membrane P protein flagellar biosynthesis	similar to Salmonella typhi CT18 flagellar biosynthetic protein FliP flagellar biosynthetic protein FliP	FLAGELLAR BIOSYNTHESIS PROTEIN	Flagellar biosynthetic protein fliP	identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103 flagellar biosynthetic protein FliP	Code: NU; COG: COG1338 flagellar biosynthesis	Flagellar biosynthetic protein FliP	Pfam: FliP family; TIGRFam: fliP, flagellar biosynthetic protein Citation: Temporal and spatial regulation of fliP, an early flagellar gene of Caulobacter crescentus that is required for motility and no Type III secretion system inner membrane P protein	flagellar transport protein FliP	flagellar biosynthetic protein FliP	Flagellar transport protein FliP	flagellar biosynthetic protein FliP TIGRFAMsMatches:TIGR01103	putative flagellar biosynthetic protein FliP similarity:fasta; with=UniProt:FLIP_AGRT5 (EMBL:AE007990); Agrobacterium tumefaciens (strain C58/ATCC 33970).; fliP; Flagellar biosynthetic protein fliP.; length=245; id 82.449; 245 aa overlap; query 1-245; subject 1-245	flagellar biosynthetic protein FliP	flagellar biosynthesis transmembrane protein similar to fliP (SMc03036) [Sinorhizobium meliloti] and AGR_C_963p [Agrobacterium tumefaciens] Similar to entrez-protein:P37827 Putative location:bacterial inner membrane Psort-Score: 0.5352; go_component: membrane [goid 0016020]; go_component: integral to membrane [goid 0016021]; go_process: protein secretion [goid 0009306]	Flagellar biosynthetic protein FliP	Flagellar biosynthetic protein FliP precursor	
HELPY00669	Iron(III) dicitrate transport protein	Probable ferrisiderophore receptor protein	IPR000531: TonB-dependent receptor protein outer membrane protein receptor / transporter for ferrichrome, colicin M, and phages T1, T5, and phi80	IRON(III) DICITRATE TRANSPORT PROTEIN	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type prc : putative receptor putative ferrichrome-iron receptor protein	Similar to Vibrio parahaemolyticus ferric vibrioferrin receptor PvuA SWALL:Q9AQK7 (EMBL:AB048250) (712 aa) fasta scores: E(): 6.5e-13, 23.02% id in 721 aa, and to Rhizobium meliloti putative outer membrane receptor protein r02383 or SMC02721 SWALL:Q92N47 (EMBL:AL591790) (932 aa) fasta scores: E(): 9.8e-74, 38.68% id in 623 aa, and to Caulobacter crescentus TonB-dependent receptor CC0139 SWALL:Q9ABT1 (EMBL:AE005688) (730 aa) fasta scores: E(): 6.1e-18, 25.64% id in 733 aa putative TonB-dependent outer membrane receptor protein	Outer membrane receptor for Fe3+-dicitrate	Outer membrane protein receptor , transporter for ferrichrome, colicin M, and phages T1, T5, and phi80	TonB-dependent outer membrane receptor	transporter for ferrichrome, colicin M, and phages T1, T5, and phi80; Code: P; COG: COG1629 outer membrane protein receptor	FecA-like outer membrane receptor	iron(III) dicitrate transport protein	putative outer membrane receptor protein COG4772 Outer membrane receptor for Fe3+-dicitrate	iron(III) dicitrate transport protein, outer membrane receptor	iron(III) dicitrate transport protein Iron(III) dicitrate transport protein fecA High confidence in function and specificity	Putative TonB-dependent receptor protein	TonB-dependent siderophore receptor precursor	TonB-dependent heme receptor	TonB-dependent siderophore receptor precursor	PFAM: TonB-dependent receptor; TonB-dependent receptor plug KEGG: shm:Shewmr7_3399 TonB-dependent receptor TonB-dependent receptor	TonB-dependent receptor	TonB-dependent receptor	Ferrichrome-iron receptor	Putative uncharacterized protein	TonB-dependent receptor precursor	Outer membrane receptor for Fe3+-dicitrate/TonB- dependent receptor	Iron(III) dicitrate TonB-dependent receptor; putative signal peptide	TonB-dependent receptor, plug PFAM: TonB-dependent receptor; TonB-dependent receptor, plug KEGG: plt:Plut_0256 ferric siderophore receptor, putative, TonB receptor family	Iron(III) dicitrate transport protein	
HELPY00670	Ferrous iron transport protein B	Putative ferrous ion transport protein B	Ferrous iron transport protein B	Ferrous iron transport protein B	Ferrous ion uptake system protein FeoB	iron(II) transport protein B	Probable ferrous iron transport b transmembrane protein	Ferrous iron transport protein B	ferrous ion transport protein B	FERROUS IRON TRANSPORT PROTEIN B	Ferrous iron transport protein B	COG0370 Fe2+ transport system protein B	ferrous iron uptake transporter protein B	Ferrous iron transport protein B (FeoB)	Fe2+ transport system protein B	identified by similarity to SP:P33650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 ferrous iron transport protein B	Ferrous iron transport protein B:Small GTP-binding protein domain	Ferrous iron transport protein B	ferrous iron transport protein B	Ferrous iron transport protein B	ferrous iron transport protein B TIGRFAM: ferrous iron transport protein B: (8.9e-190) Small GTP-binding protein domain: (4.3e-09) GTP-binding: (3.4e-09) PFAM: GTP-binding protein, HSR1-related: (5.6e-36) Ferrous iron transport protein B-like: (1.1e-43) Ferrous iron transport B-like: (1.7e-17) nucleoside recognition: (4.5e-14) KEGG: dra:DR1219 ferrous iron transport protein B, ev=0.0, 80% identity	ferrous iron transport protein B	ferrous iron transport protein B	iron(II) transport protein	Fe2+ transport system protein B	ferrous iron transport protein B	ferrous iron transport protein B	ferrous iron transport protein B	Fe2+ transport system protein B	
HELPY00671	Putative uncharacterized protein	Polysaccharide biosynthesis protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	3'-5' exonuclease, PolB-like protein	
HELPY00672	Putative uncharacterized protein	
HELPY00673	Acetyl coenzyme A acetyltransferase	Acetyl-CoA acetyltransferase	CDS_ID OB2632; acetoacetyl-CoA thiolase acetyl-CoA acetyltransferase	beta-ketothiolase, (ACETOACETYL-COA THIOLASE)	Beta-ketothiolase, acetoacetyl-CoA thiolase	Acetyl-CoA acetyltransferase	Acetyl-CoA acetyltransferase	Acetyl-CoA acetyltransferase (Beta-ketothiolase) protein	similar to Salmonella typhi CT18 probable acetyl-CoA acetyltransferase probable acetyl-CoA acetyltransferase	ACETYL-COA ACETYLTRANSFERASE	Acetyl-CoA acetyltransferase	acetoacetyl-CoA thiolase; Similar to: HI0771, ATOB_HAEIN acetyl-CoA acetyltransferase	Putative acetyl-CoA acetyltransferase	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 acetyl-CoA acetyltransferase	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 acetyl-CoA acetyltransferase	Thiolase	acetyl-CoA acetyltransferase	Code: I; COG: COG0183 acetyl-CoA acetyltransferase	Acetyl-CoA C-acetyltransferase	transcript_id=ENSOCUT00000013836	Acetyl-CoA acetyltransferase	Thiolase	Acetyl-CoA acetyltransferase	Acetyl-CoA C-acetyltransferase	transcript_id=ENSDNOT00000002503	putative acetyl-CoA acetyltransferase similarity:fasta; with=UniProt:THIL_PARDE (EMBL:PDPHAA); Paracoccus denitrificans.; phaA; Acetyl-CoA acetyltransferase (EC 2.3.1.9) (Acetoacetyl-CoA thiolase).; length=391; id 74.805; 385 aa overlap; query 7-391; subject 5-389 similarity:fasta; with=UniProt:Q9AG69_RHIET (EMBL:AF342934); Rhizobium etli.; phaA; Beta-ketothiolase.; length=397; id 89.673; 397 aa overlap; query 1-393; subject 1-397	Acetyl-CoA acetyltransferase	acetyl-CoA acetyltransferase identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930	acetyl-CoA acetyltransferase	
HELPY00674	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	3-oxoadipate CoA-transferase subunit A	SC4C6.13c, pcaI, probable 3-oxoadipate CoA-transferase subunit A, len: 260 aa; highly similar to many CoA transferases e.g. SW:PCAI_PSEPU (EMBL:M88763), pcaI, Pseudomonas putida 3-oxoadipate CoA-transferase subunit A (231 aa), fasta scores; opt: 337 z-score: 379.8 E(): 8e-14, 42.6% identity in 242 aa overlap. Highly similar to SW:SCOA_MYCTU (EMBL:Z95556), scoA, Mycobacterium tuberculosis probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (248 aa) (69.9% identity in 249 aa overlap). Contains Pfam match to entry PF01144 CoA_trans, Coenzyme A transferase and PS01273 CoA transferases signature 1 putative 3-oxoadipate CoA-transferase subunit A	Probable fesuccinyl-coa:3-ketoacid-coenzyme a transferase subunit a protein	identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144 3-oxoadipate CoA-succinyl transferase, alpha subunit	Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	Mb2532c, scoA, len: 248 aa. Equivalent to Rv2504c, len: 248 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 248 aa overlap). Probable scoA, succinyl-CoA:3-ketoacid-Coenzyme A transferase, alpha subunit (3-oxo acid:CoA transferase) (EC 2.8.3.6). Highly similar to others e.g. Q9XAM7|SC4C6.13c from Streptomyces coelicolor (260 aa), FASTA scores: opt: 1130, E(): 2.2e-64, (69.9% identity in 249 aa overlap); Q9XD83|PCAI from Streptomyces sp. 2065 (251 aa), FASTA scores: opt: 1121, E(): 8.1e-64, (69.5% identity in 249 aa overlap); etc. BELONGS TO THE 3-OXOACID COA-TRANSFERASE SUBUNIT A FAMILY. PROBABLE SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE (ALPHA SUBUNIT) SCOA (3-OXO ACID:CoA TRANSFERASE) (OXCT A) (SUCCINYL-COA:3-OXOACID-COENZYME A TRANSFERASE)	succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark IpsJ protein	IpsJ protein	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	coenzyme A transferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme acetoacetyl-CoA transferase, alpha subunit	CoA-transferase, subunit A, putative	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	3-oxoadipate CoA-succinyl transferase alpha subunit	identified by similarity to GP:4007784; match to protein family HMM PF01144; match to protein family HMM TIGR02429 3-oxoadipate CoA-succinyl transferase, alpha subunit	identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144; match to protein family HMM TIGR02429 3-oxoadipate CoA-succinyl transferase, alpha subunit	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 3-oxoacid CoA-transferase subunit A family enzyme	3-oxoacid CoA-transferase	Succinyl-CoA:3-ketoacid-coenzyme A transferase	coenzyme A transferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme succinyl-CoA transferase, subunit A	3-ketoacid CoA transferase alpha subunit	3-oxoacid CoA-transferase, subunit A	3-oxoacid CoA-transferase, subunit A	succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	3-oxoacid CoA-transferase, subunit A	3-oxoacid CoA-transferase, subunit A	
HELPY00675	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	3-oxoadipate CoA-succinyl transferase beta subunit	3-oxoadipate CoA-transferase subunit B	Probable succinyl-coa:3-ketoacid-coenzyme a transferase subunit b protein	Acetate CoA-transferase beta subunit	identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144 3-oxoadipate CoA-succinyl transferase, beta subunit	Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	Mb2531c, scoB, len: 218 aa. Equivalent to Rv2503c, len: 218 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 218 aa overlap). Probable scoB, 3-oxo acid:CoA transferase, beta subunit (succinyl-CoA:3-ketoacid-CoA transferase) (EC 2.8.3.5).  Highly similar to others e.g. Q9XAM8|SC4C6.12c from Streptomyces coelicolor (217 aa), FASTA scores: opt: 1048, E(): 2.6e-60, (73.9% identity in 207 aa overlap); Q9XD82|PCAJ from Streptomyces sp. 2065 (214 aa), FASTA scores: opt: 1031, E(): 3.2e-59, (70.8% identity in 209 aa overlap); AAK53493|LPSJ from Xanthomonas campestris (pv.  campestris) (212 aa), FASTA scores: opt: 886, E(): 6.6e-50, (62.5% identity in 208 aa overlap); P42316|SCOB_BACSU from Bacillus subtilis (216 aa), FASTA scores: opt: 820, E(): 1.2e-45, (58.2% identity in 201 aa overlap); etc. BELONGS TO THE 3-OXOACID COA-TRANSFERASE SUBUNIT B FAMILY. PROBABLE SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE (BETA SUBUNIT) SCOB (3-OXO-ACID:COA TRANSFERASE) (OXCT B) (SUCCINYL CoA:3-OXOACID CoA-TRANSFERASE)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark IpsJ protein	IpsJ protein	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	Acetyl-CoA:acetoacetyl-CoA transferase beta subunit	best blastp match gb|AAK33248.1| (AE006483) butyrate-acetoacetate CoA-transferase, beta subunit [Streptococcus pyogenes M1 GAS] butyrate-acetoacetate CoA-transferase, beta subunit	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme acetoacetyl-CoA transferase, beta subunit	CoA-transferase, subunit B, putative	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	IpsJ protein	identified by similarity to GP:4007785; match to protein family HMM PF01144; match to protein family HMM TIGR02428 3-oxoadipate CoA-succinyl transferase, beta subunit	acyl-CoA:3-ketoacid CoA-transferase, subunit B	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 3-oxoacid CoA-transferase subunit B family enzyme	Coenzyme A transferase	3-oxoacid CoA-transferase	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	acetyl-CoA:acetoacetyl-CoA transferase beta subunit	coenzyme A transferase	Code: I; COG: COG2057 acetyl-CoA:acetoacetyl-CoA transferase beta subunit	similar to gi|56965782|ref|YP_177516.1| [Bacillus clausii KSM-K16], percent identity 70 in 212 aa, BLASTP E(): 2e-78 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	3-oxoadipate CoA-transferase, beta subunit	3-oxoacid CoA-transferase, subunit B	
HELPY00676	Conserved hypothetical integral membrane protein	Short-chain fatty acids transporter	short-chain fatty acids transporter	Short-chain fatty acids transporter	Similar to: HI0772, ATOE_HAEIN short-chain fatty acids transporter	short-chain fatty acids transporter	Code: I; COG: COG2031 short chain fatty acid transporter	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type t : transporter putative short-chain fatty acid transport protein (scFAT family)	short chain fatty acid transporter	conserved hypothetical protein	Short-chain fatty acids transporter	short chain fatty acid transporter	conserved hypothetical protein	short-chain fatty acids transporter	Short-chain fatty acids transporter	short chain fatty acid transporter PFAM: short chain fatty acid transporter KEGG: bba:Bd0245 short-chain fatty acids transporter	Short chain fatty acid transporter precursor	short-chain fatty acids transporter	Short chain fatty acid transporter	Short-chain fatty acids transporter	conserved hypothetical protein TIGRFAM: conserved hypothetical protein PFAM: short chain fatty acid transporter KEGG: bur:Bcep18194_B1677 hypothetical protein	Short-chain fatty acids transporter	short-chain fatty acids transporter Short-chain fatty acids transporter High confidence in function and specificity	short-chain fatty acid transporter identified by match to protein family HMM PF02667	short chain fatty acid transporter PFAM: short chain fatty acid transporter KEGG: shm:Shewmr7_2886 short chain fatty acid transporter	short chain fatty acid transporter PFAM: short chain fatty acid transporter KEGG: son:SO1391 short-chain fatty acids transporter	Transporter, short-chain fatty acid transporter family	short chain fatty acid transporter PFAM: short chain fatty acid transporter KEGG: shm:Shewmr7_2886 short chain fatty acid transporter	Short chain fatty acid transporter precursor	
HELPY00677	Putative uncharacterized protein	Putative Outer membrane protein	identified by similarity to OMNI:VC1867 conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	Hypothetical protein	putative outer membrane protein	Hypothetical membrane spanning protein	outer membrane protein	putative outer membrane protein Function unclear	KEGG: cps:CPS_1463 hypothetical protein conserved hypothetical protein	Putative uncharacterized protein precursor	Uncharacterized protein-like protein precursor	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative outer membrane protein	Putative uncharacterized protein	Putative outer membrane protein	Putative uncharacterized protein	Outer membrane protein	Outer membrane protein	
HELPY00678	Hydantoin utilization protein A	Putative HYDANTOIN UTILIZATION	Acetone carboxylase beta subunit	Hydantoinase/oxoprolinase:Hydantoinaseoxoprolina se, N-terminal	Hydantoinase/oxoprolinase:Hydantoinaseoxoprolina se, N-terminal	Hydantoinase/oxoprolinase	hydantoin utilization protein A	Hydantoinase/oxoprolinase	Hydantoinase/oxoprolinase PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein KEGG: rpc:RPC_3605 hydantoinase/oxoprolinase	Hydantoinase/oxoprolinase	N-methylhydantoinase A Hydantoin utilization protein A (ORF2) High confidence in function and specificity	Hydantoinase/oxoprolinase	Acetone carboxylase beta subunit	5-oxoprolinase	5-oxoprolinase	5-oxoprolinase (ATP-hydrolyzing) PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein KEGG: rrs:RoseRS_2091 5-oxoprolinase (ATP-hydrolyzing)	Acetone carboxylase beta subunit	5-oxoprolinase	Hydantoin utilization protein A	5-oxoprolinase (ATP-hydrolyzing) PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: azc:AZC_2923 acetone carboxylase beta subunit	Hydantoinase/oxoprolinase	
HELPY00679	N-methylhydantoinase	Putative HYDANTOIN UTILIZATION	Acetone carboxylase alpha subunit	Hydantoinase B/oxoprolinase	Hydantoinase B/oxoprolinase	Hydantoinase B/oxoprolinase	N-methylhydantoinase	Hydantoinase B/oxoprolinase	Hydantoinase B/oxoprolinase PFAM: Hydantoinase B/oxoprolinase KEGG: rpc:RPC_3604 hydantoinase B/oxoprolinase	Hydantoinase B/oxoprolinase	N-methylhydantoinase B High confidence in function and specificity	5-oxoprolinase	Hydantoinase B/oxoprolinase	Acetone carboxylase alpha subunit	Hydantoinase B/oxoprolinase	Hydantoinase B/oxoprolinase	Hydantoinase B/oxoprolinase PFAM: Hydantoinase B/oxoprolinase KEGG: rrs:RoseRS_2092 hydantoinase B/oxoprolinase	Acetone carboxylase alpha subunit	Hydantoinase B/oxoprolinase	N-methylhydantoinase	N-methyl hydantoinase	Hydantoinase B/oxoprolinase PFAM: Hydantoinase B/oxoprolinase; KEGG: azc:AZC_2922 acetone carboxylase alpha subunit	N-methylhydantoinase B	Hydantoinase B/oxoprolinase	Putative N-methylhydantoinase	
HELPY00680	Putative uncharacterized protein	Putative	Acetone carboxylase gamma subunit	acetone carboxylase gamma subunit	acetone carboxylase gamma subunit	acetone carboxylase gamma subunit	acetone carboxylase, gamma subunit	acetone carboxylase gamma subunit	acetone carboxylase gamma subunit KEGG: rpc:RPC_3603 acetone carboxylase gamma subunit	Acetone carboxylase gamma subunit	conserved hypothetical protein putative acetone carboxylase gamma subunit Function unclear	Acetone carboxylase gamma subunit	Acetone carboxylase gamma subunit	Acetone carboxylase gamma subunit precursor	Acetone carboxylase gamma subunit-like protein	Acetone carboxylase gamma subunit PFAM: Acetone carboxylase gamma subunit KEGG: rrs:RoseRS_2093 acetone carboxylase gamma subunit-like protein	Acetone carboxylase gamma subunit	Acetone carboxylase gamma subunit	Putative uncharacterized protein	Acetone carboxylase, gamma subunit	Acetone carboxylase gamma subunit PFAM: Acetone carboxylase gamma subunit; KEGG: azc:AZC_2921 acetone carboxylase gamma subunit	Acetone carboxylase gamma subunit	Acetone carboxylase gamma subunit	Acetone carboxylase, gamma subunit	Acetone carboxylase gamma subunit	Putative uncharacterized protein	
HELPY00682	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00683	Diacylglycerol kinase	Undecaprenol kinase	CDS_ID OB1952 diacylglycerol kinase	Diacylglycerol kinase	Lin1501 protein	Residues 1 to 122 of 122 are 100 pct identical to residues 1 to 122 of a 122 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290676.1 diacylglycerol kinase	Diacylglycerol kinase	Probable diacylglycerol kinase transmembrane protein	Diacylglycerol kinase	Diacylglycerol kinase	Diacylglycerol kinase	identified by similarity to SP:P00556; match to protein family HMM PF01219 diacylglycerol kinase	diacylglycerol kinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark diacylglycerol kinase	Diacylglycerol kinase	Diacylglycerol kinase	IPR000829: Prokaryotic diacylglycerol kinase diacylglycerol kinase	similar to Salmonella typhi CT18 diacylglycerol kinase diacylglycerol kinase	Diacylglycerol kinase	similar to BR1014, diacylglycerol kinase DgkA, diacylglycerol kinase	Putative uncharacterized protein gbs1561	Diacylglycerol kinase	Diacylglycerol kinase	identified by match to PFAM protein family HMM PF01219 diacylglycerol kinase	Diacylglycerol kinase	Diacylglycerol kinase	identified by similarity to SP:Q05888; match to protein family HMM PF01219 diacylglycerol kinase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme diacylglycerol kinase	Diacylglycerol kinase	
HELPY00684	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase subunit A	Putative DNA gyrase A subunit	DNA gyrase subunit A	DNA gyrase, A subunit	putative N-terminal transit sequence DNA gyrase A-subunit	DNA gyrase subunit A	DNA gyrase subunit A	DNA GYRASE SUBUNIT A	DNA gyrase subunit A	DNA gyrase A subunit	DNA gyrase, subunit A	DNA gyrase subunit A	DNA gyrase, subunit A, type II topoisomerase	CDS_ID OB0007 DNA gyrase subunit A	DNA GYRASE SUBUNIT A	similar to L27063-6|AAA65216.1| percent identity: 63 in 850 aa putative DNA gyrase subunit A	Probable DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase, A subunit	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase subunit A	
HELPY00685	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00686	Response regulator	Two component sigma-54-dependent transcriptional regulator, Fis family	Response regulator	similar to two-component response regulator hypothetical protein	conserved gene sigma 54-dependent response regulator	similar to two-component response regulator hypothetical protein	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 sigma-54 dependent DNA-binding response regulator	Transcriptional activator FlgR	Transcriptional regulator	Putative TRANSCRIPTIONAL REGULATOR	FlrC; two-component response regulator	Similar to: HI0410, TYRR_HAEIN transcriptional regulatory protein TyrR	Sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199 sigma-54 dependent transcriptional regulator, putative	identified by similarity to SP:P17899; match to protein family HMM PF00158; match to protein family HMM TIGR01199 sigma-54 dependent transcriptional regulator	Helix-turn-helix, Fis-type	two component Sigma-54 specific, transcriptional regulator, Fis famliy	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; PubMedId : 11525977, 15090493; Product type r : regulator putative Sigma-54 dependent response regulator; regulation of polar flagellae expression	Sigma-54 Specific Transcriptional Regulator, Fis family	sigma 54-dependent transcriptional activator containing CheY-like receiver domain Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204	transcriptional regulator, Fis family	transcriptional activator of flagella proteins	diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)	Two component, sigma54 specific, transcriptional regulator, Fis family protein	sigma54 specific transcriptional regulator, Fis family PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type SMART: AAA ATPase KEGG: cte:CT1497 sigma-54-dependent transcriptional regulator	two component transcriptional regulator, Fis family	response regulator High confidence in function and specificity	two component, sigma54 specific, transcriptional regulator, Fis family PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type SMART: AAA ATPase KEGG: rpc:RPC_3976 two component, sigma54 specific, transcriptional regulator, fis family	sigma-54 dependent DNA-binding response regulator Nla19 identified by similarity to GB:AAQ63909.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199	
HELPY00688	UvrABC system protein A	excinuclease ABC subunit A	excinuclease ABC subunit A	Putative excision nuclease ABC subunit A	UvrABC system protein A	Excinuclease ABC, A subunit	Excinuclease ABC subunit A	UvrABC system protein A	UvrABC system protein A	Excinuclease ABC subunit A	UvrABC system protein A	UvrABC system protein A	Excinuclease ABC subunit A	UvrABC system protein A	CDS_ID OB2487 excinuclease ABC subunit A	UvrABC system protein A	similar to AL035591-18|CAB38148.1| percent identity: 68 in 949 aa putative excinuclease ABC subunit A	Putative excinuclease ABC chain A	excinuclease ABC subunit A	Excinuclease ABC, A subunit	Excinuclease ABC subunit A	Excinuclease ABC subunit A	Excinuclease ABC subunit A	UvrABC system protein A	UvrA-like protein	UvrABC system protein A	Repair endonuclease subunit A	Excinuclease ABC, A subunit	SCC54.18c, uvrA, ABC excision nuclease subunit A, len: 1014aa; high level of similarity to many egs.  SW:UVRA_BACSU uvrA, ABC excision nuclease subunit A from Bacillus subtilis (957 aa) fasta scores; opt: 3887, z-score: 4136.7, E(): 0, (60.8% identity in 947 aa overlap). Contains three PS00017 ATP/GTP-binding site motif A (P-loop) matches and two PS00211 ABC transporters family signatures. Also contains two Pfam match to entry PF00005 ABC_tran, ABC transporter, score 119.60, E-value 5.8e-32. ABC excision nuclease subunit A	
HELPY00689	Outer membrane protein	outer membrane protein HopE	outer membrane protein 11 hypothetical protein	Outer membrane protein/porin	Outer membrane protein	Outer membrane protein HopE	
HELPY00690	S-adenosyl-L-methionine-dependent methyltransferase mraW	hypothetical protein	hypothetical conserved protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	CDS_ID OB1462 hypothetical protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	similar to Z95388-35|CAB08662.1| percent identity: 54 in 327 aa conserved hypothetical protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	hypothetical protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-methyltransferase MraW	
HELPY00691	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00692	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	CDS_ID OB1067 hypothetical protein	Putative uncharacterized protein	Lin2732 protein	hypothetical protein, conserved, DUF62 family	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	InterProMatches:IPR008995 putative Molybdate/tungstate binding protein	Putative uncharacterized protein TTHA0338	conserved hypothetical protein	Putative	Ortholog of S. aureus MRSA252 (BX571856) SAR2768 conserved hypothetical protein	conserved hypothetical protein	conserved Archaeal protein	identified by similarity to OMNI:NTL01LI2714; match to protein family HMM PF01887 conserved hypothetical protein	Conserved hypothetical protein	truncated conserved hypothetical protein, truncated	identified by similarity to OMNI:NTL01TE2176 conserved hypothetical protein	Similar to Helicobacter pylori conserved hypothetical protein HP0709 TR:O25413 (EMBL:AE000584) (300 aa) fasta scores: E(): 2.1e-53, 50.54% id in 277 aa, and to Methanococcus jannaschii hypothetical protein MJ1651 SW:YG51_METJA (Q59045) (263 aa) fasta scores: E(): 4.3e-17, 30.51% id in 272 aa conserved hypothetical protein	conserved hypothetical protein	conserved nad operon protein	Code: S; COG: COG1912 conserved hypothetical protein	identified by similarity to EGAD:167429; match to protein family HMM PF01887 conserved hypothetical protein	conserved hypothetical protein	Protein of unknown function DUF62	Code: S; COG: COG1912 conserved hypothetical protein	
HELPY00693	Putative uncharacterized protein	Putative outer membrane protein HomB	Outer membrane protein HomB	
HELPY00694	Putative uncharacterized protein	identified by similarity to OMNI:HP0711 conserved hypothetical protein	Putative uncharacterized protein	Putative	hypothetical protein	Competence protein ComGF	hydrolase	conserved hypothetical protein	conserved hypothetical protein Function unclear	conserved hypothetical protein	Hypothetical protein	hydrolase (HAD superfamily) KEGG: tth:TTC1884 hydrolase (HAD superfamily)	Metal dependent phosphohydrolase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Metal dependent phosphohydrolase	Hydrolase	Hydrolase	Hydrolase	Cytoplasmic HAD superfamily hydrolase	Hydrolase	Putative uncharacterized protein	Putative uncharacterized protein	Hydrolase	Putative uncharacterized protein	HD domain protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00695	Putative uncharacterized protein	

HELPY00696	RNA polymerase sigma-54 factor	DNA-directed RNA polymerase sigma-54 factor (sigma-L)	RNA polymerase sigma-54 factor	RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation	CDS_ID OB2441 RNA polymerase sigma-54 factor	Putative RNA polymerase sigma-54 factor	RNA POLYMERASE SIGMA-54 FACTOR rpoN	RNA polymerase sigma 54 subunit, RpoN	RNA polymerase sigma factor	DNA-directed RNA polymerase specialized sigma subunits, sigma54 homologs	DNA-directed RNA polymerase specialized sigma subunit	RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor	Residues 1 to 477 of 477 are 99 pct identical to residues 1 to 477 of a 477 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289776.1 RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation	RNA Polymerase Sigma-54	RNA polymerase sigma-54 factor	Sigma-54 factor family	RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor (sigma-L)	conserved gene RNA polymerase signma-54 factor RpoN	RNA polymerase sigma-54 factor (sigma-L)	DNA-directed RNA polymerase, sigma factor 54	identified by similarity to SP:P26979; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963 RNA polymerase sigma-54 factor	RNA polymerase N (Sigma54) factor	identified by similarity to SP:P24255; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963 RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor	InterProMatches:IPR000394; Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription initiation (GO:0006352) RNA polymerase sigma-54 factor (sigma-L)	DNA-directed RNA polymerase sigma-54 factor sigma-L	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark RNA polymerase sigma-54 factor	
HELPY00697	ABC transporter, ATP-binding protein	ABC-type transport system, ATPase component	Probable ABC transporter ATP-binding protein	Probable ABC transporter ATP-binding protein yhbG	ATP-binding protein of ABC transporter	identified by similarity to OMNI:NMB0356; match to protein family HMM PF00005 ABC transporter, ATP-binding protein	Amino acid ABC transporter	ABC-transporter ATP-binding protein	Putative abc transporter, ATP-binding protein	Probable ABC transporter ATP-binding protein	Unclassified ABC-type transport system, ATPase component	ABC transporter related	ABC transporter, ATP-binding protein	putative ABC transporter ATP-binding component similarity:fasta; with=UniProt:Q52785 (EMBL:RL23471); Rhizobium leguminosarum (biovar phaseoli).; ABC-type permease homolog.; length=258; id 98.450; 258 aa overlap; query 9-266; subject 1-258	probable amino acid ABC transporter, ATP-binding protein similar to AGR_C_582p [Agrobacterium tumefaciens] Similar to swissprot:Q8UIG4 Putative location:bacterial cytoplasm Psort-Score: 0.4270; go_component: membrane [goid 0016020]; go_function: ATP binding [goid 0005524]; go_function: nucleotide binding [goid 0000166]; go_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; go_process: transport [goid 0006810]	ABC transporter related	ABC transporter, ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter-related protein	ABC transporter related	ABC transporter related	ABC-transporter ATP-binding protein identified by match to protein family HMM PF00005	ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein High confidence in function and specificity	ABC transporter, ATP-binding protein identified by match to protein family HMM PF00005	Probable ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein identified by match to protein family HMM PF00005	ABC transporter ATP-binding protein	Putative transport protein	
HELPY00698	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to OMNI:NTL01HP00650; match to protein family HMM PF02367; match to protein family HMM TIGR00150 conserved hypothetical protein TIGR00150	putative ATPase or kinase	Putative uncharacterized protein	Putative	hypothetical protein, similar to ATPase or kinase	identified by similarity to GB:BAB81870.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150 conserved hypothetical protein TIGR00150	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein, UPF0079	Predicted ATPase or kinase	conserved hypothetical protein identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150	conserved hypothetical protein Function unclear	conserved hypothetical protein TIGR00150 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative ATP/GTP-binding protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Predicted ATPase or kinase	Putative uncharacterized protein	
HELPY00699	DNA polymerase III gamma and tau subunits	DNA polymerase III gamma and tau subunits DnaX	DNA POLYMERASE III SUBUNITS GAMMA AND TAU	DNA polymerase III, tau subunit	DNA polymerase III gamma and tau subunits	DNA polymerase III gamma/tau subunit identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397	DNA polymerase III subunits gamma and tau DNA polymerase III subunit tau (EC 2.7.7.7) [Contains: DNA polymerase III subunit gamma] High confidence in function and specificity	DNA polymerase III, gamma/tau subunits identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397	DNA polymerase III, gamma/tau subunits	DNA polymerase III, gamma/tau subunits	DNA polymerase III, gamma/tau subunits	DNA polymerase III, gamma/tau subunits	DNA polymerase III, gamma and tau subunits	Protein EbsC	DNA polymerase III subunits gamma and tau	DNA polymerase III, subunits gamma and tau	DNA polymerase III, gamma and tau subunits	DNA polymerase III gamma and tau subunits	DNA polymerase III subunit gamma/tau	
HELPY00700	Conserved hypothetical integral membrane protein	LysE family protein	TRANSPORTER, LysE family	LysE/YggA family protein	Lysine exporter protein	Arginine exporter protein argO	similar to X96471-2|CAA65324.2| percent identity: 71 in 228 aa lysine exporter protein	BH0431 protein	SC5F8.18, possible membrane transport protein, len: 204 aa. Highly similar to many including: Corynebacterium glutamicum SW:LYSE_CORGL(EMBL:X96471) lysine exporter protein, LysE (236 aa), fasta scores opt: 201 z-score: 247.8 E(): 2.5e-06 34.8% identity in 224 aa overlap and to many hypothetical proteins e.g. Mycobacterium tuberculosis SW:YW33_MYCTU(EMBL:Z74025) (199 aa), fasta scores opt: 668 z-score: 801.1 E(): 0 54.0% identity in 200 aa overlap.  Contains a Pfam match to entry PF01810 LysE, LysE type translocator and multiple possible membrane spanning hydrophobic domains. putative membrane transport protein.	Lysine efflux permease	Residues 1 to 186 of 186 are 100 pct identical to residues 26 to 211 of a 211 aa protein from Escherichia coli O157:H7 ref: NP_311821.1 orf, conserved hypothetical protein	Arginine exporter protein argO	Similar to transporter, LysE family	Arginine exporter protein argO	Similar to transporter, LysE family hypothetical protein	conserved gene transporter, LysE family	Similar to transporter, LysE family hypothetical protein	Amino acid efflux protein	identified by similarity to SP:P94633; match to protein family HMM PF01810 L-lysine exporter, putative	Probable transporter, LysE family	Amino acid efflux protein	lysine efflux permease	IPR001123: Lysine exporter protein (LYSE/YGGA); IPR004777: L-lysine exporter putative LYSE family, amino acid transport protein	similar to Salmonella typhi CT18 possible membrane transport protein possible membrane transport protein	similar to BR0674, transporter, LysE family transporter, LysE family	Membrane transport protein	conserved hypothetical protein	Putative	Arginine exporter protein argO	
HELPY00701	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY00703	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY00704	Probable L-asparaginase	Periplasmic L-asparaginase II	Putative L-asparaginase	Periplasmic L-asparaginase II	Residues 1 to 348 of 348 are 99 pct identical to residues 1 to 348 of a 348 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289529.1 periplasmic L-asparaginase II	Putative L-asparaginase II	L-asparaginase II	AnsA	L-asparaginase	Probable L-asparaginase	Mb1565c, ansA, len: 326 aa. Equivalent to Rv1538c, len: 326 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 326 aa overlap). Probable ansA, L-aparaginase, most similar to ASPG_BACLI|P30363 L-asparaginase (322 aa), FASTA scores: opt: 417, E(): 8.8e-19, (30.9% identity in 314 aa overlap). Contains PS00917 Asparaginase / glutaminase active site signature 2. Probable L-aparaginase ansA	IPR004550: L-asparaginase, type II; IPR006034: Asparaginase/glutaminase periplasmic L-asparaginase II	similar to Salmonella typhi CT18 L-asparaginase L-asparaginase	similar to BR1960, L-asparaginase type II, hypothetical L-asparaginase type II, hypothetical	Probable L-asparaginase	Putative L-asparaginase II	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme glutaminase-asparaginase	COG0252 periplasmic L-asparaginase II	L-asparaginase	Similar to Escherichia coli L-asparaginase II precursor AnsB or B2957 SWALL:ASG2_ECOLI (SWALL:P00805) (348 aa) fasta scores: E(): 2.4e-69, 59.42% id in 350 aa, and to Bacteroides thetaiotaomicron L-asparaginase II precursor BT2757 SWALL:Q8A446 (EMBL:AE016937) (352 aa) fasta scores: E(): 3.6e-107, 84.65% id in 352 aa putative L-asparaginase II precursor	L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D AnsB protein	Glutaminase-asparaginase	Similar to ASG2_HAEIN (P43843) Probable L-asparaginase periplasmic [Precursor] from Haemophilus influenzae (349 aa). FASTA: opt: 897 Z-score: 1034.7 E(): 9.6e-50 Smith-Waterman score: 897; 43.966 identity in 348 aa overlap. No signal peptide predicted Periplasmic L-asparaginase II precursor	Periplasmic L-asparaginase II	L-asparaginase II	L-asparaginase	identified by similarity to SP:O68897; match to protein family HMM PF00710; match to protein family HMM TIGR00520 glutaminase-asparaginase	L-asparaginase, type II	Code: EJ; COG: COG0252 periplasmic L-asparaginase II	
HELPY00705	Anaerobic C4-dicarboxylate transporter dcuA	C4-dicarboxylate transporter, anaerobic	Anaerobic C4-dicarboxylate transporter	identified by similarity to EGAD:17984; match to protein family HMM PF03605 anaerobic C4-dicarboxylate membrane transporter	Anaerobic C4-dicarboxylate membrane transporter protein	Anaerobic dicarboxylate transport	identified by similarity to SP:P04539; match to protein family HMM PF03605; match to protein family HMM TIGR00770 anaerobic C4-dicarboxylate membrane transporter DcuA	Anaerobic C4-dicarboxylate transporter DcuB	Anaerobic C4-dicarboxylate transporter dcuA	anaerobic C4-dicarboxylate transporter	hypothetical protein, similar to anaerobic C4-dicarboxylate membrane transporter	anaerobic C4-dicarboxylate transport protein	anaerobic C4-dicarboxylate transporter DcuA identified by match to protein family HMM PF03605; match to protein family HMM TIGR00770	Anaerobic C4-dicarboxylate transporter dcuA High confidence in function and specificity	anaerobic C4-dicarboxylate transporter DcuA identified by match to protein family HMM PF03605; match to protein family HMM TIGR00770	Anaerobic c4-dicarboxylate membrane transporter	anaerobic C4-dicarboxylate membrane transporter DcuA identified by match to protein family HMM PF03600; match to protein family HMM PF03605; match to protein family HMM TIGR00770	anaerobic c4-dicarboxylate antiporter, Dcu family TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family PFAM: anaerobic c4-dicarboxylate membrane transporter; C4-dicarboxylate anaerobic carrier; Citrate transporter KEGG: dps:DP0353 probable anaerobic C4-dicarboxylate transporter (DcuA)	Anaerobic c4-dicarboxylate antiporter, Dcu family	Anaerobic c4-dicarboxylate antiporter, Dcu family	Anaerobic C4-dicarboxylate membrane transporter DcuA	Anaerobic c4-dicarboxylate antiporter, Dcu family	TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family PFAM: anaerobic c4-dicarboxylate membrane transporter KEGG: sfr:Sfri_0681 anaerobic C4-dicarboxylate antiporter, Dcu family protein anaerobic c4-dicarboxylate antiporter, Dcu family	KEGG: vfi:VF2354 anaerobic C4-dicarboxylate transporter anaerobic C4-dicarboxylate transporter	Putative uncharacterized protein	Anaerobic C4-dicarboxylate transporter	Anaerobic C4-dicarboxylate transporter DcuA	Conserved protein YitK	Anaerobic C4-dicarboxylate transporter DcuA	

HELPY00706	Putative uncharacterized protein	outer membrane protein	putative outer membrane protein hypothetical protein	Outer membrane protein	Outer membrane protein	Outer membrane protein	
HELPY00707	Probable tRNA-dihydrouridine synthase	hypothetical protein	transcriptional regulator involved in nitrogen regulation (NifR3/Smm1 family)	Putative dihydrouridine synthase	Putative transcriptional regulator	Dihydrouridine synthase	TIM-barrel enzyme, NifR3 family	NITROGEN REGULATION PROTEIN NIFR3	Putative uncharacterized protein	tRNA-dihydrouridine synthase B	Putative exported protein	tRNA-dihydrouridine synthase B	similar to AX065971-1|CAC26225.1| percent identity: 92 in 381 aa putative transcription regulator	nitrogen reguration protein nifR3 protein	Putative uncharacterized protein	Putative nitrogen regulation protein nifR3	NifR3 family enzyme	Transcriptional regulator involved in nitrogen regulation	TRNA dihydrouridine synthetase	SCC82.03c, hypothetical protein, len: 406 aa; similar to varous hypothetical proteins, e.g.  SW:Y823_MYCTU (EMBL:AL022004) Mycobacterium tuberculosis hypothetical 41.4 kD protein RV0823c, 389 aa; fasta scores: opt: 1153 z-score: 1349.3 E(): 0; 56.2% identity in 406 aa overlap. Contains Pfam match to entry PF01207 UPF0034, Uncharacterized protein family UPF0034 and match to Prosite entry PS01136 Uncharacterized protein family UPF0034 signature conserved hypothetical protein SCC82.03c	Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family	tRNA-dihydrouridine synthase B	Probable tRNA-dihydrouridine synthase	Lin0259 protein	NifR3-like protein	Residues 1 to 321 of 321 are 99 pct identical to residues 1 to 321 of a 321 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289828.1 putative dehydrogenase	Predicted oxidoreductase	tRNA-dihydrouridine synthase B	Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family	
HELPY00708	tRNA(Ile)-lysidine synthase	identified by match to protein family HMM PF01171 PP-loop family protein	tRNA(Ile)-lysidine synthase	tRNA(Ile)-lysidine synthase	tRNA(Ile)-lysidine synthase	tRNA(Ile)-lysidine synthase	tRNA(Ile)-lysidine synthetase-like	MesJ protein	hypothetical protein	predicted ATPase of the PP-loop superfamily implicated in cell cycle control	Hypothetical protein	conserved hypothetical protein This family of proteins belongs to the PP-loop superfamily (MEDLINE:7731953) for which no biological role has been determined; identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	conserved hypothetical protein Function unclear	TilS tRNA(Ile)-lysidine synthetase	tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	tRNA-lysidine synthase	tRNA-lysidine synthase	tRNA(Ile)-lysidine synthetase	Putative uncharacterized protein	tRNA(Ile)-lysidine synthase	YacA	Putative cell cycle protein	PP-loop family	tRNA(Ile)-lysidine synthase	tRNA(Ile)-lysidine synthase	tRNA(Ile)-lysidine synthase	tRNA(Ile)-lysidine synthase	Putative uncharacterized protein	
HELPY00709	Putative uncharacterized protein	hypothetical protein	putative ATP /GTP binding protein hypothetical protein	conserved hypothetical protein, authentic frameshift	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	ATP/GTP binding protein	
HELPY00710	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00711	Putative uncharacterized protein	GTP-binding protein, HSR1-like	labile enterotoxin output A	GTP-binding protein, HSR1-related PFAM: GTP-binding protein, HSR1-related KEGG: pfo:Pfl_2664 GTP-binding protein, HSR1-like	labile enterotoxin output A KEGG: hpa:HPAG1_0715 labile enterotoxin output A	Putative uncharacterized protein	GTP-binding protein HSR1-related	ATP/GTP binding protein	

HELPY00713	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00714	Ribosomal protein S12 methylthiotransferase rimO	hypothetical protein	MiaB-like tRNA modifying enzyme YliG, TIGR01125	Ribosomal protein S12 methylthiotransferase rimO	Fe-S OXIDOREDUCTASE	Ribosomal protein S12 methylthiotransferase rimO	Ribosomal protein S12 methylthiotransferase rimO	hypothetical protein	Ribosomal protein S12 methylthiotransferase rimO	Ribosomal protein S12 methylthiotransferase rimO	Ribosomal protein S12 methylthiotransferase rimO	SC7C7.07, unknown, len: 493 aa; similar to many members of the UPF0004 family e.g. YLIG_ECOLI (441 aa), fasta scores; opt: 642 z-score: 947.7 E(): 0, 31.8% identity in 487 aa overlap. Contains PS01278 Uncharacterized protein family UPF0004 signature. Also similar to S. coelicolor SC4H2.08, fasta scores; E(): 9.1e-23, 30.3% identity in 445 aa overlap conserved hypothetical protein SC7C7.07	Ribosomal protein S12 methylthiotransferase rimO	Ribosomal protein S12 methylthiotransferase rimO	hypothetical protein	Ribosomal protein S12 methylthiotransferase rimO	Residues 1 to 441 of 441 are 99 pct identical to residues 1 to 441 of a 441 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286601.1 orf, conserved hypothetical protein	Ribosomal protein S12 methylthiotransferase rimO	Ribosomal protein S12 methylthiotransferase rimO	Similar to conserved hypothetical protein hypothetical protein	conserved gene Fe-S oxidoreductase	Similar to conserved hypothetical protein hypothetical protein	hypothetical protein	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 RNA modification enzyme, MiaB-family	Ribosomal protein S12 methylthiotransferase rimO	Ribosomal protein S12 methylthiotransferase rimO	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative uncharacterized protein TTHA1175	

HELPY00715	Xanthine guanine phosphoribosyl transferase	identified by similarity to PIR:G64611; match to protein family HMM PF00156 nucleotide phosphoribosyltransferase, putative	XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE	Guanine-hypoxanthine phosphoribosyltransferase	Phosphoribosyltransferase	xanthine guanine phosphoribosyl transferase	phosphoribosyltransferase identified by match to protein family HMM PF00156	Xanthine-guanine phosphoribosyltransferase High confidence in function and specificity	nucleotide phosphoribosyltransferase, putative identified by match to protein family HMM PF00156	Phosphoribosyltransferase	Nucleotide phosphoribosyltransferase	Xanthine phosphoribosyltransferase	Putative nucleotide phosphoribosyltransferase	Putative nucleotide phosphoribosyltransferase	Putative nucleotide phosphoribosyltransferase	Putative membrane protein	Phosphoribosyltransferase	Phosphoribosyltransferase	Phosphoribosyltransferase	Xanthine guanine phosphoribosyl transferase	Xanthine guanine phosphoribosyl transferase	Xanthine guanine phosphoribosyl transferase	Nucleotide phosphoribosyltransferase, putative	Phosphoribosyltransferase	
HELPY00716	Uncharacterized aminotransferase HP_0736	2-aminoethylphosphonate-pyruvate transaminase	probable serine-glyoxylate aminotransferase	SCD19.21, possible phosphoserine aminotransferase, len: 363 aa; similar to SW:SERC_MYCTU (EMBL:Z73101) Mycobacterium tuberculosis putative phosphoserine aminotransferase (EC 2.6.1.52) Serc or MTCY31.12c, 376 aa; fasta scores: opt: 1693 z-score: 1994.6 E(): 0; 66.9% identity in 363 aa overlap putative phosphoserine aminotransferase	Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase	probable serine--glyoxylate aminotransferase, class V	identified by match to protein family HMM PF00266 aminotransferase, class V	identified by similarity to SP:O08374; match to protein family HMM PF00266 serine--glyoxylate transaminase, putative	Hypothetical protein	Serine-pyruvate/aspartate aminotransferase related enzyme	Aspartate aminotransferase, subgroup IV	Putative uncharacterized protein	hypothetical protein, similar to soluble hydrogenase 42 kD subunit	Putative aminotransferase JHP0673	Ortholog of S. aureus MRSA252 (BX571856) SAR1800 putative soluble hydrogenase subunit	BELONGS TO CLASS-V OF PYRIDOXAL-PHOSPHATE-DEPENDENT AMINOTRANSFERASES soluble hydrogenase small subunit	serine-glyoxylate aminotransferase	Serine--glyoxylate aminotransferase	Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase	Probable serine-glyoxylate aminotransferase, class V	identified by similarity to SP:P16421 soluble hydrogenase, tritium exchange subunit	Aminotransferase, class V	Similar to Synechococcus sp soluble hydrogenase, small subunit SW:DHSS_SYNP1 (P14776) (384 aa) fasta scores: E(): 2.2e-50, 39.68% id in 383 aa, and to Anabaena cylindrica soluble hydrogenase subunit SW:DHSS_ANACY (P16421) (383 aa) fasta scores: E(): 1.6e-49, 38.25% id in 379 aa putative soluble hydrogenase subunit	phosphoserine aminotransferase, Mycobacterial type	aminotransferase, class V	aminotransferase class V (Serine--pyruvate aminotransferase (EC 2.6.1.51) 2; Alanine--glyoxylate aminotransferase (EC 2.6.1.44) 2)	Serine-pyruvate/aspartate aminotransferase related enzyme	soluble hydrogenase, tritium exchange subunit	identified by match to protein family HMM PF00266 aminotransferase, class V	
HELPY00717	Conserved hypothetical integral membrane protein	Phosphatidylglycerophosphatase	Phosphatidylglycerophosphatase A	Residues 6 to 177 of 177 are 98 pct identical to residues 1 to 172 of a 172 aa protein from Escherichia coli K12 ref: NP_414952.1 phosphatidylglycerophosphatase	Phosphatidylglycerophosphatase A	PgpA protein	Probable phosphatidyl-glycerophosphatase hydrolase transmembrane protein	Phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	conserved gene phosphatidylglycerophosphatase A (PgpA)	Phosphatidylglycerophosphatase A	identified by similarity to SP:P18200; match to protein family HMM PF04608 phosphatidylglycerophosphatase, putative	Phosphatidylglycerophosphatase	identified by similarity to SP:P18200; match to protein family HMM PF04608 phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	phosphatidylglycerophosphatase A	similar to Salmonella typhi CT18 phosphatidylglycerophosphatase A phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	PHOSPHATIDYLGLYCEROPHOSPHATASE A	Phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	Similar to rc||pgpA; Ortholog to ERGA_CDS_01950 Phosphatidylglycerophosphatase A	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme phosphatidylglycerophosphatase A	COG1267 PgpA phosphatidlglycerophosphatase A; go_process: 0006629 phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	phosphatidylglycerophosphatase A	Similar to: HI1306, PGPA_HAEIN phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A PgpA protein	Phosphatidylglycerophosphatase A	
HELPY00718	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine-D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase B	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	CDS_ID OB1306 D-alanine-D-alanine ligase A	similar to AF077728-1|AAC99396.1| percent identity: 54 in 360 aa putative D-alanine--D-alanine ligase	D-alanine-D-alanine ligase A	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	Putative D-alanyl-D-alanine ligase A	D-alanine--D-alanine ligase	D-alanine:D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	
HELPY00719	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase	identified by similarity to OMNI:HP0739 conserved hypothetical protein	Putative uncharacterized protein	Putative	hydrolase, alpha/beta fold family, putative identified by match to protein family HMM PF00561	Alpha/beta hydrolase fold	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase	alpha/beta hydrolase fold	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase Function unclear	conserved hypothetical protein identified by match to protein family HMM PF00561	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase	Putative uncharacterized protein	Putative uncharacterized protein	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase	Alpha/beta hydrolase fold	Alpha/beta hydrolase fold	Alpha/beta hydrolase fold	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase	2-hydroxy-6-oxohepta-2,4-dienoatehydrolase	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase	Putative hydrolase, alpha/beta fold family	Carboxylesterase BioH	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase	Putative uncharacterized protein	
HELPY00720	UDP-MurNac-pentapeptide presynthetase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase	deleted EC_number 6.3.2.15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875 Mur ligase family protein	InterProMatches:IPR005863; Cellular Component: cytoplasm (GO:0005737), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766) UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase	COG0770 UDP-N-acetylmuramyl pentapeptide synthase d-ala-d-ala adding enzyme	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	D-ALANYL-D-ALANINE-ADDING ENZYME	putative assignment Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic...	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme)	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase	Similar to Streptomyces toyocaensis probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase MurF or MurX SWALL:MURF_STRTO (SWALL:O33804) (443 aa) fasta scores: E(): 2.5e-30, 31.44% id in 442 aa, and to Escherichia coli UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase MurF or Mra or b0086 SWALL:MURF_ECOLI (SWALL:P11880) (452 aa) fasta scores: E(): 3.3e-28, 31.41% id in 382 aa probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	Mur ligase family, glutamate ligase domain protein identified by match to protein family HMM PF02875	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase COG0770 [M] UDP-N-acetylmuramyl pentapeptide synthase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	UDP-MurNac-pentapeptide presynthetase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase	
HELPY00721	Putative uncharacterized protein	Putative uncharacterized protein	similar to AF265558-2|AAG17335.1| percent identity: 56 in 198 aa conserved hypothetical protein	Putative uncharacterized protein	SCL2.20c, hypothetical HIT family protein, len: 186 aa; similar to TR:O06201 (EMBL:Z95387) Mycobacterium tuberculosis hypothetical 21.8 kD protein MTCY01A10.20A, 195 aa; fasta scores: opt: 638 z-score: 762.0 E(): 0; 52.8% identity in 176 aa overlap and to TR:CAB48988 (EMBL:AJ248283) Pyrococcus abyssi HIT family protein, 185 aa; fasta scores: opt: 498 z-score: 597.6 E(): 6.8e-26; 45.1% identity in 164 aa overlap. similar also to TR:Q9F7Z0 (EMBL:AF265558) Mycobacterium smegmatis hypothetical protein 205 aa; fasta scores: opt: 653 Z-score: 762.7 E(): 7.5e-35; 52.432% identity in 185 aa overlap. Contains Pfam match to entry PF01230 HIT, HIT family conserved hypothetical protein SCL2.20c	Putative uncharacterized protein	Hydrolase	probable bis(5'-adenosyl)-triphosphatase, HIT family	identified by match to protein family HMM PF01230 Hit family protein	Putative uncharacterized protein	HIT family protein	Mb2645c, -, len: 195 aa. Equivalent to Rv2613c, len: 195 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 195 aa overlap). Conserved hypothetical protein, equivalent to Q9CCU0|ML0455 HYPOTHETICAL PROTEIN from Mycobacterium leprae (206 aa), FASTA scores: opt: 1074, E(): 7.4e-62, (84.7% identity in 196 aa overlap); and highly similar, but longer 18 aa, to O07150|MLCL581.17c HYPOTHETICAL 20.7 KDA PROTEIN from Mycobacterium leprae (186 aa), FASTA scores: opt: 1038, E(): 1.4e-59, (89.7% identity in 175 aa overlap). Also highly similar to other hypothetical proteins (often Hit family member) e.g. Q9F7Z0 from Mycobacterium smegmatis (see citation below) (205 aa), FASTA scores: opt: 975, E(): 1.6e-55, (79.35% identity in 184 aa overlap); Q9L279|SCL2.20 from Streptomyces coelicolor (186 aa), FASTA scores: opt: 638, E(): 5.8e-34, (52.85% identity in 176 aa overlap); Q9YFX8|APE0122 from Aeropyrum pernix (184 aa), FASTA scores: opt: 515, E(): 4.4e-26, (45.9% identity in 159 aa overlap); etc. It seems the Rv2613c and downstream ORF Rv2612c|psgA1 are expressed from the same promoter (see citation below) and that Rv2613c should be involved in lipid metabolism. CONSERVED HYPOTHETICAL PROTEIN	Putative uncharacterized protein	HIT FAMILY PROTEIN	HIT family protein	Similar to Streptomyces coelicolor hypothetical HIT family protein SCL2.20c or SCO1530 SWALL:Q9L279 (EMBL:AL137778) (186 aa) fasta scores: E(): 7.6e-35, 50% id in 168 aa conserved hypothetical protein	HIT family hydrolase	Hypothetical bis(5'-adenosyl)-triphosphatase	conserved hypothetical protein	identified by match to protein family HMM PF01230 HIT domain protein	conserved hypothetical protein	probable histidine triad (HIT) hydrolase 1 (probable bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17))	HIT domain protein	HIT (HINT, histidine triad) family protein	Histidine triad (HIT) protein	HIT domain protein identified by match to protein family HMM PF01230	histidine triad (HIT) protein	Histidine triad (HIT) protein	Hit family protein	
HELPY00722	Ribose-phosphate pyrophosphokinase	ribose-phosphate pyrophosphokinase	ribose-phosphate pyrophosphokinase (phosphoribosyl pyrophosphate synthetase)	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase 1	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase 1	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	CDS_ID OB0059; PRPP synthetase ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	similar to AE006987-10|AAK45296.1| percent identity: 71 in 325 aa putative ribose-phosphate pyrophosphokinase	Probable phosphoribosyl pyrophosphate synthetase	ribose-phosphate pyrophosphokinase	Phosphoribosyl pyrophosphate synthetase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	Ribose-phosphate pyrophosphokinase	
HELPY00723	Rod shape-determining protein rodA	Rod shape-determining protein RodA	Rod shape-determining protein rodA	Rod shape-determining protein	Bacterial cell division membrane protein	ROD SHAPE-DETERMINING PROTEIN RODA	Lin2521 protein	Residues 1 to 370 of 370 are 100 pct identical to residues 1 to 370 of a 370 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286360.1 rod shape-determining membrane protein; sensitivity to radiation and drugs	Rod Shape Protein	Rod shape-determining protein	Cell cycle proteins	MrdB protein	Probable rod shape-determining (Roda protein) transmembrane	Rod shape-determining protein RodA	identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 rod shape-determining protein MreD	Bacterial cell division membrane protein	identified by similarity to PIR:C81336; match to protein family HMM PF01098 rod shape-determining protein RodA, putative	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark rod shape-determining protein	IPR001182: Cell cycle protein rod shape-determining membrane protein; cell elongation in e phase	similar to Salmonella typhi CT18 rod shape-determining protein RodA rod shape-determining protein RodA	Bacterial cell division membrane protein FtsW/MrdB/SpoVE	Rod shape-determining protein	Rod shape-determining protein rodA	Rod shape-determining protein	Rod shape-determining protein	identified by match to protein family HMM PF01098 cell division protein, FtsW/RodA/SpoVE family	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type ph : phenotype rod shape-determining protein	Rod shape-determining protein RodA	RodA, cell division membrane protein; COG0772 rod shape-determining protein	


HELPY00724	Uncharacterized RNA pseudouridine synthase HP_0745	Putative uncharacterized protein	Pseudouridine synthase	Putative uncharacterized protein	ribosomal large subunit pseudouridine synthase D	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthases, RluD subfamily	Ribosomal pseudouridine synthase	Hypothetical RNA pseudouridine synthase JHP0682	Pseudouridine synthase	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthase, RluD subfamily	pseudouridylate synthase	identified by sequence similarity; putative; ORF located using Blastx; COG0564 ribosomal large subunit pseudouridine synthase D	identified by sequence similarity; putative; ORF located using Blastx; COG0564 ribosomal large subunit pseudouridine synthase D	identified by match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthase, RluD subfamily	ribosomal large subunit pseudouridine synthase,RluD subfamily	Ribosomal large subunit pseudouridine synthase D	pseudouridine synthase D	Pseudouridylate synthase	Pseudouridine synthase, RluD	Hypothetical protein	Pseudouridylate synthase cytoplasmic protein	pseudouridine synthase High confidence in function and specificity	pseudouridine synthase, RluA-family membrane protein pseudouridine synthase (pseudouridylate synthase) (uracil hydrolyase)[catalytic activity] uracil + D-ribose 5-phosphate = pseudouridine 5'-phosphate + H(2)O.	RluD protein	ribosomal large subunit pseudouridine synthases, RluA family identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005	Pseudouridylate synthase, 23S RNA-specific	Pseudouridylate synthase, 23S RNA-specific	Ribosomal large subunit pseudouridine synthase D	Pseudouridine synthase	
HELPY00725	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Fibronectin, type III	hypothetical protein	fibronectin type III domain protein identified by match to protein family HMM PF00041	putative fibronectin domain-containing lipoprotein PUTATIVE FIBRONECTIN DOMAIN-CONTAINING LIPOPROTEIN Function unclear	fibronectin type III domain protein identified by match to protein family HMM PF00041	Fibronectin, type III	Fibronectin type III domain protein	Fibronectin type III domain protein	Fibronectin type III domain protein	Fibronectin type III domain protein	Putative uncharacterized protein	Putative uncharacterized protein	Fibronectin, type III	Fibronectin type III domain protein	Fibronectin domain-containing lipoprotein	Putative uncharacterized protein	Putative fibronectin domain-containing lipoprotein	
HELPY00726	tRNA (guanine-N(7)-)-methyltransferase	tRNA (guanine-N(7)-)-methyltransferase	tRNA (guanine-N(7)-)-methyltransferase	tRNA (guanine-N(7)-)-methyltransferase	S-adenosylmethionine-dependent methyltransferase	tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase) identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091	tRNA (guanine-N7-)-methyltransferase High confidence in function and specificity	tRNA (guanine-N(7)-)-methyltransferase identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091	tRNA (Guanine-N(7)-)-methyltransferase	tRNA (Guanine-N(7)-)-methyltransferase	tRNA (Guanine-N(7)-)-methyltransferase precursor	tRNA (guanine-N(7)-)-methyltransferase	tRNA (Guanine-N7-)-methyltransferase	Putative uncharacterized protein	tRNA (Guanine-N(7)-)-methyltransferase	tRNA (Guanine-N(7)-)-methyltransferase	tRNA (Guanine-N(7))-methyltransferase	S-adenosyl methionine-dependent methyltransferase	tRNA (Guanine-N(7)-)-methyltransferase	tRNA (Guanine-N(7)-)-methyltransferase	S-adenosylmethionine-dependent methyltransferase	tRNA (Guanine-N(7)-)-methyltransferase	Putative tRNA (Guanine-N(7)-)-methyltransferase	
HELPY00727	Cell division protein	cell division protein	cell division ABC transporter, ATP-binding protein FtsE ftsE; cell division protein High confidence in function and specificity	Cell division protein	Cell division protein	Cell division protein FtsE	
HELPY00728	Cell division membrane protein	Cell division protein FtsX	Putative	Putative uncharacterized protein	cell division membrane protein	cell division protein FtsX	cell division protein FtsX (P95357) Cell division protein ftsX homolog High confidence in function and specificity	cell division protein FtsX, putative	Cell division protein FtsX	Cell division protein FtsX	Putative cell division protein FtsX	Putative integral membrane protein	Cell division protein FtsX	Cell division protein FtsX	Cell division protein FtsX	Cell division protein FtsX	Cell division membrane protein	Cell division membrane protein	Putative cell division protein FtsX	Cell division protein FtsX	Cell division protein FtsX	ABC-type transport system, permease component; Putative cell division protein FtsX; putative membrane protein	
HELPY00729	Putative uncharacterized protein	similar to membrane-bound metallopeptidase hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	identified by match to protein family HMM PF01551 peptidase, M23/M37 family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative membrane protein	Similar to: HI0756, YIBP_HAEIN predicted membrane-bound metallopeptidase	Membrane proteins related to metalloendopeptidases NlpD protein	conserved hypothetical protein	probable membrane protein	identified by similarity to GB:BAB81320.1; match to protein family HMM PF01551 peptidase, M23/M37 family	Evidence 4 : Homologs of previously reported genes of unknown function; PubMedId : 12113939 conserved protein of unknown function ; putative protease	Peptidase M23B	M23 peptidase domain protein identified by match to protein family HMM PF01551	peptidase, M23B family identified by match to protein family HMM PF01551	peptidase M23B	Peptidase M23B	putative peptidase	hypothetical protein	Putative membrane protein	Peptidase M23B precursor	conserved hypothetical protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	peptidase, M23/M37 family identified by match to protein family HMM PF01551	Membrane protein	conserved hypothetical protein Function unclear	
HELPY00730	Polar flagellin	putative polar flagellin	flagellin protein flagellin FlaG, putative Function unclear	Flagellar protein FlaG protein	Flagellar protein FlaG	Putative polar flagellin	Polar flagellin	Polar flagellin	Flagellar protein FlaG	Flagellar protein FlaG protein	

HELPY00732	Flagellar protein	Essential polar flagellar protein	CDS_ID OB2500 flagellar protein	Flagellar protein FliS	Flagellar protein FliS	Flagellar protein	Flagellar protein	Flagellin-specific chaperone FlaJ	FliS	Probable flagellar protein flis	Similar to flagellar protein FliS hypothetical protein	conserved gene flagellar protein FliS	Similar to flagellar protein FliS hypothetical protein	Probable flagellar protein FliS	identified by similarity to SP:P39739; match to protein family HMM PF02561; match to protein family HMM TIGR00208 flagellar protein FliS	InterProMatches:IPR003713; Cellular Component: flagellum (sensu Bacteria) (GO:0009288), Biological Process: flagellum biogenesis (GO:0009296) flagellar protein FliS	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar protein	flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)	similar to Salmonella typhi CT18 flagellar protein FliS flagellar protein FliS	Flagellin FlaA and FlaB chaperone protein FliS	Flagellar protein	Putative FLAGELLAR PROTEIN	Flagellar protein	flagellar protein FliS	Flagellin-specific chaperone FliS	Flagellar protein fliS	flagellar protein	identified by similarity to GB:AAT42123.1; match to protein family HMM PF02561; match to protein family HMM TIGR00208 flagellar protein FliS	Flagellar protein FliS	
HELPY00733	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00734	Molybdopterin biosynthesis protein	hypothetical conserved protein	HesA/MoeB/ThiF family protein	Dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis family 1	BH1255 protein	Similar to molybdopterin biosynthesis MoeB protein	identified by match to protein family HMM PF00899 HesA/MoeB/ThiF family protein	Probable HesA/MoeB/ThiF family protein	Hypothetical protein	identified by match to protein family HMM PF00899 thiF family protein	conserved protein Molybdenum cofactor biosynthesis	Molybdopterin and thiamine biosynthesis family 1 dinucleotide-utilizing enzyme	Putative uncharacterized protein	conserved hypothetical protein	Putative	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1708 conserved hypothetical protein	conserved hypothetical protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative enzyme NAD(P)-binding	molybdopterin biosynthesis MoeB protein	homolog of dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; Similar to: HI0118, YGDL_HAEIN conserved hypothetical protein	Similar to Bacteroides thetaiotaomicron ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis BT3639 SWALL:AAO78744 (EMBL:AE016941) (238 aa) fasta scores: E(): 3.3e-78, 87.17% id in 234 aa, and to Fusobacterium nucleatum molybdopterin biosynthesis MoeB protein FN0725 SWALL:Q8RFH3 (EMBL:AE010583) (234 aa) fasta scores: E(): 6.3e-27, 40.61% id in 229 aa, and to Staphylococcus aureus hypothetical protein sav1628 or sa1455 or mw1578 SWALL:Q99TM1 (EMBL:AP003363) (257 aa) fasta scores: E(): 2.1e-25, 35% id in 240 aa putative ThiF family protein	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Hypothetical protein	ThiF family protein	Similar to Q8XPA8 Hypothetical protein CPE0057 from Clostridium perfringens (253 aa). FASTA: opt: 568 Z-score: 689.2 E(): 1.7e-30 Smith-Waterman score: 568; 46.961 identity in 181 aa overlap. Contains an in-frame stop codon after aa 181 ORF ftt0539c pseudo ThiF family protein, pseudogene	similar to MoeB or ThiF	conserved hypothetical protein	hesA/moeB/thiF family protein	hypothetical protein, similar to ThiF family protein	
HELPY00736	Beta-alanine synthetase homolog	probable hydratase	Hydrolase, carbon-nitrogen family	Putative carbon-nitrogen hydrolase	Predicted amidohydrolase	Putative carbon-nitrogen hydrolase	Putative carbon-nitrogen hydrolase family protein hypothetical protein	Putative carbon-nitrogen hydrolase family protein hypothetical protein	hypothetical protein	Beta-alanine synthetase	identified by match to protein family HMM PF00795 hydrolase, carbon-nitrogen family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark beta-alanine synthetase	Putative uncharacterized protein	Beta-alanine synthetase	Putative	Putative carbon-nitrogen hydrolase	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative hydrolase	Hydrolase, carbon-nitrogen family	hydratase; COG0388 hydrolase	Similar to Bacteroides thetaiotaomicron beta-ureidopropionase BT0875 SWALL:AAO75982 (EMBL:AE016929) (294 aa) fasta scores: E(): 2.3e-116, 91.15% id in 294 aa, and to Xanthomonas axonopodis beta-alanine synthetase XAC2303 SWALL:Q8PK73 (EMBL:AE011867) (294 aa) fasta scores: E(): 3.7e-81, 65.97% id in 291 aa putative hydrolase	Similar to Q87NU4 Putative carbon-nitrogen hydrolase from Vibrio parahaemolyticus (288 aa). FASTA: opt: 1139 Z-score: 1419.0 E(): 3.8e-71 Smith-Waterman score: 1139; 57.971 identity in 276 aa overlap. Possible candidate for citrulline ureidase ORF ftt0435 Carbon-nitrogen hydrolase family protein	beta-alanine synthetase	Predicted amidohydrolase	identified by match to protein family HMM PF00795 carbon-nitrogen hydrolase family protein	identified by match to protein family HMM PF00795 hydrolase, carbon-nitrogen family	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Predicted amidohydrolase	Evidence 2b : Function of strongly homologous gene; PubMedId : 11161056; Product type e : enzyme Beta-ureidopropionase	
HELPY00737	Conserved hypothetical integral membrane protein	Conserved hypothetical integral membrane protein	CDS_ID OB0879 hypothetical protein	Na+/H+ antiporter family protein	Predicted permease	Similar to transport protein	identified by match to protein family HMM PF03553 membrane protein, putative	Probable transporter	Hypothetical protein SE0637	identified by similarity to GP:28204350; match to protein family HMM PF03553 Na+/H+ antiporter family protein	Biological Process: sodium ion transport (GO:0006814), Biological Process: regulation of pH (GO:0006885), Molecular Function: sodium:hydrogen antiporter activity (GO:0015385), Cellular Component: integral to membrane (GO:0016021) Na+/H+ antiporter YuiF	transporter	conserved hypothetical protein	Putative	Putative integral membrane protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0905 putative transporter protein	conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protein	transport protein	Similar to: HI0325, Y325_HAEIN conserved hypothetical protein	Predicted permease Hypothetical protein	Na+/H+ antiporter family protein	probable transporter	probable Na+/H+ antiporter	putative membrane protein	similar to unknown protein	identified by match to protein family HMM PF03553 Na+/H+ antiporter family protein	Similar to Escherichia coli high-affinity gluconate transporter GntT SW:GNTT_ECOLI (P39835) (437 aa) fasta scores: E(): 1.3e-05, 20.844% id in 403 aa, and to Bacillus halodurans hypothetical protein BH3359 TR:Q9K7K2 (EMBL:AP001518) (440 aa) fasta scores: E(): 2.3e-78, 49.091% id in 440 aa putative transporter protein	Best Blastp Hit: pir||D81010 conserved hypothetical protein NMB2064 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227326|gb|AAF42383.1| (AE002556) conserved hypothetical protein [Neisseria meningitidis MC58] COG2056 Predicted permease conserved hypothetical protein	
HELPY00738	Conserved hypothetical integral membrane protein	multidrug efflux protein	conserved hypothetical integral membrane protein (Q9WZS2) Probable multidrug resistance protein norM (Na(+)/drug antiporter) (Multidrug-efflux transporter) High confidence in function and specificity	Putative uncharacterized protein	Multidrug efflux protein	Putative uncharacterized protein	DNA-damage induced multidrug efflux protein	


HELPY00740	Putative uncharacterized protein	Putative	5-formyltetrahydrofolate cyclo-ligase	hypothetical protein	5,10-methenyltetrahydrofolate synthetase identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727	conserved hypothetical protein High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative 5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase	Putative uncharacterized protein	Putative uncharacterized protein	5,10-methenyltetrahydrofolate synthetase	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00741	Putative uncharacterized protein	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00742	Cell division protein ftsY homolog	Signal recognition particle-docking protein FtsY	SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY	Probable signal recognition particle	similar to cell division protein FtsY	Signal recognition particle-docking protein FtsY	Cell division protein	Putative cell division protein FtsY	Signal recognition particle GTPase, FtsY	Signal recognition particle receptor	Signal recognition particle	Signal recognition particle-docking protein FtsY	Signal recognition particle GTPase	Cell division protein FtsY	Cell division protein ftsY homolog	Lin1917 protein	Cell Division Protein FtsY	FtsY protein	Putative cell division protein	Similar to C-terminal part of signal recognition particle GTPase, FtsY hypothetical protein	conserved gene cell division membrane protein FtsY	Similar to C-terminal part of signal recognition particle GTPase, FtsY hypothetical protein	SRP family of GTP-binding proteins-cell division protein	Cell division protein FtsY	identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM TIGR00064 signal recognition particle-docking protein FtsY	signal recognition particle-docking protein FtsY signal recognition particle GTPase	Cell division protein FtsY	Signal recognition particle-docking protein FtsY	Signal recognition particle GTPase	
HELPY00743	Putative uncharacterized protein	Putative uncharacterized protein	Transmembrane protein	


HELPY00747	Molybdenum cofactor biosynthesis protein A	molybdopterin cofactor biosynthesis protein (moaA/nifB/pqqE family)	Putative molybdopterin biosynthesis protein	Molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	similar to X78980-1|CAA55583.1| percent identity: 47 in 366 aa putative molybdopterin biosynthesis protein MoaA2	molybdopterin biosynthetic protein A	Molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	SCI8.06c, moaA, molybdenum cofactor biosynthesis protein A, len: 341 aa. Highly similar to many molybdenum cofactor biosynthesis protein A's e.g. Mycobacterium tuberculosis TR:O53881 (EMBL:AL022004) MoaA-2 (360 aa), fasta scores opt: 1336 z-score: 1559.3 E(): 0 61.7% identity in 332 aa overlap and Staphylococcus carnosus TR:Q9ZIM6 (EMBL: AF022796) MoaA (340 aa), fasta scores opt: 627 z-score: 735.1 E():0 33.3% identity in 321 aa overlap. Contains Pfam match to entry PF01444 MoaA_NifB_PqqE, moaA / nifB / pqqE family and a Prosite hit to PS01305 moaA / nifB / pqqE family signature. molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	identified by similarity to EGAD:15818; match to protein family HMM PF01444; match to protein family HMM PF04055 molybdenum cofactor biosynthesis protein A	identified by similarity to SP:Q9X5W3; match to protein family HMM PF04055; match to protein family HMM PF06463 molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	identified by similarity to OMNI:SO4724; match to protein family HMM PF04055 molybdenum cofactor biosynthesis protein	Putative uncharacterized protein	InterProMatches:IPR000385; molybdopterin precursor biosynthesis,Molecular Function: catalytic activity (GO:0003824) MoaA	molybdenum cofactor biosynthesis protein A	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	molybdenum cofactor biosynthesis protein A	Molybdenum cofactor biosynthesis protein A	Ortholog of S. aureus MRSA252 (BX571856) SAR2352 putative molybdenum cofactor biosynthesis protein A	molybdenum cofactor biosynthesis protein A	
HELPY00748	Probable molybdopterin-guanine dinucleotide biosynthesis protein A	Molybdopterin-guanine dinucleotide biosynthesis protein	Probable molybdopterin-guanine dinucleotide biosynthesis protein A	Similar to: HI0844, MOBA_HAEIN probable molybdopterin-guanine dinucleotide biosynthesis protein A	Molybdopterin-guanine dinucleotide biosynthesis protein A MobA protein	Probable molybdopterin-guanine dinucleotide biosynthesis protein A	molybdopterin-guanine dinucleotide biosynthesis protein A	probable molybdopterin-guanine dinucleotide biosynthesis protein A	molybdopterin-guanine dinucleotide biosynthesis protein, putative	Molybdopterin-guanine dinucleotide biosynthesis protein A	Molybdopterin-guanine dinucleotide biosynthesis protein A	Probable molybdopterin-guanine dinucleotide biosynthesis protein A	Putative molybdopterin-guanine dinucleotide biosynthesis protein	Molybdopterin-guanine dinucleotide biosynthesis protein	Putative molybdopterin-guanine dinucleotide biosynthesis protein	Molybdopterin-guanine dinucleotide biosynthesis protein A	Putative molybdopterin-guanine dinucleotide biosynthesis protein	Molybdopterin-guanine dinucleotide biosynthesis protein A	Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein	Molybdopterin-guanine dinucleotide biosynthesis protein A	Molybdopterin-guanine dinucleotide biosynthesis protein A	Probable molybdopterin-guanine dinucleotide biosynthesis protein A	Molybdopterin-guanine dinucleotide biosynthesis protein A, putative	Molybdopterin-guanine dinucleotide biosynthesis protein A	molybdopterin-guanine dinucleotide biosynthesis protein A identified by Glimmer3; putative	Molybdopterin-guanine dinucleotide biosynthesis protein A	
HELPY00749	Flagellar biosynthetic protein flhB	Flagellar biosynthetic protein flhB	identified by similarity to SP:P35538; match to protein family HMM PF01312; match to protein family HMM TIGR00328 flagellar biosynthetic protein FlhB	InterProMatches:IPR006136; required for flagellar formation, Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020) flagella-associated protein	flagellar biosynthetic protein FlhB	Flagellar biosynthetic protein flhB	Flagellar biosynthetic protein flhB	flagellar biosynthetic protein	Code: NU; COG: COG1377 putative part of export apparatus for flagellar proteins	flagellar biosynthetic protein flhB identified by match to protein family HMM PF01312	putative flagellar biosynthetic protein FlhB	Flagellar biosynthetic protein FlhB	Flagellar biosynthetic protein FlhB	Flagellar biosynthesis pathway, component FlhB COG1377	putative flagellar biosynthetic protein similarity:fasta; with=UniProt:Q6QMS1 (EMBL:AY533375); Rhizobium lupini.; FlhB.; length=374; id 66.940; 366 aa overlap; query 1-365; subject 9-374 similarity:fasta; with=UniProt:FLHB_RHIME (EMBL:SMAJ4445); Rhizobium meliloti (Sinorhizobium meliloti).; flhB; Flagellar biosynthetic protein flhB.; length=360; id 65.730; 356 aa overlap; query 9-364; subject 4-359	flagellar biosynthesis transmembrane protein similar to flhB (SMc03018) [Sinorhizobium meliloti] and AGR_C_991p [Agrobacterium tumefaciens] Similar to entrez-protein:O54243 Putative location:bacterial inner membrane Psort-Score: 0.5967; go_component: membrane [goid 0016020]; go_component: integral to membrane [goid 0016021]; go_component: inner membrane [goid 0019866]; go_function: ATP binding [goid 0005524]; go_process: protein secretion [goid 0009306]; go_process: protein targeting [goid 0006605]	flagellar biosynthetic protein	Endoflagellar biosynthesis protein inner membrane protein	Endoflagellar biosynthesis protein inner membrane protein	Flagellar biosynthesis pathway	Type III secretion exporter	flagellar biosynthetic protein FlhB TIGRFAM: flagellar biosynthetic protein FlhB PFAM: type III secretion exporter KEGG: hch:HCH_05175 flagellar biosynthesis pathway, component FlhB	flagella-associated protein (Q9ZL73) Flagellar biosynthetic protein flhB High confidence in function and specificity	type III secretion exporter PFAM: type III secretion exporter KEGG: gsu:GSU0426 flagellar biosynthetic protein FlhB	type III protein export, membrane component COG_category N;COG_number COG1377; FlhB	flagellar biosynthetic protein FlhB identified by match to protein family HMM PF01312; match to protein family HMM TIGR00328	type III secretion exporter	Flagellar biosynthetic protein FlhB	putative part of export apparatus for flagellar proteins Code: NU; COG: COG1377	
HELPY00750	Putative uncharacterized protein	Putative	hypothetical protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00751	N-acetylmuramoyl-L-alanine amidase	Cell wall hydrolase/autolysin	N-acetylmuramoyl-L-alanine amidase	Putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE	N-acetylmuramoyl-L-alanine amidase precursor	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase PFAM: cell wall hydrolase/autolysin KEGG: bcn:Bcen_1952 N-acetylmuramoyl-L-alanine amidase	(Q9RMZ0) Hypothetical cell-wall amidase pXO2-42 precursor (EC 3.5.1.28) High confidence in function and specificity	N-acetylmuramoyl-l-alanine amidase I	N-acetylmuramoyl-L-alanine amidase precursor	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	putative N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	AmiA protein	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase; putative signal peptide	N-acetylmuramoyl-l-alanine amidase I	N-acetylmuramoyl-L-alanine amidase	
HELPY00752	Putative uncharacterized protein	Dioxygenase related to 2-nitropropane dioxygenase	Probable dioxygenase related to 2-nitropropane dioxygenase oxidoreductase protein	Probable Dioxygenase related to 2-nitropropane dioxygenase	identified by match to protein family HMM PF03060 oxidoreductase, 2-nitropropane dioxygenase family	Dioxygenases related to 2-nitropropane dioxygenase	Putative uncharacterized protein	Putative	Hypothetical protein	Ortholog to ERGA_CDS_07710 Hypothetical protein	conserved family - putative dioxygenase hypothetical protein	related to 2-nitropropane dioxygenase; COG2070 dioxygenase	probable dioxygenase related to 2-nitropropane dioxygenase	Putative 2-nitropropane dioxygenase	Ortholog to ERWE_CDS_07800 Hypothetical protein	2-nitropropane dioxygenase, NPD	2-nitropropane dioxygenase, NPD	Best Blastp Hit: pir||F81861 hypothetical protein NMA1666 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380308|emb|CAB84894.1| (AL162756) hypothetical protein [Neisseria meningitidis] COG2070 Dioxygenases related to 2-nitropropane conserved hypothetical protein	conserved hypothetical protein	2-nitropropane dioxygenase-like dioxygenase	2-nitropropane dioxygenase, NPD	2-nitropropane dioxygenase, NPD	2-nitropropane dioxygenase, NPD	2-nitropropane dioxygenase, NPD	conserved hypothetical protein	2-nitropropane dioxygenase, NPD	2-nitropropane dioxygenase, NPD	2-nitropropane dioxygenase, NPD	conserved hypothetical protein	
HELPY00753	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase 2	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase 2	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase 2	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase 2	tyrosyl-tRNA synthetase	conserved gene tyrosyl tRNA synthetase	tyrosyl-tRNA synthetase	tyrosyl tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	identified by similarity to SP:P25151; match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234 tyrosyl-tRNA synthetase	InterProMatches:IPR002307; Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437) tyrosyl-tRNA synthetase	tyrosyl-tRNA synthetase 2	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	t-RNA synthetase, class Ib:Tyrosyl-tRNA synthetase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	tyrosine--tRNA ligase; TyrRS; Similar to: HI1610, SYY_HAEIN tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase TyrS protein	
HELPY00754	Penta-phosphate guanosine-3'-pyrophosphohydrolase	(P)ppGpp synthetase	Putative stringent response protein, ppGpp synthetase	GTP pyrophosphokinase	GTP pyrophosphokinase	Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase GTP pyrophosphokinase	identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative	(p)ppGpp synthetase	identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 RelA/SpoT family protein	Putative uncharacterized protein spoT	Putative uncharacterized protein relA	GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE	identified by match to PFAM protein family HMM PF01842 GTP pyrophosphokinase family protein	(P)ppGpp synthetase	best blastp match gb|AAK34667.1| (AE006621) (p)ppGpp synthetase [Streptococcus pyogenes M1 GAS] (p)ppGpp synthetase	synthetase; COG0317 guanosine polyphosphate pyrophosphohydrolase	(p)ppGpp synthetase	GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)	identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase	RelA/SpoT protein	identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 GTP pyrophosphokinase	guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase GTP pyrophosphokinase	(P)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	(p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA	Metal dependent phosphohydrolase	GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase bifunctional	Metal dependent phosphohydrolase	GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase bifunctional	(p)ppGpp synthetase I, SpoT/RelA KEGG: dra:DR1838 GTP pyrophosphokinase, ev=0.0, 77% identity TIGRFAM: RelA/SpoT family protein: (2.9e-250) PFAM: amino acid-binding ACT: (2.1e-07) TGS: (6e-30) metal-dependent phosphohydrolase, HD subdomain: (1.3e-16) RelA/SpoT: (5.5e-48) SMART: Metal-dependent phosphohydrolase, HD region: (7.7e-15)	
HELPY00755	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase omega chain	RNA polymerase omega chain, a transcriptional activator	DNA-directed RNA polymerase, omega subunit identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690	DNA-directed RNA polymerase subunit omega (P60326) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) High confidence in function and specificity	DNA-directed RNA polymerase, omega subunit identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690	DNA-directed RNA polymerase, omega subunit	DNA-directed RNA polymerase, omega subunit	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase, omega chain	DNA-directed RNA polymerase, omega subunit	DNA-directed RNA polymerase, omega subunit	DNA-directed RNA polymerase, omega subunit	DNA-directed RNA polymerase subunit omega	RNA polymerase omega chain, transcriptional activator	DNA-directed RNA polymerase, omega chain	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase omega chain	
HELPY00756	Uridylate kinase	uridine monophosphate kinase	uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	CDS_ID OB1588 uridylate kinase	Uridylate kinase	similar to AX064703-1|CAC25591.1| percent identity: 94 in 243 aa putative uridylate kinase	Uridylate kinase	uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	UMP kinase	SC2E1.43, pyrH, uridylate kinase, len: 253 aa; highly similar to many e.g. PYRH_ECOLI uridylate kinase (EC 2.7.4.-) (240 aa), fasta scores; opt: 668 z-score: 968.6 E(): 0, 45.9% identity in 233 aa overlap uridylate kinase	
HELPY00757	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF02621	conserved hypothetical protein Function unclear	conserved hypothetical protein identified by match to protein family HMM PF02621	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00758	Aconitate hydratase 2	Aconitate hydrase B	Aconitase hydrase B	Residues 52 to 916 of 916 are 99 pct identical to residues 1 to 865 of a 865 aa protein from Escherichia coli K12 ref: NP_414660.1 aconitate hydrase B	Aconitate hydratase 2	Probable aconitate hydratase 2 transmembrane protein	Aconitate hydratase 2	aconitate hydratase 2	Aconitate hydratase	Aconitate hydratase 2	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark aconitate hydratase 2	IPR001030: Aconitate hydratase, N-terminal; IPR004406: Aconitate hydratase 2 aconitate hydratase 2	similar to Salmonella typhi CT18 aconitate hydratase 2 (citrate hydro-lyase 2) aconitate hydratase 2 (citrate hydro-lyase 2)	Aconitate hydratase 2	Aconitate hydratase 2	Aconitate hydratase 2	Aconitate hydratase	Aconitate hydratase B	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme aconitate hydratase 2	Aconitate hydratase	aconitate hydratase 2	Aconitase B AcnB protein	Aconitate hydratase 2	Aconitase B	Aconitate hydratase 2	Aconitase	aconitate hydratase 2	identified by match to protein family HMM PF00330; match to protein family HMM PF06434; match to protein family HMM TIGR00117 aconitate hydratase 2	identified by match to protein family HMM PF00330; match to protein family HMM PF06434; match to protein family HMM TIGR00117 aconitate hydratase 2	
HELPY00759	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY00760	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein putative periplasmic protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00761	Putative uncharacterized protein	Putative Outer membrane protein	outer membrane protein HofE	hof-family outer membrane protein hypothetical protein	Putative uncharacterized protein	Outer membrane protein	Outermembrane protein HofE	
HELPY00762	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY00764	Outer-membrane lipoprotein carrier protein	Outer-membrane lipoprotein carrier protein	Outer-membrane lipoprotein carrier protein precursor	Outer membrane lipoprotein carrier protein LolA	outer membrane lipoprotein carrier protein LolA TIGRFAMsMatches:TIGR00547	outer membrane lipoprotein carrier protein	outer-membrane lipoprotein carrier protein identified by match to protein family HMM PF03548	putative outer membrane lipoprotein carrier protein Probable outer-membrane lipoproteins carrier protein precursor High confidence in function and specificity	conserved hypothetical protein identified by match to protein family HMM PF03548	Putative uncharacterized protein	Putative uncharacterized protein	Outer-membrane lipoprotein carrier protein	Outer membrane lipoprotein carrier protein LolA	Outer-membrane lipoprotein carrier protein	Outer-membrane lipoprotein carrier protein	Outer-membrane lipoprotein carrier protein	Outer-membrane lipoprotein carrier protein	Outer membrane lipoprotein carrier protein	Outer membrane lipoprotein carrier protein, LolA family	Outer-membrane lipoprotein carrier protein	Outer-membrane lipoprotein carrier protein; putative signal peptide	
HELPY00765	Protein translocase subunit secA	preprotein translocase subunit	preprotein translocase subunit (ATPase, RNA helicase)	Protein translocase subunit secA	Protein translocase subunit secA	Preprotein translocase, SecA subunit	preprotein-translocase subunit a	Protein translocase subunit secA	Preprotein translocase secA subunit	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA 1	Protein translocase subunit secA	CDS_ID OB2496 preprotein translocase subunit	Protein translocase subunit secA	similar to D17428-1|BAA92789.1| percent identity: 88 in 842 aa putative preprotein translocase SecA	Protein translocase subunit secA	preprotein translocase secA	Protein translocase subunit secA	Protein translocase subunit secA 1	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA	
HELPY00766	Conserved hypothetical integral membrane protein	LIPOPROTEIN RELEASING SYSTEM TRANSMEMBRANE PROTEIN LOLE	Putative uncharacterized protein VP0977	Lipoprotein-releasing system transmembrane protein lolC	hypothetical protein	Lipoprotein releasing system, permease protein, putative	Lipoprotein releasing system transmembrane protein	Possible ABC type permease; lipoprotein releasing factor	Lipoprotein-releasing system transmembrane protein lolC	Putative uncharacterized protein	Putative uncharacterized protein RP699	Lipoprotein releasing system transmembrane protein lolC	Residues 1 to 416 of 416 are 99 pct identical to residues 1 to 416 of a 416 aa protein from Escherichia coli dbj: BAA35936.1 orf, conserved hypothetical protein	DUF214	Probable lipoprotein releasing system transmembrane	Similar to ABC transporter, permease component hypothetical protein	conserved gene lipoprotein ABC transporter	Similar to ABC transporter, permease component hypothetical protein	identified by similarity to SP:P75956; match to protein family HMM PF02687 lipoprotein releasing system transmembrane protein LolE	Lipoprotein releasing system trasmembrane protein	Lipoprotein-releasing system transmembrane protein lolC	identified by match to protein family HMM PF02687 permease, putative	Lipoprotein ABC transporter	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipoprotein releasing system transmembrane protein	ABC transporter, integral membrane protein	ABC-type transport system, involved in lipoprotein release, permease component	similar to Salmonella typhi CT18 ABC transporter integral membrane subunit ABC transporter integral membrane subunit	Putative uncharacterized protein	similar to BR0823, ABC transporter, permease protein ABC transporter, permease protein	
HELPY00767	Putative uncharacterized protein	Putative Outer membrane protein	outer membrane protein HofF	hof-family outer membrane protein hypothetical protein	Outer membrane protein HofF	Outer membrane protein	Outer membrane protein HofF	
HELPY00769	Anti-codon nuclease masking agent	Restriction endonuclease S subunit	TYPE I RESTRICTION ENZYME	HP0790-like protein	Restriction modification system DNA specificity domain	type I restriction-modification system specificity subunit	restriction modification system DNA specificity domain PFAM: restriction modification system DNA specificity domain KEGG: spt:SPA4345 subunit S of type I restriction-modification system	restriction modification system DNA specificity domain PFAM: restriction modification system DNA specificity domain KEGG: mma:MM2739 type I restriction-modification system specificity subunit	Type I restriction-modification system, S subunit	Type I restriction enzyme S subunit	Putative type I restriction-modification system, S subunit	Type I restriction enzyme	Restriction modification system DNA specificity domain	Anti-codon nuclease masking agent	type I restriction-modification system S protein	pseudo	Restriction modification system DNA specificity domain protein	Putative type I restriction-modification system, S subunit	
HELPY00770	Cadmium, zinc and cobalt-transporting ATPase	Cadmium-translocating P-type ATPase	Cation transport P-type ATPase	Cation transport ATPases	Cellular Component: membrane (GO:0016020), Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (GO:0016818), Biological Process: metal ion transport (GO:00300 Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase,Heavy metal translocating P-type ATPase	Cadmium, zinc and cobalt transporting ATPase	Similar to Oscillatoria brevis P type ATPase Bxa1 SWALL:Q8L158 (EMBL:AB073990) (660 aa) fasta scores: E(): 2.4e-100, 48.81% id in 633 aa, and to Bacteroides thetaiotaomicron cation-transporting ATPase, P-type, putative zinc-transporting ATPase BT2512 SWALL:AAO77619 (EMBL:AE016936) (652 aa) fasta scores: E(): 3.7e-174, 72.3% id in 650 aa, and to Thermoanaerobacter tengcongensis cation transport ATPases Znta2 or TTE2467 SWALL:Q8R7E7 (EMBL:AE013188) (658 aa) fasta scores: E(): 7.9e-101, 46.56% id in 640 aa putative transmembrane cation transport P type ATPase	cation-transporting ATPase, P-type	ATPase, E1-E2 type:Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase	Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase	Putative heavy metal-transporting P-type ATPase	Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	Zinc-transporting ATPase COG0474 [P] Cation transport ATPase	Heavy metal translocating P-type ATPase	cadmium-transporting ATPase	zinc-transporting atpase identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525	cation-transporting ATPase, P-type	cadmium-translocating P-type ATPase identified by similarity to SP:Q59465; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525	Heavy metal translocating P-type ATPase	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-ty pe ATPase	cadmium-translocating P-type ATPase identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525	heavy metal-transporting ATPase Cadmium zinc and cobalt transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5) High confidence in function and specificity	cadmium-translocating P-type ATPase identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525	Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	putative heavy-metal-transporting ATPase	Hypothetical protein	Heavy metal translocating P-type ATPase	heavy metal translocating P-type ATPase TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein KEGG: rme:Rmet_5947 heavy metal translocating P-type ATPase	Cation-transporting ATPase, P-type, putative zinc -transporting ATPase	
HELPY00771	Sigma-54 interacting protein	competence protein ComM homolog	hypothetical conserved protein	Putative magnesium chelatase	Mg chelatase, subunit D/I family protein	Competence related protein	ComM-related protein	Putative uncharacterized protein	Putative 2-component regulator	similar to AX065693-1|CAC26086.1| percent identity: 69 in 507 aa putative magnesium chelatase	Putative uncharacterized protein	Magnesium chelatase family protein	Putative Mg(2+) chelatase family protein	ATPase, possible competence protein ComM	Competence protein M	SC2E1.20, unknown ATP/GTP binding protein, len: 541 aa; similar to hypothetical proteins from many organisms e.g. YIFB_ECOLI (516 aa), fasta scores; opt: 356 z-score: 935.9 E(): 0, 37.0% identity in 513 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop) conserved hypothetical protein SC2E1.20	Predicted ATPase with chaperone activity	Competence protein ComM	ComM-related protein	Competence protein comM	Mg chelatase subunit chII	similar to Escherichia coli K12 putative 2-component regulator gi: 1790201 (517 aa). BLAST with identity of 97% in 503 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct. pseudo	Putative magnesium chelatase family protein	Probable Mg(2+) chelatase family protein	Putative uncharacterized protein	Similar to unknown protein YifB of Escherichia coli	Similar to competence protein comM hypothetical protein	conserved gene competence related protein ComM	Similar to competence protein comM hypothetical protein	
HELPY00772	Peptide deformylase	Peptide deformylase	Peptide deformylase	Peptide deformylase	N-formylmethionylaminoacyl-tRNA deformylase (EC 3.5.1.27)	Peptide deformylase	Peptide deformylase 1	Peptide deformylase	Peptide deformylase	Peptide deformylase	Peptide deformylase	Polypeptide deformylase	Residues 1 to 169 of 169 are 99 pct identical to residues 1 to 169 of a 169 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289848.1 peptide deformylase	Peptide deformylase	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 peptide deformylase	Peptide deformylase	polypeptide deformylase	identified by similarity to SP:P94462; match to protein family HMM PF01327; match to protein family HMM TIGR00079 peptide deformylase	InterProMatches:IPR000181; Biological Process: protein biosynthesis (GO:0006412), Molecular Function: formylmethionine deformylase activity (GO:0008463) polypeptide deformylase	Peptide deformylase	Peptide deformylase	Peptide deformylase	Peptide deformylase	Similar to sp|Q92IZ1|DEF1_RICCN sp|Q9ZDV8|DEF_RICPR; Ortholog to ERGA_CDS_00440 Peptide deformylase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II))	Peptide deformylase	Peptide deformylase, N-formylmethionylaminoacyl-tRNA deformylase	Similar to Leptospira interrogans peptide deformylase Def or Pdf or la2438 SWALL:DEF_LEPIN (SWALL:Q93LE9) (178 aa) fasta scores: E(): 6.7e-16, 38.6% id in 158 aa, and to Bacteroides thetaiotaomicron peptide deformylase BT0420 SWALL:Q8AAP4 (EMBL:AE016927) (184 aa) fasta scores: E(): 3.3e-59, 88.58% id in 184 aa, and to Porphyromonas gingivalis W83 polypeptide deformylase Def or PG2201 SWALL:AAQ67143 (EMBL:AE017179) (189 aa) fasta scores: E(): 2.9e-43, 65.19% id in 181 aa putative peptide deformylase	Similar to DEF_NEIMA (Q9JQN0) Peptide deformylase from Neisseria meningitidis (167 aa). FASTA: opt: 465 z-score: 571.7 E(): 5.4e-24 Smith-Waterman score: 465; 46.914 identity in 162 aa overlap peptide deformylase	
HELPY00773	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein)	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	CDS_ID OB2456 ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit 2	ATP-dependent Clp proteinase	ATP-dependent Clp protease proteolytic subunit 1	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit 1	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit 1	Residues 40 to 246 of 246 are 100 pct identical to residues 1 to 207 of a 207 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286179.1 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	
HELPY00774	Trigger factor	trigger factor	trigger factor (prolyl isomerase)	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	CDS_ID OB2078; prolyl isomerase trigger factor	Trigger factor	similar to AL583922-46|CAC30431.1| percent identity: 45 in 455 aa putative trigger factor	Trigger factor	trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Trigger factor	
HELPY00775	Outer membrane protein	outer membrane protein HorG	outer membrane protein 10 hypothetical protein	Outer membrane protein	Outer membrane protein	Outer membrane protein HorG	
HELPY00776	Neuraminyllactose-binding hemagglutinin	flagellar sheath adhesin	Neuraminyllactose-binding hemagglutinin precursor High confidence in function and specificity	Flagellar sheath adhesin	Flagellar sheath adhesin	Flagellar sheath adhesin HpaA	
HELPY00777	Molybdenum cofactor biosynthesis protein C	molybdopterin precursor biosynthesis (molybdenum cofactor biosynthesis protein C)	Molybdenum cofactor biosynthesis protein	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein	Molybdenum cofactor biosynthesis protein C	similar to AX064461-1|CAC25471.1| percent identity: 89 in 155 aa putative molybdopterin bioynthesis protein C	molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	SCE87.31c, moaC, probable molybdenum cofactor biosynthesis protein, len: 170 aa. Highly similar to many including: Mycobacterium tuberculosis TR:O53876 (EMBL:AL022004) MoaC protein (167 aa), fasta scores opt: 627 z-score: 742.2 E():0 61.0% identity in 164 aa overlap and Escherichia coli SW:MOAC_ECOLI(EMBL:X70420) molybdenum cofactor biosynthesis protein C (160 aa), fasta scores opt: 459 z-score: 547.5 E(): 4e-23 54.2% identity in 153 aa overlap. Contains a possible membrane spanning hydrophobic domain. molybdenum cofactor biosynthesis protein	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	Residues 1 to 161 of 161 are 100 pct identical to residues 1 to 161 of a 161 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286546.1 molybdopterin biosynthesis, protein C	Molybdenum cofactor biosynthesis protein C	molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	identified by similarity to EGAD:21351; match to protein family HMM PF01967; match to protein family HMM TIGR00581 molybdenum cofactor biosynthesis protein C	identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581 molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	Molybdenum cofactor biosynthesis protein C	identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581 molybdenum cofactor biosynthesis protein MoaC	MoaC2	Molybdenum cofactor biosynthesis protein C	
HELPY00778	Molybdopterin adenylyltransferase	Molybdopterin biosynthesis mog protein	Molybdenum cofactor biosynthesis protein	MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN	Molybdopterin adenylyltransferase	similar to AX064467-1|CAC25474.1| percent identity: 66 in 156 aa putative molybdopterin biosynthesis protein B	SCE87.30c, moaB, probable molybdenum cofactor biosynthesis protein (putative secreted protein), len: 179 aa. Highly similar to many including: Mycobacterium tuberculosis TR:O53877 (EMBL:AL022004) putative molybdopterin biosynthesis Mog protein (160 aa), fasta scores opt: 617 z-score: 660.3 E(): 2.1e-29 60.0% identity in 160 aa overlap and the C-terminus of the Synechococcus sp MoaC, MoaB fusion protein SW:MOCB_SYNP7 (EMBL:X99625) molybdenum cofactor biosynthesis protein CB (319 aa), fasta scores opt: 401 z-score: 430.6 E(): 1.3e-16 41.5% identity in 171 aa overlap. Contains a Prosite hit to PS01078 Molybdenum cofactor biosynthesis proteins signature 1 and a possible N-terminal signal sequence. molybdenum cofactor biosynthesis protein (putative secreted protein)	Residues 2 to 196 of 196 are 100 pct identical to residues 1 to 195 of a 195 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285701.1 Mog, required for the efficient incorporation of molybdate into molybdoproteins	Molybdopterin biosynthesis protein	Probable molybdochetalase in molybdopterin biosynthesis protein	Molybdopterin biosynthesis protein mog	Molybdopterin biosynthesis Mog protein	identified by similarity to GP:6980503; match to protein family HMM PF00994; match to protein family HMM TIGR00177 molybdenum cofactor biosynthesis protein	Mog	Molybdopterin biosynthesis Mog protein	Mb0889, mog, len: 160 aa. Equivalent to Rv0865, len: 160 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 160 aa overlap). Probable mog, molybdopterin biosynthesis MOG protein, highly similar or similar to other molybdenum cofactor biosynthesis proteins e.g. CAB59675.1|AL132674 molybdenum cofactor biosynthesis protein from Streptomyces coelicolor (179 aa); NP_301253.1|NC_002677 putative molybdenum cofactor biosynthesis protein from Mycobacterium leprae (181 aa); CAC39235.1|AJ312124 Mog protein from Eubacterium acidaminophilum (162 aa); P44645|MOG_HAEIN|MOGA|HI0336 MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN from Haemophilus influenzae (197 aa), FASTA scores: opt: 306, E(): 9e-13, (39.6% identity in 139 aa overlap); P28694|MOG_ECOLI MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN from Escherichia coli (195 aa), FASTA scores: opt: 265, E(): 3.6e-10, (34.2 identity in 146 aa overlap); etc. Also highly similar to Rv0984|MTV044.12|MOAB2 POSSIBLE PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE from Mycobacterium tuberculosis (181 aa). PUTATIVE MOLYBDOPTERIN BIOSYNTHESIS MOG PROTEIN	IPR001453: Molybdenum cofactor biosynthesis protein; IPR008284: Molybdenum cofactor biosynthesis protein, N-terminal putative molybdochetalase in molybdopterine biosynthesis	similar to Salmonella typhi CT18 molybdopterin biosynthesis Mog protein molybdopterin biosynthesis Mog protein	Molybdopterin biosynthesis enzyme MoaB	similar to BRA0496, molybdenum cofactor biosynthesis protein MogA MogA, molybdenum cofactor biosynthesis protein	molybdopterin precursor biosynthesis moaB	Molybdopterin biosynthesis mog protein	Putative molybdochetalase in molybdopterine biosynthesis	Ortholog of S. aureus MRSA252 (BX571856) SAR2359 putative molybdenum cofactor biosynthesis protein B	molybdopterin biosynthesis Mog protein	Similar to: HI0336, MOG_HAEIN molybdopterin biosynthesis mog protein	Molybdopterin biosynthesis enzymes MoaB protein	Putative molybdochetalase	Molybdopterin biosynthesis Mog protein	
HELPY00779	Molybdopterin-converting factor subunit 2	Molybdopterin converting factor	Molybdopterin converting factor subunit 2	Possible molybdopterin converting factor, subunit 2	molybdopterin converting factor, subunit 2	molybdopterin converting factor, subunit 2	molybdopterin converting factor, subunit 2 identified by match to protein family HMM PF02391	Molybdenum cofactor biosynthesis protein E	Molybdenum cofactor biosynthesis protein E	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor, subunit 2	Molybdopterin converting factor subunit 2	Molybdopterin-converting factor subunit 2	
HELPY00780	Molybdopterin converting factor, subunit 1	Molybdopterin converting factor	Putative MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 1	Thiamine S	molybdopterin converting factor, subunit 1	conserved domain protein identified by match to protein family HMM PF02597	thiS family protein identified by match to protein family HMM PF02597	Molybdenum cofactor biosynthesis protein D	Molybdenum cofactor biosynthesis protein D	ThiS family protein	ThiS family protein	Molybdopterin converting factor, subunit 1	Conserved domain protein	Conserved domain protein	Conserved domain protein	Molybdopterin converting factor, subunit 1	Molybdopterin converting factor, subunit 1	Conserved domain protein	Molybdopterin converting factor, subunit 1	Molybdopterin-converting factor subunit 1	
HELPY00781	GTP cyclohydrolase-2	GTP cyclohydrolase-2	GTP cyclohydrolase-2	GTP cyclohydrolase-2	Residues 22 to 217 of 217 are 100 pct identical to residues 1 to 196 of a 196 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287920.1 GTP cyclohydrolase II	GTP cyclohydrolase-2	GTP cyclohydrolase-2	GTP cyclohydrolase-2	identified by similarity to SP:O08315; match to protein family HMM PF00925; match to protein family HMM TIGR00505 GTP cyclohydrolase II	GTP cyclohydrolase-2	IPR000408: Regulator of chromosome condensation, RCC1 GTP cyclohydrolase II	similar to Salmonella typhi CT18 GTP cyclohydrolase II GTP cyclohydrolase II	GTP cyclohydrolase-2	GTP cyclohydrolase II	GTP cyclohydrolase-2	Putative GTP cyclohydrolase II	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme GTP cyclohydrolase II	Similar to: HI0212, GCH2_HAEIN GTP cyclohydrolase II	GTP cyclohydrolase II RibA protein	GTP cyclohydrolase-2	GTP cyclohydrolase-2	Similar to Streptomyces coelicolor GTP cyclohydrolase II RibA or SCO6655 or SC5A7.05 SWALL:GCH2_STRCO (SWALL:O88011) (221 aa) fasta scores: E(): 5.3e-34, 52.12% id in 188 aa, and to Arabidopsis thaliana GTP cyclohydrolase II SWALL:GCH2_ARATH (SWALL:P47924) (245 aa) fasta scores: E(): 1.3e-31, 47.54% id in 183 aa GTP cyclohydrolase II	GTP cyclohydrolase-2	GTP cyclohydrolase II	identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505 GTP cyclohydrolase II	ortholog to Escherichia coli bnum: b1277; MultiFun: Metabolism 1.5.3.9 GTP cyclohydrolase II	identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505 GTP cyclohydrolase II	GTP cyclohydrolase II	GTP cyclohydrolase II	
HELPY00782	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Ubiquitin-protein ligase	
HELPY00783	3,4-dihydroxy-2-butanone 4-phosphate synthase	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	Probable 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	GTP cyclohydrolase II	GTP cyclohydrolase II	GTP cyclohydrolase 2	Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase riboflavin biosynthesis protein RibA	identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 3,4-dihydroxy-2-butanone 4-phosphate synthase	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4- phosphate synthase	3,4-dihydroxy-2-butanone 4-phosphate synthase	3,4-dihydroxy-2-butanone 4-phosphate synthase	Putative bifunctional 3,4-dihydroxy-2-butanone 4- phosphate synthase/GTP cyclohydrolase II	COG0108 GTP cyclohydrolase II	3,4-dihydroxy-2-butanone-4-phosphate synthase GTP cyclohydrolase II	Similar to GCH2_AQUAE Riboflavin biosynthesis protein ribA from Aquiflex aeolicus (406 aa). FASTA: opt: 1135 z-score: 1316.5 E(): 1.8e-65 Smith-Waterman score: 1135; 46.305 identity in 406 aa overlap riboflavin biosynthesis protein ribA/GTP-cyclohydrolase II	GTP cyclohydrolase II 3,4-dihydroxy-2-butanone 4-phosphate synthase	identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506 3,4-dihydroxy-2-butanone-4-phosphate synthase	3,4-dihydroxy-2-butanone 4-phosphate synthase and GTP cyclohydrolase II	Riboflavin biosynthesis protein RibD	3,4-Dihydroxy-2-butanone 4-phosphate synthase:GTP cyclohydrolase II	3,4-Dihydroxy-2-butanone 4-phosphate synthase	bifunctional; Best Blastp Hit: pir||C81912 probable bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II NMA1429 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380085|emb|CAB84667.1| (AL162755) putative bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II [Neisseria meningitidis] COG0108 3,4-dihydroxy-2-butanone 4-phosphate; putative GTP cyclohydrolase II putative 3,4-dihydroxy-2-butanone 4-phosphate synthase	3,4-Dihydroxy-2-butanone 4-phosphate synthase	3,4-dihydroxy-2-butanone 4-phosphatesynthase	identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8144477; Product type e : enzyme 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)	riboflavin biosynthesis protein RibA identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506	3,4-Dihydroxy-2-butanone 4-phosphate synthase:GTP cyclohydrolase II	3,4-Dihydroxy-2-butanone 4-phosphate synthase	
HELPY00784	Lipooligosaccharide 5G8 epitope biosynthesis- associated protein	UDP-glucose--lipooligosaccharide glucosyltransferase	lipooligosaccharide 5G8 epitope biosynthesis-associated protein	putative lipopolysaccharide biosynthesis protein Function unclear	UDP-glucose--lipooligosaccharide glucosyltransferase	50S ribosomal protein L31	Putative lipopolysaccharide biosynthesis protein	Lipooligosaccharide 5G8 epitope biosynthesis- associated protein	Lipopolysaccharide biosynthesis protein	
HELPY00785	Putative uncharacterized protein	Zinc metallopeptidases	Putative metal-dependent hydrolase	identified by similarity to GB:BAC46174.1; match to protein family HMM PF01863 conserved hypothetical protein	identified by similarity to GP:28203619; match to protein family HMM PF01863 conserved hypothetical protein	Zinc metallopeptidase protein	Putative uncharacterized protein	similar to BR2113, conserved hypothetical protein conserved hypothetical protein	Putative	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	Hypothetical protein	Predicted metal-dependent hydrolase	Protein of unknown function DUF45	putative zinc protease	Protein of unknown function DUF45	identified by similarity to GB:AAN53462.1; match to protein family HMM PF01863 conserved hypothetical protein	zinc metallopeptidases-like protein	protein of unknown function DUF45	conserved hypothetical protein	protein of unknown function DUF45	Putative uncharacterized protein	zinc protease, putative	Putative metal-dependent hydrolase	conserved hypothetical protein similarity:fasta; with=UniProt:Q8UJB2 (EMBL:HS360250); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu0016 (AGR_C_25p).; length=AGR_C ( 255; id 68.482; 257 aa overlap; query 1-252; subject 1-255	zinc protease, putative	protein of unknown function DUF45 PFAM: protein of unknown function DUF45: (4.9e-65) KEGG: sil:SPO3622 hypothetical protein, ev=7e-69, 59% identity	protein of unknown function DUF45	putative zinc metallopeptidase protein similar to BMEI2015 [Brucella melitensis], AGR_C_25p [Agrobacterium tumefaciens] and SMc02768[Sinorhizobium meliloti] Similar to swissprot:Q8YE63 Putative location:bacterial cytoplasm Psort-Score: 0.3551	Protein of unknown function DUF45	
HELPY00786	Iron(III) dicitrate transport protein	Putative iron compound receptor	Ferrichrome-iron transporter	IRON(III) DICITRATE TRANSPORT PROTEIN	TonB-dependent siderophore receptor	TonB-dependent siderophore receptor	Putative iron compound receptor	TonB-dependent receptor precursor	iron(III) dicitrate transport protein	TonB-dependent siderophore receptor	Putative iron compound receptor	TonB-dependent siderophore receptor TIGRFAM: TonB-dependent siderophore receptor PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug KEGG: bcn:Bcen_0879 TonB-dependent siderophore receptor	iron(III) dicitrate transport protein (P13036) Iron(III) dicitrate transport protein fecA precursor High confidence in function and specificity	tonB dependent receptor identified by match to protein family HMM PF00593; match to protein family HMM PF07715	Putative iron transporter precursor	TonB-dependent receptor PFAM: TonB-dependent receptor; TonB-dependent receptor, plug KEGG: dar:Daro_4029 TonB-dependent receptor	outer membrane receptor for Fe(III)-dicitrate	TonB-dependent receptor precursor	putative iron compound receptor	FecA iron(III) dicitrate transport protein	TonB-dependent receptor precursor	Putative iron transporter precursor	TonB-dependent siderophore receptor precursor	TonB-dependent outer membrane ferric coprogen receptor FitA	TonB-dependent receptor	Iron complex outer membrane receptor protein	putative TonB-dependent siderophore receptor	TonB-dependent siderophore receptor	TonB-dependent receptor	
HELPY00787	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Probable holo-[acyl-carrier-protein] synthase 2	CDS_ID OB0619; acyl carrier protein holo-(acyl carrier protein) synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	identified by similarity to SP:P24224; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 holo-(acyl-carrier-protein) synthase	Holo-(Acyl-carrier-protein) synthase protein	Similar to many including: Escherichia coli holo-[acyl-carrier protein] synthase AcpS or SWALL:ACPS_ECOLI (SWALL:P24224) (125 aa) fasta scores: E(): 6e-06, 32.23% id in 121 aa and Clostridium perfringens holo-[acyl-carrier protein] synthase AcpS or cpe0291 SWALL:ACPS_CLOPE (SWALL:Q8XNP1) (133 aa) fasta scores: E(): 1.6e-08, 43.2% id in 125 aa holo-[acyl-carrier protein] synthase	Putative holo-[acyl-carrier protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	identified by match to PFAM protein family HMM PF01648 holo-(acyl-carrier-protein) synthase	Similar to sp|Q92H90|ACPS_RICCN sp|Q9ZCX5|ACPS_RICPR; Ortholog to ERGA_CDS_03460 Holo-[acyl-carrier protein] synthase	holo-[acyl-carrier protein] synthase	Holo-[acyl-carrier protein] synthase	holo-[acyl-carrier protein] synthase	Similar to sp|Q92H90|ACPS_RICCN sp|Q9ZCX5|ACPS_RICPR; Ortholog to ERWE_CDS_03500 Holo-[acyl-carrier protein] synthase	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 holo-(acyl-carrier-protein) synthase	identified by similarity to SP:P96618; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 holo-(acyl-carrier-protein) synthase	holo-(acyl-carrier-protein) synthase	Holo-acyl carrier protein synthase:Phosphopantethiene-protein transferase domain	Phosphopantethiene-protein transferase	Holo-[acyl-carrier-protein] synthase	Holo-acyl carrier protein synthase/Phosphopantethiene-protein transferase	Holo-[acyl carrier protein] synthase	holo-acyl-carrier protein synthase EC 2.7.8.7	
HELPY00788	Putative uncharacterized protein	Polar flagellar protein	identified by similarity to SP:P23452; match to protein family HMM PF03748 flagellar protein FliL	Antigen P21Hh7	Putative FLAGELLAR BIOSYNTHESIS PROTEIN	Flagellar basal body-associated protein FliL	Flagellar basal body-associated protein	Flagellar basal body-associated protein FliL	probable flagellar transmembrane protein FliL	Flagellar basal body-associated protein FliL	Flagellar basal body-associated protein COG1580	putative flagellar biosynthesis protein	Flagellar basal body-associated protein	flagellar basal body-associated protein FliL identified by match to protein family HMM PF03748	flagellar protein FliL Flagellar fliL protein High confidence in function and specificity	flagellar basal body-associated protein FliL PFAM: flagellar basal body-associated protein FliL KEGG: gsu:GSU0420 flagellar protein FliL	flagellar protein FliL identified by match to protein family HMM PF03748	Flagellar basal body-associated protein FliL precursor	Flil blagellar basal body-associated protein	Flagellar protein FliL	Possible flagellar protein	Putative flagellar basal body-associated protein	Flagellar basal body-associated protein FliL	Flagellar basal body-associated protein FliL	FliL	Flagellar basal body-associated protein FliL	Flagellar basal body-associated protein FliL	Flagellar basal body-associated protein FliL precursor	Flagellar basal body-associated protein FliL	
HELPY00789	Putative uncharacterized protein	hypothetical conserved protein	Putative type II DNA modification methyltransferase	Putative methylase	N6-adenine-specific methylase	Putative uncharacterized protein	Putative uncharacterized protein yhhF	CDS_ID OB1450 hypothetical protein	DNA METHYLASE	Putative uncharacterized protein	Methyltransferase, putative	Putative uncharacterized protein	N6-adenine-specific methylase	DNA methyltransferase	BH2590 protein	Ribosomal RNA small subunit methyltransferase D	N6-adenine-specific methylase	N6-adenine-specific methylase	Putative methyltransferase	Lin2159 protein	Residues 1 to 198 of 198 are 98 pct identical to residues 1 to 198 of a 198 aa protein from Escherichia coli K12 ref: NP_417922.1 orf, conserved hypothetical protein	Methylase	Possible N6-adenine-specific methylase	Similar to methyltransferase	conserved hypothetical protein	Similar to putative methylase YhhF of Escherichia coli	N6-adenine-specific methylase	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 conserved hypothetical protein TIGR00095	Methyltransferase	
HELPY00790	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00791	Putative uncharacterized protein	hypothetical protein	identified by similarity to OMNI:HP0812; match to protein family HMM PF02636 conserved hypothetical protein	Putative uncharacterized protein	Putative	possible cyclopropane-fatty-acyl-phospholipid synthase	conserved hypothetical protein	identified by similarity to GB:AAO91321.1; match to protein family HMM PF02636 conserved hypothetical protein	Putative uncharacterized protein	protein of unknown function DUF185	hypothetical protein	conserved hypothetical protein Function unclear	conserved hypothetical protein identified by match to protein family HMM PF02636	Hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	conserved hypothetical protein homologous to ATP synthase beta subunit/transription termination factor rho [Brucella melitensis 16M],InterPro; Protein of unknown function DUF185 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00792	Putative uncharacterized protein	hypothetical conserved protein	Metallo-beta-lactamase family protein	Metallo-beta-lactamase superfamily protein	Putative uncharacterized protein	Glyoxylase II family protein	Putative uncharacterized protein	Putative uncharacterized protein ycbL	CDS_ID OB1916 hypothetical protein	similar to AL023591-10|CAA19086.1| percent identity: 36 in 211 aa conserved hypothetical protein	Putative uncharacterized protein	Predicted Zn-dependent hydrolase of metallo-beta- lactamase superfamily	BH2820 protein	SC9C5.33c, possible hydrolase, len: 235 aa; similar to SW:YCBL_ECOLI (EMBL:AE000195) Escherichia coli hypothetical 23.8 kD protein in MukB-AspC intergenic region YcbL, 215 aa; fasta scores: opt: 284 z-score: 328.0 E(): 8.4e-11; 32.6% identity in 215 aa overlap and to TR:CAB83688 (EMBL:AL162753) Neisseria meningitidis putative hydrolase NMA0387, 210 aa; fasta scores: opt: 239 z-score: 277.9 E(): 5.2e-08; 32.5% identity in 206 aa overlap. Contains Pfam match to entry PF00753 lactamase_B, Metallo-beta-lactamase superfamily possible hydrolase	Zn-dependent hydrolases, including glyoxylases	Glyoxylase II family protein	hypothetical protein	Residues 1 to 215 of 215 are 99 pct identical to residues 1 to 215 of a 215 aa protein from Escherichia coli K12 ref: NP_415447.1 orf, conserved hypothetical protein	Metallo-beta-lactamase superfamily protein	YcbL protein	Putative beta-lactamase-like protein	Similar to probable hydrolase YcbL of Escherichia coli	Probable metallo-beta-lactamase	conserved hypothetical protein, metallo-beta-lactamase superfamily	identified by similarity to OMNI:NTL01HP00742; match to protein family HMM PF00753 metallo-beta-lactamase family protein	Uncharacterized protein Rv2581c/MT2658	Mb2612c, -, len: 224 aa. Equivalent to Rv2581c, len: 224 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 224 aa overlap). Possible glyoxalase II (EC 3.1.2.6), equivalent to Q49649|YP81_MYCLE|ML0493|MLCB1259.11|B1177_C3_247 HYPOTHETICAL 23.9 KDA PROTEIN from Mycobacterium leprae (218 aa), FASTA scores: opt: 1264, E(): 7.8e-73, (82.0% identity in 222 aa overlap). Also highly similar to Q9KXP1|SC9C5.33c POSSIBLE HYDROLASE from Streptomyces coelicolor (235 aa), FASTA scores: opt: 654, E(): 2.9e-34, (46.8% identity in 220 aa overlap); and similar to Q9CI24|YFCI HYPOTHETICAL PROTEIN from Lactococcus lactis (subsp. lactis) (Streptococcus lactis) (210 aa), FASTA scores: opt: 360, E(): 9.9e-16, (35.0% identity in 217 aa overlap); AAK75726|SP1646 METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN from Streptococcus pneumoniae (209 aa), FASTA scores: opt: 320, E(): 3.3e-13, (35.85% identity in 198 aa overlap); AAK80229|CAC2272 PREDICTED ZN-DEPENDENT HYDROLASE OF METALLO-BETA-LACTAMASE SUPERFAMILY from Clostridium acetobutylicum (199 aa), FASTA scores: opt: 282, E(): 8e-11, (32.7% identity in 217 aa overlap); etc. Equivalent to AAK46971 from Mycobacterium tuberculosis strain CDC1551 (246 aa) but shorter 22 aa. BELONGS TO THE GLYOXALASE II FAMILY.  COFACTOR: BINDS TWO ZINC IONS. POSSIBLE GLYOXALASE II (HYDROXYACYLGLUTATHIONE HYDROLASE) (GLX II)	Beta-lactamase-like conserved protein YqgX	conserved hypothetical protein	
HELPY00793	Thiamin biosynthesis protein	Putative molybdopterin biosynthesis protein	MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN	Putative adenylyltransferase	molybdenum cofactor biosynthesis protein	Molybdopterin biosynthesis MoeB protein	2SC3B6.02, possible sulfurylase, len: 392 aa; similar to TR:AAF33130 (EMBL:AF196567) Pseudomonas stutzeri putative sulfurylase, 391 aa; fasta scores: opt: 1433 z-score: 1624.0 E(): 0; 56.2% identity in 395 aa overlap and to SW:MOEB_ECOLI (EMBL:M21151) Escherichia coli molybdopterin biosynthesis MoeB protein, 249 aa; blastp socres: Score = 526 (185.2 bits), Expect = 1.1e-50, P = 1.1e-5, Identities = 106/249 (42%), Positives = 156/249 (62%). Contains Pfam match to entry PF00899 ThiF_family, ThiF family and PF00581 Rhodanese, Rhodanese-like domain putative sulfurylase	similar to molybdopterin biosynthesis protein hypothetical protein	conserved gene sulfurylase ThiF	similar to molybdopterin biosynthesis protein hypothetical protein	Molybdopterin biosynthesis protein MoeB	molybdopterin biosynthesis MoeB protein	Molybdopterin biosynthesis protein	MoeZ	Molybdopterin biosynthesis protein	Molybdopterin biosynthesis protein MoeB	Thiamine biosynthesis protein ThiF	similar to BR0004, molybdopterin biosynthesis protein MoeB MoeB, molybdopterin biosynthesis protein	Molybdopterin biosynthesis protein	MOLYBDOPTERIN-SYNTHASE SULFURYLASE	COG0476 ThiF dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family thiamine biosynthesis protein	COG0476 molybdopterin biosynthesis protein	Similar to Synechococcus sp. MPT-synthase sulfurylase MoeB SWALL:O54307 (EMBL:Y16560) (391 aa) fasta scores: E(): 7.3e-33, 50% id in 224 aa, and to Bacteroides thetaiotaomicron molybdopterin biosynthesis protein BT0648 SWALL:AAO75755 (EMBL:AE016928) (230 aa) fasta scores: E(): 2.4e-64, 75.75% id in 231 aa putative molybdopterin biosynthesis-related protein	Molybdopterin biosynthesis MoeB protein, putative	molybdopterin biosynthesis protein	Molybdopterin biosynthesis MoeB protein	MoeB molybdopterin biosynthesis protein	Bifunctional enzyme, contains ThiF/HesB family NAD/FAD binding and Rhodanese similarity domains	
HELPY00794	Chemotaxis protein motA	CDS_ID OB2545 motility protein A	Chemotaxis motility protein A	Lin0693 protein	Chemotaxis motility protein A	flagellar motor protein MotA	conserved gene flagellar motor protein MotA	Chemotaxis motA protein	identified by similarity to SP:P28611; match to protein family HMM PF01618 chemotaxis protein MotA, putative	InterProMatches:IPR000540; required for flagellar motor rotation, Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Biological Process: chemotaxis (GO:0006935), Cellular Component: membrane (GO:0016020) motility protein A	Flagellar motor rotation motility protein A	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark MotA protein	Flagellar motor component MotA	MotA protein	Chemotaxis motA protein	identified by similarity to SP:P28611; match to protein family HMM PF01618 chemotaxis protein MotA	MotA protein	identified by similarity to SP:P28611; match to protein family HMM PF01618 chemotaxis MotA protein	chemotaxis motA protein (motility protein A)	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type m : membrane component putative Chemotaxis motA protein	MotA/TolQ/ExbB proton channel	chemotaxis transmembrane protein MotA	MotA/TolQ/ExbB proton channel	flagellar motor component MotA	flagellar motor rotation protein	MotA protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	periplasmic sensor signal transduction histidine kinase	hypothetical protein similarity to COG1291 Flagellar motor component(Evalue: 2E-51)	Endoflagellar motor protein inner membrane protein	
HELPY00795	Chemotaxis protein motB	Flagellar motor protein	MotB protein	Similar to chemotaxis MotB protein hypothetical protein	conserved gene flagellar motor protein MotB	Similar to chemotaxis MotB protein hypothetical protein	Chemotaxis motB protein	identified by similarity to SP:P28612; match to protein family HMM PF00691 chemotaxis protein MotB, putative	InterProMatches:IPR006665; required for flagellar motor rotation,Cellular Component: outer membrane (sensu Gram-negative Bacteria) (GO:0009279) motility protein B	Flagellar motor rotation motility protein B	Flagellar motor component MotB	Chemotaxis motB protein	identified by similarity to SP:P28612; match to protein family HMM PF00691 chemotaxis protein MotB	Flagellar motor protein MotB	identified by similarity to SP:P28612; match to protein family HMM PF00691 putative chemotaxis MotB protein	identified by match to protein family HMM PF00691 motB protein	identified by similarity to SP:P28612; match to protein family HMM PF00691 flagellar motor protein MotB	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type m : membrane component putative chemotaxis protein	OmpA/MotB	outer membrane chemotaxis MotB protein	probable chemotaxis protein identified by match to protein family HMM PF00691	OmpA/MotB	OmpA/MotB	OmpA/MotB	OmpA/MotB	outer membrane protein, OmpA/MotB family	flagellar motor rotation protein	Hypothetical protein	putative transcriptional regulator, Fis family	
HELPY00796	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00797	Osmoprotection protein	ABC transporter permease component	Glycine betaine transport system permease protein	Possible choline ABC transporter permease and substrate binding protein	Proline/glycine betaine ABC-type transport system, permease component fused to periplasmic component	Choline transporter	proline/glycine betaine ABC transporter permease	Choline ABC transporter permease and substrate binding protein	Putative uncharacterized protein gbs2089	hypothetical protein, similar to choline transporter	Putative osmoprotection binding protein	identified by match to PFAM protein family HMM PF00528 amino acid ABC transporter, amino acid-binding protein/permease protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0776 ABC transporter permease protein	hypothetical protein, similar to choline transporter	best blastp match gb|AAK34006.1| (AE006555) putative ABC transporter (binding protein) [Streptococcus pyogenes M1 GAS] putative ABC transporter (binding protein)	identified by similarity to SP:O32243; match to protein family HMM PF00528; match to protein family HMM PF04069 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein	ABC transporter membrane-spanning permease - choline transporter	glycine betaine/choline ABC transporter, ATP-binding protein	N-terminal region is similar to Bacillus subtilis choline transport system permease protein ProW SW:OPBB_BACSU (Q45461) (217 aa) fasta scores: E(): 7.2e-30, 48.990% id in 198 aa. Full length CDS is similar to Streptococcus pyogenes putative ABC transporter SPY1134 TR:Q99ZQ2 (EMBL:AE006555) (510 aa) fasta scores: E(): 1.5e-91, 53.242% id in 509 aa ABC transporter permease protein	identified by similarity to SP:O32243; match to protein family HMM PF00528; match to protein family HMM PF04069 glycine betaine/carnitine/choline ABC transporter, permease/substrate-binding protein	identified by similarity to EGAD:37692; match to protein family HMM PF00528; match to protein family HMM PF04069 osmoprotectant ABC transporter, permease protein	similar to gi|57285745|gb|AAW37839.1| [Staphylococcus aureus subsp. aureus COL], percent identity 80 in 504 aa, BLASTP E(): 0.0 putative periplasmic glycine betaine choline-binding protein of an ABC-type transport system	Putative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits	osmoprotectant ABC transporter, permease identified by match to protein family HMM PF00528; match to protein family HMM PF04069	glycine betaine/carnitine/choline ATP-binding ABC transport protein	Substrate-binding region of ABC-type glycine betaine transport system	Glycine betaine transport system permease protein , Glycine betaine-binding protein	Substrate-binding region of ABC-type glycine betaine transport system	Substrate-binding region of ABC-type glycine betaine/choline transport system	
HELPY00798	Osmoprotection protein	Osmoprotection ATP-binding protein	osmoprotection protein	osmoprotection ATP-binding protein putative glycine betaine/choline/proline transport system ATP-binding protein,proV; putative glycine betaine/choline/proline transport system ATP-binding protein High confidence in function and specificity	Osmoprotection protein	Osmoprotection protein	Osmoprotection ABC transporter	

HELPY00799	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00800	UvrABC system protein C	excinuclease ABC subunit C	excinuclease ABC subunit C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	Excinuclease ABC nuclease subunit C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	CDS_ID OB2116; deoxyribodipyrimidine photolyase excinuclease ABC subunit C	EXCINUCLEASE ABC SUBUNIT C	similar to AE007017-2|AAK45728.1| percent identity: 63 in 679 aa putative excinuclease ABC subunit C	UvrABC system protein C	excinuclease ABC subunit C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	SCC54.13c, uvrC, ABC excision nuclease subunit C, len: 728aa; member of a conserved family eg, SW:UVRC_MYCTU uvrC, excinuclease ABC subunit C from Mycobacterium tuberculosis (646 aa) fasta scores; opt: 1516, z-score: 1657.1, E(): 0, (58.4% identity in 693 aa overlap) and SW:UVRC_BACSU uvrC, excinuclease ABC subunit C from Bacillus subtilis (598 aa) fasta scores; opt: 567, z-score: 619.9, E(): 3.2e-27, (34.0% identity in 653 aa overlap). ABC excision nuclease subunit C	
HELPY00801	Homoserine dehydrogenase	homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	HOMOSERINE DEHYDROGENASE	Homoserine dehydrogenase	Homoserine dehydrogenase	CDS_ID OB0466 homoserine dehydrogenase	similar to Y00546-1|CAA68614.1| percent identity: 84 in 444 aa putative homoserine dehydrogenase	homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	SCBAC5H2.23, thrA, homoserine dehydrogenase, len: 429 aa; highly similar to SW:DHOM_CORGL (EMBL:Y00546) Corynebacterium glutamicum homoserine dehydrogenase (EC 1.1.1.3) Hom or ThrA, 445 aa; fasta scores: opt: 1592 z-score: 1742.3 E(): 0; 57.7% identity in 423 aa overlap.  Contains Pfam matches to entries PF00742 Homoserine_dh, Homoserine dehydrogenase and PF01842 ACT, ACT domain and match to Prosite entry PS01042 Homoserine dehydrogenase signature. Note: Can participate in the biosynthesis of Methionine, Lysine and Threonine (plus following steps to Valine, Leucine and Isoleucine) homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	Homoserine dehydrogenase	identified by similarity to EGAD:7108; match to protein family HMM PF00742; match to protein family HMM PF03447 homoserine dehydrogenase	homoserine dehydrogenase	identified by similarity to SP:P08499; match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447 homoserine dehydrogenase	Homoserine dehydrogenase	homoserine dehydrogenase	Homoserine dehydrogenase	
HELPY00802	UPF0102 protein HP_0823	UPF0102 protein RPA0323	UPF0102 protein TWT_455	identified by similarity to SP:O25499; match to protein family HMM PF02021 conserved hypothetical protein	UPF0102 protein HH_1751	Hypothetical UPF0102 protein JHP0762	Hypothetical protein	Similar to Thermotoga maritima hypothetical protein Tm0253 SWALL:Y253_THEMA (SWALL:Q9WY95) (108 aa) fasta scores: E(): 9.1e-09, 41.5% id in 106 aa conserved hypothetical protein	Best Blastp Hit: pir||A82030 hypothetical protein NMA0341 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379095|emb|CAB83644.1| (AL162752) hypothetical protein NMA0341 [Neisseria meningitidis] COG0792 Predicted endonuclease distantly related to conserved hypothetical protein	Protein of unknown function UPF0102	Protein of unknown function UPF0102	protein of unknown function UPF0102	Putative uncharacterized protein	protein of unknown function UPF0102	Protein of unknown function UPF0102	hypothetical protein	Endonuclease	conserved hypothetical protein TIGR00252 identified by similarity to SP:Q895L7; match to protein family HMM PF02021	hypothetical protein similar to jhp_0762; identified by match to protein family HMM PF02021	conserved hypothetical protein similar to HP0823 Specificity unclear	protein of unknown function UPF0102 PFAM: protein of unknown function UPF0102 KEGG: rpc:RPC_0320 protein of unknown function UPF0102	conserved hypothetical protein identified by match to protein family HMM PF02021	hypothetical protein UPF0102 PFAM: protein of unknown function UPF0102 KEGG: pfo:Pfl_4685 protein of unknown function UPF0102	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	UPF0102 protein JJD26997_0163	Predicted endonuclease	
HELPY00803	Thioredoxin	thioredoxin	thioredoxin (TRX)	Putative thioredoxin	Thioredoxin	Thioredoxin	THIOREDOXIN C-1	Putative thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin-1	CDS_ID OB2117 thioredoxin	THIOREDOXIN	similar to M14736-1|AAA22049.1| percent identity: 51 in 107 aa putative thioredoxin	Probable thioredoxin	Thioredoxin, selenocysteine-containing	Thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	SCH24.11c, trxA, thioredoxin, len: 110 aa; previously sequenced (EMBL:AJ007313), TrxA. Contains Pfam match to entry PF00085 thiored, Thioredoxin, score 140.90, E-value 3.6e-41 and PS00194 Thioredoxin family active site thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	Residues 18 to 144 of 144 are 100 pct identical to residues 1 to 127 of a 127 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290411.1 thioredoxin 1	
HELPY00804	Thioredoxin reductase	thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	CDS_ID OB2469; general stress protein thioredoxin reductase (NADPH)	similar to AF023161-1|AAB80939.1| percent identity: 68 in 312 aa putative thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase NADPH	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292 thioredoxin-disulfide reductase	Thioredoxin reductase	identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292 thioredoxin-disulfide reductase	thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	
HELPY00805	Lipooligosaccharide 5G8 epitope biosynthesis- associated protein	beta-1,4-galactosyltransferase	pbeta-1,4-galactosyltransferase (Q57394) Lipooligosaccharide biosynthesis protein lic2B Function unclear	LPS glycosyltransferase subfamily identified by match to protein family HMM PF01755	Putative uncharacterized protein	Glycosyl transferase family 25	Glycosyl transferase family 25	Lipooligosaccharide 5G8 epitope biosynthesis- associated protein	putative glycosyltransferase	Beta-1,4-galactosyl transferase	Beta-1,4-galactosyltransferase	
HELPY00806	Ss-DNA binding protein 12RNP2	Probable nucleic acid-binding protein	Similar to N-terminal part of eukaryotic RNA-binding protein precursor hypothetical protein	conserved gene RNA binding protein, cold-inducible rrm	RNA-binding protein, RRM domain	Putative uncharacterized protein	Putative	RNA-binding protein RbpD	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pf : putative factor putative RNA-binding protein	go_component: nucleus [goid 0005634]; go_component: nucleolus [goid 0005730]; go_function: single-stranded DNA binding [goid 0003697]; go_function: RNA binding [goid 0003723]; go_process: ribosomal small subunit assembly and maintenance [goid 0000028]; go_process: rRNA processing [goid 0006364] glycine-rich RNA-binding protein	RNA-binding protein, RRM domain	RNA-binding region RNP-1	RNA-binding protein, RNP-1	RNA-binding region RNP-1 (RNA recognition motif)	RNA-binding region RNP-1	RNA-binding region RNP-1 (RNA recognition motif)	RNA-binding protein, RNP-1	RNA binding protein	Putative RNA-binding protein	RNA-binding region RNP-1 identified by match to protein family HMM PF00076	RNA-binding protein RbpD	RNP-1-like RNA-binding protein PFAM: RNP-1 like RNA-binding protein KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif)	RNA-binding protein RbpD	RNA-binding region RNP-1	RNP-1 like RNA-binding protein	RNA-binding protein HP0827: ss-DNA binding protein 12RNP2 precursor High confidence in function and specificity	RNA-binding protein identified by match to protein family HMM PF00076	RNA-binding region RNP-1	
HELPY00807	ATP synthase subunit a	F0F1-type ATP synthaseA chain	ATP synthase subunit a	ATP synthase subunit a	ATP synthase CF0 subunit IV	ATP synthase A chain	ATP synthase subunit a	ATP synthase subunit a	CDS_ID OB2981 H(+)-transporting ATP synthase A chain	ATP synthase subunit a	ATP synthase subunit a	Fo ATP synthase subunit A	ATP synthase subunit a	ATP synthase subunit a	ATP synthase subunit a	ATP synthase subunit a	ATP synthase subunit a	2SC6G5.11, atpB, ATP synthase A chain (EC 3.6.1.34), len: 273aa; similar to many eg. SW:P15012 (ATP6_RHORU) ATP synthase A chain from Rhodospirillum rubrum (241 aa) fasta scores; opt: 356, z-score: 432.3, E(): 1.3e-16, 35.7% identity in 252 aa overlap. Identical to SW:P50012 (ATP6_STRLI) ATP synthase A chain from Streptomyces lividans. Contains Pfam match to entry PF00119 ATP-synt_A, ATP synthase A chain and Prosite match to PS00449 ATP synthase a subunit signature. Contains possible membrane-spanning hydrophobic regions. ATP synthase A chain	ATP synthase subunit a	ATP synthase subunit a	ATP synthase subunit a	ATP synthase A chain transmembrane protein	ATP synthase subunit a	ATP synthase subunit a	ATP synthase subunit a	identified by similarity to EGAD:6316; match to protein family HMM PF00119; match to protein family HMM TIGR01131 ATP synthase F0, A subunit	ATP synthase A chain	ATP synthase subunit a	identified by similarity to SP:P15012; match to protein family HMM PF00119; match to protein family HMM TIGR01131 ATP synthase F0, A subunit	
HELPY00808	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	CDS_ID OB0010 inosine-5'-monophosphate dehydrogenase	similar to AX064663-1|CAC25571.1| percent identity: 88 in 506 aa IMP dehydrogenase	inosine monophosphate dehydrogenase	Inosine-5-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	IMP dehydrogenase	SCD63.02, guaB, inosine 5' monophosphate dehydrogenase, len: 501 aa; highly similar to previously sequenced TR:O86844 (EMBL:AJ010601) Streptomyces coelicolor inosine 5' monophosphate dehydrogenase, 523 aa; fasta scores: opt: 2626 z-score: 2896.3 E(): 0; 84.9% identity in 509 aa overlap. Contains Pfam matches to entries PF01574 IMPDH_N, IMP dehydrogenase / GMP reductase N terminus, 2x PF00571 CBS, CBS domain and PF00478 IMPDH_C, IMP dehydrogenase / GMP reductase C terminus and match to Prosite entry PS00487 IMP dehydrogenase / GMP reductase signature inosine 5' monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Inosine-5-prime-monophosphate dehydrogenase	Inosine-5'-monophosphate dehydrogenase	Residues 1 to 490 of 490 are 100 pct identical to residues 22 to 511 of a 511 aa protein from Escherichia coli dbj: BAA16395.1 IMP dehydrogenase	
HELPY00809	Glutamyl-tRNA(Gln) amidotransferase subunit A	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (Glu-ADT subunit A)	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	CDS_ID OB0765 glutamyl-tRNA amidotransferase subunit A	GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A	similar to Z99263-13|CAB16428.1| percent identity: 71 in 488 aa putative glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glu-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glu-tRNA amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase, A subunit	SC8D9.11, probable Glu-tRNA-Gln amidotransferase subunit A, gatA, len: 497aa; similar to many eg. TR:O06491 (EMBL:AF008553) Glu-tRNAGln amidotransferase subunit A, gatA, from Bacillus subtilis (486 aa) fasta scores; opt: 1443, z-score: 1512.5, E(): 0, (52.0% identity in 465 aa overlap). probable Glu-tRNA Gln amidotransferase subunit	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	
HELPY00810	Dephospho-CoA kinase	probable dephospho-CoA kinase	hypothetical conserved protein	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	CDS_ID OB2161; dephospho-CoA kinase dephosphocoenzyme A kinase	similar to AX064449-1|CAC25465.1| percent identity: 81 in 199 aa dephospho-CoA kinase	Dephospho-CoA kinase	hypothetical protein	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	SC7H2.10c, coaE, dephospho-CoA kinase, len: 200 aa; similar to many e.g. SW:YTAG_BACSU hypothetical protein from Bacillus subtilis (197 aa) fasta scores; opt: 508, z-score: 575.3, E(): 1e-24, (42.2% identity in 192 aa overlap). Also similar to the N-terminal half of SW:Y14N_MYCTU hypothetical protein from Mycobacterium tuberculosis (407 aa) fasta scores; opt: 672, z-score: 751.8, E(): 0, (54.3% identity in 199 aa overlap). Similar to SW:COAE_ECOLI (EMBL:AE000119) Escherichia coli dephospho-CoA kinase (EC 2.7.1.24) CoaE or B0103, 206 aa; fasta scores: opt: 444 Z-score: 491.1 E(): 1e-19; 44.509% identity in 173 aa overlap. Contains Pfam match to entry PF01121 UPF0038, Uncharacterized protein family UPF0038 and Prosite match to PS01294 Uncharacterized protein family UPF0038 signature dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Residues 1 to 206 of 206 are 98 pct identical to residues 1 to 206 of a 206 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285799.1 putative DNA repair protein	
HELPY00811	Spermidine synthase	Spermidine synthase	Spermidine synthase	Spermidine synthase 1	InterProMatches:IPR001045; spermidine biosynthesis,Molecular Function: catalytic activity (GO:0003824) spermidine synthase	spermidine synthase	Spermidine synthase	Spermidine synthase	Spermidine synthase	spermidine synthase; putrescine aminopropyltransferase	identified by similarity to SP:P09158; match to protein family HMM PF01564; match to protein family HMM TIGR00417 spermidine synthase	Spermine synthase	Spermidine synthase-like	spermidine synthase TIGRFAM: spermidine synthase: (9e-127) PFAM: Spermine synthase: (2.9e-102) KEGG: psb:Psyr_1864 spermine synthase, ev=1e-88, 60% identity	spermidine synthase	spermidine synthase identified by match to protein family HMM PF01564; match to protein family HMM TIGR00417	Spermidine synthase	spermidine synthase	spermidine synthase identified by match to protein family HMM PF01564; match to protein family HMM TIGR00417	(O25503) Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (SPDSY) High confidence in function and specificity	spermidine synthase	spermidine synthase	Spermidine synthase	spermidine synthase	Spermidine synthase	spermidine synthase equivalent gene in S.pneumoniae TIGR4 = SP0918; equivalent gene in S.pneumoniae R6 = spr0819; identified by match to protein family HMM PF01564; match to protein family HMM TIGR00417	spermidine synthase	Spermidine synthase	spermine synthase KEGG: pfo:Pfl_1732 spermine synthase	
HELPY00812	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00813	GTP-binding protein engA	probable GTP binding protein	GTP-binding protein	GTP-binding protein engA	GTP-binding protein engA	GTPase family protein	ORF496 putative N-terminal transit sequence hypothetical protein	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	Putative GTP-binding protein	GTP-binding protein engA	CDS_ID OB1797 GTP binding protein	GTP-binding protein engA	similar to AL445403-11|CAC12931.1| percent identity: 54 in 491 aa conserved hypothetical protein	GTP-binding protein engA	GTP-binding protei	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	
HELPY00814	DNA-binding protein HU	DNA-binding protein HU (DNA-binding protein II)	DNA-binding protein HU	DNA-binding protein HU, form B	DNA-binding protein hu homolog	DNA-BINDING PROTEIN HU-ALPHA	DNA-binding protein HU	DNA-binding protein HU-beta	CDS_ID OB1792 non-specific DNA-binding protein	DNA-binding protein HRm	DNA-binding protein HU	DNA-binding protein HU	DNA-binding protein HU-1	DNA-binding protein HU	Bacterial nucleoid DNA-binding protein	DNA-binding protein HU	Hup protein	DNA-binding protein	Residues 1 to 90 of 90 are 98 pct identical to residues 1 to 90 of a 90 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286182.1 DNA-binding protein HU-beta, NS1 (HU-1)	Bacterial histone-like DNA-binding protein	HupA protein	DNA-binding protein HU-beta, NS1	DNA-binding protein HU	DNA binding protein HU	DNA-binding protein hu-beta	histone-like DNA-binding protein	DNA-binding protein HU	Bacterial nucleoid DNA-binding protein	DNA-binding protein II DNA-binding protein HU	


HELPY00817	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00818	Outer membrane protein P1	Putative Outer membrane protein	Membrane protein	outer membrane protein P1	membrane protein identified by match to protein family HMM PF03349	outer membrane transport protein P1 (P59741) Long-chain fatty acid transport protein precursor (Outer membrane fadL protein) (Outer membrane flp protein) Function unclear	Long-chain fatty acid transport protein	Outer membrane protein transport protein	Membrane protein	Membrane protein	Outer membrane protein P1	Outer membrane protein P1	Outer membrane transport protein P1	Outer membrane protein P1	
HELPY00819	FlaA1 protein	Predicted nucleoside-diphosphate sugar epimerase	UDP-glucose 4-epimerase	identified by similarity to OMNI:NTL01CJ01235; match to protein family HMM PF02719 polysaccharide biosynthesis protein	Biological Process: biosynthesis (GO:0009058) Polysaccharide biosynthesis protein	Flagellar glycosylation protein FlmA	Putative SUGAR NUCLEOTIDE BIOSYNTHESIS PROTEIN	capsular polysaccharide biosynthesis protein	identified by match to protein family HMM PF02719; match to protein family HMM PF07993 polysaccharide biosynthesis protein	Putative uncharacterized protein	Predicted nucleoside-diphosphate sugar epimerases CapD protein	Short-chain dehydrogenase/reductase	Putative nucleoside-diphosphate sugar epimerases	dTDP-glucose 4,6-dehydratase	Predicted nucleoside-diphosphate sugar epimerase	Polysaccharide biosynthesis protein CapD	NAD-dependent epimerase/dehydratase	Putative nucleoside-diphosphate sugar epimerase CapD	Polysaccharide biosynthesis protein CapD	polysaccharide biosynthesis protein CapD	capsular polysaccharide biosynthesis protein	Polysaccharide biosynthesis protein CapD	Polysaccharide biosynthesis protein CapD	UDP-GlcNAc C6 dehydratase	Polysaccharide biosynthesis protein CapD	Polysaccharide biosynthesis protein CapD	hypothetical protein similarity to COG0451 Nucleoside-diphosphate-sugar epimerases(Evalue: 7E-89)	polysaccharide biosynthesis protein CapD	Polysaccharide biosynthesis protein CapD	
HELPY00820	Pantothenate metabolism flavoprotein	pantothenate metabolism flavoprotein Dfp homolog	pantothenate metabolism flavoprotein	Putative pantothenate metabolism flavoprotein	Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	Phosphopantothenoylcysteine synthetase/decarboxylase	PHOSPHOPANTOTHENATE-CYSTEINE LIGASE , PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE	Pantothenate metabolism flavoprotein	Coenzyme A biosynthesis bifunctional protein coaBC	DNA/pantothenate metabolism flavoprotein homolog	Flavoprotein affecting synthesis of DNA and pantothenate metabolism	CDS_ID OB1504; flavoprotein pantothenate metabolism	similar to AX064343-1|CAC25412.1| percent identity: 78 in 410 aa putative flavoprotein	pantothenate metabolism flavoprotein	DNA/pantothenate metabolism flavoprotein	Phosphopantothenoylcysteine decarboxylase	Flavoprotein involved in panthothenate metabolism, YLOI B.subtilis ortholog	DNA/pantothenate metabolism flavoprotein	Flavoprotein	SC9C5.01c, probable flavoprotein homologue (partial), len: >375 aa; similar to SW:DFP_ECOLI (EMBL:L10328) Escherichia coli DNA/pantothenate metabolism flavoprotein Dfp, 430 aa; fasta scores: opt: 846 z-score: 937.1 E(): 0; 43.8% identity in 347 aa overlap SCL6.34c, probable flavoprotein homologue (partial), len: >89 aa; highly similar to TR:Q9X4Q1 (EMBL:AF117274) Streptomyces spectabilis flavoprotein homolog Dfp (fragment), 174 aa; fasta scores: opt: 417 z-score: 566.0 E(): 4.1e-24; 76.4% identity in 89 aa overlap and to C-teminal region of SW:DFP_SYNY3 (EMBL:D90910) Synechocystis sp. DNA/pantothenate metabolism flavoprotein homolog Dfp, 402 aa; fasta scores: opt: 199 z-score: 272.3 E(): 9.6e-08; 33.7% identity in 89 aa overlap putative flavoprotein homologue (partial)	Phosphopantothenoylcysteine synthetase/decarboxylase	Flavoprotein	Coenzyme A biosynthesis bifunctional protein coaBC	Lin1939 protein	DNA/pantothenate metabolism flavoprotein	Residues 1 to 430 of 430 are 99 pct identical to residues 1 to 430 of a 430 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290219.1 flavoprotein affecting synthesis of DNA and pantothenate metabolism	DNA/pantothenate metabolism flavoprotein	Flavoprotein	phosphopantothenoylcysteine synthetase/decarboxylase	
HELPY00821	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	Putative flavoprotein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00822	Probable thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Putative thiamin-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	CDS_ID OB0472 thiamine phosphate synthase chain B	Thiamine-phosphate pyrophosphorylase	Residues 2 to 212 of 212 are 99 pct identical to residues 1 to 211 of a 211 aa protein from Escherichia coli O157:H7 ref: NP_312943.1 thiamin biosynthesis protein ThiE	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	identified by similarity to EGAD:22506; match to protein family HMM PF02581; match to protein family HMM TIGR00693 thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	InterProMatches:IPR003733; substitution of the pyrophosphate of 2-methyl-4-amino-5-hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate,Molecular Function: thiamin-phosphate diphosphorylase activity (GO:0004789), Biological Process: thiamin biosynthesis (GO:0009228) thiamine-phosphate pyrophosphorylase	thiamine-phosphate pyrophosphorylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark thiamin-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	IPR003733: Thiamine monophosphate synthase thiamin phosphate synthase (thiamine phosphate pyrophosphorylase)	similar to Salmonella typhi CT18 thiamine-phosphate pyrophosphorylase thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	Thiamine-phosphate pyrophosphorylase	thiamin phosphate synthase (chain B)	
HELPY00823	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase	PHOSPHOMETHYLPYRIMIDINE KINASE , HYDROXYMETHYLPYRIMIDINE KINASE	Phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase	CDS_ID OB0474 phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase	Hydroxyethylthiazole kinase ThiM/ThiK	Phosphomethylpyrimidine kinase	SC7A1.07, thiD, phosphomethylpyrimidine kinase , len: 269aa; similar to many eg. SW:THID_SALTY ThiD, phosphomethylpyrimidine kinase from Salmonella typhimurium (266 aa) fasta scores; opt: 588, z-score: 737.2, E(): 0, (42.1% identity in 259 aa overlap). Note: thiAB (arbitrarily named) previously mapped to this region of the chromosome. phosphomethylpyrimidine kinase	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Lin0342 protein	Phosphomethylpyrimidine kinase	Phoshomethylpyrimidine kinase protein	Residues 1 to 266 of 266 are 99 pct identical to residues 1 to 266 of a 266 aa protein from Escherichia coli K12 ref: NP_416606.1 phosphomethylpyrimidine kinase	Putative phosphomethylpyrimidine kinase	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	ThiD protein	Probable bifunctional protein: hydroxy- phosphomethylpyrimidine kinase and hydroxy-methylpyrimidine kinase	Phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase	identified by similarity to EGAD:97546; match to protein family HMM PF00294; match to protein family HMM TIGR00097 phosphomethylpyrimidine kinase	identified by similarity to SP:P76422; match to protein family HMM TIGR00097 phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase	Phosphomethylpyrimidine kinase	identified by match to protein family HMM TIGR00097 phosphomethylpyrimidine kinase	
HELPY00824	Hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	similar to AX064251-1|CAC25366.1| percent identity: 74 in 267 aa putative hydoxyethylthiazole kinase	Hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	Residues 1 to 262 of 262 are 98 pct identical to residues 1 to 262 of a 262 aa protein from Escherichia coli K12 ref: NP_416607.1 hydoxyethylthiazole kinase	Hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	identified by similarity to EGAD:13938; match to protein family HMM PF02110; match to protein family HMM TIGR00694 hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	Hydoxyethylthiazole kinase protein	InterProMatches:IPR000417; phosphorylation of 4-methyl-5-(beta-hydroxythyl)thiazole,Molecular Function: hydroxyethylthiazole kinase activity (GO:0004417), Biological Process: thiamin biosynthesis (GO:0009228) hydroxyethylthiazole kinase	hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	IPR000417: Hydroxyethylthiazole kinase family hydoxyethylthiazole kinase (THZ kinase)	similar to Salmonella typhi CT18 hydroxyethylthiazole kinase hydroxyethylthiazole kinase	Similar to Escherichia coli hydroxyethylthiazole kinase ThiM SWALL:THIM_ECOLI (SWALL:P76423) (262 aa) fasta scores: E(): 1.1e-26, 36.62% id in 243 aa. No database matches are to predicted Chlamydiaceae proteins. putative hydroxyethylthiazole kinase	Hydroxyethylthiazole kinase	truncated hydroxyethyl thiazole kinase	Hydroxyethylthiazole kinase	identified by match to PFAM protein family HMM PF02110 hydroxyethylthiazole kinase	Ortholog of S. aureus MRSA252 (BX571856) SAR2181 putative hydroxyethylthiazole kinase	hydroxyethyl thiazole kinase	identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694 hydroxyethylthiazole kinase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme hydoxyethylthiazole kinase	
HELPY00825	Type I restriction enzyme R protein	Type I restriction enzyme r protein	Putative type I restriction-modification system, helicase subunits	Type I restriction enzyme	Type-1 restriction enzyme R protein	Type I site-specific deoxyribonuclease HsdR	Similar to C-terminal part of type I restriction enzyme pseudo hypothetical protein	Type I site-specific deoxyribonuclease, HsdR subunit	identified by similarity to EGAD:10320; match to protein family HMM PF04313; match to protein family HMM TIGR00348 type I restriction-modification system, R subunit	Type I restriction enzyme R protein	Type I restriction-modification system endonuclease	probable type I restriction enzyme restriction chain	TYPE I RESTRICTION ENZYME	Ortholog of S. aureus MRSA252 (BX571856) SAR0196 putative type I restriction enzyme	probable type I restriction enzyme restriction chain	R protein; Similar to: T1R1_ECOLI putative type I restriction-modification system	Similar to Campylobacter jejuni type I restriction enzyme R protein HsdR SWALL:Q8RJ98 (EMBL:AF486635) (987 aa) fasta scores: E(): 2.1e-43, 40.94% id in 977 aa, and to Bacteroides thetaiotaomicron type I restriction enzyme EcoR124II R protein BT4535 SWALL:Q89Z42 (EMBL:AE016945) (942 aa) fasta scores: E(): 6.8e-162, 53.87% id in 956 aa, and to Staphylococcus aureus probable type I restriction enzyme restriction chain HsdR or mw0169 SWALL:Q8NYL9 (EMBL:AP004822) (929 aa) fasta scores: E(): 4.4e-135, 43.69% id in 920 aa putative type I restriction enzyme R protein	Similar to Escherichia coli type I restriction enzyme EcoR124II R protein HsdR SW:T1R1_ECOLI (P10486) (1033 aa) fasta scores: E(): 3.2e-17, 35.119% id in 1008 aa, and to Helicobacter pylori type I restriction enzyme R protein HP0846 TR:O25517 (EMBL:AE000595) (866 aa) fasta scores: E(): 6.6e-77, 37.355% id in 862 aa putative type I restriction enzyme	Best Blastp Hit: gb|AAF41246.1| (AE002436) type I restriction enzyme EcoR124II R protein, putative [Neisseria meningitidis MC58] COG0610 Restriction enzymes type I helicase subunits putative type I site-specific deoxyribonuclease	identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 type I restriction-modification enzyme, R subunit	similar to gi|49482437|ref|YP_039661.1| [Staphylococcus aureus subsp. aureus MRSA252], percent identity 75 in 928 aa, BLASTP E(): 0.0 putative type I site-specific restriction-modification system restriction subunit	HsdR-like, putative type I restriction deoxyribonuclease	type I restriction enzyme EcoR124II R protein	type I restriction-modification enzyme, R subunit identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348	putative type I restriction-modification system, restriction subunit COG0610	type I restriction enzyme restriction chain	type I site-specific deoxyribonuclease, HsdR family	type I restriction enzyme R protein	
HELPY00827	Type I restriction enzyme S protein	Type I restriction enzyme specificity protein HsdS	Type I restriction enzyme S protein	Type I restriction-modification system specificity determinant	TYPE I RESTRICTIONENZYME	S protein; Similar to: HI0216, T1SI_HAEIN putative type I restriction-modification system specificity protein	type i restriction enzyme EcoR124II specificity protein	Restriction modification system DNA specificity domain	Putative type I restriction-modification system, specificity determinant; restriction endonuclease	Putative uncharacterized protein	Putative Type I restriction enzyme EcoR124II specificity protein	Restriction modification system DNA specificity domain	Restriction modification system DNA specificity domain	Type I restriction modification DNA specificity family protein	Restriction modification system DNA specificity domain	Type I restriction system specificity protein	Putative type I restriction modification system specificity protein	Predicted type I restriction-modification enzyme S subunit	Putative type-1 restriction enzyme specificity	Restriction modification system DNA specificity domain protein	Putative type I restriction enzyme S subunit	pseudo	Type I restriction enzyme specificity protein	

HELPY00829	Type I restriction enzyme M protein	Type I restriction-modification system DNA methylase	RESTRICTION-MODIFICATION ENZYME SUBUNIT M1	Type I restriction enzyme	Type I site-specific deoxyribonuclease HsdM	Type I restriction enzyme M protein	Type I restriction-modification system DNA methylase	TYPE I RESTRICTION ENZYME	Putative type I restriction-modification system protein	M protein; Similar to: HI1287, T1MP_ECOLI putative type I restriction-modification system methyltransferase subunit	Type I restriction-modification system methyltransferase subunit	Best Blastp Hit: pir||F81152 type I restriction enzyme EcoR124II M protein NMB0829 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226064|gb|AAF41241.1| (AE002436) type I restriction enzyme EcoR124II M protein [Neisseria meningitidis MC58] COG0286 Type I restriction-modification system putative type I restriction-modification system methyltransferase protein	type i restriction enzyme EcoR124II M protein	type I restriction-modification system, M subunit	type I restriction enzyme M protein	Type I restriction-modification system, M subunit	Type I restriction-modification system, methyltransferase subunit cytoplasmic protein	Type I restriction-modification system, methyltransferase subunit cytoplasmic protein	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	HsdM protein	Putative type I restriction-modification system methyltransferase subunit	Putative uncharacterized protein	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	
HELPY00830	Conserved hypothetical integral membrane protein	Putative permease	Putative uncharacterized protein	Phosphatase	identified by match to protein family HMM PF01569 PAP2 family protein	conserved hypothetical protein, PAP2 family	Hypothetical protein SE2329	PAP2 superfamily protein	Mb0316, -, len: 238 aa. Equivalent to Rv0308, len: 238 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 238 aa overlap). Probable conserved integral membrane protein, with C-terminus highly similar to C-terminus of other integral membrane proteins or phosphatases e.g.  AAK25788.1|AF336822_1|13430250|AAK25789.1|AF336823_1 putative phosphatase from Streptococcus pyogenes (201 aa); Q06074 HYPOTHETICAL 24.9 KD PROTEIN (216 aa), FASTA scores: opt: 209, E(): 2e-07, (27.9% identity in 140 aa overlap). Could be a phosphatase. PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN	COG0671 Membrane-associated phospholipid phosphatase hypothetical protein	Putative uncharacterized protein ykdB	Putative uncharacterized protein gbs1995	conserved hypothetical protein	Putative	Putative permease	Ortholog of S. aureus MRSA252 (BX571856) SAR0456 putative membrane protein	conserved hypothetical protein	Conserved hypothetical, predicted membrane protein (TMS6)	phosphatidylglycerophosphatase B-related protein	phosphatidylglycerophosphatase B	similar to unknown protein	Similar to Helicobacter pylori J99 hypothetical protein JHP0787 TR:Q9ZKZ5 (EMBL:AE001509) (228 aa) fasta scores: E(): 6.9e-13, 29.767% id in 215 aa, and to Bacillus megaterium hypothetical protein TR:Q06074 (EMBL:Z21972) (216 aa) fasta scores: E(): 2.1e-10, 26.244% id in 221 aa putative membrane protein	identified by match to protein family HMM PF01569 PAP2 family protein	identified by match to protein family HMM PF01569 PAP2 family protein	Putative phosphoesterase	PA-phosphatase related phosphoesterase COG0671: Membrane-associated phospholipid phosphatase PA-phosphatase related phosphoesterase	putative membrane-associated phosphatase	PAP2 family protein identified by match to protein family HMM PF01569	hypothetical protein	
HELPY00831	Putative uncharacterized protein	identified by similarity to GP:28076667; match to protein family HMM PF04373 HrgA protein	Putative	conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein related to restriction endonuclease-replacing gene A Function unclear	HrgA protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00832	ABC transporter, ATP-binding protein	ATPase components of ABC transporter with duplicated ATPase domains	Probable atp-binding abc transporter protein	ABC transporter, ATP-binding protein	ABC transporter ATP-binding protein	ABC transport system	Putative abc transporter, ATP-binding protein	ABC transporter ATP-binding protein	Similar to Bacillus subtilis ABC transporter YkpA protein SWALL:O31716 (EMBL:Z99111) (540 aa) fasta scores: E(): 5.4e-119, 58.44% id in 539 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1242 SWALL:Q8A8C5 (EMBL:AE016931) (539 aa) fasta scores: E(): 1.9e-188, 96.82% id in 536 aa, and to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG2206 SWALL:AAQ67147 (EMBL:AE017179) (538 aa) fasta scores: E(): 1.4e-153, 78.02% id in 537 aa putative ABC transporter component	identified by match to protein family HMM PF00005 ABC transporter, ATP-binding protein	ABC transporter related	ABC transporter, ATP-binding protein	ABC transporter-related protein	ABC transporter-like	ABC transporter, fused ATPase subunits	ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein	hypothetical protein similarity to COG0488 ATPase components of ABC transporters with duplicated ATPase domains(Evalue: 0)	ABC transporter ATP-binding protein identified by match to protein family HMM PF00005; match to protein family HMM PF02463	ABC transporter ATP-binding protein High confidence in function and specificity	putative ABC transporte, ATP binding protein Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	ABC-type transporter, duplicated ATPase domains:Drug RA1 family	ATPase component of ABC transporter with duplicated ATPase domains	ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein	ABC transporter related	ABC transporter, ATP-binding protein	ABC transporter related	
HELPY00833	GMP reductase	Guanosine 5'-monophosphate oxidoreductase	GMP reductase	GMP reductase	CDS_ID OB1310 GMP reductase	GMP reductase	GMP reductase	GMP reductase	GMP reductase	GMP reductase	Residues 1 to 347 of 347 are 99 pct identical to residues 1 to 347 of a 347 aa protein from Escherichia coli K12 ref: NP_414646.1 GMP reductase	GMP reductase	GMP reductase	similar to guanosine monophosphate reductase GuaC hypothetical protein	conserved gene inosine 5'-monophosphate dehydrogenase	similar to guanosine monophosphate reductase GuaC hypothetical protein	GMP reductase	identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306 guanosine monophosphate reductase	GMP reductase	GMP reductase	GMP reductase	GMP reductase	InterProMatches:IPR005994 GMP reductase	GMP reductase	COG0516 IMP dehydrogenase-GMP reductase GMP reductase	GMP reductase	IPR001093: IMP dehydrogenase/GMP reductase; IPR003009: FMN/related compound-binding core GMP reductase	similar to Salmonella typhi CT18 GMP reductase GMP reductase	GMP reductase	
HELPY00834	Alginate O-acetylation protein	Putative alginate O-acetylation protein	DltB membrane protein	Similar to alginate o-acetyltransferase AlgI hypothetical protein	conserved gene alginate O-acetyltransferase AlgI	D-alanyl transfer protein DltB	DltB membrane protein	DltB membrane protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0895 putative activated D-alanine transport protein	DltB membrane protein	alginate O-acetyltransferase	Membrane bound O-acyl transferase, MBOAT	Similar to Bacillus subtilis putative activated D-alanine transport protein DltB SW:DLTB_BACSU (P39580) (395 aa) fasta scores: E(): 3.1e-68, 52.334% id in 407 aa.  Previously sequenced as Staphylococcus aureus hypothetical membrane transporter DltB TR:Q53662 (EMBL:D86240) (404 aa) fasta scores: E(): 1e-158, 100.000% id in 404 aa putative activated D-alanine transport protein	identified by similarity to EGAD:22430; match to protein family HMM PF03062 DltB protein	COG1696, DltB, Predicted membrane protein involved in D-alanine export. pfam03062, MBOAT, MBOAT family. The MBOAT (membrane bound O-acyl transferase) family of membrane proteins contains a variety of acyltransferase enzymes. putative alginate O-acetyltransferase	Membrane bound O-acyl transferase, MBOAT	Membrane bound O-acyl transferase, MBOAT	dltB protein identified by match to protein family HMM PF03062	D-alanine lipoteichoic acid and wall teichoic acid esterification protein	transcript_id=ENSOCUT00000000655	Membrane bound O-acyl transferase, MBOAT	membrane bound O-acyl transferase, MBOAT	Alginate O-acetyltransferase, putative	dltB protein, putative	DltB-related membrane protein inner membrane protein	membrane bound O-acyl transferase, MBOAT family protein PFAM: membrane bound O-acyl transferase, MBOAT family protein KEGG: gme:Gmet_2338 membrane bound O-acyl transferase, MBOAT	DltB-related membrane protein inner membrane protein	Predicted membrane protein	
HELPY00835	Putative uncharacterized protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	
HELPY00836	Phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	Probable phosphoheptose isomerase	probable phosphoheptose isomerase	Phosphoheptose isomerase	Possible phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	Residues 49 to 246 of 246 are 100 pct identical to residues 1 to 198 of a 198 aa protein from Escherichia coli gb: AAB08644.1 orf, conserved hypothetical protein	Phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	identified by similarity to SP:Q9AGY7; match to protein family HMM PF01380; match to protein family HMM TIGR00441 phosphoheptose isomerase	GmhA	Phosphoheptose isomerase	Mb0117, gmhA, len: 196 aa. Equivalent to Rv0113, len: 196 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 196 aa overlap). Probable gmhA (alternate gene name: lpcA), phosphoheptose isomerase (EC 5.-.-.-), similar to many e.g. AE0005|HPAE000596_11 from Helicobacter pylori (192 aa), FASTA scores: opt: 451, E(): 1.9e-24, (45.1% identity in 162 aa overlap). BELONGS TO THE SIS FAMILY, LPCA SUBFAMILY. PROBABLE PHOSPHOHEPTOSE ISOMERASE GMHA	phosphoheptose isomerase	similar to Salmonella typhi Ty2 phosphoheptose isomerase phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	Phosphoheptose isomerase	phosphoheptose isomerase	Similar to: HI1181, LPCA_HAEIN phosphoheptose isomerase	
HELPY00837	Bifunctional protein hldE	Putative uncharacterized protein	ADP-heptose synthase	Bifunctional protein hldE	Bifunctional protein hldE	Putative bifunctional protein involved in LPS core biosynthesis, hdlE	ADP-heptose synthase	Bifunctional protein hldE	Bifunctional protein hldE	Uncharacterized sugar kinase BU060	Bifunctional protein hldE	ADP-heptose synthase	Residues 1 to 477 of 477 are 99 pct identical to residues 1 to 477 of a 477 aa protein RFAE_ECOLI sp: P76658 ADP-heptose synthase	Bifunctional protein hldE	Probable adp-heptose synthase protein	Bifunctional protein hldE	ADP-heptose synthase	ADP-heptose synthase	identified by similarity to SP:P76658; match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125 D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase	Bifunctional protein hldE	bifunctional; IPR002173: Carbohydrate kinase, PfkB; IPR004820: Cytidylyltransferase; IPR004821: Cytidyltransferase-related domain putative sugar nucleotide transferase domain of ADP-L-glycero-D-manno-heptose synthase	similar to Salmonella typhi CT18 ADP-heptose synthase ADP-heptose synthase	Bifunctional protein hldE	Bifunctional protein hldE	Bifunctional protein hldE	Putative DP-heptose synthetase	Bifunctional protein hldE	D-glycero-D-manno-heptose-1-phosphate adenylyltransferase D-glycero-D-manno-heptose-7-phosphate 1-kinase	Similar to: HI1526, RFAE_HAEIN ADP-heptose synthase	
HELPY00838	ADP-L-glycero-D-mannoheptose-6-epimerase	ADP-L-glycero-D-manno-heptose-6-epimerase	ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE	Nucleoside-diphosphate-sugar epimerase	ADP-L-glycero-D-manno-heptose-6-epimerase	ADP-glyceromanno-heptose 6-epimerase	ADP-L-glycero-D-manno-heptose-6-epimerase	ADP-L-glycero-D-mannoheptose-6-epimerase	ADP-L-glycero-D-manno-heptose-6-epimerase	ADP-L-glycero-D-manno-heptose-6-epimerase	Nucleoside-diphosphate-sugar epimerase cytoplasmic protein	ADP-L-glycero-D-manno-heptose-6-epimerase TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase KEGG: cte:CT1258 ADP-L-glycero-D-mannoheptose-6-epimerase	Nucleoside-diphosphate-sugar epimerase cytoplasmic protein	ADP-L-glycero-D-manno-heptose-6-epimerase identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197	NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain KEGG: tvo:TVN0887 NDP-sugar epimerase	ADP-L-glycero-D-mannoheptose-6-epimerase (P45048) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) (ADP-glyceromanno-heptose 6-epimerase) High confidence in function and specificity	ADP-L-glycero-D-mannoheptose-6-epimerase identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197	NAD-dependent epimerase/dehydratase	NAD-dependent epimerase/dehydratase	NAD dependent epimerase/dehydratase family protein	ADP-L-glycero-D-manno-heptose-6-epimerase	ADP-L-glycero-D-mannoheptose-6-epimerase	ADP-L-glycero-D-mannoheptose-6-epimerase	NAD-dependent epimerase/dehydratase	ADP-L-glycero-D-manno-heptose-6-epimerase	NAD-dependent epimerase/dehydratase	ADP-L-glycero-D-manno-heptose-6-epimerase	Putative ADP-L-glycero-D-manno-heptose-6- epimerase	ADP-glyceromanno-heptose 6-epimerase	
HELPY00839	D,D-heptose 1,7-bisphosphate phosphatase	Putative uncharacterized protein	D,D-heptose 1,7-bisphosphate phosphatase	Histidinol phosphatase-related protein	D,D-heptose 1,7-bisphosphate phosphatase	CDS_ID OB1275 hypothetical protein	hypothetical protein	Histidinol-phosphatase	Putative phosphatase	D,D-heptose 1,7-bisphosphate phosphatase	Histidinol phosphatase	Residues 1 to 191 of 191 are 99 pct identical to residues 1 to 191 of a 191 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285894.1 putative phosphatase	D,D-heptose 1,7-bisphosphate phosphatase	D,D-heptose 1,7-bisphosphate phosphatase 1	Phosphatase, HAD superfamily	identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 hydrolase, putative	histidinol-phosphatase	putative dehydratase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	D,D-heptose 1,7-bisphosphate phosphatase	Putative uncharacterized protein	D-glycero-D-manno-heptose-1,7-bisphosphate 7-phosphatase	Similar to: HI0621.1, YAED_HAEIN conserved hypothetical protein	Histidinol phosphatase and related phosphatases HisB protein	D,D-heptose 1,7-bisphosphate phosphatase	Putative D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase	probable phosphatase	D-glycero-D-manno-heptose 1,7 bisphophate phosphatase	
HELPY00840	Putative uncharacterized protein	Uncharacterized conserved protein	Putative uncharacterized protein	identified by similarity to OMNI:HP0861 membrane protein, putative	Putative uncharacterized protein	Putative	Hypothetical protein	Putative membrane protein	integral membrane protein	Membrane protein, putative	Uncharacterized conserved membrane protein	conserved hypothetical protein	identified by similarity to GP:28806528 putative membrane protein	identified by match to protein family HMM PF02683 membrane protein, putative	membrane protein, putative	conserved hypothetical protein	membrane protein, putative	Best Blastp Hit: pir||D81161 conserved hypothetical protein NMB0759 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225989|gb|AAF41172.1| (AE002430) conserved hypothetical protein [Neisseria meningitidis MC58] conserved hypothetical protein	Evidence 4 : Homologs of previously reported genes of unknown function conserved protein of unknown function ; putative membrane protein	conserved hypothetical protein	Putative uncharacterized protein	membrane protein, putative	conserved hypothetical protein	uncharacterized conserved protein COG2836	conserved hypothetical protein	Hypothetical protein	Hypothetical protein	Hypothetical protein	hypothetical protein	
HELPY00841	Type III pantothenate kinase	Type III pantothenate kinase	Putative	Type III pantothenate kinase	hypothetical protein	transcriptional activator, putative, Baf family identified by match to protein family HMM TIGR00671	transcriptional regulators Function unclear	transcriptional activator, putative, Baf family identified by match to protein family HMM PF03309; match to protein family HMM TIGR00671	Transcriptional activator, Baf family	Transcriptional activator, Baf family	Putative transcriptional activator	Transcriptional activator, putative, Baf family	Transcriptional activator, putative, Baf family	Type III pantothenate kinase	Type III pantothenate kinase	Type III pantothenate kinase	Pantothenate kinase	Putative uncharacterized protein	Transcriptional activator, putative, Baf family	Transcriptional activator, putative, Baf family	Pantothenate kinase	Putative transcriptional regulator	
HELPY00842	Plasminogen-binding protein pgbB	hypothetical protein	conserved hypothetical protein (Q83BS1) Translation initiation factor IF-2 High confidence in function and specificity	L-seryl-tRNA(Sec) selenium transferase	Plasminogen-binding protein PgbB	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00843	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00844	Deoxyuridine 5'-triphosphate nucleotidohydrolase	deoxyuridine 5'triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Putative dUTPase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Putative dUTPase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	similar to AE007654-2|AAK79393.1| percent identity: 40 in 141 aa putative dUTP nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	deoxyuridine-triphosphatase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	SC2E9.09, dut, probable deoxyuridine 5'-triphosphate nucleotidohydrolase, len: 183 aa; similar to many eg. DUT_LYCES P32518 deoxyuridine 5'-triphosphate nucleotidohydrolase (169 aa), fasta scores; opt: 299 z-score: 371.4 E(): 1.7e-13, 37.9% identity in 140 aa overlap deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5 27-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	DUTP pyrophosphatase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 deoxyuridine 5'-triphosphate nucleotidohydrolase	deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'triphosphate nucleotidohydrolase protein	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Mb2716c, dut, len: 154 aa. Equivalent to Rv2697c, len: 154 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 154 aa overlap). Probable dut, deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), equivalent to Q49992|DUT_MYCLE|ML1028 DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE from Mycobacterium leprae (154 aa), FASTA scores: opt: 928, E(): 2.1e-51, (90.25% identity in 154 aa overlap). Also highly similar to others e.g. O54134|DUT_STRCO|SC2E9.09 from Streptomyces coelicolor (183 aa), FASTA scores: opt: 534, E(): 1.2e-26, (56.1% identity in 148 aa overlap); O66592|DUT_AQUAE|AQ_220 from Aquifex aeolicus (150 aa), FASTA scores: opt: 398, E(): 3.3e-18, (48.05% identity in 152 aa overlap); Q9X3X5|DUT_ZYMMO from Zymomonas mobilis (146 aa), FASTA scores: opt: 396, E(): 4.4e-18, (49.0% identity in 147 aa overlap); etc. BELONGS TO THE DUTPASE FAMILY. PUTATIVE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE DUT (DUTPASE) (DUTP PYROPHOSPHATASE) (DEOXYURIDINE 5'-TRIPHOSPHATASE) (DUTP DIPHOSPHATASE) (DEOXYURIDINE-TRIPHOSPHATASE)	
HELPY00845	Transcription elongation factor greA	transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor GreA	Transcription elongation factor	Transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor greA	Transcription elongation factor	Transcription elongation factor greA	CDS_ID OB2002 transcriptional elongation factor	Transcription elongation factor greA	transcriptional elongation factor	Transcription elongation factor	Transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor greA	Transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor greA	Transcription elongation factor greA	Transcription elongation factor greA	2SCK31.25c, probable transcription elongation factor, len: 165 aa; similar to SW:GREA_ECOLI (EMBL:X54718) Escherichia coli transcription elongation factor GreA (transcript cleavage factor), 158 aa; fasta scores: opt: 265 z-score: 326.5 E(): 1.2e-10; 34.0% identity in 153 aa overlap. Contains Pfam match to entry PF01272 GreA_GreB, Prokaryotic transcription elongation factor, GreA/GreB and match to Prosite entry PS00830 Prokaryotic transcription elongation factors signature 2 putative transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor greA	Transcription elongation factor greA	Transcription elongation factor greA	
HELPY00846	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Putative lipid A-disaccharide synthase	lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-a-disaccharide synthase	Lipid-a-disaccharide synthase protein	Residues 1 to 337 of 337 are 99 pct identical to residues 46 to 382 of a 382 aa protein from Escherichia coli K12 ref: NP_414724.1 tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	identified by similarity to SP:P10441; match to protein family HMM PF02684; match to protein family HMM TIGR00215 lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid A disaccharide synthetase	identified by similarity to GB:AAP77407.1; match to protein family HMM PF02684; match to protein family HMM TIGR00215 lipid-A-disaccharide synthetase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipid A disaccharide synthase	tetraacyldisaccharide-1-P	similar to Salmonella typhi CT18 lipid-A-disaccharide synthase lipid-A-disaccharide synthase	Lipid A disaccharide synthetase	Lipid-A-disaccharide synthase	
HELPY00847	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Specificity unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00848	Hydrogenase/urease nickel incorporation protein hypA	Probable hydrogenase nickel incorporation protein hypA	Hydrogenase/urease nickel incorporation protein hypA	identified by similarity to SP:P24189; match to protein family HMM PF01155; match to protein family HMM TIGR00100 hydrogenase nickel insertion protein HypA	Hydrogenase expression/synthesis, HypA	Hydrogenase expression/synthesis, HypA	Hydrogenase nickel insertion protein HypA	hydrogenase and urease maturation protein	hydrogenase nickel insertion protein HypA	Hydrogenase expression/synthesis, HypA	hydrogenase expression/synthesis, HypA identified by match to protein family HMM PF01155	hydrogenase expression/formation protein (O25539) Hydrogenase/urease nickel incorporation protein hypA High confidence in function and specificity	hydrogenase expression/synthesis, HypA PFAM: hydrogenase expression/synthesis, HypA KEGG: shm:Shewmr7_2165 hydrogenase nickel insertion protein HypA	hydrogenase nickel insertion protein HypA TIGRFAM: hydrogenase nickel insertion protein HypA PFAM: hydrogenase expression/synthesis, HypA KEGG: son:SO2089 hydrogenase expression/formation protein HypA	hydrogenase nickel insertion protein HypA identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100	hydrogenase nickel insertion protein HypA TIGRFAM: hydrogenase nickel insertion protein HypA PFAM: hydrogenase expression/synthesis, HypA KEGG: shm:Shewmr7_2165 hydrogenase nickel insertion protein HypA	Hydrogenase nickel insertion protein HypA	Hydrogenase expression/synthesis protein HypA	hydrogenase expression/formation protein HypA KEGG: son:SO2089 hydrogenase expression/formation protein HypA	Hydrogenase expression/synthesis protein HypA	Hydrogenase nickel insertion protein HypA	Hydrogenase nickel insertion protein HypA	Hydrogenase nickel insertion protein HypA	Hydrogenase nickel insertion protein HypA	TIGRFAM: hydrogenase nickel insertion protein HypA PFAM: hydrogenase expression/synthesis HypA KEGG: shw:Sputw3181_2177 hydrogenase nickel insertion protein HypA hydrogenase nickel insertion protein HypA	PFAM: hydrogenase expression/synthesis HypA KEGG: shw:Sputw3181_2177 hydrogenase nickel insertion protein HypA hydrogenase expression/synthesis HypA	KEGG: shw:Sputw3181_2177 hydrogenase nickel insertion protein HypA hydrogenase nickel insertion protein HypA	Hydrogenase nickel insertion protein HypA	Hydrogenase expression/formation protein HypA	
HELPY00849	Flagellar hook protein flgE	identified by similarity to SP:O07884; match to protein family HMM PF00460 flagellar hook protein	Flagellar hook protein FlgE	Flagellar hook protein flgE	identified by similarity to SP:P16322; match to protein family HMM PF00460; match to protein family HMM PF06429 flagellar hook protein FlgE	identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559 flagellar basal-body protein, putative	Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE	protein of unknown function DUF1078-like	Flagellar hook FlgE	Flagellar hook protein FlgE COG1749	conserved hypothetical protein	conserved hypothetical protein	flagellar hook protein	Flagellar hook protein FlgE	Ribonuclease III	flagellar hook protein FlgE identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489	protein of unknown function DUF1078 domain protein PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein KEGG: hch:HCH_04479 flagellar hook protein FlgE	flagellar hook protein FlgE	flagellar hook protein (Q9ZKY0) Flagellar hook protein flgE High confidence in function and specificity	flagellar hook protein FlgE identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489	Hypothetical protein	Putative Flagellar hook protein flgE	Putative Flagellar hook protein flgE	Flagellar basal body and hook protein FlgE	Putative uncharacterized protein	Putative uncharacterized protein	Flagellar hook protein	Flagellar basal body FlaE domain protein	Putative uncharacterized protein	
HELPY00850	CDP-diacylglycerol pyrophosphatase	Residues 65 to 315 of 315 are 98 pct identical to residues 1 to 251 of a 251 aa protein from Escherichia coli O157:H7 ref: NP_312870.1 CDP-diacylglycerol phosphotidylhydrolase	CDP-diacylglycerol pyrophosphatase	CDPdiacylglycerol diphosphatase	Probable CDP-diacylglycerol pyrophosphatase	Mb2311, cdh, len: 260 aa. Equivalent to Rv2289, len: 260 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 260 aa overlap). Probable cdh, CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26), similar to CDH_SALTY|P26219 cdp-diacylglycerol pyrophosphatase (251 aa), FASTA scores: opt: 395, E(): 5.9e-20, (33.5% identity in 221 aa overlap). Probable CDP-diacylglycerol pyrophosphatase Cdh (CDP-diacylglycerol diphosphatase) (CDP-diacylglycerol phosphatidylhydrolase)	CDP-diacylglycerol phosphotidylhydrolase	similar to Salmonella typhi Ty2 CDP-diglyceride hydrolase CDP-diglyceride hydrolase	CDP-diacylglycerol pyrophosphatase	CDP-diacylglycerol pyrophosphatase	CDP-diacylglycerol pyrophosphatase	CDP-diacylglycerol pyrophosphatase	CDP-diacylglycerol pyrophosphatase	Code: I; COG: COG2134 CDP-diacylglycerol phosphotidylhydrolase	Code: I; COG: COG2134 CDP-diacylglycerol phosphotidylhydrolase	CDP-diacylglycerol pyrophosphatase	CDP-diglyceride hydrolase	CDP-diacylglycerol pyrophosphatase precursor	CDP-diacylglycerol pyrophosphatase	CDP-diacylglycerol pyrophosphatase precursor	CDP-diacylglycerol phosphotidylhydrolase (P06282) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26) (CDP-diacylglycerol phosphatidylhydrolase) (CDP-diglyceride hydrolase) High confidence in function and specificity	CDP-diacylglycerol pyrophosphatase	CDP-diacylglycerol pyrophosphatase Cdh secreted protein involved in phospholipid biosynthesis [catalytic activity: CDP-diacylglycerol + H(2)O = CMP + phosphatidate]	Probable CDP-diacylglycerol pyrophosphatase cdh	CDP-diacylglycerol phosphotidylhydrolase Code: I; COG: COG2134	CDP-diacylglycerol pyrophosphatase precursor	CDP-diacylglycerol pyrophosphatase	CDP-diacylglycerol pyrophosphatase	CDP-diacylglycerol pyrophosphatase	
HELPY00851	Alkylphosphonate uptake protein	Alkylphosphonate utilization operon protein PhnA, putative	PHNA PROTEIN	Protein phnA	Putative uncharacterized protein	Protein phnA	similar to AF210249-9|AAG02350.1| percent identity: 57 in 121 aa conserved hypothetical protein	PhnA-like protein	Lin0389 protein	Alkylphosphonate uptakeprotein	Residues 1 to 112 of 112 are 99 pct identical to residues 1 to 112 of a 112 aa protein from Escherichia coli K12 gi: 1790547 orf, conserved hypothetical protein	Putative uncharacterized protein	Probable phna protein alkylphosphonate uptake	similar to unknown protein, truncated pseudo hypothetical protein	conserved gene alkylphosphonate uptake protein PhnA	similar to unknown protein hypothetical protein	identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 alkylphosphonate utilization operon protein PhnA	Alkylphosphonate uptake protein	conserved hypothetical protein, PhnA protein	identified by match to protein family HMM PF03831 PhnA domain protein	Alkilphosphonate uptake protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Alkylphosphonate uptake protein	putative alkylphosphonate uptake protein in phosphonate metabolism	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BR1463, hypothetical PhnA protein PhnA protein	Putative uncharacterized protein gbs0934	Putative uncharacterized protein	Putative ALKYLPHOSPHONATE UPTAKE PROTEIN	
HELPY00852	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00853	Putative uncharacterized protein	hypothetical protein	katA associated protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00854	Catalase	CDS_ID OB0633 catalase	similar to AX066107-1|CAC26293.1| percent identity: 88 in 516 aa putative catalase	SCF62.05, katA, catalase (EC 1.11.1.6) len: 487 aa.  Has been previously sequenced and characterised from Streptomyces coelicolor strain ATCC10147 TR:P77948 (EMBL; X96981) catalase (EC 1.11.1.6) (488 aa), fasta scores opt: 3300 z-score: 3768.6 E():0 98.2% identity in 488 aa overlap. Also similar to another proposed Streptomyces coelicolor catalase (EC 1.11.1.6) TR:Q9Z598 (EMBL; AL035478) SC2G5.25C (487 aa), fasta scores opt: 1704 z-score: 1896.1 E():0 53.8% identity in 483 aa overlap.  Contains Prosite hits to PS00437 Catalase proximal heme-ligand signature and to PS00438 Catalase proximal active site signature. Also contains a Pfam match to entry PF00199 catalase, Catalase. catalase (EC 1.11.1.6)	Catalase	Catalase	Catalase	Catalase	Catalase	identified by similarity to GP:7161885; match to protein family HMM PF00199 catalase	Catalase	Catalase	InterProMatches:IPR002226; Molecular Function: catalase activity (GO:0004096), Biological Process: electron transport (GO:0006118), Biological Process: response to oxidative stress (GO:0006979) vegetative catalase 1	Catalase	Catalase	Catalase	Catalase	Catalase	Ortholog of S. aureus MRSA252 (BX571856) SAR1344 catalase	Catalase	COG0753 catalase	KatA, catalase	Similar to: HI0928, CATA_HAEIN catalase	Identical to previously sequenced Bacteroides fragilis catalase KatA or KatB SWALL:CATA_BACFR (SWALL:P45737) (486 aa) fasta scores: E(): 2.2e-206, 100% id in 486 aa, and to Bacteroides thetaiotaomicron catalase BT1971 SWALL:AAO77078 (EMBL:AE016934) (488 aa) fasta scores: E(): 1.5e-192, 91.18% id in 488 aa, and to Porphyromonas gulae catalase hp2 Kat SWALL:Q8GRA4 (EMBL:AB083039) (485 aa) fasta scores: E(): 4.1e-160, 76.9% id in 485 aa catalase	Catalase	similar to catalase P; catP (GI:23344117) (Ajellomyces capsulatus) similar to catalase C; catC (GI:13378326) (Emericella nidulans); go_component: peroxisomal matrix [goid 0005782]; go_function: catalase activity [goid 0004096]; go_process: oxygen and reactive oxygen species metabolism [goid 0006800] catalase C	Catalase	identified by similarity to SP:O68146; match to protein family HMM PF00199 catalase	catalase	
HELPY00855	Iron-regulated outer membrane protein	Putative IRON-REGULATED OUTER MEMBRANE PROTEIN	Best Blastp Hit: possibly phase variable - 8T residue homopolymer repeat in the coding sequence (ON) COG1629 Outer membrane receptor proteins, mostly Fe; FetA ferric enterobactin receptor	iron-regulated outer membrane protein	TonB-dependent heme/hemoglobin receptor family protein TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein PFAM: TonB-dependent receptor; TonB-dependent receptor, plug KEGG: pat:Patl_3414 TonB-dependent receptor	iron-regulated outer membrane protein (P44523) Heme/hemopexin utilization protein C precursor Function unclear	TonB-dependent receptor precursor	iron-regulated outer membrane protein FrpB Code: P; COG: COG1629	TonB-dependent receptor precursor	Iron-regulated outer membrane protein	FetA	Iron-regulated outer membrane protein	Iron-regulated outer membrane protein	
HELPY00856	Crossover junction endodeoxyribonuclease ruvC	crossover junction endodeoxyribonuclease	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	similar to AF038651-3|AAK19838.1| percent identity: 84 in 218 aa crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	RuvC ; Holliday junction nuclease	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	SCL2.10c, ruvC, crossover junction endodeoxyribonuclease, len:188 aa; highly similar to SW:RUVC_MYCTU (EMBL:Z77724) Mycobacterium tuberculosis crossover junction endodeoxyribonuclease (EC 3.1.22.4) RuvC, 188 aa; fasta scores: opt: 704 z-score: 820.0 E(): 0; 60.7% identity in 178 aa overlap and to SW:RUVC_ECOLI (EMBL:X59551) Escherichia coli crossover junction endodeoxyribonuclease (EC 3.1.22.4) RuvC, 172 aa; fasta scores: opt: 381 z-score: 450.1 E(): 1.1e-17; 40.1% identity in 177 aa overlap. Contains match to Prosite entry PS01321 Crossover junction endodeoxyribonuclease ruvC signature crossover junction endodeoxyribonuclease	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Holliday junction nuclease ruvC	Putative holliday junction endodeoxyribonuclease protein	Residues 2 to 174 of 174 are 98 pct identical to residues 1 to 173 of a 173 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288300.1 Holliday junction nuclease; resolution of structures; repair	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	

HELPY00858	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	


HELPY00861	Holliday junction ATP-dependent DNA helicase ruvA	holliday junction DNA helicase	holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	CDS_ID OB2037 holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvA	similar to AF038651-4|AAK19839.1| percent identity: 76 in 204 aa holliday junction DNA-helicase RuvA	Holliday junction ATP-dependent DNA helicase ruvA	RuvA ; Holliday branch migration protein	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction DNA helicase ruvA	SCL2.09c, ruvA, holliday junction DNA helicase, len: 201 aa; highly similar to SW:RUVA_MYCTU (EMBL:Z77724) Mycobacterium tuberculosis holliday junction DNA helicase RuvA, 196 aa; fasta scores: opt: 549 z-score: 615.4 E(): 6.9e-27; 47.5% identity in 204 aa overlap and to SW:RUVA_ECOLI (EMBL:X07091) Escherichia coli holliday junction DNA helicase RuvA, 203 aa; fasta scores: opt: 308 z-score: 351.0 E(): 3.7e-12; 36.6% identity in 205 aa overlap. Contains Pfam match to entry PF01330 RuvA, Bacterial DNA recombination protein, RuvA holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	
HELPY00862	Putative uncharacterized protein	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00863	Virulence factor mviN homolog	MviN protein	Putative uncharacterized protein	virulence factor MviN-like protein	Integral membrane protein MviN	Virulence factor	Uncharacterized membrane protein, putative virulence factor MviN	Virulence factor mviN homolog	Uncharacterized membrane protein, putative virulence factor	Putative virulence factor	Virulence factor mviN homolog	Virulence factor mvin homolog	Cytoplasmic membrane protein	Residues 14 to 524 of 524 are 99 pct identical to residues 1 to 511 of a 511 aa protein from Escherichia coli O157:H7 ref: NP_309474.1 putative virulence factor	MviN protein	conserved gene virulence factor MviN	identified by similarity to SP:O25551; match to protein family HMM PF03023; match to protein family HMM TIGR01695 integral membrane protein MviN	Integral membrane protein MviN	Virulence factor MviN	Virulence factor-related protein	putative virulence factor	similar to Salmonella typhi CT18 virulence factor MviN virulence factor MviN	Similar to Chlamydia muridarum virulence factor MviN homologue or tc0913 SWALL:MVIN_CHLMU (SWALL:Q9PJB9) (536 aa) fasta scores: E(): 1.6e-153, 72.6% id in 533 aa. The Chlamydia trachomatis orthologue of this gene is expressed during natural infection. putative membrane protein	Putative uncharacterized protein	Virulence factor mviN homolog	Virulence factor mviN homolog	Putative inner membrane virulence factor protein	Virulence factor mviN protein	conserved hypothetical protein	
HELPY00864	Cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase 1	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase 1	Cysteinyl-tRNA synthetase	CDS_ID OB0099 cysteinyl-tRNA synthetase	similar to AL160331-8|CAB77329.1| percent identity: 55 in 468 aa conserved hypothetical protein	Cysteinyl-tRNA synthetase	cysteine-tRNA ligase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	SCD8A.08, probable cysteinyl-tRNA synthetase, len: 613 aa; C-terminal region highly similar to SW:SYC_ECOLI (EMBL:X56234) Escherichia coli cysteinyl-tRNA synthetase (EC 6.1.1.16) CysS, 461 aa; fasta scores: opt: 1267 z-score: 1248.2 E(): 0; 43.7% identity in 469 aa overlap.  Contains Pfam match to entry PF01406 tRNA-synt_1e, tRNA synthetases class I (C) and a N-terminal region degenerate 6x repeat putative cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	
HELPY00865	Vacuolating cytotoxin autotransporter	vacuolating cytotoxin A	Vacuolating cytotoxin A	Vacuolating cytotoxin A	Vacuolating cytotoxin VacA	
HELPY00866	Probable iron chelatin transport ATP-binding protein HP_0888	Probable iron chelatin transport ATP-binding protein JHP0821	iron(III) dicitrate ABC transporter, ATP-binding protein	iron(III) dicitrate transporter, ATP-binding protein (O05732) Probable iron chelatin transport ATP-binding protein HP0888 High confidence in function and specificity	ABC transporter related	Iron(III) dicitrate transporter, ATP-binding protein	Iron chelate ABC transporter, ATP-binding protein	Iron (III) dicitrate ABC transporter, ATP-binding protein	Iron(III) dicitrate ABC transporter FecE	ABC-type transport system, ATP binding protein; Iron(III) dicitrate ABC transporter, ATP-binding protein	
HELPY00867	Probable iron chelatin transport system permease protein HP_0889	Hemin transport system permease protein hmuU	Probable iron chelatin transport system permease protein JHP0822	ABC hemin transporter, permease subunit HmuU	iron(III) ABC transporter, permease protein	iron(III) ABC transporter permease protein similar to Bacillus spp. YvrB protein	ABC-type Fe3+-siderophore transport system, permease component COG0609	Code: P; COG: COG0609 putative permease of iron compound ABC transport system	Putative permease of iron compound ABC transport system	iron(III) dicitrate ABC transporter, permease protein	Hemin transport system permease protein HmuU precursor	Transport system permease protein	hypothetical protein similarity to COG0609 ABC-type cobalamin/Fe3+-siderophores transport systems, permease components(Evalue: 2E-70)	Putative permease of iron compound ABC transport system	ABC transporter, inner membrane subunit precursor	transport system permease protein PFAM: transport system permease protein; ABC-3 protein KEGG: mac:MA4605 iron(III) ABC transporter, permease protein	Hemin transport system permease protein HmuU precursor	iron(III) ABC transporter, permease protein (O05731) Probable iron chelatin transport system permease protein HP0889 High confidence in function and specificity	Hemin transport system permease protein HmuU precursor	putative permease of iron compound ABC transport system	Transport system permease protein	Transport system permease protein precursor	Transport system permease protein precursor	Transport system permease protein precursor	Predicted ABC transporter, permease component	Hemin ABC transporter, permease protein HmuU	ABC transporter, iron chelate uptake transporter (FeCT) family, permease protein	Putative uncharacterized protein	Transport system permease protein precursor	
HELPY00868	Probable short-chain type dehydrogenase/reductase vdlC	Putative oxidoreductase	Putative oxidoreductase	Oxidoreductase, short chain dehydrogenase/reductase family	Putative uncharacterized protein	Short-chain alcohol dehydrogenase family enzyme	Oxidoreductase	SCP1.43, possible short-chain oxidoreductase, len: 271aa; similar to many proposed oxidoreductase eg.  SW:P37959 (YUSZ_BACSU) hypothetical oxidoreductase from Bacillus subtilis (280 aa) fasta scores; opt: 441, z-score: 502.6, E(): 1.6e-20, 33.6% identity in 274 aa overlap. Contains Pfam match to entry PF00106 adh_short, short chain dehydrogenase and Prosite match to PS00687 Aldehyde dehydrogenases glutamic acid active site. putative short-chain oxidoreductase	Short-chain dehydrogenase	Residues 1 to 269 of 269 are 98 pct identical to residues 1 to 269 of a 269 aa protein from Escherichia coli K12 ref: NP_415026.1 putative oxidoreductase	Probable short-chain dehydrogenase	Short-chain dehydrogenase/reductase (SDR) superfamily	similar to oxidoreductase, short-chain dehydrogenase/reductase family hypothetical protein	similar to oxidoreductase, short-chain dehydrogenase/reductase family hypothetical protein	Short-chain dehydrogenase/oxidoreductase	oxidoreductase, short-chain dehydrogenase/reductase family	oxidoreductase, short chain dehydrogenase/reductase family	Oxidoreductase	Putative uncharacterized protein	similar to retinol dehydrogenase; Biological Process: metabolism (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491) Short-chain dehydrogenase/reductase YusZ	Oxidoreductase	IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR003560: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase putative oxidoreductase	similar to Salmonella typhi CT18 hypothetical oxidoreductase hypothetical oxidoreductase	Probable short-chain type dehydrogenase/reductase vdlC	Probable short-chain dehydrogenase	short chain dehydrogenase	Probable oxidoreductase Conserved hypothetical protein	oxidoreductase, short chain dehydrogenase/reductase family	
HELPY00869	Protein vdlD	Acyl-CoA hydrolase	SCBAC19G2.04, possible acyl-CoA hydrolase, len: 197 aa: similar to many e.g. SW:Q64559 (CTE2_RAT) rat brain cytosolic acyl-coenzyme A thioester hydrolase (338 aa) fasta scores; opt: 353, Z-score: 394.1, 34.973% identity (35.754% ungapped) in 183 aa overlap and TR:Q9I0E9 (EMBL:AE004697) hypothetical protein from Pseudomonas aeruginosa (166 aa) fasta scores; opt: 391, Z-score: 440.1, 42.949% identity (44.667% ungapped) in 156 aa overlap. Contains Pfam match to entry PF01662 Acyl-CoA_hydro, Cytosolic long-chain acyl-CoA thioester hydrolase. putative acyl-CoA hydrolase	Acyl-CoA hydrolase	Uncharacterized acyl-CoA thioester hydrolase CT_535	Putative acyl-coa hydrolase or thioesterase ; protein	Probable acy-CoA thioester hydrolase-related protein	Similar to Chlamydia pneumoniae putative acyl-coA thioester hydrolase cpn0654 or cp0093 or cpj0654 SWALL:Y654_CHLPN (SWALL:Q9Z7Q0) (155 aa) fasta scores: E(): 3.9e-58, 89.61% id in 154 aa, and to Bacillus subtilis putative acyl-coA thioester hydrolase YkhA SWALL:YKHA_BACSU (SWALL:P49851) (179 aa) fasta scores: E(): 2.2e-15, 37.01% id in 154 aa putative acyl-coA thioester hydrolase	Putative uncharacterized protein	Protein vdlD	Putative acyl-CoA hydrolase	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative acyl-CoA thioester hydrolase	acyl-CoA hydrolase	Long-chain acyl-CoA thioester hydrolase family protein	conserved hypothetical protein, putative thioesterase	identified by similarity to GP:28809765; match to protein family HMM PF03061 thioesterase family protein	acyl-CoA hydrolase	identified by match to protein family HMM PF03061 cytosolic long-chain acyl-CoA thioester hydrolase family protein	identified by match to protein family HMM PF03061 cytosolic long-chain acyl-CoA thioester hydrolase family protein	Thioesterase superfamily	Thioesterase superfamily	Thioesterase superfamily	Best Blastp Hit: pir||G81079 acyl CoA thioester hydrolase family protein NMB1482 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226722|gb|AAF41838.1| (AE002497) acyl CoA thioester hydrolase family protein [Neisseria meningitidis MC58] COG1607 Acyl-CoA hydrolase putative acyl-CoA hydrolase	acyl-CoA thioester hydrolase (EC 3.1.2.-) 2	Putative acyl-CoA hydrolase	Thioesterase superfamily	putative acyl-CoA thioester hydrolase	thioesterase superfamily	thioesterase superfamily	
HELPY00870	Putative uncharacterized protein	Putative	Putative cytoplasmic protein	Code: S; COG: COG3041 conserved hypothetical protein	Code: S; COG: COG3041; orf conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Predicted toxin of the YafQ-DinJ toxin-antitoxin system	Putative uncharacterized protein	Addiction module toxin, RelE/StbE family	Addiction module toxin, RelE/StbE family	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Toxin of the YafQ-DinJ toxin-antitoxin system	Toxin of the YafQ-DinJ toxin-antitoxin system	YafQ protein	Putative uncharacterized protein	Predicted toxin of the YafQ-DinJ toxin-antitoxin system	Addiction module antitoxin/putative RelE toxin- like protein, plasmid stabilization system	DNA damage inducible protein	predicted toxin of the YafQ-DinJ toxin-antitoxin system	Addiction module toxin, RelE/StbE family	
HELPY00871	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00872	Putative uncharacterized protein	Putative	Plasmid stabilization system	hypothetical protein	PZ12b	conserved hypothetical protein homologous to hypothetical prophage protein [Bartonella henselae str. Houston-1];,homologous to hypothetical protein yafQ of E. coli (Q47149),InterPro; Conserved hypothetical protein 53 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Addiction module toxin, RelE/StbE family	Addiction module antitoxin/putative RelE toxin- like protein, plasmid stabilization system	Addiction module toxin, RelE/StbE family	Putative uncharacterized protein	

HELPY00874	Outer membrane protein	outer membrane protein	Outer membrane protein	Outer membrane protein	
HELPY00875	Putative uncharacterized protein	hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00876	Hydrogenase expression/formation protein	Pleiotrophic effects on 3 hydrogenase isozymes	Hydrogenase expression/formation protein hypD	Hydrogenase expression-formation factor	Hydrogenase maturation factor	Residues 1 to 373 of 373 are 99 pct identical to residues 1 to 373 of a 373 aa protein from Escherichia coli K12 ref: NP_417209.1 pleiotrophic effects on 3 hydrogenase isozymes	hydrogenase expression/formation protein hypD	Hydrogenase expression/formation protein HypD	conserved gene hydrogenase expression/formation protein HypD	Hydrogenase expression/formation protein HypD	hydrogenase isoenzymes formation protein HypD	identified by similarity to SP:P24192; match to protein family HMM PF01924; match to protein family HMM TIGR00075 hydrogenase expression/formation protein HypD	IPR002780: Hydrogenase formation HypD protein putative hydrogenase expression/formation protein	similar to Salmonella typhi CT18 hydrogenase isoenzymes formation protein HypD hydrogenase isoenzymes formation protein HypD	Hydrogenase isoenzymes formation protein	Hydrogenase expression/formation protein	Hydrogenase maturation factor HypD protein	Putative hydrogenase expression/formation protein	[NiFe] hydrogenase metallocenter assembly protein HypD	HypD hydrogenase expression/formation protein	identified by similarity to SP:P24192; match to protein family HMM PF01924; match to protein family HMM TIGR00075 hydrogenase expression/formation protein HypD	Hydrogenase formation HypD protein	Code: O; COG: COG0409 pleiotrophic effects on 3 hydrogenase isozymes	hydrogenase expression/formation protein HypD	identified by similarity to SP:P24192; match to protein family HMM PF01924 hydrogenase expression/formation protein HypD	hydrogenase expression/formation protein	hydrogenase isoenzymes formation protein HypD	pleiotrophic effects on 3 hydrogenase isozymes; Code: O; COG: COG0409 HypD	Hydrogenase formation HypD protein	
HELPY00877	Hydrogenase expression/formation protein	Hydrogenase isoenzymes formation protein hypC	Putative hypC	Hydrogenase expression factor	Hydrogenase maturation factor	Residues 1 to 90 of 90 are 100 pct identical to residues 1 to 90 of a 90 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289278.1 pleiotrophic effects on 3 hydrogenase isozymes	hydrogenase expression/formation protein HypC	Hydrogenase expression/formation protein HypC	conserved gene hydrogenase expression/formation protein HypC	Hydrogenase expression/formation protein HypC	identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074 hydrogenase assembly chaperone HypC/HupF	IPR001109: Hydrogenase expression/formation protein (HUPF/HYPC) putative hydrogenase expression/formation protein	similar to Salmonella typhi CT18 hydrogenase isoenzymes formation protein HypC hydrogenase isoenzymes formation protein HypC	Hydrogenase expression/formation protein hypC	Hydrogenase expression/formation protein	Putative hydrogenase expression/formation protein	HypC hydrogenase expression/formation protein	identified by similarity to GP:15430693; match to protein family HMM TIGR00074 hydrogenase assembly chaperone HypC/HupF	Hydrogenase expression/formation protein (HUPF/HYPC)	Code: O; COG: COG0298 pleiotrophic effects on 3 hydrogenase isozymes	hydrogenase assembly chaperone HypC	hydrogenase expression/formation protein	pleiotrophic effects on 3 hydrogenase isozymes; Code: O; COG: COG0298 HypC	Hydrogenase expression/formation protein (HUPF/HYPC)	Hydrogenase expression/formation protein (HUPF/HYPC)	hydrogenase assembly chaperone hypC/hupF	hypothetical protein related to hydrogenase maturation/formation protein HypC	hydrogenase assembly chaperone hypC/hupF	hydrogenase assembly chaperone hypC/hupF	
HELPY00878	Hydrogenase/urease nickel incorporation protein hypB	Hydrogenase expression/formation protein hypB	Residues 1 to 290 of 290 are 99 pct identical to residues 1 to 290 of a 290 aa protein from Escherichia coli K12 ref: NP_417207.1 guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3	hydrogenase nickel incorporation protein HypB	conserved gene hydrogenase expression/formation protein HypB	hydrogenase nickel incorporation protein HypB	hydrogenase isoenzymes formation protein HypB	identified by similarity to SP:P24190; match to protein family HMM PF01495; match to protein family HMM TIGR00073 hydrogenase accessory protein HypB	IPR002894: HypB/UreG, nucleotide-binding; IPR004392: Hydrogenase accessory protein HypB hydrogenase-3 accessory protein, assembly of metallocenter	similar to Salmonella typhi CT18 hydrogenase isoenzymes formation protein HypB hydrogenase isoenzymes formation protein HypB	Hydrogenase/urease nickel incorporation protein hypB	Hydrogenase/urease nickel incorporation protein hypB	Hydrogenase accessory protein HypB	Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase HypB protein	Hydrogenase-3 accessory protein	[NiFe] hydrogenase nickel incorporation- associated protein HypB, GTPase	functions as nickel donor for large subunit of hydrogenase 3; Code: OK; COG: COG0378 guanine-nucleotide binding protein	identified by similarity to SP:P24190; match to protein family HMM PF02492; match to protein family HMM TIGR00073 hydrogenase accessory protein HypB	Citation: Colbeau,A. et al. Mol. Microbiol. 8:15-29.  1993. Organization of the genes necessary for hydrogenase expression in R. capsulatu NI2+-binding GTPase protein HypB	functions as nickel donor for large subunit of hydrogenase 3; Code: OK; COG: COG0378 guanine-nucleotide binding protein	hydrogenase accessory protein HypB	Hydrogenase accessory protein HypB	Hydrogenase accessory protein HypB	hydrogenase accessory protein HypB, interruption-C identified by similarity to SP:Q43949; match to protein family HMM PF02492; match to protein family HMM TIGR00073	hydrogenase accessory protein HypB	HypB putative hydrogenase nickel incorporation protein HypB; COG0378, pfam01495	hydrogenase accessory protein HypB	Hydrogenase accessory protein HypB	Hydrogenase accessory protein HypB	
HELPY00880	Putative uncharacterized protein	Putative	hypothetical protein	RmlC-like cupin family protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	






HELPY00882	Putative uncharacterized protein	identified by Glimmer2; putative hypothetical protein	Putative	Flagellar hook-length control protein	transcript_id=ENSDNOT00000007307	transcript_id=ENSGACT00000015116	Flagellar hook-length control protein	hypothetical protein	transcript_id=ENSFCAT00000000678	transcript_id=ENSEEUT00000006416	flagellar hook-length control protein	conserved hypothetical protein hypothetical protein	hypothetical protein identified by Glimmer2; putative	Magnaporthe grisea hypothetical protein	Putative uncharacterized protein	hypothetical protein	jgi|Lacbi1|317216|eu2.Lbscf0007g03440	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Neurofilament heavy polypeptide (NF-H)(Neurofilament triplet H protein)(200 kDa neurofilament protein) [Source:UniProtKB/Swiss-Prot;Acc:P12036]	jgi|Monbr1|34734|estExt_fgenesh2_pg.C_480006	Putative uncharacterized protein	Putative uncharacterized protein	Putative flagellar control protein	hypothetical protein	jgi|Emihu1|314476|fgenesh_newKGs_pm.181__8	
HELPY00883	Hook assembly protein, flagella	identified by similarity to OMNI:TM0673; match to protein family HMM PF03963 flagellar hook assembly protein	Flagellar hook assembly protein FlgD	Putative FLAGELLAR BIOSYNTHESIS PROTEIN	basal-body rod modification protein FlgD	Flagellar hook capping protein	basal-body rod modification protein FlgD identified by match to protein family HMM PF03963	Flagellar hook capping protein	hook assembly protein, flagella	flagellar hook assembly protein identified by match to protein family HMM PF03963	flagellar hook assembly protein (P16321) Basal-body rod modification protein flgD High confidence in function and specificity	flagellar hook capping protein PFAM: flagellar hook capping protein KEGG: gme:Gmet_3105 flagellar hook capping protein	flagellar Basal-body rod modification protein FlgD Evidence 2b : Function of strongly homologous gene; Product type f : factor	flagellar hook assembly protein identified by match to protein family HMM PF03963	Putative flagellar hook assembly protein	Flagellar hook capping protein	Basal-body rod modification protein FlgD	Flagellar hook capping protein	Flagellar hook assembly protein	Flagellar hook capping protein	Flagellar hook assembly protein	Flagellar hook capping protein	Basal-body rod modification protein FlgD	Flagellar hook capping protein	Flagellar hook capping protein precursor	Flagellar basal body rod modification protein	Flagellar hook capping protein	Flagellar basal body rod modification protein	Flagellar basal-body rod protein FlgD	
HELPY00884	Flagellar hook	Putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN	Flagellar basal body rod protein, FlaE	flagellar basal body FlaE	Hypothetical protein	flagellar hook protein	Flagellar hook protein FlgE	conserved hypothetical protein	protein of unknown function DUF1078-like	flagellar hook protein	flagella basal body rod domain protein	flagellar hook protein (P50610) Flagellar hook protein flgE Function unclear	flagellar basal body FlaE domain protein PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein KEGG: rpb:RPB_3817 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative uncharacterized protein precursor	Putative uncharacterized protein	Flagellar hook protein FlgE	Flagellar hook protein FlgE	Flagellar hook protein	Flagellar hook protein FlgE	Putative uncharacterized protein	Flagellar hook protein	Flagellar hook protein FlgE	Fagellar hook-basal body protein	
HELPY00885	Putative uncharacterized protein	restriction endonuclease	putative restriction endonuclease hypothetical protein	Putative restriction endonuclease	Putative restriction endonuclease	Restriction endonuclease	Type II R-M system restriction endonuclease	
HELPY00886	Adenine specific DNA methyltransferase	TYPE II DNA MODIFICATION ENZYME	N6 adenine-specific DNA methyltransferase, N12 class	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG1002 conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0827 conserved hypothetical protein	N6 adenine-specific DNA methyltransferase, N12 class	adenine specific DNA methyltransferase	Site specific DNA-methyltransferase (P43423) Modification methylase BseCI (EC 2.1.1.72) (Adenine-specific methyltransferase BseCI) (M.BseCI) High confidence in function and specificity	modification methyltransferase Modification methylase TaqI (EC 2.1.1.72) (Adenine-specific methyltransferase TaqI) (M.TaqI). THIS METHYLASE RECOGNIZES THE DOUBLE-STRANDED SEQUENCE TCGA CAUSES SPECIFIC METHYLATION ON A-4 ON BOTH STRANDS AND PROTECTS THE DNA FROM CLEAVAGE BY THE TAQI ENDONUCLEASE.  InterPro: N6 adenine-specific DNA methyltransferase N12 class Family membership	Type II DNA modification enzyme	Site specific DNA-methyltransferase	Adenine specific DNA methyltransferase	Modification methylase	Adenine specific DNA methyltransferase	Modification methyltransferase	
HELPY00887	Rep helicase, single-stranded DNA-dependent ATPase	ATP-dependent DNA helicase	identified by similarity to SP:P03018; match to protein family HMM PF00580 ATP-dependent DNA helicase, putative	UvrD/REP helicase; Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP-dependent DNA helicase activity (GO:0004003), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281) putative ATP-dependent DNA helicase YjcD	ATP-dependent DNA helicase, UvrD/REP family	ATP-dependent DNA helicase	Putative ATP-DEPENDENT HELICASE	Probable DNA helicase II homolog (EC 3.6.1.-).,Has both ATPase and helicase activities. Unwinds DNA duplexes with 3 to 5 polarity with respect to the bound strand and initiates unwinding most effectively when a single- stranded region is present. Involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair (By similarity). putative ATP-dependent DNA helicase II	superfamily I DNA and RNA helicases	UvrD/REP helicase	rep helicase, single-stranded DNA-dependent ATPase	putative ATP-dependent DNA helicase PcrA identified by similarity to SP:Q53727; match to protein family HMM PF00580	UvrD/REP helicase identified by match to protein family HMM PF00580	ATP-dependent DNA helicase High confidence in function and specificity	UvrD/REP helicase	UvrD/REP helicase PFAM: UvrD/REP helicase KEGG: sty:HCM1.107 putative DNA helicase	putative ATP-dependent DNA helicase	ATP-dependent DNA helicase, putative identified by match to protein family HMM PF00580	UvrD/REP helicase	UvrD/REP helicase	ATP-dependent DNA helicase, UvrD/REP family	ATP-dependent DNA helicase, UvrD/REP family	Putative ATP-dependent DNA helicase	UvrD/REP helicase	Putative ATP-dependent DNA helicase	ATP-dependent DNA helicase	ATP-dependent DNA helicase, UvrD/Rep family	UvrD/REP helicase	YjcD	

HELPY00888	Outer membrane protein	outer membrane protein HopC	outer membrane protein 21 hypothetical protein	Outer membrane protein HopC	Outer membrane protein	Outer membrane protein HopC/AlpA	
HELPY00889	Outer membrane protein	outer membrane protein HopB	outer membrane protein 22 hypothetical protein	Outer membrane protein HopB	Outer membrane protein	Outer membrane protein HopB/AlpB	
HELPY00890	Putative uncharacterized protein	outer membrane protein HopG	hof-family outer membrane protein hypothetical protein	Outer membrane protein	Outer membrane protein HofG	
HELPY00891	Iron-regulated outer membrane protein	iron-regulated outer membrane protein	iron-regulated outer membrane protein Function unclear	Iron-regulated outer membrane protein	Iron-regulated outer membrane protein	Iron-regulated outer membrane protein	

HELPY00894	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00895	Carbamoyl-phosphate synthase large chain	carbamoyl phosphate synthetase large chain	carbamoyl-phosphate synthase(arginine-specific) large chain	Putative carbamoyl-phosphate synthase large subunit	Carbamoyl-phosphate synthase, large subunit	Carbamoyl-phosphate synthase large chain	Carbamoyl-phosphate synthase large chain	Carbamoyl-phosphate synthase large chain	Carbamoyl-phosphate synthase large chain	CDS_ID OB1080 arginine specific carbamoyl-phosphate synthase large chain	similar to AX064717-1|CAC25598.1| percent identity: 90 in 1113 aa putative carbamoyl-phosphate synthase large chain	carbamoyl-phosphate synthase large subunit	Carbamoyl-phosphate synthase large chain	Carbamoyl-phosphate synthase large subunit	Carbamoylphosphate synthase, large chain	Carbamoyl-phosphate synthase arginine-specific large chain	Carbamoyl-phosphate synthase large chain	SC9C5.07c, pyrA, carbamoylphosphate synthetase large chain, len: 1102 aa; similar to SW:CARB_ECOLI (EMBL:V01500) Escherichia coli carbamoyl-phosphate synthase large chain (EC 6.3.5.5) CarB or PyrA, 1072 aa; fasta scores: opt: 3383 z-score: 3699.6 E(): 0; 55.0% identity in 1102 aa overlap. Contains 3x Pfam matches to entry PF00289 CPSase_L_chain, Carbamoyl-phosphate synthase (CPSase) and matches to Prosite entries 2x PS00866 Carbamoyl-phosphate synthase subdomain signature 1 and 2x PS00867 Carbamoyl-phosphate synthase subdomain signature carbamoylphosphate synthetase large chain	Carbamoyl-phosphate synthase large chain	Carbamoyl-phosphate synthase large chain	Carbamoyl-phosphate synthase large chain	Carbamoyl-phosphate synthase large chain	Residues 1 to 1073 of 1073 are 100 pct identical to residues 1 to 1073 of a 1073 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285727.1 carbamoyl-phosphate synthase large subunit	Carbamoyl-phosphate synthase large chain	Carbamoyl-phosphate synthase:Methylglyoxal synthase-like domain	CarB protein	Carbamoyl-phosphate synthase large chain	Carbamoylphosphate synthetase large subunit	carbamoyl-phosphate synthase large subunit	
HELPY00896	Uncharacterized protein HP_0920	hypothetical conserved protein	Membrane protein, putative	Putative TEGT family carrier/transport protein	CDS_ID OB2689 hypothetical protein	Integral membrane protein	Lin2310 protein	Uncharacterized protein CT_819	Uncharacterized protein family UPF0005	YccA protein	Probable transmembrane protein	Predicted membrane protein, similar to transporter hypothetical protein	conserved gene carrier/transport protein	Predicted membrane protein, similar to transporter hypothetical protein	Probable membrane protein	identified by similarity to SP:O25578; match to protein family HMM PF01027 membrane protein, putative	IPR006213: Bax inhibitor 1 putative TEGT family carrier/transport protein	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Similar to Yersinia pestis putative membrane protein YPO1163 or Y3018 SWALL:Q8ZGW1 (EMBL:AJ414146) (236 aa) fasta scores: E(): 3.4e-16, 33.63% id in 223 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein YbhL or B0786 or C0868 SWALL:YBHL_ECOLI (SWALL:P75768) (234 aa) fasta scores: E(): 3.7e-14, 32.43% id in 222 aa putative membrane protein	Putative uncharacterized protein	Hypothetical protein JHP0854	Putative integral membrane protein	identified by match to protein family HMM PF01027 membrane protein, putative	Putative uncharacterized protein	SecY stabilizing membrane protein	Similar to: HI0044, YCCA_HAEIN conserved hypothetical FtsH-interacting integral membrane protein	LM24.119, predicted protein, len = 313 aa, possibly putative bax inhibitor-1 (inhibitor of apoptosis); predicted pI = 10.2258; contains Pfam match to entry PF01027, Uncharacterized protein family UPF0005; contains 6 predicted TM helix regions; reasonable similarity to AAM14083, putative bax inhibitor-1 (247 aa, Arabidopsis thaliana, EMBL: AY091134, AAM14083); Fasta scores: E():2.9e-14, 35.556% identity (37.915% ungapped) in 225 aa overlap, (aa 93-308 of LM24.119, aa 12-231 of AAM14083) hypothetical protein, conserved	Integral membrane protein, interacts with FtsH Hypothetical protein	Membrane protein, putative	
HELPY00897	Glyceraldehyde-3-phosphate dehydrogenase	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)	Glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase A	CDS_ID OB2438 glyceraldehyde-3-phosphate dehydrogenase	similar to X59403-1|CAA42045.1| percent identity: 91 in 335 aa glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde 3-phosphate dehydrogenase	Gap protein	Glyceraldehyde-3-phosphate dehydrogenase	glyceraldehyde 3-phosphate dehydrogenase	identified by similarity to EGAD:22254; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase 1	Glyceraldehyde-3-phosphate dehydrogenase	Mb1471, gap, len: 339 aa. Equivalent to Rv1436, len: 339 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 339 aa overlap). Probable gap, Glyceraldehyde 3-phosphate dehydrogenase (EC 1.2.1.12), highly similar to many e.g. G3P_MYCLE|P46713 Mycobacterium leprae (339 aa), FASTA scores: opt: 1933, E():0, (89.1% identity in 339 aa overlap). Contains PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.  BELONGS TO THE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FAMILY. PROBABLE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE GAP (GAPDH)	InterProMatches:IPR006424; catabolic enzyme, Biological Process: glucose metabolism (GO:0006006), Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) glyceraldehyde-3-phosphate dehydrogenase	glyceraldehyde-3-phosphate dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde 3-phosphate dehydrogenase	IPR000173: Glyceraldehyde 3-phosphate dehydrogenase; IPR006424: Glyceraldehyde-3-phosphate dehydrogenase, type I; IPR006436: Glyceraldehyde-3-phosphate dehydrogenase, type II glyceraldehyde-3-phosphate dehydrogenase A	similar to Salmonella typhi CT18 glyceraldehyde 3-phosphate dehydrogenase A glyceraldehyde 3-phosphate dehydrogenase A	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 glyceraldehyde-3-phosphate dehydrogenase, type I	COG0057 glyceraldehyde 3-phosphate dehydrogenase	
HELPY00898	Toxin-like outer membrane protein	Haemagluttinin motif protein	vacuolating cytotoxin (VacA)-like protein	Haemagluttinin domain protein	Vacuolating cytotoxin (VacA)-like protein	Truncated protein, similar to cell wall surface anchor family protein	Vacuolating cytotoxin VacA-like protein	

HELPY00900	Probable tautomerase HP_0924	Similar to putative 4-oxalocrotonate tautomerase	identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013 4-oxalocrotonate tautomerase family protein	4-oxalocrotonate tautomerase tautomerase	Probable tautomerase JHP0858	Putative tautomerase	identified by similarity to SP:Q01468; match to protein family HMM PF01361; match to protein family HMM TIGR00013 4-oxalocrotonate tautomerase	4-oxalocrotonate tautomerase	4-oxalocrotonate tautomerase	Best Blastp Hit: pir||H81078 4-oxalocrotonate tautomerase, probable NMB1474 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226715|gb|AAF41831.1| (AE002497) 4-oxalocrotonate tautomerase, putative [Neisseria meningitidis MC58] >gi|7380326|emb|CAB84913.1| (AL162756) putative tautomerase [Neisseria meningitidis] COG1942 Uncharacterized protein conserved hypothetical protein	uncharacterized protein 4-oxalocrotonate tautomerase-like protein; COG1942	4-oxalocrotonate tautomerase family enzyme TIGRFAM: 4-oxalocrotonate tautomerase family enzyme: (1.3e-16) PFAM: 4-oxalocrotonate tautomerase: (4.1e-18) KEGG: plu:plu0307 hypothetical protein, ev=5e-16, 54% identity	4-oxalocrotonate tautomerase family enzyme	4-oxalocrotonate tautomerase	4-oxalocrotonate tautomerase family enzyme	4-oxalocrotonate tautomerase family enzyme	conserved domain protein identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013	4-oxalocrotonate tautomerase family enzyme TIGRFAM: 4-oxalocrotonate tautomerase family enzyme PFAM: 4-oxalocrotonate tautomerase KEGG: gsu:GSU1550 4-oxalocrotonate tautomerase family protein	4-oxalocrotonate tautomerase family enzyme TIGRFAM: 4-oxalocrotonate tautomerase family enzyme PFAM: 4-oxalocrotonate tautomerase KEGG: eca:ECA0844 putative tautomerase	tautomerase, putative	putative tautomerase Probable tautomerase Conserved hypothetical protein	Putative tautomerase	putative 4-oxalocrotonate tautomerase Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	conserved domain protein identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013	4-oxalocrotonate tautomerase family enzyme	4-oxalocrotonate tautomerase family enzyme TIGRFAM: 4-oxalocrotonate tautomerase family enzyme PFAM: 4-oxalocrotonate tautomerase KEGG: gsu:GSU1550 4-oxalocrotonate tautomerase family protein	Putative tautomerase K2	Putative tautomerase	4-oxalocrotonate tautomerase family protein	
HELPY00901	Recombination protein recR	recombination protein	DNA repair and genetic recombination protein	Recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination protein recR	Recombinational DNA repair protein RecR	Recombination protein recR	Recombination protein	Recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination protein recR	CDS_ID OB0031 recombination protein	Recombination protein recR	similar to D90916-13|BAA18639.1| percent identity: 44 in 218 aa putative recombination protein	Recombination protein recR	recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination protein	Recombination protein recR	SC66T3.29c, recR, probable recomination protein, len: 199 aa; highly similar to many e.g. SW:RECR_BACSU (EMBL:X17014), recR, Bacillus subtilis recomination protein (198 aa), fasta scores; opt: 794 z-score: 939.4 E(): 0, 56.6% identity in 196 aa overlap putative recomination protein	
HELPY00902	tRNA pseudouridine synthase D	Residues 1 to 349 of 349 are 99 pct identical to residues 1 to 349 of a 349 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289294.1 putative hydrogenase subunit	tRNA pseudouridine synthase D	tRNA pseudouridine synthase D	similar to conserved hypothetical proteins hypothetical protein	conserved gene hydrogenase	similar to conserved hypothetical proteins hypothetical protein	identified by similarity to SP:Q57261; match to protein family HMM PF01142; match to protein family HMM TIGR00094 tRNA pseudouridine synthase D, putative	tRNA pseudouridine synthase D	IPR001656: Protein of unknown function UPF0024 paral putative hydrogenase subunit	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	tRNA pseudouridine synthase D	tRNA pseudouridine synthase D	tRNA pseudouridine synthase D	pseudouridylate synthase; Uracil hydrolyase; Similar to: HI0701, TRUD_HAEIN tRNA pseudouridine synthase D	Uncharacterized ACR Hypothetical protein	tRNA pseudouridine synthase D	Code: S; COG: COG0585 putative hydrogenase subunit	Pseudouridylate synthase	Code: S; COG: COG0585 putative hydrogenase subunit	tRNA pseudouridine synthase D	Code: S; COG: COG0585 putative hydrogenase subunit	Pseudouridylate synthase PFAM: tRNA pseudouridine synthase D, TruD: (6.2e-137) KEGG: dra:DR1991 tRNA pseudouridine synthase D, ev=1e-144, 75% identity	tRNA pseudouridine synthase D	hypothetical protein	Hypothetical protein	Pseudouridylate synthase	Pseudouridylate synthase	tRNA pseudouridine synthase D	
HELPY00903	Probable protease htpX homolog	Probable protease htpX homolog	Heat shock protein HtpX, putative	Probable protease htpX homolog	Putative uncharacterized protein	Probable protease htpX-like protein	Endopeptidase	Putative heat shock protein	SCD39.09, possible peptidase, len: 287 aa; similar to SW:HTPX_MYCTU (EMBL:Z95558) Mycobacterium tuberculosis probable protease HtpX homolog (EC 3.4.24.-), 286 aa; fasta scores: opt: 1208 z-score: 1421.7 E(): 0; 65.4% identity in 283 aa overlap. Contains Pfam match to entry PF01435 Peptidase_M48, Peptidase family M48 and match to Prosite entry PS00142 Neutral zinc metallopeptidases, zinc-binding region signature. Also contains possible hydrophobic membrane spanning regions putative peptidase	Probable protease htpX homolog	Probable protease htpX homolog	zinc-dependent protease HtpX homolog, M48 family	Probable protease htpX homolog	Highly similar to C. burnetii heat shock protein HtpX hypothetical protein	conserved gene heat shock protein HtpX	Highly similar to C. burnetii heat shock protein HtpX hypothetical protein	Probable protease htpX homolog	Heat shock protein	HtpX	Probable protease htpX homolog	Mb0578, htpX, len: 286 aa. Equivalent to Rv0563, len: 286 aa (alternative start at position 654006), from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 286 aa overlap). Probable htpX, protease heat shock protein X (EC 3.4.24.-) (transmembrane protein), equivalent to NP_302484.1|NC_002677 putative peptidase from Mycobacterium leprae (287 aa). Also highly similar to others e.g. CAC08262.1|AL392146 putative peptidase from Streptomyces coelicolor (287 aa); NP_387431.1|NC_003047 PUTATIVE PROTEASE TRANSMEMBRANE PROTEIN from Sinorhizobium meliloti (319 aa); NP_105051.1|NC_002678 heat shock protein (htpX) from Mesorhizobium loti (336 aa); NP_248692.1|NC_000909|U67608|MJU67608_8 heat shock protein HtpX, possibly protease (htpX) from Methanococcus jannaschii (284 aa), FASTA scores: opt: 660, E(): 0, (46.5 identity in 245 aa overlap). Continuation of MTCY25D10.42.  TBparse score is 0.887. BELONGS TO PEPTIDASE FAMILY M48 (ZINC METALLOPROTEASE). COFACTOR: Zinc. PROBABLE PROTEASE TRANSMEMBRANE PROTEIN HEAT SHOCK PROTEIN HTPX	Heat shock protein HtpX	Probable protease htpX homolog	Probable protease htpX homolog	best blastp match gb|AAK33387.1| (AE006498) putative heat shock protein [Streptococcus pyogenes M1 GAS] putative heat shock protein	Putative Heat shock protein	Similar to Streptococcus gordonii Challis probable protease HtpX homolog SWALL:HTPX_STRGC (SWALL:O30795) (297 aa) fasta scores: E(): 1.1e-29, 34.31% id in 271 aa, and to Bacteroides thetaiotaomicron putative protease BT1199 SWALL:AAO76306 (EMBL:AE016930) (320 aa) fasta scores: E(): 6.9e-91, 73.91% id in 322 aa, and to Listeria innocua probable protease HtpX homolog HtpX or LIN0962 SWALL:HTPX_LISIN (SWALL:Q92D58) (304 aa) fasta scores: E(): 2.7e-30, 39.84% id in 256 aa putative transmembrane protease HtpX homolog	Similar to Q83DZ2 Heat shock protein HtpX from Coxiella burnetii (348 aa). FASTA: opt: 956 Z-score: 1111.3 E(): 5.2e-54 Smith-Waterman score: 1062; 47.091 identity in 361 aa overlap heat shock protein HtpX	Similar to Streptococcus gordonii Challis probable protease HtpX homolog SWALL:HTPX_STRGC (SWALL:O30795) (297 aa) fasta scores: E(): 1.5e-41, 42.52% id in 301 aa, and to Escherichia coli probable protease HtpX or b1829 SWALL:HTPX_ECOLI (SWALL:P23894) (293 aa) fasta scores: E(): 4.9e-17, 32.05% id in 287 aa putative integral membrane heat shock protease	
HELPY00904	GTP cyclohydrolase 1	GTP cyclohydrolase I	GTP cyclohydrolaseI	GTP cyclohydrolase 1	GTP cyclohydrolase I	GTP cyclohydrolase I	GTP cyclohydrolase I	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase I	GTP cyclohydrolase 1	similar to AX063555-1|CAC25094.1| percent identity: 86 in 195 aa putative GTP cyclohydrolase I	Probable GTP cyclohydrolase I	GTP cyclohydrolase I	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase 1	SCE9.10c, folE, probable GTP cyclohydrolase I, len: 201 aa; similar to many e.g. SW:GCH1_BACSU (EMBL:M37320), MtrA, Bacillus subtilis GTP cyclohydrolase I (190 aa), fasta scores; opt: 728 z-score: 880.0 E(): 0, 58.9% identity in 185 aa overlap. Contains Pfam match to entry PF01227 GTP_cyclohydroI, GTP cyclohydrolase I, score 351.80, E-value 7.2e-102, PS00859 GTP cyclohydrolase I signature 1 and PS00860 GTP cyclohydrolase I signature 2 putative GTP cyclohydrolase I	GTP cyclohydrolase 1	GTP cyclohydrolase I	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase I	GTP cyclohydrolase 1	Residues 1 to 222 of 222 are 100 pct identical to residues 1 to 222 of a 222 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288736.1 GTP cyclohydrolase I	GTP cyclohydrolase 1	
HELPY00905	Geranyltranstransferase	geranyltranstransferase (farnesyl-diphosphate synthase)	Putative geranyltranstransferase	Geranyltranstransferase	GERANYLTRANSTRANSFERASE	Putative farnesyl diphosphate synthase	Geranyltranstransferase	Geranyltranstransferase	CDS_ID OB1877 geranyltranstransferase	similar to AL109962-34|CAB53152.1| percent identity: 41 in 357 aa putative polyprenyl synthase	Probable farnesyltranstransferase	geranyltranstransferase (farnesyl-diphosphate synthase)	Geranyltranstransferase	Dimethylallyltransferase	Putative geranyltranstransferase	Geranyltranstransferase	Geranyltranstransferase	Geranylgeranyl pyrophosphate synthase	Geranylgeranyl pyrophosphate synthase	Lin1400 protein	Geranyltranstransferase (farnesyl-diphosphate synthase)	Geranyltranstransferase	Residues 1 to 299 of 299 are 99 pct identical to residues 1 to 299 of a 299 aa protein from Escherichia coli K12 ref: NP_414955.1 geranyltranstransferase (farnesyldiphosphate synthase)	Geranyltranstransferase	Polyprenyl synthetase	Geranyltranstransferase homolog	IspA protein	Probable geranyltranstransferase (Farnesyl- diphosphate synthase) protein	Geranyltranstransferase (Farnesyl-diphosphate synthase) FPP synthase	
HELPY00906	5'-nucleotidase surE	5'-nucleotidase surE	5'-nucleotidase surE	Multifunctional protein surE	5'-nucleotidase surE	survival protein surE	5'-nucleotidase surE	5'-nucleotidase surE	5'-nucleotidase surE	5'-nucleotidase surE	Residues 14 to 268 of 268 are 98 pct identical to residues 1 to 255 of a 255 aa protein from Escherichia coli gb: AAA69254.1 orf, conserved hypothetical protein	Multifunctional protein surE	5'-nucleotidase surE	Multifunctional protein surE	5'-nucleotidase surE	Multifunctional protein surE	Acid phosphatase SurE (Stationary phase survival protein )	conserved gene stationary phase surival protein SurE	Acid phosphatase SurE (Stationary phase survival protein )	stationary-phase survival protein SurE homolog acid phosphatase	5'-nucleotidase surE	5'-nucleotidase surE	5'-nucleotidase surE	identified by similarity to SP:P36664; match to protein family HMM PF01975; match to protein family HMM TIGR00087 acid phosphatase SurE	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark survival protein	5'-nucleotidase surE	IPR002828: Survival protein SurE survival protein, protein damage control	similar to Salmonella typhi CT18 stationary-phase survival protein stationary-phase survival protein	5'-nucleotidase surE	


HELPY00909	6-carboxy-5,6,7,8-tetrahydropterin synthase	Putative 6-pyruvoyl tetrahydrobiopterin synthase	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative 6-pyruvoyl-tetrahydropterin synthase	conserved hypothetical protein	6-pyruvoyl tetrahydrobiopterin synthase-like	6-pyruvoyl-tetrahydropterin synthase-like	6-pyruvoyl-tetrahydropterin synthase-like	hypothetical protein	6-pyruvoyl-tetrahydropterin synthase-like protein	putative 6-pyruvoyl tetrahydrobiopterin synthase	6-pyruvoyl-tetrahydropterin synthase-like protein KEGG: bcn:Bcen_3036 6-pyruvoyl-tetrahydropterin synthase-like	conserved hypothetical protein (Q9ZKR8) Hypothetical protein JHP0867 High confidence in function and specificity	6-pyruvoyl tetrahydrobiopterin synthase, homolog	Putative 6-pyruvoyl-tetrahydropterin synthase	6-pyruvoyl-tetrahydropterin synthase	6-pyruvoyl-tetrahydropterin synthase	6-pyruvoyl tetrahydrobiopterin synthase-like protein	6-pyruvoyl-tetrahydropterin synthase-like protein	Putative uncharacterized protein	Putative 6-pyruvoyl tetrahydrobiopterin synthase	Putative 6-pyruvoyl tetrahydrobiopterin synthase	6-pyruvoyl-tetrahydropterin synthase-like protein	6-pyruvoyl-tetrahydropterin synthase	Putative uncharacterized protein	Putative 6-pyruvoyl tetrahydrobiopterin synthase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00910	Putative uncharacterized protein	Putative	Radical SAM	Radical SAM	Putative uncharacterized protein	hypothetical protein	coenzyme PQQ synthesis protein, conjectural COG0602 Organic radical activating enzymes	Radical SAM domain protein PFAM: Radical SAM domain protein KEGG: hal:VNG6305C hypothetical protein	radical SAM domain protein identified by match to protein family HMM PF04055	Radical SAM domain protein	Radical SAM domain protein	radical SAM domain protein identified by match to protein family HMM PF04055	Radical SAM domain protein	Radical SAM domain protein	Mycobacteriophage protein Gp5 Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	Putative uncharacterized protein	Putative uncharacterized protein	Radical SAM domain protein	Putative uncharacterized protein	Radical SAM domain protein	Putative uncharacterized protein	FO synthase subunit 2 2	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Radical SAM domain protein	Putative uncharacterized protein	
HELPY00911	Putative uncharacterized protein	hypothetical protein	acetyltransferase-like	conserved hypothetical protein High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00912	Proline/betaine transporter	Prop transport protein	proline and betaine transporter	Major facilitator superfamily (MFS)metabolite/H+ symporter	putative permease (MFS superfamily) Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type t : transporter	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	Putative uncharacterized protein	Major facilitator superfamily MFS_1	Putative permease	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	Proline and betaine transporter	Major Facilitator Superfamily protein	Proline and betaine transporter	Major Facilitator Superfamily protein	Major facilitator family transporter	Proline and betaine transporter	pseudo	
HELPY00913	Putative uncharacterized protein	
HELPY00914	Putative uncharacterized protein	
HELPY00915	Amino acid ABC transporter, permease protein	Amino acid ABC transporter	Probable amino acid ABC transporter, permease protein	Putative AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN	Putative amino acid permease integral membrane protein	Similar to: HI1079, YA79_HAEIN probable amino-acid ABC transporter permease protein	ABC-type amino acid transport system, permease component ArtM protein	amino-acid ABC transporter permease protein	amino acid ABC transporter, permease	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine	Best Blastp Hit: pir||E81947 probable amino acid permease integral membrane protein NMA0999 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379701|emb|CAB84268.1| (AL162754) putative amino acid permease integral membrane protein [Neisseria meningitidis] COG0765 Amino acid ABC transporter permease putative ABC transporter, permease protein, amino acid	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine	ABC polar amino acid transporter, inner membrane subunit	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine: (7.4e-41) PFAM: binding-protein-dependent transport systems inner membrane component: (1.1e-31) KEGG: dra:DR0565 putative polar amino acid transport system permease protein, ev=3e-92, 80% identity	Amino acid ABC transporter, permease protein, 3- TM region, His/Glu/Gln/Arg/opine	amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726	amino acid ABC transporter, permease protein	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine	Amino acid ABC transporter, permease	probable amino-acid ABC transporter permease protein YckJ identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726	polar amino acid ABC transporter, inner membrane subunit TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: bur:Bcep18194_A4694 ABC polar amino acid transporter, inner membrane subunit	ABC-type amino-acid transport, permease component ABC-type Amino-acid transport system, permease component. High confidence in function and specificity	polar amino acid ABC transporter, inner membrane subunit TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: bha:BH0171 polar amino acid transport system permease protein	amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726	Polar amino acid uptake ABC transporter, PAAT family, permease protein	Putative amino acid permease integral membrane protein	Putative amino acid ABC transporter, permease protein	amino acid ABC transporter, permease	ABC-type amino acid transport system permease component	
HELPY00916	Amino acid ABC transporter, periplasmic binding protein	CYSTINE-BINDING PERIPLASMIC PROTEIN	AtmA	Putative cyclohexadienyl dehydratase signal peptide protein	amino acid ABC transporter, periplasmic amino acid-binding protein	ABC transporter substrate-binding protein	Probable amino acid ABC transporter, periplasmic- binding protein	amino acid ABC transporter substrate binding protein, putative	Amino acid ABC transporter substrate binding protein	IPR001311: Solute-binding protein/glutamate receptor; IPR001638: Bacterial extracellular solute-binding protein, family 3 putative periplasmic binding transport protein	similar to Salmonella typhi CT18 cystine-binding periplasmic protein precursor cystine-binding periplasmic protein precursor	similar to BRA0682, amino acid ABC transporter, periplasmic amino acid-binding protein FliY, amino acid ABC transporter, periplasmic amino acid-binding protein	Putative AMINO ACID ABC TRANSPORTER, BINDING PROTEIN	Putative amino acid permease substrate-binding protein	ABC transporter substrate-binding protein	best blastp match gb|AAK33377.1| (AE006497) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	ABC-type amino acid transport system, periplasmic component ArtI protein	FliY	cyclohexadienyl dehydratase	identified by match to protein family HMM PF00497 cystine ABC transporter, periplasmic cystine binding protein	ABC transporter substrate-binding protein	Solute-binding protein/glutamate receptor:Bacterial extracellular solute-binding protein, family 3	ABC transporter substrate-binding protein	extracellular solute-binding protein, family 3	ABC transporter substrate-binding protein	ABC-type amino acid transport/signal transduction systems, periplasmic component/domain COG0834	putative solute-binding component of ABC transporter similarity:fasta; with=UniProt:Q92L16_RHIME (EMBL:SME591793); Rhizobium meliloti (Sinorhizobium meliloti).; PUTATIVE AMINO ACID-BINDING PERIPLASMIC ABC TRANSPORTER PROTEIN.; length=257; id 79.377; 257 aa overlap; query 1-257; subject 1-257	ABC transporter substrate-binding protein	probable amino acid ABC transporter, substrate-binding protein similar to SMc03891 [Sinorhizobium meliloti] Similar to swissprot:Q98FA8 Putative location:bacterial periplasmic space Psort-Score: 0.9275; go_component: periplasmic space (sensu Gram-negative Bacteria) [goid 0030288]; go_function: transporter activity [goid 0005215]; go_process: transport [goid 0006810]	
HELPY00917	Alanine racemase	Putative alanine racemase	Alanine racemase	Alanine racemase	Alanine racemase 1	Alanine racemase, biosynthetic	CDS_ID OB3226 D-alanine racemase	alanine racemase	Alanine racemase	Alanine racemase	Alanine racemase	Alanine racemase	Alanine racemase 1	Alanine racemase	SC6G4.23, alr, probable alanine racemase, len: 391 a a; similar to many e.g. ALR_BACST alanine racemase (EC 5.1. 1.1) (388 aa), fasta scores; opt: 532 z-score: 774.2 E(): 0 , 38.6% identity in 376 aa overlap. Contains PS00395 Alanine racemase pyridoxal-phosphate attachment site putative alanine racemase	Alanine racemase 1	Alanine racemase 1	Alanine racemase	Residues 1 to 359 of 359 are 100 pct identical to residues 1 to 359 of a 359 aa protein from Escherichia coli K12 ref: NP_418477.1 alanine racemase 1	Alanine racemase 1	Alanine racemase	Alanine racemase 1	Alanine racemase	Alanine racemase	similar to alanine racemase 1 hypothetical protein	conserved gene alanine racemase	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 alanine racemase	alanine racemase	Alanine racemase	
HELPY00918	D-alanine glycine permease	Putative amino acid symporter	Putative sodium/amino acid (Alanine) symporter	Sodium/alanine symporter	CDS_ID OB0872 amino acid transporter	Amino acid transporter	Na+/alanine symporter	Similar to sodium:alanine symporter and other amino acid transport proteins	Na(+)-linked D-alanine glycine permease	Na+/alanine symporter	amino acid transporter	Sodium-alanine symporter family protein	Putative SODIUM/ALANINE SYMPORTER	Putative amino-acid transporter	Putative amino acid symporter	Sodium:alanine symporter family	best blastp match gb|AAK34121.1| (AE006566) putative amino acid symporter [Streptococcus pyogenes M1 GAS] putative amino acid symporter	Similar to sp|P44917|Y883_HAEIN sp|Q45068|ALST_BACSU sp|P44555|YAAJ_HAEIN sp|P30143|YAAJ_ECOLI; Ortholog to ERGA_CDS_03150 Conserved hypothetical protein (putative Na+/alanine symporter)	Putative D-alanine glycine permease	Na(+)-linked D-alanine glycine permease	Similar to: HI0883, Y883_HAEIN predicted Na+/alanine symporter	Na+/alanine symporter AlsT protein	Na(+)-linked D-alanine and glycine permease	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 amino acid/cation symporter	Na(+)-linked D-alanine glycine permease	putative sodium/alanine symporter family protein	sodium:alanine symporter	Best Blastp Hit: pir||B81228 sodium/alanine symporter, probable NMB0177 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225396|gb|AAF40634.1| (AE002375) sodium/alanine symporter, putative [Neisseria meningitidis MC58] COG1115 Sodium-alanine symporters putative amino-acid transporter	Na(+)-linked D-alanine glycine permease	
HELPY00919	Uncharacterized oxidoreductase HP_0943	CDS_ID OB1015 iminodiacetate oxidase	D-amino acid dehydrogenase 2 small subunit	Probable D-amino-acid dehydrogenase	D-amino-acid dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark D-amino acid dehydrogenase subunit	Hypothetical oxidoreductase JHP0878	conserved Archaeal protein	D-amino acid dehydrogenase, small subunit, putative	D-amino acid dehydrogenase subunit	identified by similarity to SP:P29011; match to protein family HMM PF01266 D-amino acid dehydrogenase, small subunit	D-amino-acid dehydrogenase	CATALYTIC ACTIVITY: A D-AMINO ACID + H(2)O + ACCEPTOR = A 2-OXO ACID + NH(3) + REDUCED ACCEPTOR.  Citation: Lobocka,M., Hennig,J., Wild,J., Klopotowski,T., (1994) J. Bacteriol. 176:1500-1510 (Escherichia coli) D-amino acid dehydrogenase small subunit	FAD dependent oxidoreductase	D-amino-acid dehydrogenase	D-amino-acid dehydrogenase	Glycine/D-amino acid oxidases (deaminating) COG0665	D-amino acid dehydrogenase subunit	conserved hypothetical protein identified by match to protein family HMM PF01266	D-amino-acid dehydrogenase	D-amino acid dehydrogenase	D-amino acid dehydrogenase subunit identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase KEGG: mlo:mlr5698 D-amino acid dehydrogenase, small subunit	D-amino acid dehydrogenase small subunit	D-amino-acid dehydrogenase PFAM: FAD dependent oxidoreductase KEGG: pol:Bpro_1999 D-amino-acid dehydrogenase	D-amino-acid dehydrogenase	D-amino acid dehydrogenase subunit High confidence in function and specificity	probable D-amino acid dehydrogenase small subunit The L-alanine catabolic pathway proceeds in two steps: racemization of the L-isomer to D-alanine by alanine racemase and oxidative deamination of D-alanine to pyruvate and ammonia by D- amino acid dehydrogenase. Similar to trembl|Q7NRT8 (52%) and to sprot|DADA_ECOLI (40%). Pfam (PF01266): D-amino acid oxidase Specificity unclear	D-amino acid dehydrogenase, small subunit	
HELPY00920	UPF0076 protein HP_0944	hypothetical protein	translation initiation inhibitor	Putative uncharacterized protein	Putative translation initiation inhibitor; aldR regulator-like protein	Putative regulatory protein	Probable yabJ	Endoribonuclease L-PSP, putative	Endoribonuclease L-PSP	Translation initiation inhibitor, yabJ B.subtilis ortholog	Translation initiation inhibitor	Putative translation initiation inhibitor	Lin0837 protein	Translation initiation inhibitor homologue	Similar to unknown protein YjgF of Escherichia coli	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 endoribonuclease L-PSP, putative	Translation initiation inhibitor	hypothetical protein	conserved hypothetical protein, translation initiation inhibitor protein	Translation initiation inhibitor-like protein	Translation initiation inhibitor	Putative translation initiation inhibitor	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 endoribonuclease L-PSP, putative	YjgF-like protein; regulation of purine operon putative regulator of purine operon, putative translation initiation inhibitor	translation initiation inhibitor	Translation initiation inhibitor	Protein translation intiation inhibitor	Putative regulator aldR	IPR006056: YjgF-like protein putative translation initiation inhibitor	

HELPY00923	Conserved hypothetical integral membrane protein	Membrane protein, possible transporter	BH3449 protein	Na+/H+ antiporter	NhaC-type sodium/hydrogen antiporter	Putative	Putative integral membrane protein	Na(+)/H(+) antiporter	Similar to: HI1586, YF86_HAEIN predicted Na+/H+ antiporter	Na+/H+ antiporter NhaC protein	Na+/H+ antiporter	conserved putative integral membrane protein	Best Blastp Hit: gb|AAF40961.1| (AE002408) conserved hypothetical protein [Neisseria meningitidis MC58] COG1757 Na+/H+ antiporter NhaC conserved hypothetical protein	transporter 51 (probable sodium/hydrogen, malic/sodium-lactate antiporter)	Na+/H+ antiporter NhaC	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type m : membrane component putative Na+/H+ antiporter family	Na+/H+ antiporter NhaC	Na+/H+ antiporter NhaC	Na+/H+ antiporter NhaC	conserved hypothetical integral membrane protein	Na+/H+ antiporter family protein identified by match to protein family HMM PF03553	Na+/H+ antiporter NhaC	Na+/H+ antiporter family protein	Na+/H+ antiporter NhaC	Na(+)/H(+) antiporter	conserved hypothetical protein Conserved hypothetical protein	Na+/H+ antiporter family identified by match to protein family HMM PF03553	Na+/H+ antiporter NhaC PFAM: Na+/H+ antiporter NhaC KEGG: shm:Shewmr7_1419 Na+/H+ antiporter NhaC	Na+/H+ antiporter	
HELPY00924	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Homologous to H. pylori gene product HP0947,jhp0881 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00925	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	hypothetical protein identified by Glimmer2; putative	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	FdhC protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00926	Ribosomal RNA large subunit methyltransferase H	conserved hypothetical protein	identified by similarity to GP:28202370; match to protein family HMM PF02590 conserved hypothetical protein	Ribosomal RNA large subunit methyltransferase H	Hypothetical UPF0247 protein JHP0883	identified by sequence similarity; putative; ORF located using Blastx; COG1576 conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx; COG1576 conserved hypothetical protein	conserved hypothetical protein	Protein of unknown function DUF163	UPF0247 protein Tmden_1172	conserved hypothetical secreted protein	conserved hypothetical protein TIGR00246 identified by similarity to GB:AAO34816.1; match to protein family HMM PF02590; match to protein family HMM TIGR00246	alpha/beta knot family protein identified by match to protein family HMM PF02590; match to protein family HMM TIGR00246	hypothetical protein similar to jhp_0883; identified by match to protein family HMM PF02590	conserved hypothetical protein Specificity unclear	conserved hypothetical protein identified by match to protein family HMM PF02590	Putative uncharacterized protein	Uncharacterized conserved protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Protein Tmden_1172	Putative uncharacterized protein	Putative uncharacterized protein	Conserved hypothetical secreted protein	Putative uncharacterized protein	
HELPY00927	Acetyl-CoA carboxylase beta subunit	acetyl-CoA carboxylasebeta subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-CoA carboxylase, carboxyl transferase, beta subunit	ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA	Putative acetyl-CoA carboxylase beta subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 1	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	CDS_ID OB2174 acetyl-CoA carboxylase carboxyltransferase beta subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	acetyl-CoA carboxylase (EC 6.4.1.2) carboxyltransferase beta chain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyltransferase beta chain	Residues 29 to 332 of 332 are 99 pct identical to residues 1 to 304 of a 304 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288890.1 acetylCoA carboxylase, carboxytransferase component, beta subunit	AcCoA Carboxylase/Transferase Beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-CoA carboxylase carboxyl transferase beta subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Probable acetyl-coenzyme a carboxylase carboxyl transferase (Subunit beta) protein	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Similar to acetyl-CoA carboxylase beta subunit hypothetical protein	conserved gene acetyl CoA carboxylase, carboxyltransferase, beta subunit	
HELPY00928	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Acyl-CoA thioester hydrolase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Acyl-coa thioester hydrolase	Putative uncharacterized protein	
HELPY00929	Conserved hypothetical integral membrane protein	Competence/damage-inducible protein CinA	Putative competence-damage inducible protein	PUTATIVE COMPETENCE-DAMAGE PROTEIN	CinA-related protein	Putative uncharacterized protein ygaD	hypothetical protein	Putative competence-damage protein	Possible competence-damaged protein	CinA-like protein	SC7C7.09, unknown, len: 181 aa; similar to competence damage induced proteins of B. subtilis and Streptococcus pneumoniae e.g. CINA_STRPN putative competence-damage protein (418 aa), fasta scores; opt: 304 z-score: 431.6 E(): 8.4e-17, 35.8% identity in 165 aa overlap. Contains probable coiled-coil from 133 to 175 conserved hypothetical protein SC7C7.09	Uncharacterized protein	Competence /damage-inducible protein cinA	Residues 2 to 166 of 166 are 99 pct identical to residues 1 to 165 of a 165 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289247.1 orf, conserved hypothetical protein	Putative competence-damaged protein	Competence-damaged protein	Putative uncharacterised conserved protein cina	Similar to unknown protein YgaD of Escherichia coli	similar to hypothetical proteins hypothetical protein	conserved gene hypothetical 17.2kDa protein, CinA-related competence damage protein	similar to hypothetical proteins hypothetical protein	CinA-related protein	Putative uncharacterized protein	Competence-damage associated protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	IPR008136: CinA, C-terminal putative cytoplasmic protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	similar to BR1121, competence/damage-inducible protein CinA CinA, competence/damage-inducible protein CinA	
HELPY00930	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00931	Oxygen-insensitive NADPH nitroreductase	identified by match to protein family HMM PF00881 nitroreductase family protein	NAD(P)H-flavin oxidoreductase	Biological Process: electron transport (GO:0006118), Molecular Function: oxidoreductase activity (GO:0016491) putative Nitroreductase	Putative aldehyde dehydrogenase	identified by match to protein family HMM PF00881 nitroreductase family protein	NAD(P)H-flavin oxidoreductase	nitroreductase family protein	hypothetical protein, similar to oxidoreductase	similar to gi|48825620|ref|ZP_00286863.1| [Enterococcus faecium], percent identity 61 in 204 aa, BLASTP E(): 1e-68 putative nitroreductase	Nitroreductase COG0778	oxygen-insensitive NADPH nitroreductase	DrgA protein	nitroreductase	nitroreductase PFAM: nitroreductase KEGG: mfa:Mfla_1136 nitroreductase	nitroreductase	oxygen-insensitive NADPH nitroreductase Putative NAD(P)H nitroreductase (EC 1.-.-.-) High confidence in function and specificity	Putative NAD(P)H nitroreductase	Probable nitroreductase	Complete genome	NAD(P)H nitroreductase	nitroreductase family protein	Nitroreductase	YdgI	Nitroreductase	Nitroreductase	Putative uncharacterized protein	Nitroreductase	Nitroreductase	
HELPY00932	Prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase (Spore germination protein)	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	CDS_ID OB2481; spore germination protein prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Residues 1 to 291 of 291 are 100 pct identical to residues 1 to 291 of a 291 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289380.1 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase	conserved gene prolipoprotein diacylglyceryl transferase	
HELPY00933	Uncharacterized RNA pseudouridine synthase HP_0956	Ribosomal large subunit pseudouridine synthase A	RNA pseudouridylate synthase family protein	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase A	Pseudouridine synthase	identified by match to protein family HMM PF00849 RNA pseudouridylate synthase family protein	Pseudouridine synthase	ribosomal large subunit pseudouridine synthase	Similar to Rickettsia prowazekii ribosomal large subunit pseudouridine synthase C RluC or rp258 SWALL:RLUC_RICPR (SWALL:Q9ZDR7) (303 aa) fasta scores: E(): 1.2e-15, 29.82% id in 285 aa and to Chlamydia trachomatis predicted pseudouridine synthetase family YceC or ct106 SWALL:O84108 (EMBL:AE001284) (303 aa) fasta scores: E(): 8.4e-71, 61.13% id in 265 aa ribosomal large subunit pseudouridine synthase C	Ribosomal pseudouridine synthase	Hypothetical RNA pseudouridine synthase JHP0890	Pseudouridine synthase	best blastp match gb|AAK34724.1| (AE006626) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	COG0564 RluA pseudouridylate synthases, 23S RNA-specific ribosomal large subunit pseudouridine synthase	23S RNA-specific; COG0564 pseudouridylate synthase	ribosomal large subunit pseudouridine synthase A	pseudouridylate synthase; Uracil hydrolyase; Similar to: HI0176, RLUD_HAEIN ribosomal large subunit pseudouridine synthase D	Pseudouridylate synthases, 23S RNA-specific RluA protein	identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthase D	Pseudouridine synthase, RluD	Pseudouridine synthase	pseudouridine synthase	Pseudouridine synthase, RluD	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase D COG0564 [J] Pseudouridylate synthases, 23S RNA-specific	ribosomal large subunit pseudouridine synthase C EC 4.2.1.70	ribosomal large subunit pseudouridine synthase, RluA family identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005	Pseudouridine synthase	
HELPY00934	3-deoxy-d-manno-octulosonic-acid transferase	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE	KDO transferase	3-deoxy-D-manno-octulosonic-acid transferase	Putative 3-deoxy-manno-octulosonate	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	Putative 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-d-manno-octulosonic-acid transferase	Residues 1 to 425 of 425 are 99 pct identical to residues 1 to 425 of a 425 aa protein from Escherichia coli O157:H7 ref: NP_312535.1 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	KdtA protein	Probable 3-deoxy-d-manno-octulosonic-acid transferase transmembrane protein	3-deoxy-D-manno-octulosonic-acid transferase	3-Deoxy-D-manno-oct-2-ulosonic acid transferase	conserved gene 3-deoxy-D-manno-oct-2-ulosonic acid transferase	3-Deoxy-D-manno-oct-2-ulosonic acid transferase	identified by similarity to SP:P23282; match to protein family HMM PF04413 3-deoxy-D-manno-octulosonic acid transferase	Probable 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic acid transferase	identified by similarity to SP:P23282; match to protein family HMM PF04413 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic acid transferase protein	3-deoxy-D-manno-octulosonic-acid transferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-deoxy-D-manno-octulosonic acid transferase	3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)	similar to Salmonella typhi CT18 3-deoxy-D-manno-octulosonic-acid transferase 3-deoxy-D-manno-octulosonic-acid transferase	
HELPY00935	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to OMNI:HP0958; match to protein family HMM PF02591 conserved hypothetical protein	Putative uncharacterized protein TTHA1624	Similar to Chlamydia pneumoniae ct398 hypothetical protein cpn0525 or cpj0525 or cp0228 SWALL:Q9Z827 (EMBL:AE001637) (254 aa) fasta scores: E(): 2.5e-64, 86.61% id in 254 aa. CDS contains coiled coil region from residues 32-124. conserved hypothetical protein	Putative uncharacterized protein	Putative	Hypothetical protein	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0883 SWALL:AAO75990 (EMBL:AE016929) (276 aa) fasta scores: E(): 4e-65, 89.37% id in 273 aa, and to Chlamydia trachomatis hypothetical protein CT398 SWALL:O84403 (EMBL:AE001313) (254 aa) fasta scores: E(): 1.5e-06, 23.16% id in 259 aa conserved hypothetical protein	Zn-ribbon protein, possibly nucleic acid-binding	identified by similarity to OMNI:NTL01CJ00668 conserved hypothetical protein	similar to Zn-ribbon protein possibly nucleic acid-binding	Possibly nucleic acid-binding	protein of unknown function DUF164	uncharacterized ACR, superfamily identified by match to protein family HMM PF02591	Putative uncharacterized protein	conserved hypothetical protein	protein of unknown function DUF164 PFAM: protein of unknown function DUF164: (1.6e-13) KEGG: dra:DR0291 hypothetical protein, ev=9e-93, 71% identity	hypothetical protein	protein of unknown function DUF164	conserved hypothetical protein	hypothetical protein	Zn-ribbon protein, possibly nucleic acid-binding	Hypothetical protein	Zn binding protein	conserved hypothetical protein	protein of unknown function DUF164 PFAM: protein of unknown function DUF164 KEGG: cch:Cag_1111 hypothetical protein	
HELPY00936	UPF0135 protein HP_0959	Putative uncharacterized protein MYPE8340	Putative uncharacterized protein	UPF0135 protein CA_C1303	Putative uncharacterized protein	NIF3-related protein	Putative uncharacterized protein	identified by similarity to SP:O25613; match to protein family HMM PF01784; match to protein family HMM TIGR00486 conserved hypothetical protein TIGR00486	hypothetical protein	UPF0135 protein ykiD	Putative uncharacterized protein	Putative uncharacterized protein gbs1275	Hypothetical UPF0135 protein JHP0893	identified by Glimmer2; putative conserved hypothetical protein TIGR00486	UPF0135 protein SPy_0931/M5005_Spy0732	best blastp match gb|AAK33846.1| (AE006542) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	Conserved hypothetical protein	, predicted protein, len = 280 aa, ngg1 interacting factor 3-like; predicted pI = 5.8397; good similarity to several proteins containing the NIF3 (NGG1p interacting factor 3) domain (pfam:PF01784;2e-31;codon 11-271 NGG1 interacting factor 3-like protein	identified by sequence similarity; putative; ORF located using Blastx; COG0327 conserved hypothetical protein	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 NIF3 family protein	NIF3-related protein	Protein of unknown function DUF34	NIF3-related protein	Putative uncharacterized protein	NIF3-related protein COG0011 [S] Uncharacterized conserved protein	NIF3-related protein	hypothetical protein	conserved hypothetical protein TIGR00486 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486	Conserved hypothetical protein	
HELPY00937	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase, alpha chain	Glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	CDS_ID OB1949 glycine-tRNA ligase alpha chain	glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha chain	Residues 1 to 303 of 303 are 100 pct identical to residues 1 to 303 of a 303 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290144.1 glycine tRNA synthetase, alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase, alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	glycyl-tRNA synthetase alpha chain	conserved gene glycyl tRNA synthetase, alpha subunit	glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha chain	
HELPY00938	Glycerol-3-phosphate dehydrogenase	NAD+ dependent glycerol-3-phosphate dehydrogenase	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	similar to AX065061-1|CAC25770.1| percent identity: 82 in 332 aa putative NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	SC7A1.03, gpsA, glycerol-3-phosphate dehydrogenase, len: 366aa; similar to many eg. SW:GPDA_BACSU glycerol-3-phosphate dehydrogenase from Bacillus subtilis (345 aa) fasta scores; opt: 874, z-score: 1221.4, E(): 0, (41.8% identity in 330 aa overlap). Contains a possible PS00017 ATP /GTP-binding site motif A (P-loop) and Pfam match to entry PF01210 NAD_Gly3P_dh, NAD-dependent glycerol-3-phosphate dehydrogenase, score 295.10, E-value 8.8e-85. glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Residues 1 to 339 of 339 are 100 pct identical to residues 1 to 339 of a 339 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290191.1 glycerol-3-phosphate dehydrogenase (NAD+)	Glycerol-3-phosphate dehydrogenase	

HELPY00940	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00941	Putative uncharacterized protein	
HELPY00942	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00943	Putative uncharacterized protein	Putative	identified by similarity to GB:AAM25082.1; match to protein family HMM PF00350; match to protein family HMM PF01926 conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	pseudo	Putative uncharacterized protein	
HELPY00944	Virulence-associated protein D homolog	virulence associated protein D (O25620) Virulence-associated protein D homolog High confidence in function and specificity	Virulence-associated protein D (VapD) conserved region	Virulence associated protein D	Virulence associated protein D	
HELPY00946	Cation efflux system protein	Putative cation efflux system protein	Heavy metal efflux pump, CzcA family	Divalent cation exporter protein	identified by similarity to SP:P94177; match to protein family HMM PF00873; match to protein family HMM TIGR00914 cation efflux system protein CzcA	Heavy metal efflux pump CzcA	Heavy metal efflux pump CzcA	heavy metal efflux pump CzcA	Heavy metal efflux pump CzcA	Heavy metal efflux pump CzcA	Heavy metal efflux pump, CzcA family precursor	cobalt-zinc-cadmium resistance protein	Cobalt-zinc-cadmium resistance protein czcA	Heavy metal efflux pump CzcA	Heavy metal efflux pump CzcA	Heavy metal efflux pump, CzcA family protein	heavy metal cation efflux protein (P94177) Cation efflux system protein czcA High confidence in function and specificity	heavy metal efflux pump, CzcA family TIGRFAM: heavy metal efflux pump, CzcA family PFAM: acriflavin resistance protein KEGG: shm:Shewmr7_3951 heavy metal efflux pump, CzcA family	heavy metal efflux pump, CzcA family TIGRFAM: heavy metal efflux pump, CzcA family PFAM: acriflavin resistance protein KEGG: cps:CPS_1943 cation efflux system protein CzcA	Putative cation efflux system protein	Putative cation efflux system protein	Heavy metal efflux pump, CzcA family precursor	Heavy metal efflux pump, CzcA family precursor	Heavy metal efflux pump, CzcA family precursor	TIGRFAM: heavy metal efflux pump, CzcA family PFAM: acriflavin resistance protein KEGG: shn:Shewana3_4066 heavy metal efflux pump, CzcA family heavy metal efflux pump, CzcA family	Heavy metal efflux pump, CzcA family precursor	Putative cation efflux system protein	Cation efflux system protein CzcA	Cation efflux system membrane protein A	
HELPY00947	Nickel-cobalt-cadmium resistance protein	Possible RND divalent metal cation efflux membrane fusion protein CzcB	Putative uncharacterized protein	Putative cation efflux system protein	Putative heavy metal efflux system protein	Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 cation efflux family protein	Secretion protein HlyD	Secretion protein HlyD	Secretion protein HlyD	Secretion protein HlyD	Secretion protein, HlyD family	Secretion protein HlyD precursor	secretion protein HlyD	heavy metal resistance protein CzcB identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730	Secretion protein HlyD	cobalt-zinc-cadmium resistance protein	Cobalt-zinc-cadmium resistance protein czcB	Secretion protein HlyD	secretion protein HlyD	HlyD family secretion protein	efflux transporter, RND family, MFP subunit TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: bcn:Bcen_4685 secretion protein HlyD	cobalt-zinc-cadmium resistance protein (Q44585) Nickel-cobalt-cadmium resistance protein nccB Function unclear	putative membrane fusion protein Putative membrane fusion protein. Homology to cnrb of A. eutrophus of 30% (pir|F47056). Proteins of the MFP family function as auxiliary proteins or 'adaptors',connecting a primary porter in the cytoplasmic membrane of a Gram-negative bacterium with an outer membrane factor protein that serves a porin or channel function in the outer membrane. In A. eutrophus is this protein involved in cobalt and nickel resistance. No domains predicted. No signal peptide No TMHs Family membership	heavy metal resistance protein CzcB identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730	Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family	cobalt-zinc-cadmium resistance protein CzcB Evidence 2b : Function of strongly homologous gene; Product type t : transporter	Putative cation efflux membrane fusion protein	EsvF1	
HELPY00948	Putative uncharacterized protein	Putative	hypothetical protein	nickel cobalt outer membrane efflux protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Nickel cobalt outer membrane efflux protein	
HELPY00949	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase, beta subunit	GLYCYL-TRNA SYNTHETASE BETA CHAIN	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	CDS_ID OB1948 glycine-tRNA ligase beta chain	Probable glycyl-tRNA synthetase	glycyl-tRNA synthetase, beta chain	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Putative glycyl-tRNA synthetase, beta chain	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase alpha chain and beta chain	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta chain	Residues 1 to 689 of 689 are 99 pct identical to residues 1 to 689 of a 689 aa protein from Escherichia coli O157:H7 ref: NP_312469.1 glycine tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	GlyS protein	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	glycyl-tRNA synthetase beta chain	conserved gene glycyl tRNA synthetase, beta subunit	glycyl-tRNA synthetase beta chain	
HELPY00950	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00951	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase (phosphoglyceromutase)	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	SC1A2.27c, possible phosphoglycerate mutase, len: 511 aa. Similar to many 2,3-bisphosphoglycerate-independent phosphoglycerate mutases (EC 5.4.2.1) e.g. Synechocystis sp. (strain PCC 6803) SW:PMGI_SYNY3 (EMBL:D90915) (532 aa), fasta scores opt: 1029 z-score: 1146.1 E():0 36.7% identity in 518 aa overlap and Pseudomonas syringae (pv. tomato) SW:PMGI_PSESM (EMBL:U12776) (510 aa), fasta scores opt: 999 z-score: 1113.0 E(): 0 34.9% identity in 519 aa overlap. Contains a Pfam match to entry PF01676 Metalloenzyme, Metalloenzyme superfamily. putative phosphoglycerate mutase.	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	Residues 49 to 562 of 562 are 99 pct identical to residues 1 to 514 of a 514 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290195.1 putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	Highly similar to phosphoglycerate mutase proteins hypothetical protein	conserved gene phosphoglycerate mutase, 2,3-bisphosphoglycerate independent	Highly similar to phosphoglycerate mutase proteins hypothetical protein	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	phosphoglycerate mutase	identified by match to protein family HMM PF01676; match to protein family HMM PF06415; match to protein family HMM TIGR01307 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	InterProMatches:IPR005995; Molecular Function: phosphoglycerate mutase activity (GO:0004619), Biological Process: glucose catabolism (GO:0006007) phosphoglycerate mutase	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	
HELPY00952	Glutamyl-tRNA(Gln) amidotransferase subunit C	Glu-tRNAGln amidotransferase	Glutamyl-tRNA(Gln) amidotransferase subunit C	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Glu-tRNA amidotransferase, subunit C	glutamyl-tRNA(Gln) amidotransferase, C subunit identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135	glutamyl-tRNA amidotransferase, subunit C (P58250) Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.-) (Glu-ADT subunit C) High confidence in function and specificity	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135	Glutamyl-tRNA amidotransferase subunit C	Glutamyl-tRNA amidotransferase subunit C	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Putative Glu-tRNAGln amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase, subunit C	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase, C subunit	Aspartyl/glutamyl-tRNA amidotransferase subunit C	Glu-tRNA amido transferase, subunit C	Glutamyl-tRNA(Gln) amidotransferase, C subunit	Glu-tRNAGln amidotransferase, subunit C	Glutamyl-tRNA amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C	
HELPY00953	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE	7,8-diaminopelargonic acid synthetase	similar to AE007027-12|AAK45886.1| percent identity: 59 in 380 aa adenosylmethionine--8-amino-7-oxononanoate transaminase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Denosylmethionine-8-amino-7-oxononanoate aminotransferase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Residues 38 to 466 of 466 are 98 pct identical to residues 1 to 429 of a 429 aa protein from Escherichia coli O157:H7 ref: NP_308879.1 7,8-diaminopelargonic acid synthetase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Aminotransferase class-III pyridoxal-phosphate	Probable adenosylmethionine-8-amino-7- oxononanoate aminotransferase protein	Adenosylmethionine--8-amino-7-oxononanoate transaminase	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	conserved gene adenosylmethionine-8-amino-7-oxononanoate aminotransferase	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Adenosylmethionine-8-amino-7-oxononanoate transaminase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508 adenosylmethionine--8-amino-7-oxononanoate aminotransferase	BioA	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Mb1595, bioA, len: 437 aa. Equivalent to Rv1568, len: 437 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 437 aa overlap). Probable bioA, adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62). Highly similar to BIOA_MYCLE|P4548 from M.  leprae (436 aa), FASTA results: opt: 2534, E(): 0, (85.1% identity in 436 aa overlap). Also similar to other M.  tuberculosis proteins e.g. MTCY227.12c (449 aa), FASTA score: E(): 3.5e-16, (29.5% identity in 421 aa overlap).  Contains aminotransferases class-III pyridoxal-phosphate attachment site (PS00600). BELONGS TO CLASS-III OF PYRIDOXAL-PHOSPHATE-DEPENDENT AMINOTRANSFERASES. Probable adenosylmethionine-8-amino-7-oxononanoate aminotransferase bioA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark adenosylmethionine-8-amino-7-oxononanoate aminotransferase	IPR005814: Aminotransferase class-III 7,8-diaminopelargonic acid synthetase	similar to Salmonella typhi CT18 adenosylmethionine-8-amino-7-oxononanoate aminotransferase adenosylmethionine-8-amino-7-oxononanoate aminotransferase	Adenosylmethionine-8-amino-7-oxononanoate aminotranferase	
HELPY00954	Conserved hypothetical secreted protein	Putative protease maturation protein	Peptidyl-prolyl cis-trans isomerase protein	similar to peptidyl-prolyl cis-trans isomerase D hypothetical protein	conserved gene peptidyl prolyl cis-trans isomerase D	identified by similarity to PIR:T46851 conserved hypothetical protein	identified by similarity to SP:P77241 peptidyl-prolyl cis-trans isomerase D, homolog	Putative uncharacterized protein	Peptidyl-prolyl cis-trans isomerase protein	Putative	Code: O; COG: COG0760 putative protease maturation protein	Code: O; COG: COG0760 putative protease maturation protein	peptidyl-prolyl cis-trans isomerase D	Putative uncharacterized protein	putative peptidyl-prolyl cis-trans isomerse D KEGG: sil:SPO2145 putative peptidyl-prolyl cis-trans isomerse D, ev=1e-178, 52% identity	Peptidyl-prolyl cis-trans isomerase D	peptidyl-prolyl cis-trans isomerase D	PpiC-type peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase D	peptidyl-prolyl cis-trans isomerase	peptidyl-prolyl isomerase COG0760 Parvulin-like peptidyl-prolyl isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase KEGG: bur:Bcep18194_A5221 PpiC-type peptidyl-prolyl cis-trans isomerase	putative peptidyl-prolyl cis-trans isomerase D, homolog	PpiC-type peptidyl-prolyl cis-trans isomerase PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase KEGG: hch:HCH_02164 parvulin-like peptidyl-prolyl isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase precursor	conserved hypothetical secreted protein Function unclear	Putative PpiC-type peptidyl-prolyl cis-trans isomerase	Hypothetical protein	peptidyl-prolyl cis-trans isomerase D, homolog	
HELPY00955	Cell division protein ftsA	Putative cell division protein	Cell division protein FtsA	CELL DIVISION PROTEIN FTSA	Cell division protein FtsA	Cell division protein FtsA	Cell division protein ftsA	CDS_ID OB1472 cell-division protein	cell division protein FtsA	Cell division protein FtsA	Cell division protein FtsA	Cell division protein	Putative cell division protein FtsA	Cell division protein, ftsA	Cell-division protein	Cell division protein ftsA	Predicted ATPases of the HSP70 class involved in cell division	Cell division protein FtsA	CELL DIVISION PROTEIN FTSA	FtsA protein	Cell division protein ftsA	FtsA	Residues 1 to 420 of 420 are 100 pct identical to residues 1 to 420 of a 420 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285790.1 ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes	Cell division protein FtsA	Cell division protein FtsA	Cell division protein ftsA	FtsA protein	Probable cell division protein ftsa	Cell division protein	
HELPY00956	Cell division protein ftsZ	cell-division initiation protein (septum formation)	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein FtsZ	putative N-terminal transit sequence cell division protein FtsZ	Cell division protein ftsZ	CELL DIVISION PROTEIN FTSZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	CDS_ID OB1473 cell division initiation protein	Cell division protein ftsZ	similar to AB003132-3|BAA21687.1| percent identity: 85 in 430 aa cell division protein FtsZ	cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	SC4A10.15c, ftsZ, cell division protein, len: 399 aa; previously sequenced as SW:FTSZ_STRCO (EMBL:U10879), ftsZ, Streptomyces coelicolor cell division protein (399 aa) and identical that sequence. Contains PS01134 FtsZ protein signature 1 and PS01135 FtsZ protein signature 2 cell division protein	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	
HELPY00957	Conserved hypothetical secreted protein	
HELPY00958	Exonuclease VII-like protein	



HELPY00960	Conserved hypothetical integral membrane protein	Conserved protein, putative mechanosensitive ion channel	Putative uncharacterized protein VP2598	Small-conductance mechanosensitive channel	hypothetical protein	Uncharacterized mscS family protein BU452	Small-conductance mechanosensitive channel	Small conductance mechanosensitive ion channel	Residues 1 to 286 of 286 are 100 pct identical to residues 1 to 286 of a 286 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289491.1 putative transport protein	Similar to putative transport protein YggB of Escherichia coli	identified by similarity to GB:BAC95620.1; match to protein family HMM PF00924 mechanosensitive ion channel family protein	Small conductance mechanosensitive ion channel	Mechanosensitive ion channel protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark small conductance mechanosensitive ion channel	Putative uncharacterized protein	Small conductance mechanosensitive ion channel	Putative	Hypothetical protein	small mechanosensitive ion channel, MscS family	Putative uncharacterized protein	Uncharacterized mscS family protein bbp_402	putative mechanosensitive channel protein	small conductance mechanosensitive ion channel	identified by match to protein family HMM PF00924 mechanosensitive ion channel family protein	conserved hypothetical protein	identified by match to protein family HMM PF00924 mechanosensitive ion channel family protein	identified by match to protein family HMM PF00924 mechanosensitive ion channel family protein	MscS Mechanosensitive ion channel:Conserved TM helix	MscS Mechanosensitive ion channel	


HELPY00963	Putative uncharacterized protein	


HELPY01502	IS605 transposase	IS200-type transposase	identified by match to protein family HMM PF01797 ISChy9, transposase orfA	Transposase IS200-like	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy putative transposase	Transposase IS200-like	IS605 family transposase orfA identified by match to protein family HMM PF01797	ISSoc10, orfA transposase identified by similarity to PIR:AI2478; match to protein family HMM PF01797	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: tfu:Tfu_1323 transposase-related protein	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: hma:rrnAC0815 probable transposase	transposase	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: mva:Mvan_1583 transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	Transposase	Putative uncharacterized protein	Transposase IS200-like protein	Transposase	Transposase IS200-family protein	Transposase IS200	Transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	
HELPY01501	IS605 transposase	transposase, IS605 OrfB family TIGRFAM: transposase, IS605 OrfB family PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB KEGG: noc:Noc_1501 transposase	ISHa1675 transposase B	Transposase, IS605 OrfB family	

HELPY00966	Putative uncharacterized protein	


HELPY00969	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00970	Integrase/recombinase	Tyrosine recombinase xerD	CDS_ID OB1548 integrase:recombinase	Probable integrase/recombinase CodV	Integrase/recombinase	Tyrosine recombinase xerC	Tyrosine recombinase xerC	Tyrosine recombinase xerC	Residues 1 to 298 of 298 are 99 pct identical to residues 1 to 298 of a 298 aa protein from Escherichia coli K12 ref: NP_417370.1 site-specific recombinase	Phage integrase:Phage integrase N-terminal SAM- like domain	integrase/recombinase	Tyrosine recombinase xerC	Integrase/recombinase	XerC COG4974 Site-specific recombinase XerD integrase-recombinase	IPR002104: Phage integrase; IPR004107: Phage integrase, N-terminal SAM-like recombinase, site-specific	similar to Salmonella typhi CT18 site-specific integrase/recombinase site-specific integrase/recombinase	site-specific recombinase XerC homolog	INTEGRASE/RECOMBINASE	Ortholog of S. aureus MRSA252 (BX571856) SAR1228 putative integrase/recombinase	site-specific recombinase XerC homolog	identified by similarity to SP:P22885; match to protein family HMM PF00589; match to protein family HMM PF02899 integrase/recombinase XerC	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme site-specific tyrosine recombinase	integrase/recombinase (XerD/RipX family)	Similar to Staphylococcus aureus tyrosine recombinase XerC or sav1252 or sa1095 SWALL:XERC_STAAM (SWALL:Q99UL9) (298 aa) fasta scores: E(): 8.7e-33, 35.61% id in 292 aa, and to Bacteroides thetaiotaomicron integrase, site-specific recombinase BT2742 SWALL:Q8A461 (EMBL:AE016937) (293 aa) fasta scores: E(): 2.2e-98, 89.07% id in 293 aa, and to Porphyromonas gingivalis W83 site-specific recombinase, phage integrase family/ribosomal subunit interface protein PG0386 SWALL:AAQ65592 (EMBL:AE017173) (400 aa) fasta scores: E(): 1.6e-46, 46.39% id in 291 aa putative site-specific recombinase	Tyrosine recombinase xerD	integrase/recombinase XerD	site-specific integrase/recombinase XerD protein	Region start changed from 1043320 to 1043491 (-171 bases) integrase/recombinase	site-specific recombinase XerC homolog	
HELPY00971	Putative uncharacterized protein	

HELPY01502	IS605 transposase	IS200-type transposase	identified by match to protein family HMM PF01797 ISChy9, transposase orfA	Transposase IS200-like	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy putative transposase	Transposase IS200-like	IS605 family transposase orfA identified by match to protein family HMM PF01797	ISSoc10, orfA transposase identified by similarity to PIR:AI2478; match to protein family HMM PF01797	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: tfu:Tfu_1323 transposase-related protein	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: hma:rrnAC0815 probable transposase	transposase	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: mva:Mvan_1583 transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	Transposase	Putative uncharacterized protein	Transposase IS200-like protein	Transposase	Transposase IS200-family protein	Transposase IS200	Transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	

HELPY00973	PARA protein	Putative partition protein	Partition protein A	Putative	ParA family protein	Similar to Q9F260 Partition protein from Actinobacillus actinomycetemcomitans (213 aa). FASTA: opt: 286 Z-score: 339.2 E(): 4.8e-11 mith-Waterman score: 286; 29.245 identity in 212 aa overlap chmomosome partition protein A	identified by match to protein family HMM PF01656 parA family protein	ParA family protein	Plasmid stability protein ParA	partition protein A	plasmid partition protein identified by similarity to GB:AAG24419.1	Cobyrinic acid a,c-diamide synthase	conserved hypothetical protein	Cobyrinic acid a,c-diamide synthase	Cobyrinic acid a,c-diamide synthase	Cobyrinic acid a,c-diamide synthase	putative partition protein	chromosome partitioning protein A similar to parA (Atu2136) [Agrobacterium tumefaciens str. C58] Similar to swissprot:Q8UDI9 Putative location:bacterial cytoplasm Psort-Score: 0.4200; go_component: extrachromosomal DNA [goid 0046821]	Hypothetical protein	Hypothetical protein	Hypothetical protein	chmomosome partition protein A Similar to Q9F260 Partition protein from Actinobacillus actinomycetemcomitans (213 aa). FASTA: opt: 286 Z-score: 339.2 E(): 4.8e-11 mith-Waterman score: 286; 29.245 identity in 212 aa overlap	Putative uncharacterized protein	conserved hypothetical protein	ATPases involved in chromosome partitioning-like	ATPase involved in chromosome partitioning	Cobyrinic acid a,c-diamide synthase PFAM: Cobyrinic acid a,c-diamide synthase KEGG: rme:Rmet_1486 cobyrinic acid a,c-diamide synthase	Cobyrinic acid a,c-diamide synthase PFAM: Cobyrinic acid a,c-diamide synthase KEGG: sil:SPO0461 ParA family protein	Cobyrinic acid a,c-diamide synthase PFAM: Cobyrinic acid a,c-diamide synthase KEGG: aae:aq_aa35 hypothetical protein	
HELPY00974	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00975	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	


HELPY00978	Putative uncharacterized protein	Putative uncharacterized protein	



HELPY00980	IS200 insertion sequence from SARA17	IPR002686: transposase IS200-like transposase	similar to Salmonella typhi CT18 putative IS element transposase putative IS element transposase	Putative transposase, IS200-like	IS200-type transposase	Transposase IS200-like	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative transposase IS200-like	Code: L; COG: COG1943 putative transposase TnA	hypothetical protein similarity to COG1943 Predicted transposase	transposase	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: ecc:c3803 putative transposase	Transposase IS200-family protein	ISHa1942 transposase A homolog IS606-like IS element Specificity unclear	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: sec:SCV07 transposase	Transposase, IS200 family	Probable transposase	ISHa1942 transposase A homolog	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: sma:SAV821 putative IS200-like transposase	pseudo	Transposase IS200-family protein	Transposase, IS605 family	IS200 transposase orfA	Putative uncharacterized protein	Transposase	Putative IS element transposase	Transposase	Transposase family protein	Transposase IS200-family protein	Transposase, IS200, part of IS605 with following ORF	



HELPY00982	Polyphosphate kinase	Polyphosphate kinase	POLYPHOSPHATE KINASE	polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	SCD84.12c, ppk, polyphosphate kinase, len: 774 aa; similar to TR:AAD29112 (EMBL:AF087931) Pseudomonas aeruginosa olyphosphate kinase Ppk, 690 aa; fasta scores: opt: 1802 z-score: 1999.8 E(): 0; 44.2% identity in 684 aa overlap and to SW:PPK_ECOLI (EMBL:L03719) Escherichia coli polyphosphate kinase (EC 2.7.4.1) Pkk, 687 aa; fasta scores: opt: 1262 z-score: 1400.2 E(): 0; 34.7% identity in 657 aa overlap polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	identified by similarity to SP:Q9S646; match to protein family HMM PF02503 polyphosphate kinase	polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	identified by similarity to SP:Q9S646; match to protein family HMM PF02503 polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Mb3008, ppk, len: 742 aa. Equivalent to Rv2984, len: 742 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 742 aa overlap). Probable ppk, polyphosphate kinase (EC 2.7.4.1), equivalent to O33127|PPK_MYCLE POLYPHOSPHATE KINASE from Mycobacterium leprae (739 aa), FASTA scores: opt: 4264, E(): 0, (87.85% identity in 742 aa overlap). Also highly similar to others e.g. Q9KZV6|PPK_STRCO from Streptomyces coelicolor (746 aa), FASTA scores: opt: 1979, E(): 2.6e-117, (59.9% identity in 701 aa overlap); Q9KD27|PPK_BACHD from Bacillus halodurans (705 aa), FASTA scores: opt: 1319, E(): 1.4e-75, (45.55% identity in 674 aa overlap); Q9PAC7|PPK_XYLFA from Xylella fastidiosa (698 aa), FASTA scores: opt: 1300, E(): 2.2e-74, (43.3% identity in 693 aa overlap); etc. BELONGS TO THE POLYPHOSPHATE KINASE FAMILY. PROBABLE POLYPHOSPHATE KINASE PPK (POLYPHOSPHORIC ACID KINASE) (ATP-POLYPHOSPHATE PHOSPHOTRANSFERASE)	Polyphosphate kinase	similar to BR0748, polyphosphate kinase Ppk, polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	Polyphosphate kinase	
HELPY00983	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	CDS_ID OB1493; catalytic subunit of dihydroorotate oxidase dihydroorotase dehydrogenase	similar to AF024666-9|AAG03363.1| percent identity: 73 in 357 aa dihydroorotate dehydrogenase	dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	SC9C5.06c, pyrD, dihydroorotate dehydrogenase, len: 368 aa; similar to SW:PYRD_ECOLI (EMBL:X02826) Escherichia coli dihydroorotate dehydrogenase (EC 1.3.3.1) PyrD, 336 aa; fasta scores: opt: 874 z-score: 976.6 E(): 0; 43.2% identity in 336 aa overlap. Contains Pfam match to entry PF01180 DHOdehase, Dihydroorotate dehydrogenase and match to Prosite entry PS00912 Dihydroorotate dehydrogenase signature 2 dihydroorotate dehydrogenase	Dihydroorotate oxidase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Residues 10 to 345 of 345 are 99 pct identical to residues 1 to 336 of a 336 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286820.1 dihydro-orotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	Dihydroorotate dehydrogenase	conserved gene dihydroorotate oxidase	
HELPY00984	Protease	Putative uncharacterized protein	ZINC PROTEASE	Putative peptidase	protease	Peptidase, M16 family	Putative protease	Metalloprotease	Insulinase family	Processing proteinase	Probable peptidase protein	Similar to zinc protease hypothetical protein	conserved gene zinc protease (peptidase, M16 family)	Similar to zinc protease hypothetical protein	identified by match to protein family HMM PF00675; match to protein family HMM PF05193 peptidase, M16 family	putative zinc protease protein	identified by match to protein family HMM PF00675; match to protein family HMM PF05193 peptidase, M16 family	peptidase	Precessing proteinase	identified by match to protein family HMM PF00675; match to protein family HMM PF05193 peptidase, M16 family	Zn-dependent peptidase	Putative zinc protease	similar to BMEII1037; GB:AAB91908.1; protease hypothetical protease	Putative uncharacterized protein gbs2112	hypothetical protein, similar to precessing proteinase	Putative ZINC PROTEASE	identified by match to PFAM protein family HMM PF00675 peptidase, M16 family	Ortholog of S. aureus MRSA252 (BX571856) SAR1255 putative protease	hypothetical protein, similar to precessing proteinase	
HELPY00985	Dihydrodipicolinate synthase	dihydrodipicolinate synthase	Putative dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	similar to AX063773-1|CAC25128.1| percent identity: 88 in 301 aa dihydrodipicolinate synthase	Dihydrodipicolinate synthase	dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase 1	Dihydrodipicolinate synthase 1	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Residues 7 to 298 of 298 are 100 pct identical to residues 1 to 292 of a 292 aa protein from Escherichia coli K12 ref: NP_416973.1 dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	
HELPY00986	7-alpha-hydroxysteroid dehydrogenase	Putative Short chain dehydrogenase	Short-chain dehydrogenase/reductase SDR	7 alpha-hydroxysteroid dehydrogenase	7-alpha-hydroxysteroid dehydrogenase (Q8CPI3) 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase) High confidence in function and specificity	7-alpha-hydroxysteroid dehydrogenase	7-alpha-hydroxysteroid dehydrogenase	7 alpha-hydroxy steroid dehydrogenase	7-alpha-hydroxysteroid dehydrogenase	Oxidoreductase, short chain dehydrogenase/reductase family	7 alpha-hydroxysteroid dehydrogenase	
HELPY00987	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00988	Phosphatidylglycerophosphate synthase	Putative phosphatidylglycerophosphate synthase	Putative phosphatidylglycerophosphate synthase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	Phosphatidylglycerophosphate synthase	Phosphatidylglycerophosphate synthase	CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3- PHOSPHATIDYLTRANSFERASE	Phosphatidylglycerophosphate synthase	Putative phosphotidylglycerophosphate synthase	CDP-diacylglycerol-glycerol-3-phosphate 3- phosphatidyltransferase	Putative phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDS_ID OB1622 phosphatidylglycerophosphate synthase	CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3- PHOSPHATIDYLTRANSFERASE	similar to AJ312005-1|CAC84779.1| percent identity: 81 in 206 aa phosphatidylglycerophosphate synthase	Putative phosphatidylglycerophosphate synthase	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate3- phosphatidyltransferase	Phosphatidylglycerophosphate synthase	Phosphatidylglycerophosphate synthase	Phosphatidylglycerophosphate synthase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	SC7C7.08, pgsA, probable phosphatidylglycerophosphate synthase, len: 263 aa; integral membrane protein similar to many e.g. PGSA_BACSU CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (193 aa), fasta scores; opt: 304 z-score: 312.1 E(): 3.8e-10, 38.0% identity in 187 aa overlap. Contains PS00379 CDP-alcohol phosphatidyltransferases signature. FramePlot suggests start site at V40, similarities start downstream of this.  Upstream start site chosen by HMM, corroborated by RBS.  Contains possible hydrophobic membrane spanning regions phosphatidylglycerophosphate synthase	Phosphatidylglycerophosphate synthase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	Phosphatidylglycerophosphate synthase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	Lin1433 protein	
HELPY00989	Amino acid permease	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark S-methylmethionine permease	Putative uncharacterized protein gbs1378	S-methylmethionine permease	Amino acid permease	identified by match to PFAM protein family HMM PF00324 amino acid permease	identified by match to protein family HMM PF00324 amino acid transporter, AAT family	similar to gi|45533082|ref|ZP_00184076.1| [Exiguobacterium sp. 255-15], percent identity 53 in 455 aa, BLASTP E(): e-139 putative amino acid permease	amino acid transporter family protein	amino acid permease	S-methylmethionine permease identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	amino acid permease (Q47689) Probable S-methylmethionine permease High confidence in function and specificity	amino acid permease-associated region PFAM: amino acid permease-associated region KEGG: bld:BLi00265 similar to histidine permease; RBL01520	Putative APC family S-methylmethionine transporter	Putative amino acid permease	Amino acid permease-associated region	amino acid transport protein	Amino acid permease-associated region	S-methylmethionine permease	Amino acid transporter	Putative APC family, S-methylmethionine transporter	Amino-acid permease rocE	Amino acid transporter	Amino acid permease	Amino acid transport protein	S-methylmethionine permease	Putative APC family, S-methylmethionine transporter	Amino acid permease-associated region	lysine-specific permease	
HELPY00991	Serine protease	Protease DO	similar to AE001732-1|AAD35656.1| percent identity: 30 in 287 aa putative periplasmic serine protease	serine protease, HtrA/DegQ/DegS family	Trypsin domain/PDZ domain protein	Serine protease Do	Probable serine protease do-like	Residues 1 to 474 of 474 are 99 pct identical to residues 1 to 474 of a 474 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285857.1 periplasmic serine protease Do; heat shock protein HtrA	Htra-like serine protease signal peptide protein	Similar to serine proteinase Do	DegQ protein	Probable htra-like serine protease signal peptide protein	Protease DegQ	Serine protease HtrA	identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595 protease DO	Serine protease DO-like protein	Serine protease	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark protease DO	Serine protease	Serine protease do-like htrA	IPR001478: PDZ/DHR/GLGF domain; IPR001940: Peptidase S1C, HtrA/DegQ protease periplasmic serine protease Do, heat shock protein	similar to Salmonella typhi CT18 protease DO precursor; heat shock protein HtrA protease DO precursor; heat shock protein HtrA	Similar to Escherichia coli, and Escherichia coli O157:H7 protease Do precursor DegP or HtrA or Ptd or B0161 or Z0173 or ECS0165 SWALL:DEGP_ECOLI (SWALL:P09376) (474 aa) fasta scores: E(): 3.9e-48, 37.65% id in 494 aa, and to Chlorobium tepidum serine protease CT1447 SWALL:Q8KCH4 (EMBL:AE012902) (505 aa) fasta scores: E(): 3.3e-60, 41.44% id in 444 aa putative heat shock-related exported protease	Serine protease	Putative uncharacterized protein gbs2133	hypothetical protein, similar to serine proteinase Do, heat-shock protein htrA	PROTEASE DO	identified by match to PFAM protein family HMM PF00089 serine protease	Periplasmic serine protease Do, heat shock protein	
HELPY00992	Bifunctional enzyme ispD/ispF	hypothetical protein	Bifunctional enzyme ispD/ispF	Bifunctional enzyme ispD/ispF	Bifunctional enzyme ispD/ispF	hypothetical protein	identified by similarity to GB:AAN30040.1; match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453 ispD/ispF bifunctional enzyme	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Bifunctional enzyme ispD/ispF	similar to BR1120, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/4-diphosphocytidyl-2C-methyl-D-erythritol synthase 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/4-diphosphocytidyl-2C-methyl-D-erythritol synthase	Bifunctional enzyme ispD/ispF	IspD/ispF bifunctional enzyme	COG0245 bifunctional enzyme 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Fusion protein. N-terminal region similar to Streptomyces coelicolor 2-c-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD or SCO4233 or SCD8A.06 SWALL:ISPD_STRCO (SWALL:Q9L0Q8) (270 aa) fasta scores: E(): 1.5e-12, 36.05% id in 233 aa Full length similarity to Rhizobium meliloti IspD/IspF bifunctional enzyme [includes: 2-c-methyl-D-erythritol 4- phosphate cytidylyltransferase ispdf or r01456 or smc01040 SWALL:ISDF_RHIME (SWALL:Q92Q90) (434 aa) fasta scores: E(): 5.7e-11, 28.7% id in 425 aa. C-terminal region similar to Escherichia coli 2-c-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF or MecS or b2746 or z4054 or ecs3600 SWALL:ISPF_ECOLI (SWALL:P36663) (159 aa) fasta scores: E(): 3.9e-10, 35.52% id in 152 aa putative terpenoid biosynthesis bifunctional enzyme	bifunctional enzyme; IspF IspD	Includes: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; similar to Swiss-Prot Accession Number Q9PM68 IspD/ispF bifunctional enzyme	4-diphosphocytidyl-2C-methyl-D-erythritol synthase	4-diphosphocytidyl-2C-methyl-D-erythritol synthase:YgbB	Bifunctional enzyme ispD/ispF	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Bifunctional enzyme ispD/ispF	putative IspD/IspF bifunctional enzyme similarity:fasta; with=UniProt:ISPDF_RHOCA (EMBL:RCNIFR3); Rhodobacter capsulatus (Rhodopseudomonas capsulata).; ispDF; IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C- methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) (MECPS) (MECDP-synthase)].; length=379; id 47.970; 394 aa overlap; query 10-400; subject 1-377 similarity:fasta; with=UniProt:ISPDF_RHIME (EMBL:SME591787); Rhizobium meliloti (Sinorhizobium meliloti).; ispDF; IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C- methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) (MECPS) (MECDP-synthase)].; length=410; id 71.322; 401 aa overlap; query 4-404; subject 1-401	bifunctional enzyme, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, 4-diphosphocytidyl-2C-methyl-D-erythritol synthase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase: (4.5e-74) PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase: (4.5e-76) MECDP-synthase: (4.1e-74) KEGG: sil:SPO2090 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, ev=1e-151, 69% identity	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol2, 4-cyclodiphosphate synthase protein similar to ispDF (SMc01040) [Sinorhizobium meliloti] Similar to entrez-protein:Q92Q90 Putative location:bacterial inner membrane Psort-Score: 0.0736; go_function: transferase activity [goid 0016740]; go_function: nucleotidyltransferase activity [goid 0016779]; go_function: catalytic activity [goid 0003824]; go_function: lyase activity [goid 0016829]; go_function: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase activity [goid 0008699]; go_function: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [goid 0050518]; go_process: isoprenoid biosynthesis [goid 0008299]; go_process: terpenoid biosynthesis [goid 0016114]	
HELPY00993	Response regulator	Putative uncharacterized protein	Putative TRANSCRIPTIONAL REGULATOR	Response regulator receiver domain protein	response regulator	response regulator receiver domain protein identified by match to protein family HMM PF00072	two component response regulator (P45337) Transcriptional regulatory protein qseB Specificity unclear	DNA-binding response regulator, putative identified by match to protein family HMM PF00072	Two-component response regulator	Two-component response regulator	Putative DNA-binding response regulator	DNA-binding response regulator, putative	Two-component response regulator	Cation-efflux system membrane protein	Response regulator receiver domain protein	Response regulator	Response regulator	Response regulator receiver domain protein	Putative uncharacterized protein	Two component response regulator	Putative two-component response regulator	
HELPY00994	Putative uncharacterized protein	DNA-polymerase I-like 5'-3' exonuclease	putative DNA polymerase I (Q9KAV6) Probable 5-3 exonuclease (EC 3.1.11.-) Function unclear	Putative uncharacterized protein	DNA-polymerase I-like 5'-3' exonuclease	DNA-polymerase I-like 5'-3' exonuclease	
HELPY00995	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY00996	Co-chaperone-curved DNA binding protein A	identified by similarity to SP:P17631; match to protein family HMM PF00226; match to protein family HMM PF01556 co-chaperone protein DnaJ	Curved DNA-binding protein CbpA	Putative co-chaperone with DnaK	Similar to CAD85066 (Q82VD9) DnaJ N-terminal domain:DnaJ C terminal domain from Nitrosomonas europaea (314 aa). FASTA opt: 800 Z-score: 823.9 E(): 4.8e-38 39.482 identity in 309 aa overlap. heat shock protein, hsp40	Similar to Streptomyces coelicolor chaperone protein DnaJ or SCO3669 or SCH44.09c SWALL:DNAJ_STRCO (SWALL:P40170) (399 aa) fasta scores: E(): 3.5e-17, 30.82% id in 399 aa, and to Escherichia coli curved DNA-binding protein CbpA or b1000 SWALL:CBPA_ECOLI (SWALL:P36659) (306 aa) fasta scores: E(): 1.5e-20, 40.19% id in 301 aa, and to Escherichia coli chaperone protein DnaJ or GroP or b0015 SWALL:DNAJ_ECOLI (SWALL:P08622) (375 aa) fasta scores: E(): 5.1e-13, 31.32% id in 348 aa molecular chaperone DnaJ	Heat shock protein DnaJ-like	transcript_id=ENSDNOT00000018343	putative curved DNA-binding protein similarity:fasta; SWALL:CBPA_ECOLI (SWALL:P36659); Escherichia coli; curved DNA-binding protein; CbpA; b1000;; length 306 aa; 318 aa overlap; query 3-301 aa; subject 4-302 aa similarity:fasta; SWALL:Q930Y5 (EMBL:AE007200); Rhizobium meliloti; putative DNAJ/cbpa-type protein; name=sma0116; orderedlocusnames=ra0059;; length 318 aa; 302 aa overlap; query 1-302 aa; subject 14-314 aa	chaperone DnaJ	co-chaperone-curved DNA binding protein A	heat shock protein, hsp40 Similar to CAD85066 (Q82VD9) DnaJ N-terminal domain:DnaJ C terminal domain from Nitrosomonas europaea (314 aa). FASTA opt: 800 Z-score: 823.9 E(): 4.8e-38 39.482 identity in 309 aa overlap.	transcript_id=ENSFCAT00000008730	transcript_id=ENSEEUT00000001885	co-chaperone protein DnaJ identified by match to protein family HMM PF00226; match to protein family HMM PF01556	co-chaperone-curved DNA binding protein A High confidence in function and specificity	putative chaperone protein DnaJ identified by similarity to SP:P42381; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556	Chaperone DnaJ	co-chaperone protein DnaJ identified by match to protein family HMM PF00226; match to protein family HMM PF01556	heat shock protein, hsp40	subunit of DnaJ/DnaK/GrpE: chaperone with DnaK; heat shock protein	Chaperone protein Dna J	heat shock protein DnaJ-like PFAM: heat shock protein DnaJ-like chaperone DnaJ-like KEGG: mlo:mlr7456 heat shock protein DnaJ	Co-chaperone protein DnaJ	Chaperone protein with DnaJ domain	Putative curved-DNA binding protein	Curved DNA-binding protein CbpA	Protein translation intiation inhibitor	Chaperone protein Dna J	
HELPY00997	Putative heat shock protein	Putative chaperone locus transcriptional regulator, HspR	similar to AL583925-135|CAC32010.1| percent identity: 58 in 114 aa putative heat shock protein HspR	Heat shock protein	Heat shock regulator	Probable transcriptional regulator, MerR family	identified by match to protein family HMM PF00376 transcriptional regulator, MerR family	HspR	PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REPRESSOR HSPR	Mb0361, hspR, len: 126 aa. Equivalent to Rv0353, len: 126 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 126 aa overlap). Probable hspR, heat shock regulatory protein, merR family, highly similar to others e.g. HspR|P40183 heat shock regulatory protein from Streptomyces coelicolor (151 aa), FASTA scores: E(): 4.9e-22, (55.7% identity in 140 aa overlap), that binds to three inverted repeats (IR1-IR3) in the promoter region of the dnaK operon. Has possible coiled coil region in C-terminal half. BELONGS TO THE MERR FAMILY OF TRANSCRIPTIONAL REGULATORS. PROBABLE HEAT SHOCK PROTEIN TRANSCRIPTIONAL REGULATOR HSPR (MERR FAMILY)	InterProMatches:IPR000551; negative regulation of the glutamine synthetase gene (glnA), Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355) transcriptional regulator	Putative heat shock transcriptional regulator	Putative TRANSCRIPTIONAL REGULATOR	Similar to Streptomyces coelicolor putative heat shock protein HspR or SCO3668 or SCH44.08c SWALL:HSPR_STRCO (SWALL:P40183) (151 aa) fasta scores: E(): 2.6e-11, 40.15% id in 132 aa, and to Streptomyces albus G HspR SWALL:P96458 (EMBL:U43299) (154 aa) fasta scores: E(): 5.6e-10, 39.41% id in 137 aa heat shock regulator protein HspR	transcriptional regulator, MerR family	heat shock protein regulator HspR	identified by similarity to SP:P40183 HspR protein, putative	putative transcriptional regulator, MerR family	Transcriptional regulator, MerR family	transcriptional regulator, MerR family PFAM: regulatory protein, MerR KEGG: ttj:TTHA0508 transcriptional regulator, MerR family	putative heat shock protein	Transcriptional regulator, MerR family	Transcriptional regulator, MerR family	transcriptional regulator, MerR family PFAM: regulatory protein, MerR KEGG: aba:Acid345_0975 transcriptional regulator, MerR family	putative heat shock protein HspR identified by match to protein family HMM PF00376	HspR protein identified by match to protein family HMM PF00376	Regulatory protein, MerR	heat shock transcriptional regulator (P45277) HTH-type transcriptional regulator zntR homolog High confidence in function and specificity	transcriptional regulator, MerR family PFAM: regulatory protein, MerR KEGG: lxx:Lxx23750 heat shock protein	
HELPY00998	Conserved hypothetical helicase-like protein	hypothetical conserved protein	Putative AAA ATPase	Putative chromosome segregation helicase	ATPase, AAA family protein	Uncharacterized ATPase related to the helicase subunit of the holliday junction resolvase	Predicted ATPase	ATPase associated with chromosome architecture/replication	ATPase	Putative ATPase	Putative uncharacterized protein VP1107	Putative uncharacterized protein	Replication-associated recombination protein A	CDS_ID OB2017 hypothetical protein	similar to AL583918-123|CAC30018.1| percent identity: 68 in 446 aa conserved hypothetical protein	Putative uncharacterized protein	hypothetical protein	ATPase, AAA family	Putative uncharacterized protein	Replication-associated recombination protein A	AAA ATPase	ATPase related to the helicase subunit	BH1257 protein	Putative helicase subunit of Holliday junction resolvase	ATPase, AAA family	SC9C5.30c, conserved ATP/GTP binding protein, len: 451 aa; similar to SW:Y0A9_MYCTU (EMBL:Z77250) Mycobacterium tuberculosis hypothetical 47.5 kD protein MTCY9C4.09, 452 aa; fasta scores: opt: 1742 z-score: 1796.7 E(): 0; 64.4% identity in 430 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) conserved ATP/GTP binding protein	Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase	ATPase-like protein	Lin1549 protein	
HELPY00999	Ferric uptake regulation protein	Putative ferric uptake regulator	Ferric uptake regulator	Metal uptake regulation protein	Ferric uptake regulation protein	Ferric uptake regulation protein	Putative ferric uptake regulatory protein	Ferric uptake regulation protein	similar to AE000739-6|AAC07373.1| percent identity: 30 in 138 aa putative ferric uptake regulation protein	Ferric uptake regulation protein	Transcriptional regulator, FUR family; probable FUR protein	Ferric uptake regulation protein	Transcriptional regulator	SCC121.11, probable metal uptake regulation protein, len: 139 aa; similar to TR:O05839 (EMBL:Z95208) Mycobacterium tuberculosis cosmid Y27 Fur, 130 aa; fasta scores: opt: 546 z-score: 663.0 E(): 1.5e-29; 61.8% identity in 123 aa overlap and to SW:FUR_NEIGO (EMBL:L11361) Neisseria gonorrhoeae ferric uptake regulation protein (ferric uptake regulator) Fur, 144 aa; fasta scores: opt: 273 z-score: 339.0 E(): 1.7e-11; 35.5% identity in 110 aa overlap. Contains Pfam match to entry PF01475 FUR putative metal uptake regulation protein	Fe2+/Zn2+ uptake regulation proteins	Ferric uptake regulation protein	Fur protein	Iron response regulator	Transcriptional regulator	Residues 1 to 148 of 148 are 98 pct identical to residues 1 to 148 of a 148 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286398.1 negative regulator	Ferric uptake regulation protein	Leucine-rich repeat:Ferric uptake regulator family	Probable ferric uptake transcriptional (Fur)- related transcription regulator protein	Ferric uptake transcription regulator	Ferric uptake regulation protein	Ferric uptake regulation protein	identified by match to protein family HMM PF01475 transcriptional regulator, Fur family	Ferric uptake regulation protein	Transcriptional regulator	
HELPY01000	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01001	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein (P37673) Hypothetical protein yiaL Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01002	FliY protein	Flagellar protein FliY	FLAGELLAR MOTOR SWITCH PROTEIN	identified by similarity to SP:P24073; match to protein family HMM PF01052; match to protein family HMM PF04509; match to protein family HMM TIGR02480 flagellar motor switch protein	Flagellar motor switch FliN	fliY protein	flagellar motor switch protein identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480	flagellar motor switch protein (Q51466) Flagellar motor switch protein fliN High confidence in function and specificity	flagellar motor switch protein identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480	Flagellar motor switch protein FliN	Flagellar motor switch protein	Putative flagellar motor switch protein	Flagellar motor switch protein FliY	Iron chelatin ABC transporter, substrate binding protein	Flagellar motor switch protein	CheC, inhibitor of MCP methylation , FliN fusion protein	CheC, inhibitor of MCP methylation	Flagellar motor switch protein FliY	Flagellar motor switch protein	Flagellar protein FliY	Flagellar motor switch protein FliY	Flagellar motor switch phosphatase FliY	FliY protein	Flagellar motor switch protein FliY	CheC, inhibitor of MCP methylation	CheC, inhibitor of MCP methylation , FliN fusion protein	Flagellar motor switch protein FliN	
HELPY01003	Flagellar motor switch protein	Flagellar motor switch protein FliM	Flagellar motor switch protein FliM	Flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction	CDS_ID OB1567 flagellar motor switch protein	Flagellar motor switch protein FliM	Possible flagellar motor switch protein FliM	Flagellar switch protein FliM	Flagellar motor switch protein	Flagellar motor switch protein	Polar flagellar switch protein	Lin0707 protein	FliM	Residues 16 to 349 of 349 are 99 pct identical to residues 1 to 334 of a 334 aa protein from Escherichia coli O157:H7 ref: NP_310711.1 flagellar motor switch protein FliM	Flagellar motor switch protein FliM	Flagellar motor switch protein FliM	Probable flagellar motor switch protein flim	Flagellar motor switch protein FliM	Flagellar motor switch protein FliM	conserved gene flagellar protein	Flagellar motor switch protein FliM	Flagellar motor switch protein	identified by similarity to SP:P23453; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 flagellar motor switch protein FliM	InterProMatches:IPR001689; Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Biological Process: chemotaxis (GO:0006935), Cellular Component: flagellar basal body (sensu Bacteria) (GO:0009425) flagellar motor switch protein	flagellar motor switch protein FliM	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar protein	IPR001689: Flagellar motor switch protein FliM flagellar biosynthesis, component of motor switch and energizing	similar to Salmonella typhi CT18 flagellar motor switch protein FliM flagellar motor switch protein FliM	Flagellar motor switch protein FliM	
HELPY01004	Alternative transcription initiation factor, sigma-F	Flagellar-specific RNA polymerase sigma factor FliA	RNA polymerase sigma factor for flagellar operon	CDS_ID OB1582 RNA polymerase sigma-D factor	RNA polymerase sigma-27 factor	Sigma factor of SigD/WhiG family	RNA polymerase, sigma factor	SC2E1.38, whiG, RNA polymerase sigma factor WhiG, len: 280 aa; identical to RPSW_STRCO RNA polymerase sigma factor WhiG (280 aa). Also highly similar to RPSD_BACSU RNA polymerase sigma-D factor (sigma-28) (254 aa)(E(): 0, 43.0% identity in 242 aa overlap) and FLIA_ECOLI RNA polymerase sigma factor for flagellar operon (sigma F) (239 aa)(E(): 0, 42.8% identity in 229 aa overlap).  Contains PS00715 and PS00716 Sigma-70 factors family signatures 1 and 2, Pfam match to entry sigma70 PF00140, Sigma-70 factors, score 342.03 and probable helix-turn-helix motif at aa 245 to 266 (Score 1657, +4.83 SD) RNA polymerase sigma factor WhiG	RNA polymerase sigma factor	Flagellar-specific RNA polymerase sigma factor	RNA polymerase sigma factor	similar to Escherichia coli K12 flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons gi: 1788231 (240 aa). BLAST with identity of 98% in 239 aa. This CDS ontains frameshift.  The sequence has been checked and is believed to be correct. pseudo	Sigma-28/WhiG Family	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor	sigma factor 28	sigma factor 28	identified by similarity to SP:P31804; match to protein family HMM PF04542; match to protein family HMM PF04545 RNA polymerase sigma factor, sigma-F	InterProMatches:IPR000943; regulon includes genes involved in flagellar synthesis, motility, chemotaxis, autolysis,Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352) RNA polymerase sigma-28 factor (sigma-D)	DNA-directed RNA polymerase sigma-28 factor sigma-D	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark RNA polymerase sigma factor FliA	IPR000943: Sigma-70 factor family sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons)	similar to Salmonella typhi CT18 RNA polymerase sigma transcription factor for flagellar operon RNA polymerase sigma transcription factor for flagellar operon	Similar to many including: Streptomyces coelicolor RNA polymerase sigma factor WhiG or sco5621 or sc2e1.38 SWALL:RPSW_STRCO (SWALL:P17211) (280 aa) fasta scores: E(): 5.2e-30, 38.71% id in 248 aa and Streptomyces coelicolor RNA polymerase sigma factor SWALL:Q59836 (EMBL:J03169) (258 aa) fasta scores: E(): 2e-30, 37.89% id in 256 aa putative RNA polymerase sigma factor	RNA polymerase sigma 28 factor	RNA polymerase sigma factor	RNA POLYMERASE SIGMA FACTOR	
HELPY01005	Putative uncharacterized protein	
HELPY01006	ATP-binding protein	Flagellar biosynthesis protein FlhG	CDS_ID OB1577 hypothetical protein	Flagellar synthesis regulator FleN	ATPases involved in chromosome partitioning, MinD family, YLXH B.subtilis ortholog	BH2436 protein	ATPases involved in chromosome partitioning	Flagellar biosynthesis MinD-related protein	Septum site-determining protein	Putative MinD-related protein	similar to flagellar synthesis regulator hypothetical protein	conserved gene flagellar biosynthesis MinD	similar to flagellar synthesis regulator hypothetical protein	identified by similarity to GP:6952812; match to protein family HMM PF00991 ATPase, ParA family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar biosynthesis switch protein	Putative uncharacterized protein	Flagellar biosynthesis switch protein	Putative	MinD-related ATP-binding protein	COG0455 flagellar synthesis regulator	flagellar synthesis regulator FleN	Flagellar number regulator FleN	ATPase; FleN Antiactivator of flagellar biosynthesis	flagellar biosynthesis switch protein	identified by similarity to GP:6952812; match to protein family HMM PF01656 flagellar biosynthetic protein FlhG	identified by similarity to GB:AAF24747.1; match to protein family HMM PF01656 flagellar synthesis regulator FleN	identified by match to protein family HMM PF01656 flagellar synthesis regulator FleN PA1454	Cobyrinic acid a,c-diamide synthase	identified by similarity to GB:AAC62540.2; match to protein family HMM PF01656 putative flagellar biosynthesis protein	
HELPY01007	Flagellar biosynthesis protein flhF	Lin0689 protein	Flagellar GTP-binding protein	Cell division protein FtsY	identified by similarity to SP:Q01960; match to protein family HMM PF00448 flagellar biosynthetic protein FlhF	Cell division protein FtsY	Flagellar GTP-binding protein FlhF	Putative uncharacterized protein gbs0749	Flagellar biosynthesis protein flhF	identified by match to PFAM protein family HMM PF00448 signal recognition particle-docking protein FtsY	identified by similarity to SP:Q01960; match to protein family HMM PF00448 flagellar biosynthesis protein FlhF, putative	GTP-binding signal recognition particle SRP54, G- domain	GTP-binding flagellar biosynthesis protein	Signal renition particle GTPase	signal recognition particle-docking protein FtsY identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064	flagellar biosynthesis protein identified by match to protein family HMM PF00448	flagellar biosynthesis protein (O25679) Flagellar biosynthesis protein flhF (Flagella associated GTP-binding protein) High confidence in function and specificity	Signal recognition particle-docking protein	SRPR, signal recognition particle-docking protein, putative	Signal recognition particle GTPase	Complete genome	flagellar biosynthetic protein FlhF identified by match to protein family HMM PF00448	Signal recognition particle GTPase	Flagellar biosynthetic protein FlhF	GTP-binding signal recognition particle SRP54, G- domain	Flagellar biosynthesis protein	Flagellar biosynthesis (GTP-binding) protein FlhF	Signal recognition particle-docking protein FtsY	ATP-dependent DNA helicase RecG	
HELPY01008	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	Putative hydroxymethyldihydropteridine pyrophosphokinase	2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE PYROPHOSPHOKINASE	Putative 2-amino-4-hydroxy-6- hydroxymethylpteridine pyrophosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	Putative 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase	7, 8-dihydro-6-hydroxymethylpterin- pyrophosphokinase	CDS_ID OB0087 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase	Putative multifunctional folic acid synthesis protein	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	Putative 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	SCE9.08, folK, probable hydroxymethyldihydropteridine pyrophosphokinase, len: 203 aa; similar to many e.g. SW:HPPK_ECOLI (EMBL:L06495), FolK, Escherichia coli 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (158 aa), fasta scores; opt: 351 z-score: 426.9 E(): 1.9e-16, 42.0% identity in 138 aa overlap. Putative start codon suggested by GC frame plot and the presence of a potential RBS, resulting in a short N-terminal extension not present in homologs. There is an alternative start codon at position 17. Contains Pfam match to entry PF01288 HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK), score 145.80, E-value 7.5e-40 putative hydroxymethyldihydropteridine pyrophosphokinase	7, 8-dihydro-6-hydroxymethylpterin- pyrophosphokinase	7, 8-dihydro-6-hydroxymethylpterin- pyrophosphokinase	FolK protein	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	Residues 1 to 159 of 159 are 94 pct identical to residues 1 to 159 of a 159 aa protein from Escherichia coli K12 ref: NP_414684.1 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokina se	2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase	FolK protein	Probable 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase ,8-dihydro- 6-hydroxymethylpterin-pyrophosphokinase protein	Similar to 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase hypothetical protein	conserved gene 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK	
HELPY01009	Putative uncharacterized protein	Xaa-Pro dipeptidase	Putative peptidase	Putative aminopeptidase P, Xaa-Pro aminopeptidase	Aminopeptidase P	XAA-PRO dipeptidase	Putative aminopeptidase P	Putative metallopeptidase	Putative peptidase	CDS_ID OB1896 Xaa-Pro dipeptidase	XAA-PRO AMINOPEPTIDASE	similar to AX065749-1|CAC26114.1| percent identity: 86 in 363 aa putative cytoplasmic peptidase	Putative X-Pro dipeptidase	Xaa-Pro aminopeptidase	Xaa-Pro dipeptidase	Xaa-Pro-dipeptidase	Peptidase/creatianse family protein	SC9C5.16c, possible peptidase, len: 368 aa; similar to TR:Q9X842 (EMBL:AL049727) Streptomyces coelicolor putative dipeptidase SC9B1.23, 376 aa; fasta scores: opt: 552 z-score: 631.8 E(): 1e-27; 33.8% identity in 370 aa overlap. Contains Pfam match to entry PF00557 Peptidase_M24, metallopeptidase family M24 putative peptidase	Xaa-Pro aminopeptidase	Uncharacterized peptidase SAV1708	PepP	Xaa-Pro aminopeptidase	XAA-PRO aminopeptidase	Xaa-Pro dipeptidase	aminopeptidase P; XAA-pro aminopeptidase	Xaa-Pro dipeptidase	xaa-Pro aminopeptidase; Biological Process: proteolysis and peptidolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235) Peptidase M24B, X-Pro dipeptidase YqhT	Xaa-Pro dipeptidase	COG0006 Xaa-Pro aminopeptidase X-Pro dipeptidase	
HELPY01010	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	Putative 3-dehydroquinate dehydratase	3-dehydroquinate dehydratase, type II	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	similar to AL646071-180|CAD16492.1| percent identity: 57 in 141 aa 3-dehydroquinate dehydratase	unknown protein	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	identified by similarity to SP:P15474; match to protein family HMM PF01220; match to protein family HMM TIGR01088 3-dehydroquinate dehydratase, type II	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	identified by similarity to SP:Q48255; match to protein family HMM PF01220; match to protein family HMM TIGR01088 3-dehydroquinate dehydratase, type II	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase, type II	3-dehydroquinate dehydratase	Mb2566c, aroD, len: 147 aa. Equivalent to Rv2537c, len: 147 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 147 aa overlap). aroD (alternate gene name: aroQ), 3-dehydroquinate dehydratase (EC 4.2.1.10) (see citation below), equivalent to Q9CCS3|AROD|ML0519 3-DEHYDROQUINATE DEHYDRATASE from Mycobacterium leprae (145 aa), FASTA scores: opt: 803, E(): 3.4e-46, (85.9% identity in 142 aa overlap). Also highly similar to many e.g. P96750|AROQ_CORPS from Corynebacterium pseudotuberculosis (146 aa), FASTA scores: opt: 559, E(): 4.1e-30, (61.05% identity in 136 aa overlap); Q9K949|BH2801 from Bacillus halodurans (145 aa), FASTA scores: opt: 453, E(): 4e-23, (52.15% identity in 138 aa overlap); P54517|AROQ_BACSU|YQHS from Bacillus subtilis (148 aa), FASTA scores: opt: 419, E(): 7.1e-21, (45.3% identity in 139 aa overlap); etc. Contains PS01029 Dehydroquinase class II signature. BELONGS TO THE TYPE-II 3-DEHYDROQUINASE FAMILY. 3-DEHYDROQUINATE DEHYDRATASE AROD (3-DEHYDROQUINASE) (TYPE II DHQASE)	Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855), Biological Process: aromatic amino acid family biosynthesis (GO:0009073) 3-dehydroquinate dehydratase YqhS	3-dehydroquinate dehydratase	3-dehydroquinate dehydratase	similar to BR0908, 3-dehydroquinate dehydratase, type II AroQ, 3-dehydroquinate dehydratase, type II	
HELPY01011	Putative uncharacterized protein	Putative	O-antigen ligase	Lipid A core - O-antigen ligase and related enzymes RfaL protein	lipid A-core surface polymer ligase	hypothetical protein	O-antigen polymerase	O-antigen polymerase precursor	conserved hypothetical protein (P27243) O-antigen ligase Function unclear	Putative uncharacterized protein	Hypothetical protein	O-antigen polymerase	Putative uncharacterized protein	Putative O-antigen polymerase	O-antigen polymerase	O-antigen polymerase precursor	O-antigen polymerase	O-antigen polymerase	Putative uncharacterized protein	O-antigen polymerase	O-antigen polymerase	Putative uncharacterized protein	Putative uncharacterized protein	O-antigen polymerase	O-antigen ligase WaaL	Putative uncharacterized protein	O-antigen polymerase	Lipid A-core surface O-antigen ligase	Putative uncharacterized protein	
HELPY01012	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	CDS_ID OB1603 30S ribosomal protein S15	30S ribosomal protein S15	similar to AL008967-50|CAA15580.1| percent identity: 78 in 89 aa putative 30S ribosomal protein S15	30S ribosomal protein S15	ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	
HELPY01013	Flagellar biosynthesis protein flhA	Flagellar biosynthesis protein FlhA	Polar flagellar assembly protein FlhA	Flagellar biosynthesis; possible export of flagellar proteins	CDS_ID OB1575 flagella-associated protein	flagellar biosynthesis protein flhA	Flagellar biosynthesis protein FlhA	Putative flagellar export protein FlhA	Flagellar biosynthesis protein FlhA	Flagella-associated protein	Flagellar biosynthesis protein flhA	Flagellar biosynthesis/type III secretory pathway protein	Polar flagellar assembly protein	Lin0688 protein	Flagellar biosynthesis transmembrane protein	Flagellar biosynthesis protein FlhA	Bacterial export FHIPEP family	FlhA protein	Probable flagellar biosynthesis flha transmembrane protein	Flagellar biosynthesis protein FlhA	Flagellar biosynthesis protein flhA	conserved gene flagellar biosynthetic protein FlhA	Flagellar biosynthesis protein flhA	Flagellar biosynthesis protein flhA	identified by similarity to SP:P76298; match to protein family HMM PF00771; match to protein family HMM TIGR01398 flagellar biosynthesis protein FlhA	Flagellar biosynthesis protein FlhA	InterProMatches:IPR006301; required for flagellar formation, Biological Process: protein transport (GO:0015031), Cellular Component: integral to membrane (GO:0016021), Cellular Component: flagellum (GO:0019861) flagella-associated protein	flagellar biosynthesis protein FlhA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar protein	
HELPY01014	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein Function unclear	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative phosphoesterase RecJ-like	
HELPY01015	Response regulator	identified by similarity to OMNI:NTL01HP00378; match to protein family HMM PF00072; match to protein family HMM PF00486 DNA-binding response regulator	Putative uncharacterized protein	Putative TRANSCRIPTIONAL REGULATOR	identified by similarity to OMNI:NTL01XA3918; match to protein family HMM PF00072; match to protein family HMM PF00486 DNA-binding response regulator	putative two-component regulator transcriptional regulatory protein similarity:fasta; with=UniProt:Q92RZ4 (EMBL:SME591784); Rhizobium meliloti (Sinorhizobium meliloti).; PUTATIVE TRANSCRIPTION REGULATOR PROTEIN.; length=223; id 87.387; 222 aa overlap; query 1-222; subject 1-222	probable two-component response regulator protein similar to SMc03046 [Sinorhizobium meliloti] and mlr2935 [Mesorhizobium loti] Similar to swissprot:Q92RZ4 Putative location:bacterial cytoplasm Psort-Score: 0.3650; go_function: DNA binding [goid 0003677]; go_function: two-component response regulator activity [goid 0000156]; go_process: regulation of transcription, DNA-dependent [goid 0006355]; go_process: two-component signal transduction system (phosphorelay) [goid 0000160]	putative transcriptional regulator	two-component regulator identified by match to protein family HMM PF00072; match to protein family HMM PF00486	two-component system regulatory protein (P77380) Transcriptional regulatory protein cusR High confidence in function and specificity	DNA-binding response regulator identified by match to protein family HMM PF00072; match to protein family HMM PF00486	Transcriptional activator	two component transcriptional regulator, winged helix family PFAM: transcriptional regulatory protein-like KEGG: mlo:mlr2935 two-component response regulator	Two-component response regulator	DNA-binding response regulator	Two component transcriptional regulator, winged helix family	Two-component regulator	Two-component regulator	Two-component regulator	Two component transcriptional regulator, winged helix family	Two-component regulator	Putative transcriptional regulator	Probable two-component response regulator protein	Putative transcriptional regulator	Two-component regulator	Two component transcriptional regulator, winged helix family	Two-component response regulator	Transcriptional regulator	Two component transcriptional regulator, winged helix family	
HELPY01016	Uncharacterized metallophosphoesterase HP_1044	Putative uncharacterized protein	Ser/Thr protein phosphatase family protein	CDS_ID OB1398 hypothetical protein	Predicted phosphohydrolase	Cytoplasmic membrane protein	identified by similarity to SP:Q9ZM43; match to protein family HMM PF00149 Ser/Thr protein phosphatase family protein	Putative uncharacterized protein yqeD	Putative uncharacterized protein	Hypothetical UPF0151 protein JHP0380	Similar to Clostridium tetani phosphoesterase CTC01157 SWALL:Q895V9 (EMBL:AE015940) (344 aa) fasta scores: E(): 2.8e-10, 25.07% id in 319 aa, and to Campylobacter jejuni hypothetical protein CJ0846 SWALL:Y846_CAMJE (SWALL:Q9PP77) (374 aa) fasta scores: E(): 3.5e-10, 26.81% id in 399 aa putative membrane protein	Predicted phosphohydrolases Hypothetical protein	Calcineurin-like phosphohydrolase	identified by match to protein family HMM PF00149 Ser/Thr protein phosphatase family protein	Metallophosphoesterase	Predicted phosphohydrolases	Metallophosphoesterase	metallophosphoesterase	Metallophosphoesterase	Twin-arginine translocation pathway signal TIGRFAM: Twin-arginine translocation pathway signal: (0.082) PFAM: metallophosphoesterase: (1.4e-18) KEGG: dra:DR2345 hypothetical protein, ev=1e-89, 59% identity	phosphohydrolase	calcineurin-like phosphoesterase identified by match to protein family HMM PF00149	integral membrane protein	Metallophosphoesterase	metallophosphoesterase	phosphohydrolase, MutT family	metallophosphoesterase PFAM: metallophosphoesterase KEGG: ade:Adeh_4026 metallophosphoesterase	cytoplasmic membrane protein identified by match to protein family HMM PF00149	Predicted phosphohydrolase	
HELPY01017	Acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	acetyl-CoA synthase	Acetyl-CoA synthetase	SCH5.26, acsA, acetyl-coenzyme A synthetase, len: 651 aa; strong similarity to many egs. TR:O69635 (EMBL:AL022121) Acs, acetyl-coenzyme A synthetase from Mycobacterium tuberculosis (651 aa) fasta scores; opt: 2850, z-score: 3300.6, E(): 0, (66.0% identity in 639 aa overlap) and SW:ACSA_ECOLI AcsA, acetyl-coenzyme A synthetase from Escherichia coli (652 aa) fasta scores; opt: 2230, z-score: 2582.2, E(): 0, (52.6% identity in 645 aa overlap). Contains PS00455 Putative AMP-binding domain signature and Pfam match to entry PF00501 AMP-binding, AMP-binding enzyme, score 417.30, E-value 1.4e-121. acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	similar to Escherichia coli K12 acetyl-CoA synthetase gi: 1790505 (653 aa). BLAST with identity of 98% in 652 aa. This CDS contains an in-frame stop codon.  The sequence has been checked and is believed to be correct. pseudo	Acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	Highly similar to acetyl-CoA synthetase hypothetical protein	conserved gene acetyl-coenzyme A synthetase	Highly similar to acetyl-CoA synthetase hypothetical protein	acetyl-coenzyme A synthetase	Acetyl-coenzyme A synthetase	Acyl-coenzyme A synthetase	identified by similarity to SP:P27550; match to protein family HMM PF00501 acetyl-coenzyme A synthetase	Acs	Acetate--CoA ligase	Acetyl-coenzyme A synthetase	Mb3691, acs, len: 651 aa. Equivalent to Rv3667, len: 651 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 651 aa overlap). Probable acs, acetyl-coenzyme-A synthetase (EC 6.2.1.1), similar to many e.g. Q9X928|SCH5.26 from Streptomyces coelicolor (651 aa) FASTA scores: opt: 2850, E(): 1.9e-164, (66.05% identity in 639 aa overlap); Q55404|ACSA_SYNY3|ACS|SLL0542 from Synechocystis sp. strain PCC 6803 (653 aa), FASTA scores: opt: 2342, E(): 8.8e-134, (55.15% identity in 649 aa overlap); P31638|ACSA_ALCEU|ACOE from Alcaligenes eutrophus (Ralstonia eutropha) (660 aa), FASTA scores: opt: 2181, E(): 4.6e-124, (52.05% identity in 665 aa overlap); P27550|ACSA_ECOLI|ACS|B4069 from Escherichia coli strain K12 (652 aa), FASTA scores: opt: 1625, E(): 0, (48.3% identity in 646 aa overlap); etc. Contains PS00455 Putative AMP-binding domain signature. BELONGS TO THE ATP-DEPENDENT AMP-BINDING ENZYME FAMILY. ACETYL-COENZYME A SYNTHETASE ACS (ACETATE--CoA LIGASE) (ACETYL-CoA SYNTHETASE) (ACETYL-CoA SYNTHASE) (ACYL-ACTIVATING ENZYME) (ACETATE THIOKINASE) (ACETYL-ACTIVATING ENZYME) (ACETATE--COENZYME A LIGASE) (ACETYL-COENZYME A SYNTHASE)	IPR000873: AMP-dependent synthetase and ligase; IPR002048: Calcium-binding EF-hand acetyl-CoA synthetase	similar to Salmonella typhi CT18 acetyl-coenzyme A synthetase acetyl-coenzyme A synthetase	similar to BR1811, acetyl-CoA synthetase acetyl-CoA synthetase	Acetyl-coenzyme A synthetase	
HELPY01018	Ribosome maturation factor rimP	Ribosome maturation factor rimP	Ribosome maturation factor rimP	CDS_ID OB1594 hypothetical protein	Ribosome maturation factor rimP	Ribosome maturation factor rimP	Ribosome maturation factor rimP	Ribosome maturation factor rimP	Residues 3 to 154 of 154 are 99 pct identical to residues 1 to 152 of a 152 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289746.1 orf, conserved hypothetical protein	UPF0090 protein YPO3498/y0686/YP_0585	Ribosome maturation factor rimP	Ribosome maturation factor rimP	identified by similarity to OMNI:NTL01SA1148; match to protein family HMM PF02576 conserved hypothetical protein	Hypothetical UPF0090 protein SE0941	identified by similarity to SP:Q9ZM44; match to protein family HMM PF02576 conserved hypothetical protein	Ribosome maturation factor rimP	conserved hypothetical protein	conserved hypothetical protein	hypothetical protein	IPR003728: Protein of unknown function DUF150 Hypothetical protein yhbC	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Ribosome maturation factor rimP	conserved hypotehtical protein	Hypothetical UPF0090 protein JHP0379	UPF0090 protein YPTB0478	Ortholog of S. aureus MRSA252 (BX571856) SAR1241 conserved hypothetical protein	conserved hypotehtical protein	Ribosome maturation factor rimP	conserved hypothetical protein	
HELPY01019	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	ribosome-binding factor A	ribosome-binding factor A identified by match to protein family HMM TIGR00082	(O25688) Ribosome-binding factor A High confidence in function and specificity	ribosome-binding factor A identified by match to protein family HMM TIGR00082	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factorA	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	
HELPY01020	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	translation initiation factor if-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor	Residues 1 to 882 of 882 are 99 pct identical to residues 1 to 890 of a 890 aa protein from Escherichia coli O157:H7 ref: NP_312076.1 protein chain initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	conserved gene initiation factor IF2-beta (IF-2 gamma, IF-2 alpha)	Translation initiation factor IF-2	identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF02131; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	identified by similarity to SP:P02995; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	Translation initiation factor IF-2	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark protein chain initiation factor IF-2	
HELPY01021	Putative uncharacterized protein	Putative	hypothetical protein	nucleic acid binding transriptional terminator (O66647) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01022	Homoserine kinase	homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	CDS_ID OB0464 homoserine kinase	similar to AX063891-1|CAC25187.1| percent identity: 89 in 306 aa putative homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	SCBAC5H2.25, thrB, homoserine kinase, len: 309 aa; similar to SW:KHSE_CORGL (EMBL:Y00546) Corynebacterium glutamicum homoserine kinase (EC 2.7.1.39) ThrB, 308 aa; fasta scores: opt: 728 z-score: 820.7 E(): 0; 43.3% identity in 275 aa overlap. Contains Pfam match to entry PF00288 GHMP_kinases, GHMP kinases putative ATP-binding proteins and match to Prosite entry PS00627 GHMP kinases putative ATP-binding domain homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	Residues 1 to 310 of 310 are 99 pct identical to residues 1 to 310 of a 310 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285695.1 homoserine kinase	Homoserine kinase	homoserine kinase	Homoserine kinase	Homoserine kinase	Homoserine kinase	identified by similarity to EGAD:8419; match to protein family HMM PF00288; match to protein family HMM TIGR00191 homoserine kinase	homoserine kinase	homoserine kinase	
HELPY01023	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein (Q8RF47) Bifunctional 3-dehydroquinate synthase/phosphatase [Includes: 3-dehydroquinate synthase (EC 4.2.3.4); Unknown phosphatase (EC 3.6.1.-)] Function unclear	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Glycoprotease family	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01024	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	Putative UDP-3-O-[3-hydroxymyristoyl] N- acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosmine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	Putative UDP-3-O-[3-hydroxymyristoyl] N- acetylglucosmine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-o-[3-hydroxymyristoyl ] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	Residues 1 to 305 of 305 are 100 pct identical to residues 1 to 305 of a 305 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285792.1 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	conserved gene UDP-3-O-acyl-N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	identified by similarity to SP:P07652; match to protein family HMM PF03331; match to protein family HMM TIGR00325 UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-acyl-N-acetylglucosamine deacetylase	identified by similarity to SP:P07652; match to protein family HMM PF03331; match to protein family HMM TIGR00325 UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-0-acyl N-acetylglucosamine deacetylase	
HELPY01025	Probable septum site-determining protein minC	Probable septum site-determining protein minC	septum site-directing protein	putative septum site-determining protein (O25693) Probable septum site-determining protein minC High confidence in function and specificity	Putative uncharacterized protein	Septum formation inhibitor	Septum site-directing protein	Putative uncharacterized protein	Probable septum site-determining protein minC	Septum site-determining protein MinC	
HELPY01026	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative peptidase	Peptidase M23B	hypothetical protein	membrane proteins related to metalloendopeptidases	peptidoglycan-specific endopeptidase, M23 family	peptidase M23B PFAM: peptidase M23B KEGG: dvu:DVU1851 peptidase, M23/M37 family	peptidase M23B identified by match to protein family HMM PF01551	peptidase, M23/M37 family	metalloendopeptidase related membrane protein Function unclear	peptidase, M23/M37 family identified by match to protein family HMM PF01551	Peptidase M23B precursor	Peptidase, M23/M37 family	Peptidase, M23/M37 family	Peptidase, M23/M37 family	Putative periplasmic protein	Peptidase, M23/M37 family	Peptidase M23B precursor	Peptidase M23B	Peptidase M23B	Peptidase M23B	Peptidase M23B	Putative uncharacterized protein	Peptidase M23 precursor	Putative uncharacterized protein	Peptidase M23B	Peptidase M23	
HELPY01027	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein with DUF864 domain (O67300) Hypothetical protein AQ_1259 precursor hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01028	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein with DUF864 domain hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01029	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01030	3-methyl-2-oxobutanoate hydroxymethyltransferase	ketopantoate hydroxymethyltransferase (3-methyl-2-oxobutanoate hydroxymethyltransferase)	3-methyl-2-oxobutanoate hydroxymethyltransferase	CDS_ID OB3274 3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	similar to 3-methyl-2-oxobutanoatehydroxymethyltransferase hypothetical protein	conserved gene 3-methyl-2-oxobutanoate hydroxymethyltransferase	similar to 3-methyl-2-oxobutanoatehydroxymethyltransferase hypothetical protein	identified by similarity to EGAD:37747; match to protein family HMM PF02548; match to protein family HMM TIGR00222 3-methyl-2-oxobutanoate hydroxymethyltransferase	identified by match to protein family HMM PF02548; match to protein family HMM TIGR00222 3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	identified by match to protein family HMM PF02548; match to protein family HMM TIGR00222 3-methyl-2-oxobutanoate hydroxymethyltransferase	InterProMatches:IPR003700; Molecular Function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity (GO:0003864), Biological Process: pantothenate biosynthesis (GO:0015940) ketopantoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	Ortholog of S. aureus MRSA252 (BX571856) SAR2677 putative 3-methyl-2-oxobutanoate hydroxymethyltransferase	3-methyl-2-oxobutanoate hydroxymethyltransferase	Citation: Jones et al. (1993) J. Bacteriol.  175:2125-2130 putative Ketopantoate hydroxymethyltransferase	
HELPY01031	Holliday junction ATP-dependent DNA helicase ruvB	holliday junction DNA helicase	holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	CDS_ID OB2036 holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvB	similar to AF038651-5|AAK19840.1| percent identity: 91 in 360 aa holliday junction DNA-helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	RuvB; Holliday branch migration protein	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvB	SCL2.08c, ruvB, holliday junction DNA helicase, len: 357 aa; highly similar to SW:RUVB_MYCTU (EMBL:Z77724) Mycobacterium tuberculosis holliday junction DNA helicase RuvB, 344 aa; fasta scores: opt: 1530 z-score: 1686.9 E(): 0; 68.2% identity in 343 aa overlap and to SW:RUVB_ECOLI (EMBL:X07091) Escherichia coli holliday junction DNA helicase RuvB, 336 aa; fasta scores: opt: 1238 z-score: 1366.4 E(): 0; 54.2% identity in 330 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) holliday junction DNA helicase	
HELPY01032	Sec-independent protein translocase protein tatB homolog	Sec-independent protein translocase protein tatB homolog	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter Sec-independent protein secretion pathway, component B	Similar to: TATB_HAEIN Sec-independent protein translocase protein TatB	sec-independent protein secretion pathway component TatB	Twin-arginine translocation protein, TatB subunit	sec-independent protein translocase protein	Sec-independent protein translocase protein	sec-independent translocase identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410	putative sec-independent protein translocase (Q9ZM58) Sec-independent protein translocase protein tatB homolog High confidence in function and specificity	Sec-independent protein translocase protein TatB	twin-arginine translocation protein, TatB subunit TIGRFAM: twin-arginine translocation protein, TatB subunit KEGG: ppr:PBPRA0120 sec-independent protein translocase protein TatB	Twin-arginine translocation protein, TatB subunit	Sec-independent protein translocase protein TatB	Sec-independent translocase	Sec-independent translocase	Sec-independent protein translocase-like protein TatB	Sec-independent translocase	Twin-arginine translocation protein, TatB subunit	Sec-independent translocase	Sec-independent translocase	Sec-independent protein secretion pathway component	Twin-arginine translocation protein, TatB subunit	Sec-independent translocase	Sec-independent protein translocase-like protein TatB	Sec-independent translocase	Twin-arginine translocation protein, TatB subunit	Sec-independent protein translocase protein	Twin-arginine translocase subunit, sec- independent protein export TatB	
HELPY01033	Sec-independent protein translocase protein tatC homolog	Putative uncharacterized protein	potential integral membrane protein belonging to yigU(e. coli)/ycbT (Bacillus subtilis) family hypothetical chloroplast RF43	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC	Sec-independent twin-arginine translocase system protein	CDS_ID OB1737 hypothetical protein	similar to AX064127-1|CAC25304.1| percent identity: 72 in 313 aa conserved hypothetical protein	probable sec-independent protein translocase component	Putative sec-independent protein translocase component TatC	Sec-independent protein translocase protein TatC	SCI41.15c, hypothetical integral membrane protein, len: 316 aa. Similarity to SW:Q10702 SW:YK93_MYCTU Mycobacterium tuberculosis unknown membrane protein RV2093c, 308 aa; fasta scores: opt: 638 z-score: 762.5 E():0; 40.1% identity in 289 aa overlap. Contains Pfam match to entry PF00902 UPF0032, MttB family. putative integral membrane protein SCI41.15c	Twin-arginine translocase TatC component	Sec-independent protein translocase protein tatC homolog	Lin0380 protein	Sec-independent protein translocase component	Sec-independent protein translocase	Uncharacterized protein family UPF0032	Putative uncharacterized protein	Similar to Sec-independent protein translocase TatC hypothetical protein	conserved gene sec-independent (periplasmic) protein translocase protein TatC	Similar to Sec-independent protein translocase TatC hypothetical protein	ycf43 sec-independent protein translocase protein TatC	Sec-independent protein translocase protein tatC	Sec-independent protein secretion pathway component TatC	identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945 Sec-independent protein translocase TatC	Putative uncharacterized protein	SEC-independent protein translocase protein	Sec-independent protein translocase protein tatC homolog	Mb2120c, tatC, len: 308 aa. Equivalent to Rv2093c, len: 308 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 308 aa overlap). Probable tatC, transmembrane protein, component of twin-arginine translocation protein export system (see citation below for more information), equivalent to U00017|U00017_1 from Mycobacterium leprae (317 aa), FASTA scores: opt: 1722, E(): 0, (84.5% identity in 310 aa overlap). Similarity to others e.g. P27857|TATC_ECOLI|MTTB|B3839|Z5360|ECS4768 Sec-independent protein translocase protein from E. coli strain K12 and O157:H7 (258 aa), FASTA scores: opt: 344, E(): 6e-16, (32.5% identity in 265 aa overlap). BELONGS TO THE TATC FAMILY. Probable Sec-independent protein translocase transmembrane protein tatC	
HELPY01034	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine tRNA ribosyltransferase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	CDS_ID OB2034 S-adenosylmethionine-tRNA ribosyltransferase-isomerase	S-adenosylmethionine tRNA ribosyltransferase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine--tRNA ribosyltransferase- isomerase	Residues 1 to 356 of 356 are 100 pct identical to residues 1 to 356 of a 356 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286144.1 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	
HELPY01035	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Methyltransferase GidB	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	CDS_ID OB3489 glucose-inhibited division protein B	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	16S rRNA methyltransferase GidB	StH24.07, conserved hypothetical GidB-family protein, len: 239 aa; previously sequenced as TR:O54571 (EMBL:Y16311) Streptomyces coelicolor gidB-like protein (239 aa). Similar to many members of the gidB family of hypothetical proteins e.g. TR:O53597 (EMBL:AL021426) Mycobacterium tuberculosis hypothetical protein (224 aa), fasta scores; opt: 654 z-score: 756.9 E(): 0, 48.0% identity in 221 aa overlap conserved hypothetical GidB-family protein	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Residues 1 to 207 of 207 are 99 pct identical to residues 1 to 207 of a 207 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290379.1 glucose-inhibited division; chromosome replication?	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Similar to glucose inhibited division protein B GidB hypothetical protein	conserved gene glucose inhibited division protein B	Similar to glucose inhibited division protein B GidB hypothetical protein	identified by similarity to EGAD:18378; match to protein family HMM PF02527; match to protein family HMM TIGR00138 glucose-inhibited division protein B	Ribosomal RNA small subunit methyltransferase G	GidB Methyltransferase	
HELPY01036	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01037	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01038	Putative uncharacterized protein	outer membrane protein HorD	outer membrane protein 19 hypothetical protein	Outer membrane protein HorD	Outer membrane protein	Outer membrane protein HorD	
HELPY01039	Chemotaxis protein cheY homolog	Chemotaxis protein CheY	Chemotaxis protein cheY	Response regulator receiver	Chemotaxis protein	Residues 1 to 129 of 129 are 100 pct identical to residues 1 to 129 of a 129 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288319.1 chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components	Chemotaxis protein cheY	Response regulator receiver domain	Chemotaxis protein CheY	Chemotaxis regulator protein CheY	identified by similarity to SP:P06143; match to protein family HMM PF00072 chemotaxis protein CheY	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark chemotaxis protein	IPR001789: Response regulator receiver chemotaxis regulator, transmits chemoreceptor signals to flagelllar motor components	similar to Salmonella typhi CT18 chemotaxis protein CheY chemotaxis protein CheY	Chemotaxis regulatory protein CheY	Chemotaxis protein	Chemotaxis protein cheY homolog	Chemotaxis protein CheY	Chemotaxis response regulator	chemotaxis protein CheY	Similar to the N-terminal region of Escherichia coli, and Escherichia coli O157:H7 phosphate regulon transcriptional regulatory protein PhoB or B0399 or Z0497 or ECS0449 where the response regulator activity resides SWALL:PHOB_ECOLI (SWALL:P08402) (229 aa) fasta scores: E(): 2.7e-08, 35.53% id in 121 aa, and to Bacteroides thetaiotaomicron putative two-component system response regulator BT0524 SWALL:AAO75631 (EMBL:AE016928) (121 aa) fasta scores: E(): 2.9e-34, 76.86% id in 121 aa putative response regulator	Chemotaxis protein CheY	Chemotaxis protein CheY	Chemotaxis protein cheY	chemotaxis protein	identified by similarity to SP:Q51455; match to protein family HMM PF00072 chemotaxis protein CheY	identified by similarity to SP:Q51455; match to protein family HMM PF00072 chemotaxis protein CheY	identified by match to protein family HMM PF00072 chemotaxis protein chey	Response regulator receiver	
HELPY01040	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Putative uncharacterized protein	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	identified by match to protein family HMM TIGR00406 ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	identified by similarity to SP:P28637; match to protein family HMM PF06325 ribosomal protein L11 methyltransferase, putative	50S ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	methyltransferase	IPR000051: SAM (and some other nucleotide) binding motif; IPR004498: Ribosomal protein L11 methyltransferase methylation of 50S ribosomal subunit protein L11	similar to Salmonella typhi CT18 ribosomal protein L11 methyltransferase ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	similar to BR1417, ribosomal protein L11 methyltransferase, hypothetical ribosomal protein L11 methyltransferase, hypothetical	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Putative ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	best blastp match gb|AAK34673.1| (AE006621) putative methyltransferase [Streptococcus pyogenes M1 GAS] putative methyltransferase	identified by match to protein family HMM TIGR00406 ribosomal protein L11 methyltransferase	
HELPY01041	Cell division protease ftsH homolog	cell division protein	Cell division protease ftsH homolog	FtsH; cell division protein	FtsH	cell division protein ATP-dependent Zn protease	Cell division protein FtsH	identified by similarity to SP:P71408; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241 cell division protein FtsH	Membrane bound zinc metallopeptidase	Cell division protein ftsH homolog	cell division protein FtsH3	ATP-dependent Zn protease FtsH	Peptidase M41, FtsH	Peptidase M41, FtsH	Peptidase M41, FtsH	ATP-dependent metalloprotease FtsH	Peptidase M41, FtsH	ATP-dependent metalloprotease FtsH	ATP-dependent metalloprotease FtsH	FtsH-2 peptidase. Metallo peptidase. MEROPS family M41	Peptidase M41, FtsH	Peptidase M41, FtsH	FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 precursor	Peptidase M41, FtsH	transcript_id=ENSGACT00000001947	Peptidase M41, FtsH	cell division protein	ATP-dependent metalloprotease FtsH precursor	
HELPY01042	Uncharacterized protein HP_1070	hypothetical protein	Putative uncharacterized protein	
HELPY01043	CDP-diacylglycerol--serine O- phosphatidyltransferase	CDP-diacylglycerol--serine O- phosphatidyltransferse	Putative CDPdiacylglycerol-serine O- phosphatidyltransferase	phosphatidylserine synthase	CDP-diacylglycerol--serine O- phosphatidyltransferase	Possible phosphatidylserine synthase	Phosphatidylserine synthase	Phosphatidylserine synthase	Phosphatidylserine synthase	Phosphatidylserine synthase	PssA; CDP-diacylglycerol--serine O- phosphatidyltransferase	Putative cdp-diacylglycerol--serine o- phosphatidyltransferase protein	similar to CDP-diacylglycerol-serine O-phosphatidyltransferase (Phosphatidylserine synthase) hypothetical protein	conserved gene CDP-diacylglycerol-serine-O- phosphatidyltransferase	similar to CDP-diacylglycerol-serine O-phosphatidyltransferase (Phosphatidylserine synthase) hypothetical protein	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	Phosphatidyltransferase	identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	InterProMatches:IPR004533, IPR000462; Molecular Function: CDP-diacylglycerol-serine O-phosphatidyltransferase activity (GO:0003882), Biological Process: phosphatidylcholine biosynthesis (GO:0006656), Biological Process: phospholipid biosynthesis (GO:0008654) phosphatidylserine synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phosphatidylserine synthase	Phosphatidylserine synthase PssA	Phosphatidylserine synthase	Phosphatidylserine synthase	CDP-diacylglycerol--serine O-phosphatidyltransferase	Similar to rc||pssA rp||pssA sp|Q9ZBM2|PSS_MYCLE sp|P96282|PSS_MYCTU; Ortholog to ERGA_CDS_03160 CDP-diacylglycerol--serine O-phosphatidyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme phosphatidylserine synthase	COG1183 PssA phosphatidylserine synthase; go_process: 0008654 CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O- phosphatidyltransferase	Similar to Rhizobium loti phosphatidylserine synthase MLR7822 SWALL:Q984V9 (EMBL:AP003012) (248 aa) fasta scores: E(): 1.5e-12, 34.17% id in 237 aa, and to Bacteroides thetaiotaomicron CDP-diacylglycerol--serine O-phosphatidyltransferase BT2232 SWALL:AAO77339 (EMBL:AE016935) (235 aa) fasta scores: E(): 2.6e-68, 72.57% id in 237 aa, and to Fusobacterium nucleatum CDP-diacylglycerol--serine O-phosphatidyltransferase FN0991 SWALL:Q8REU8 (EMBL:AE010606) (261 aa) fasta scores: E(): 4.2e-14, 31.33% id in 233 aa putative phosphatidylserine synthase	
HELPY01044	Copper-transporting ATPase	heavy metal-transporting ATPase	Putative cation-transporting ATPase	Cation-transporting ATPase	Heavy-metal transporting P-type ATPase	Cation-transporting ATPase	Copper-transporting ATPase; P-type ATPase	Cation transport ATPase, E1-E2 family	CDS_ID OB1142 copper-transporting ATPase	cation transporting P-type ATPase	Copper-translocating P-type ATPase	Copper-exporting ATPase	Putative cation transporting P-type ATPase	Heavy-metal transporting P-type ATPase	Copper-transporting ATPase	Copper-transporting P-type ATPase	Cation transport ATPases	Heavy-metal transporting p-type ATPase	Copper-exporting P-type ATPase A	heavy-metal transporting P-type ATPase	Copper-exporting P-type ATPase A	Probable cation-transporting atpase transmembrane protein	Copper-transporting P-type ATPase	putative copper efflux ATPase hypothetical protein	Copper transporting ATPase	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 cation-transporting ATPase, E1-E2 family	Copper-transporting P-type ATPase	found in the thylakoid membrane of Synechococcus PCC7942 copper transporting CPx-type ATPase PacS	identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 copper-translocating P-type ATPase	
HELPY01045	COP-associated protein	Mercuric reductase	Putative uncharacterized protein	COP associated protein	copper ion binding protein	Copper chaperone	copper iron binding protein (Q9ZM70) COP associated protein (Copper ion binding protein) High confidence in function and specificity	Mercuric reductase	Copper ion binding protein	Heavy metal transport/detoxification protein	Copper ion binding protein	Copper ion binding protein	Heavy metal transport/detoxification protein	Copper ion binding protein	

HELPY01047	Conserved hypothetical secreted protein	Putative	Putative periplasmic protein	conserved hypothetical secreted protein	conserved hypothetical protein	lipoprotein, putative	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Lipoprotein, putative precursor	Putative uncharacterized protein	Putative uncharacterized protein	Purine nucleoside phosphorylase	Putative uncharacterized protein	Putative uncharacterized protein	Conserved hypothetical secreted protein	Putative uncharacterized protein	Secreted protein	Putative lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01048	Putative uncharacterized protein	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01049	High-affinity nickel-transport protein nixA	High affinity nickel transporter	Putative high-affinity nickel-transport protein	Putative nickel transport protein	Similar to high-affinity nickel-transport protein	Probable high affinity nickel transporter transmembrane protein	Similar to high-affinity nickel-transport protein	High affinity nickel transporter transmembrane protein	NicT	HoxN/HupN/NixA family nickel transporter	Mb2881, nicT, len: 372 aa. Equivalent to Rv2856, len: 372 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 372 aa overlap). Possible nicT, nickel-transport integral membrane protein, similar to transport proteins and hydrogenase cluster proteins e.g.  BAB58860|SAV2698 HYPOTHETICAL 37.9 KDA PROTEIN from Staphylococcus aureus subsp. aureus Mu50 (338 aa), FASTA scores: opt: 1082, E(): 7.1e-60, (48.05% identity in 335 aa overlap); Q97ZB2|HOXN HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN from Sulfolobus solfataricus (373 aa), FASTA scores: opt: 922, E(): 6.6e-50, (42.2% identity in 372 aa overlap); P23516|HOXN_ALCEU HIGH-AFFINITY NICKEL TRANSPORT PROTEIN (INTEGRAL MEMBRANE PROTEIN) from Alcaligenes eutrophus (Ralstonia eutropha) (351 aa), FASTA scores: opt: 904, E(): 8.3e-49, (41.9% identity in 339 aa overlap); Q45247|HUPN_BRAJA HYDROGENASE NICKEL INCORPORATION PROTEIN from Bradyrhizobium japonicum (381 aa), FASTA scores: opt: 853, E(): 1.3e-45, (41.65% identity in 329 aa overlap); etc. SEEMS TO BELONG TO THE HOXN/HUPN/NIXA FAMILY OF NICKEL TRANSPORTERS (NiCoT FAMILY). POSSIBLE NICKEL-TRANSPORT INTEGRAL MEMBRANE PROTEIN NICT	putative nickel transporter	similar to Salmonella typhimurium putative nickel transporter putative nickel transporter	hypothetical protein, similar to high-affinity nickel-transport protein	High-affinity nickel-transport protein nixA	Putative nickel transport (NiCoT family) protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2778 putative nickel transport protein	hypothetical protein, similar to high-affinity nickel-transport protein	conserved nickel transporter	Putative nickel transporter	hypothetical protein, similar to high-affinity nickel-transport protein	Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN SW:HOXN_ALCEU (P23516) (351 aa) fasta scores: E(): 4e-52, 44.2% id in 328 aa, and to Helicobacter pylori J99 high-affinity nickel-transport protein JHP0348 SW:NIXA_HELPJ (Q9ZM74) (331 aa) fasta scores: E(): 1.5e-63, 53.15% id in 333 aa putative nickel transport protein	identified by similarity to EGAD:33273; match to protein family HMM PF03824; match to protein family HMM TIGR00802 high-affinity nickel-transport protein	High-affinity nickel-transporter	high-affinity nickel-transporter identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802	probable high-affinity nickel-transport protein	high-affinity nickel-transporter	High-affinity nickel-transporter	high-affinity nickel-transporter	
HELPY01050	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01051	Putative uncharacterized protein	Putative	hypothetical protein	ATPase-like protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	ATPase-like protein	Putative uncharacterized protein	Putative ATPase	Putative uncharacterized protein	
HELPY01052	Conserved hypothetical integral membrane protein	identified by match to protein family HMM PF04471 putative prophage LambdaCh01, restriction endonuclease	conserved hypothetical integral membrane protein	conserved hypothetical protein Function unclear	Predicted Mrr-like endonuclease	Restriction endonuclease precursor	Restriction endonuclease	Restriction endonuclease precursor	Restriction endonuclease	Putative uncharacterized protein	Restriction endonuclease	Putative uncharacterized protein	Integral membrane protein	Putative uncharacterized protein	Restriction endonuclease	5-methylcytosine-specific restriction enzyme MRR	5-methylcytosine-specific restriction enzyme MRR	
HELPY01053	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01054	Multidrug resistance protein	Multi-drug resistance protein	ABC transporter, transmembrane region	multidrug resistance protein	transcript_id=ENSOGAT00000006752	multidrug resistance protein Lipid A export ATP-binding/permease protein msbA High confidence in function and specificity	Multidrug resistance protein	Multidrug resistance protein	Multidrug resistance protein msba	Bacteriocin processing peptidase	Multidrug resistance protein	ABC-type transport system, ATP binding protein; putative lipid A and glycerophospholipid transporter; putative membrane protein; putative signal peptide	
HELPY01055	Putative uncharacterized protein	Putative Outer membrane protein	outer membrane protein HofB	Putative uncharacterized protein	Outer membrane protein	Outer membrane protein HofB	
HELPY01056	Aspartate carbamoyltransferase	aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase catalytic chain	CDS_ID OB1488 aspartate carbamoyltransferase catalytic chain	similar to AL357523-11|CAB93367.1| percent identity: 57 in 313 aa putative aspartate carbamoyltransferase	aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase catalytic chain	SC9C5.11c, pyrB, aspartate carbamoyltransferase, len: 326 aa; similar to SW:PYRB_PSEPU (EMBL:M97253) Pseudomonas putida aspartate carbamoyltransferase (EC 2.1.3.2) PyrB, 334 aa; fasta scores: opt: 902 z-score: 1064.2 E(): 0; 47.3% identity in 311 aa overlap. Contains 2x Pfam matches to entry PF00185 OTCace, Aspartate/ornithine carbamoyltransferase and match to Prosite entry PS00097 Aspartate and ornithine carbamoyltransferases signature aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Aspartate carbamoyltransferase	Residues 1 to 311 of 311 are 100 pct identical to residues 1 to 311 of a 311 aa protein from Escherichia coli O157:H7 ref: NP_313249.1 aspartate carbamoyltransferase catalytic subunit	Aspartate carbamoyltransferase	
HELPY01057	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01058	Hemolysin	hypothetical conserved protein	Putative cytotoxin/hemolysin	Putative hemolysin	Putative cytotoxin/hemolysin	Hemolysin	HEMOLYSIN	Putative rRNA methylase	Putative hemolysin	Putative cytotoxin/hemolysin	CDS_ID OB1876 hemolysin	HEMOLYSIN A	similar to AL583921-123|CAC31739.1| percent identity: 54 in 273 aa putative membrane protein	hemolysin-like protein	Hemolysin-like protein	Putative hemolysin	Predicted rRNA methylase, YQXC B.subtilis ortholog	Hemolysin	Hemolysin-like protein	RRNA methylase	Ribosomal RNA large subunit methyltransferase J	SCI51.22c, possible membrane protein, len: 271 aa; unknown function, similar to hemolysins and hemolysin-like hypothetical proteins e.g. SW:HLYA_TREHY (EMBL:X61684), tlyA, Treponema hyodysenteriae hemolysin A (240 aa), fasta scores; opt: 457 z-score: 532.9 E(): 2.5e-22, 35.4% identity in 240 aa overlap and TR:Q50760 (EMBL:X98295), tlyA, Mycobacterium tuberculosis. Contains a hydrophobic, possible membrane-spanning region. Contains Pfam match to entry PF01479 S4, S4 domain and PS00017 ATP/GTP-binding site motif A (P-loop) putative membrane protein	Predicted rRNA methylase	HEMOLYSIN	Lin1403 protein	Hemolysin-like protein	Hemolysin A	TlyA haemolysin	Hemolysin homolog	
HELPY01059	Riboflavin biosynthesis regulatory protein	riboflavin biosynthesis protein	riboflavin kinase (flavokinase); FAD synthetase (FAD pyrophosphorylase)	Putative riboflavin kinase	Putative macrolide-efflux protein	Riboflavin biosynthesis protein RibF	Riboflavin biosynthesis protein RibF	Riboflavin kinase-FAD synthetase	RIBOFLAVIN KINASE , FMN ADENYLYLTRANSFERASE	FAD synthase	Putative macrolide-efflux protein	Riboflavin kinase/FMN adenylyltransferase	Riboflavin biosynthesis protein	Riboflavin biosynthesis protein ribF	CDS_ID OB1602; FMN adenylylate transferase riboflavin kinase	similar to AX064291-1|CAC25386.1| percent identity: 79 in 340 aa riboflavin kinase/FMN adenylyltransferase	Putative riboflavin kinase/FMN adenylyltransferase	riboflavin kinase ribF	Riboflavin biosynthesis protein RibF, putative	Riboflavin kinase/FMN adenylyltransferase	Riboflavin kinase	Putative riboflavin kinase ribF	Riboflavin kinase/FAD synthase	Riboflavin kinase, FMN adenyltransferase	Riboflavin kinase , FAD synthase	Riboflavin biosynthesis protein ribF	Riboflavin biosynthesis protein RibF homolog	SC9F2.05c, probable riboflavin kinase (FAD synthetase), len: 318 aa; similar to many e.g.  SW:RIBF_CORAM riboflavin kinase from Corynebacterium ammoniagenes (338 aa) fasta scores; opt: 801, z-score: 904.5, E(): 0, (45.4% identity in 326 aa overlap) probable riboflavin kinase (FAD synthetase)	FAD synthase	
HELPY01060	Transketolase A	transketolase	Putative transketolase	Putative transketolase	Transketolase	Transketolase	Transketolase	Transketolase	Transketolase 2 isozyme	CDS_ID OB1672 transketolase	similar to AX065121-1|CAC25800.1| percent identity: 86 in 699 aa transketolase	Probable transketolase	Transketolase	Transketolase	Transketolase A	Transketolase	Transketolase	Transketolase	Transketolase	SCC22.17, tktA1, probable transketolase, len: 695aa; similar to many egs. TR:O88019 (EMBL:AL031107) tkt, transketolase from Streptomyces coelicolor (698 aa) fasta scores; opt: 3653, z-score: 4066.7, E(): 0, (79.1% identity in 685 aa overlap) and TR:CAB19861 (EMBL:AB023377) glutamicum transketolase from Brevibacterium lactofermentum (676 aa) fasta scores; opt: 2710, z-score: 3016.8, E(): 0, (60.7% identity in 684 aa overlap). (Note Streptomyces coelicolor has another probable transketolase, tkt2, TR:Q9ZC16 (EMBL:AL033505) which is more similar to eukaryotic homologues.) Contains Pfam match to entry PF00456 transketolase, Transketolase and Prosite matches to PS00801 Transketolase signature 1 and PS00802 Transketolase signature 2. transketolase A	Transketolase	Transketolase	Lin0360 protein	Residues 13 to 679 of 679 are 99 pct identical to residues 1 to 667 of a 667 aa protein from Escherichia coli K12 ref: NP_416960.1 transketolase 2 isozyme	Transketolase	Transketolase 1	Transketolase	Transketolase	TktA	
HELPY01061	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein similar to HP1089 Function unclear	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01062	DNA translocase ftsK	cell division protein	hypothetical protein similarity to COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins(Evalue: 1E-174)	septum formation protein ftsK; cell division protein High confidence in function and specificity	Cell division protein	Cell division protein	Cell divisionFtsK/SpoIIIE	Cell divisionFtsK/SpoIIIE	Cell division protein FtsK	
HELPY01063	Alpha-ketoglutarate permease	Alpha-ketoglutarate permease	ALPHA-KETOGLUTARATE PERMEASE	Alpha-ketoglutarate permease	Alpha-ketoglutarate permease	Residues 35 to 466 of 466 are 100 pct identical to residues 1 to 432 of a 432 aa protein from Escherichia coli K12 ref: NP_417082.1 alpha-ketoglutarate permease	YgcS protein	Putative alpha-ketoglutarate permease transmembrane protein	identified by similarity to SP:P17448; match to protein family HMM PF00083 alpha-ketoglutarate permease	InterProMatches:IPR005829; Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020) inositol transport protein	inositol transporter, major facilitator superfamily (MFS) family	IPR005829: Sugar transporter superfamily; IPR007114: Major facilitator superfamily MFS family, alpha-ketoglutarate permease	similar to Salmonella typhi CT18 alpha-ketoglutarate permease alpha-ketoglutarate permease	similar to BR1453, metabolite-proton symporter metabolite-proton symporter	ALPHA-KETOGLUTARATE PERMEASE	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter dicarboxylic acid transport protein; alpha-ketoglutarate permease (MFS superfamily)	Dicarboxylate MFS transporter	MFS family alpha-ketoglutarate permease	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 dicarboxylic acid transport protein	Citrate-proton symport	Code: GEPR; COG: COG0477 alpha-ketoglutarate permease	Sugar transporter:Citrate-proton symport:General substrate transporter:Sugar transporter superfamily:Major facilitator superf...	Code: GEPR; COG: COG0477 alpha-ketoglutarate permease	Citrate-proton symport	Citrate-proton symporter, (MFS_1)	Code: GEPR; COG: COG0477 alpha-ketoglutarate permease	Metabolite	Alpha-ketoglutarate permease	alpha-ketoglutarate permease	
HELPY01064	Flagellar basal-body rod protein	Hook protein	Flagella basal body rod protein	Probable flagellar basal-body rod protein flgf	conserved gene flagellar basal body rod protein FlgF	flagellar biosynthesis protein FlgF	Flagellar basal-body rod protein flgF	identified by similarity to SP:P39752; match to protein family HMM PF00460 flagellar basal-body rod protein	InterProMatches:IPR001444; Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: flagellum (sensu Bacteria) (GO:0009288) flagellar basal-body rod protein	Flagellar distal rod protein FlgG	Flagellar protein	FLAGELLAR BASAL-BODY ROD PROTEIN	Flagellar hook-basal body complex protein	Flagellar basal-body rod protein flgF	identified by similarity to SP:P75938; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02490 flagellar basal-body rod protein FlgF	identified by match to protein family HMM PF00460; match to protein family HMM TIGR02490 flagellar basal-body rod protein FlgF	Flagellar basal body rod protein:Protein of unknown function DUF1078	identified by similarity to SP:P23446; match to protein family HMM PF00460; match to protein family HMM PF06429 flagellar hook-basal body rod protein	Flagellar basal body rod protein	Evidence 2b : Function of strongly homologous gene; Product type s : structural protein flagellar biosynthesis; cell-proximal portion of basal-body rod	conserved hypothetical protein	flagellar basal-body rod protein identified by match to protein family HMM PF00460; match to protein family HMM PF06429	flagellar basal body rod protein	Flagellar basal body rod protein	Flagellar basal body rod protein COG4786	flagella basal body rod protein	flagellar basal-body rod protein FlgG	flagellar basal body rod protein	Flagellar basal body rod protein	



HELPY01502	IS605 transposase	IS200-type transposase	identified by match to protein family HMM PF01797 ISChy9, transposase orfA	Transposase IS200-like	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy putative transposase	Transposase IS200-like	IS605 family transposase orfA identified by match to protein family HMM PF01797	ISSoc10, orfA transposase identified by similarity to PIR:AI2478; match to protein family HMM PF01797	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: tfu:Tfu_1323 transposase-related protein	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: hma:rrnAC0815 probable transposase	transposase	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: mva:Mvan_1583 transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	Transposase	Putative uncharacterized protein	Transposase IS200-like protein	Transposase	Transposase IS200-family protein	Transposase IS200	Transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	
HELPY01069	Putative beta-lactamase hcpC	Putative uncharacterized protein	Putative beta-lactamase hcpC precursor	Sel1	Sel1-like protein	Code: R; COG: COG0790; orf conserved hypothetical protein	Sel1-like repeat	Sel1	putative exported protein	cysteine-rich protein C	Tetratricopeptide TPR_2	Putative uncharacterized protein	Sel1 domain protein repeat-containing protein PFAM: Sel1 domain protein repeat-containing protein KEGG: bcn:Bcen_2501 Sel1-like repeat	putative secreted protein (Q9ZKB5) Putative beta-lactamase hcpC precursor (EC 3.5.2.6) (Cysteine-rich protein C) Specificity unclear	Hypothetical protein	Sel1 domain protein repeat-containing protein	Autotransporter-associated beta strand repeat protein	Sel1 domain protein repeat-containing protein	Conserved protein	Sel1 domain protein repeat-containing protein	Putative beta-lactamase HcpC	Putative uncharacterized protein	Putative uncharacterized protein	Cysteine-rich protein C	Uncharacterized protein KIAA0141 [Source:UniProtKB/Swiss-Prot;Acc:Q14154]	Putative uncharacterized protein ybeQ	Hcp beta-lactamase-like protein C1orf163 [Source:UniProtKB/Swiss-Prot;Acc:Q96BR5]	Cysteine-rich protein C	Cysteine-rich protein C; putative signal peptide	
HELPY01070	2-keto-3-deoxy-6-phosphogluconate aldolase	2-keto-3-deoxy-6-phosphogluconate aldolase	4-Hydroxy-2-oxoglutarate aldolase	SCC30.06, kdgA, KHG/KDPG aldolase, len: 219 aa; highly similar to SW:ALKH_ECOLI (EMBL:X68871) Escherichia coli KHG/KDPG aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) (phospho-2-dehydro-3-deoxygluconate aldolase) (phospho-2-keto-3-deoxygluconate aldolase) (2-keto-3-deoxy-6-phosphogluconate aldolase) (KDPG-aldolase)] KdgA, 213 aa; fasta scores: opt: 757 z-score: 811.9 E(): 0; 55.0% identity in 202 aa overlap.  Contains Pfam match to entry PF01081 Aldolase, KDPG and KHG aldolase and matches to Prosite entries PS00159 KDPG and KHG aldolases active site and PS00160 KDPG and KHG aldolases Schiff-base forming residue KHG/KDPG aldolase	2-keto-3-deoxy-6-phosphogluconate aldolase	similar to 2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase hypothetical protein	conserved gene multifunctional: 2-keto-3-deoxygluconate 6-phosphate aldolase/(4-hydroxy-2-oxoglutarate aldolase	similar to 2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase hypothetical protein	identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182; 4-hydroxy-2-oxoglutarate aldolase 2-dehydro-3-deoxyphosphogluconate aldolase	2-dehydro-3-deoxy-phosphogluconate aldolase	2-keto-3-deoxy-6-phosphogluconate aldolase	4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3- deoxyphosphogluconate aldolase protein	InterProMatches:IPR000887; Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolism (GO:0008152) 2-keto-3-deoxygluconate-6-phosphate aldolase	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase	IPR000887: KDPG and KHG aldolase multifunctional:2-keto-3-deoxygluconate 6-phosphate aldolase; 2-keto-4-hydroxyglutarate aldolase; oxaloacetate decarboxylase	similar to Salmonella typhi Ty2 hypothetical protein hypothetical protein	pseudo	2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE	2-keto-4-hydroxyglutarate aldolase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme bifunctional protein [Includes: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxyphosphogluconate aldolase (Phospho-2-dehydro-3-deoxygluconate aldolase) (Phospho-2-keto-3-deoxygluconate aldolase) (2-keto-3-deoxy-6-phosphogluconate aldolase) (KDPG-aldolase)]	COG0800 2-dehydro-3-deoxy-phosphogluconate aldolase	2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase	2-keto-3-deoxygluconate 6-phosphate aldolase	KDPG aldolase	identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182 KHG/KDPG aldolase	bifunctional aldolase; Best Blastp Hit: pir||B81088 KHG-KDPG bifunctional aldolase NMB1394 [similarity] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7226633|gb|AAF41758.1| (AE002488) 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase [Neisseria meningitidis MC58] >gi|7380253|emb|CAB84839.1| (AL162756) 2-keto-4-hydroxyglutarate aldolase [Neisseria meningitidis] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; AlkH putative khg/kdpg 4-hydroxy-2-oxoglutarate aldolase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme multifunctional: 2-keto-3-deoxygluconate 6-phosphate aldolase; 2-keto-4-hydroxyglutarate aldolase; oxaloacetate decarboxylase	2-keto-3-deoxy-phosphogluconate aldolase	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	
HELPY01071	Phosphogluconate dehydratase	PHOSPHOGLUCONATE DEHYDRATASE	Phosphogluconate dehydratase	phosphogluconate dehydratase	Dihydroxyacid dehydratase	Phosphogluconate dehydratase	Residues 1 to 603 of 603 are 99 pct identical to residues 1 to 603 of a 603 aa protein from Escherichia coli O157:H7 ref: NP_310588.1 6-phosphogluconate dehydratase	Phosphogluconate dehydratase	Probable phosphogluconate dehydratase oxidoreductase protein	identified by match to protein family HMM PF00920; match to protein family HMM TIGR01196 phosphogluconate dehydratase	Phosphogluconate dehydratase	6-phosphogluconate dehydratase	Phosphogluconate dehydratase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 6-phosphogluconate dehydratase	IPR000581: Dihydroxy-acid and 6-phosphogluconate dehydratase 6-phosphogluconate dehydratase	similar to Salmonella typhi CT18 6-phosphogluconate dehydratase 6-phosphogluconate dehydratase	similar to sequence of BRA0780, similar to GB:NP_541489.1; GB:NP_384808.1; GB:NP_107007.1 phosphogluconate dehydratase	6-phosphogluconate dehydratase	pseudo	Phosphogluconate dehydratase	Phosphogluconate dehydratase	Phosphogluconate dehydratase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme phosphogluconate dehydratase (6-phosphogluconate dehydratase)	6-phosphogluconate dehydratase	6-phosphogluconate dehydratase	6-phosphogluconate dehydratase	6-phosphogluconate dehydratase	Phosphogluconate dehydratase	identified by match to protein family HMM PF00920; match to protein family HMM TIGR01196 6-phosphogluconate dehydratase	
HELPY01072	Glucose-6-phosphate 1-dehydrogenase	glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	CDS_ID OB2938 glucose-6-phosphate 1-dehydrogenase	similar to AX074275-1|CAC28460.1| percent identity: 88 in 514 aa putative glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD)	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	SCC22.19, zwf2, probable glucose-6-phosphate 1-dehydrogenase, len: 507aa; similar to many egs.  TR:O88017 (EMBL:AL031107) zwf, glucose-6-phosphate 1-dehydrogenase from Streptomyces coelicolor (592 aa) fasta scores; opt: 2956, z-score: 3467.3, E(): 0, (85.0% identity in 507 aa overlap) and SW:G6PD_BACSU glucose-6-phosphate 1-dehydrogenase from Bacillus subtilis (489 aa) fasta scores; opt: 1248, z-score: 1464.7, E(): 0, (40.5% identity in 486 aa overlap). Contains Pfam match to entry PF00479 G6PD, Glucose-6-phosphate dehydrogenase and Prosite match to PS00069 Glucose-6-phosphate dehydrogenase active site. putative glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	similar to Glucose-6-phosphate 1-dehydrogenase hypothetical protein	conserved gene glucose-6-phosphate-1-dehydrogenase	similar to Glucose-6-phosphate 1-dehydrogenase hypothetical protein	
HELPY01073	6-phosphogluconolactonase	6-phosphogluconolactonase	6-PHOSPHOGLUCONOLACTONASE	Putative phosphogluconolactonase	similar to AX064875-1|CAC25677.1| percent identity: 69 in 241 aa putative 6-phosphogluconolactonase	Putative 6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase	Glucosamine/galactosamine-6-phosphate isomerase	Probable 6-phosphogluconolactonase oxidoreductase protein	similar to 6-phosphogluconolactonase hypothetical protein	conserved gene 6-phosphogluconolactonase	similar to 6-phosphogluconolactonase hypothetical protein	6-phosphogluconolactonase	identified by match to protein family HMM TIGR01198 6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	DevB	6-phosphogluconolactonase protein	similar to BRA0779, 6-phosphogluconolactonase Pgl, 6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	
HELPY01074	Glucokinase	Glucokinase	glucokinase (glk)	Glucokinase	Glucokinase	Glucokinase	Glucokinase	similar to glucokinase hypothetical protein	conserved gene glucokinase	similar to glucokinase hypothetical protein	glucokinase	glucokinase, putative	Glucokinase	Glucokinase	Glucokinase	Glucokinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glucose kinase	similar to BRA1049, glucokinase Glk, glucokinase	Glucokinase	Glucokinase	Glucokinase	Glucokinase	Putative glucokinase	Glucokinase	glucose kinase; COG0837 glucokinase	Glucokinase	Similar to GLK_ANASP (P58616) Glucokinase from Anabaena sp. (strain PCC 7120) (342 aa). FASTA: opt: 735 Z-score: 904.6 E(): 1.7e-42 Smith-Waterman score: 735; 36.735 identity in 343 aa overlap. glucose kinase	Glucokinase	glucose kinase	
HELPY01075	Cinnamyl-alcohol dehydrogenase ELI3-2	Putative dehydrogenase	Alcohol dehydrogenase, zinc-containing	Zn-dependent alcohol dehydrogenase	NADP-dependent alcohol dehydrogenase	Putative oxidoreductase	CDS_ID OB0786 NADP-dependent alcohol dehydrogenase	Putative alcohol dehydrogenase class III	2SCK31.05, probable dehydrogenase, len: 346 aa; highly similar to SW:ADH_MYCTU (EMBL:AL021287) Mycobacterium bovis NADP-dependent alcohol dehydrogenase AdhC, 346 aa; fasta scores: opt: 1508 z-score: 1698.9 E(): 0; 64.5% identity in 346 aa overlap. Contains Pfam match to entry PF00107 adh_zinc, Zinc-binding dehydrogenases and matches to Prosite entries PS00059 Zinc-containing alcohol dehydrogenases signature and PS00017 ATP/GTP-binding site motif A (P-loop) putative dehydrogenase	Zinc-containing alcohol dehydrogenase superfamily	similar to alcohol dehydrogenase hypothetical protein	conserved gene alcohol dehydrogenase (NADP-dependent, zinc-type)	similar to alcohol dehydrogenase hypothetical protein	identified by match to protein family HMM PF00107 oxidoreductase, zinc-binding dehydrogenase family	AdhC	Alcohol dehydrogenase (NADP+) protein	NADP-dependent alcohol dehydrogenase C	Mb3071, adhC, len: 346 aa. Equivalent to Rv3045, len: 346 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 346 aa overlap). Probable adhC, NADP-dependent alcohol dehydrogenase (EC 1.1.1.2), equivalent to Q9CBQ3|ADHA|ML1730 ALCOHOL DEHYDROGENASES from Mycobacterium leprae (362 aa), FASTA scores: opt: 1982, E(): 1.3e-111, (85.85% identity in 346 aa overlap); Q9AE96|ADHC from Mycobacterium smegmatis (348 aa), FASTA scores: opt: 1808, E(): 3.4e-101, (78.95% identity in 347 aa overlap); Q9EWF1|SCK13.33c PUTATIVE DEHYDROGENASE from Streptomyces coelicolor (346 aa), FASTA scores: opt: 1508, E(): 3.3e-83, (64.45% identity in 346 aa overlap); O06007|ADHA from Bacillus subtilis (349 aa), FASTA scores: opt: 1412, E(): 1.9e-77, (61.8% identity in 335 aa overlap); etc. Contains PS00059 Zinc-containing alcohol dehydrogenases signature. BELONGS TO THE ZINC-CONTAINING ALCOHOL DEHYDROGENASE FAMILY. HIGH SIMILARITY WITH OTHER BACTERIAL ADH'S. PROBABLE NADP-DEPENDENT ALCOHOL DEHYDROGENASE ADHC	InterProMatches:IPR002328; Molecular Function: alcohol dehydrogenase activity, zinc-dependent (GO:0004024), Molecular Function: zinc ion binding (GO:0008270) NADP-dependent alcohol dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark alcohol dehydrogenase	Putative NADP-dependent alcohol dehydrogenase	Alcohol dehydrogenase	ZINC-DEPENDENT ALCOHOL DEHYDROGENASE	Alcohol dehydrogenase, zinc-containing	LmjF23.0360, predicted protein, len = 353 aa, NADP-dependent alcohol hydrogenase; predicted pI = 6.1423; high similarity to many bacterial NADP-dependent alcohol hydrogenase proteins; contains a zinc-binding dehydrogenase domain NADP-dependent alcohol dehydrogenase, putative	D-isomer specific 2-hydroxyacid dehydrogenase family protein	Zn-dependent alcohol dehydrogenase	alcohol dehydrogenase	Code: R; COG: COG1064 putative oxidoreductase	
HELPY01076	LPS biosynthesis protein	putative lipopolysaccharide biosynthesis protein	putative lipopolysaccharide biosynthesis protein (P27128) Lipopolysaccharide 13-galactosyltransferase (EC 2.4.1.44) (Lipopolysaccharide 3-alpha-galactosyltransferase) Function unclear	Putative lipopolysaccharide biosynthesis protein	Putative lipopolysaccharide biosynthesis protein	Lipopolysaccharide biosynthesis protein	
HELPY01077	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01078	Outer membrane protein	outer membrane protein HorH	outer membrane protein 4 hypothetical protein	Outer membrane protein	Outer membrane protein	Outer membrane protein HorH	
HELPY01079	Pyruvate ferredoxin oxidoreductase, gamma subunit	Pyruvate:ferredoxin oxidoreductase gamma subunit	Pyruvate ferrodoxin oxidoreductase	Pyruvate/2-oxoisovalerate: ferredoxin oxidoreductase, common gamma subunit	identified by similarity to SP:Q51799 pyruvic-ferredoxin oxidoreductase, gamma subunit	pyruvic-ferredoxin oxidoreductase, gammasubunit	identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175 putative keto/oxoacid ferredoxin oxidoreductase, gamma subunit	pyruvate synthase gamma subunit	PorC pyruvate:ferredoxin oxidoreductase	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate	pyruvate ferredoxin oxidoreductase, gamma subunit	Pyruvate synthase	pyruvate:ferredoxin oxidoreductase gamma subunit	pyruvate synthase subunit porC identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175	2-oxoacid--acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate	NADH dependant phenylglyoxylate	Pyruvate/ketoisovalerate oxidoreductase, gamma subunit	pyruvate/ketoisovalerate oxidoreductase, gamma subunit KEGG: mma:MM1342 pyruvate synthase gamma subunit TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase	pyruvate ferredoxin oxidoreductase, gamma subunit (Q9UYY9) Pyruvate/ketoisovalerate oxidoreductases common gamma subunit [Includes: Pyruvate synthase subunit porC (EC 1.2.7.1) (Pyruvate oxidoreductase gamma chain) (POR) (Pyruvic-ferredoxin oxidoreductase gamma subunit); Ketoisovalerate oxidor High confidence in function and specificity	pyruvate/ketoisovalerate oxidoreductase, gamma subunit TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase KEGG: ctc:CTC02528 pyruvate synthase subunit porC	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate	Pyruvate/ketoisovalerate oxidoreductase, gamma subunit	Pyruvate/ketoisovalerate oxidoreductase, gamma subunit	Hypothetical protein	Pyruvate/ketoisovalerate oxidoreductase, gamma subunit	pyruvate/ketoisovalerate oxidoreductase, gamma subunit KEGG: sat:SYN_00157 pyruvate:ferredoxin oxidoreductase gamma subunit TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase	Pyruvate/ketoisovalerate oxidoreductase, gamma subunit	
HELPY01080	Pyruvate ferredoxin oxidoreductase, delta subunit	Pyruvate ferrodoxin oxidoreductase	2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate	pyruvate ferredoxin oxidoreductase, delta subunit	pyruvate ferredoxin oxidoreductase, delta subunit (Q56316) Pyruvate synthase subunit porD (EC 1.2.7.1) (Pyruvate oxidoreductase delta chain) (POR) (Pyruvic-ferredoxin oxidoreductase delta subunit) Function unclear	Pyruvate:ferredoxin oxidoreductase, delta subunit	Pyruvate:ferredoxin oxidoreductase, delta subunit	Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit	Pyruvate flavodoxin oxidoreductase subunit delta	Pyruvate ferredoxin oxidoreductase, delta subunit	2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate	Pyruvate ferredoxin oxidoreductase delta subunit	
HELPY01081	Pyruvate ferredoxin oxidoreductase, alpha subunit	Pyruvate:ferredoxin oxidoreductase alpha subunit	Pyruvate ferrodoxin oxidoreductase	phenylglyoxylate:acceptor oxidoreductase	identified by similarity to SP:Q51804 pyruvic-ferredoxin oxidoreductase, alpha subunit	pyruvic-ferredoxin oxidoreductase, alpha subunit	pyruvate synthase alpha subunit	PorA pyruvate:ferredoxin oxidoreductase	Pyruvate flavodoxin/ferredoxin oxidoreductase- like	pyruvate ferredoxin oxidoreductase, alpha subunit	Pyruvate synthase subunit porA	pyruvate flavodoxin/ferredoxin oxidoreductase-like	pyruvate:ferredoxin oxidoreductase alpha subunit	pyruvate synthase subunit porA identified by match to protein family HMM PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase- like protein	NADH dependant phenylglyoxylate	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein KEGG: mma:MM1340 pyruvate synthase alpha subunit	pyruvate ferredoxin oxidoreductase, alpha subunit (O05651) Pyruvate synthase subunit porA (EC 1.2.7.1) (Pyruvate oxidoreductase alpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase alpha subunit) High confidence in function and specificity	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein KEGG: ctc:CTC02526 pyruvate synthase subunit porA	Pyruvate flavodoxin/ferredoxin oxidoreductase-like	Hypothetical protein	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	Pyruvate flavodoxin/ferredoxin oxidoreductase- like protein	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein KEGG: deh:cbdb_A681 pyruvic-ferredoxin oxidoreductase, alpha subunit	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein	Pyruvate:ferredoxin oxidoreductase, alpha subunit	Pyruvate:ferredoxin oxidoreductase, alpha subunit, PorA	
HELPY01082	Pyruvate ferredoxin oxidoreductase, beta subunit	Pyruvate:ferredoxin oxidoreductase beta subunit	Pyruvate ferrodoxin oxidoreductase	Pyruvate:ferredoxin oxidoreductase, beta subunit	identified by similarity to SP:Q51805 pyruvic-ferredoxin oxidoreductase, beta subunit	pyruvic-ferredoxin oxidoreductase, beta subunit	pyruvate synthase beta subunit	Pyruvate:ferredoxin oxidoreductase/2- oxoacid:ferredoxin oxidoreductase, beta subunit	PorB pyruvate:ferredoxin oxidoreductase	Thiamine pyrophosphate enzyme, C-terminal TPP- binding	thiamine pyrophosphate enzyme-like TPP-binding protein PFAM: thiamine pyrophosphate enzyme-like TPP-binding KEGG: sso:SSO2130 Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase beta chain) (porB-like)	pyruvate--ferredoxin oxidoreductase, beta subunit	pyruvate ferredoxin oxidoreductase, beta subunit	Pyruvate synthase subunit porB	thiamine pyrophosphate enzyme-like TPP-binding	thiamine pyrophosphate enzyme-like TPP-binding	pyruvate:ferredoxin oxidoreductase beta subunit	pyruvate synthase subunit porB identified by match to protein family HMM PF02775	Thiamine pyrophosphate enzyme-like TPP-binding	thiamine pyrophosphate enzyme-like TPP-binding	Thiamine pyrophosphate enzyme domain protein TPP- binding	pyruvate:ferredoxin oxidoreductase, beta subunit	thiamine pyrophosphate enzyme domain protein TPP-binding PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding KEGG: mac:MA0031 pyruvate synthase, subunit beta	pyruvate ferredoxin oxidoreductase, beta subunit (Q57714) Pyruvate synthase subunit porB (EC 1.2.7.1) (Pyruvate oxidoreductase beta chain) (POR) (Pyruvic-ferredoxin oxidoreductase beta subunit) High confidence in function and specificity	thiamine pyrophosphate enzyme domain protein TPP-binding PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding KEGG: rfr:Rfer_2185 thiamine pyrophosphate enzyme-like TPP-binding	thiamine pyrophosphate enzyme domain protein TPP-binding PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding KEGG: ctc:CTC02525 pyruvate synthase subunit porB	Excinuclease ABC, subunit B	Thiamine pyrophosphate enzyme domain protein TPP- binding	Pyruvate synthase subunit porB	
HELPY01083	Adenylosuccinate lyase	adenylosuccinate lyase (glutamyl-tRNA synthetase regulatory factor)	Adenylosuccinate lyase	Adenylosuccinate lyase	ADENYLOSUCCINATE LYASE	Adenylosuccinate lyase	CDS_ID OB0741 adenylosuccinate lyase	adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	identified by similarity to EGAD:15453; match to protein family HMM PF00206; match to protein family HMM TIGR00928 adenylosuccinate lyase	Adenylosuccinate lyase	adenylosuccinate lyase	identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928 adenylosuccinate lyase	adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	Adenylosuccinate lyase	identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928 adenylosuccinate lyase	Adenylosuccinate lyase	InterProMatches:IPR004769; Molecular Function: adenylosuccinate lyase activity (GO:0004018), Biological Process: purine ribonucleotide biosynthesis (GO:0009152) adenylosuccinate lyase	
HELPY01084	Outer membrane protein	outer membrane protein Horl	outer membrane protein 3 hypothetical protein	Outer membrane protein Horl	Outer membrane protein	Outer membrane protein HorI	
HELPY01085	UvrABC system protein B	excinuclease ABC subunit B	excinuclease ABC subunit B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	CDS_ID OB2488 excinuclease ABC subunit B	UvrABC system protein B	similar to AE007030-12|AAK45939.1| percent identity: 75 in 701 aa putative xcinuclease ABC subunit B	UvrABC system protein B	excinuclease ABC subunit B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	Repair endonuclease subunit B	UvrABC system protein B	SCC54.26c, partial CDS, probable uvrB, ABC excision nuclease subunit B, len: >113aa; similar to many eg.  SW:UVRB_MICLU uvrB, ABC excision nuclease subunit B from Micrococcus luteus (709 aa) fasta scores; opt: 248, z-score: 280.5, E(): 2.6e-08, (45.9% identity in 111 aa overlap).  SC3C9.01c, uvrB, excinuclease ABC subunit B (fragment), len: >635 aa; highly similar to SW:UVRB_BACSU (EMBL:AF017113) Bacillus subtilis excinuclease ABC subunit B (DinA protein) UvrB or DinA or Uvr aa; fasta scores: opt: 2591 Z-score: 2687.6 bits: 507.5 E(): 4.3e-142; 63.667% identity in 600 aa overlap. Contains Pfam matches to entries PF00270 DEAD, DEAD/DEAH box helicase and PF00271 helicase_C, Helicase conserved C-terminal domain and match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). Also contains a possible coiled-coil region at approx. residues 273..290 ABC excision nuclease subunit B	
HELPY01086	Putative uncharacterized protein	
HELPY01087	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01088	Conserved hypothetical secreted protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative	suppressor/enhancer of lin-12	TPR repeat proteins Hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein	Sel1-like repeat	transcript_id=ENSOCUT00000012359	Sel1-like repeat	transcript_id=ENSETET00000002489	conserved hypothetical protein	Sel1-like	conserved hypothetical protein	Sel1-like protein	cysteine-rich protein X	Sel1	transcript_id=ENSFCAT00000004807	transcript_id=ENSOGAT00000013068	conserved hypothetical protein Function unclear	Putative exported protein	Sel1 domain protein repeat-containing protein PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein KEGG: rpc:RPC_2358 Sel1	conserved hypothetical protein; TPR repeat Evidence 4 : Homologs of previously reported genes of unknown function	Sel1	Sel1 domain protein repeat-containing protein	FOG: TPR repeat, SEL1 subfamily	
HELPY01089	Gamma-glutamyltranspeptidase	Gamma-glutamyltranspeptidase	CDS_ID OB0203; gamma-glutamyltransferase family depolymerization of the capsular polymer	gamma-glutamyltranspeptidase	Residues 10 to 589 of 589 are 99 pct identical to residues 1 to 580 of a 580 aa protein from Escherichia coli K12 ref: NP_417904.1 gamma-glutamyltranspeptidase	Similar to gamma-glutamyltranspeptidase	Probable gamma-glutamyltranspeptidase signal peptide protein	Gamma-glutamyltranspeptidase	identified by similarity to EGAD:45768; match to protein family HMM PF01019 gamma-glutamyltranspeptidase	Putative gamma-glutamyltranspeptidase	Gamma-glutamyltransferase	IPR000101: Peptidase T3, gamma-glutamyltranspeptidase gamma-glutamyltranspeptidase	similar to Salmonella typhi CT18 gamma-glutamyltranspeptidase precursor gamma-glutamyltranspeptidase precursor	hypothetical protein, similar to gamma-glutamyltranspeptidase precursor	GAMMA-GLUTAMYLTRANSPEPTIDASE	Gamma-glutamyltranspeptidase	Ortholog of S. aureus MRSA252 (BX571856) SAR0202 putative gamma-glutamyltranspeptidase	hypothetical protein, similar to gamma-glutamyltranspeptidase precursor	Gamma-glutamyltranspeptidase	go_component: intracellular [goid 0005622]; go_function: protein-glutamine gamma-glutamyltransferase activity [goid 0003810]; go_process: glutathione catabolism [goid 0006751]; go_process: cell wall organization and biogenesis [goid 0007047] gamma-glutamyltranspeptidase	Gamma-glutamyltranspeptidase	hypothetical protein, similar to gamma-glutamyltranspeptidase	Gamma-glutamyltranspeptidase	Similar to Bacillus subtilis gamma-glutamyltranspeptidase precursor Ggt SW:GGT_BACSU (P54422) (587 aa) fasta scores: E(): 8.5e-75, 38.532% id in 545 aa, and to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt SW:GGT_ECOLI (P18956) (580 aa) fasta scores: E(): 1.6e-57, 34.615% id in 546 aa. CDS is truncated at the N-terminus and extended at the C-terminus in comparison to the B. subtilis and E.  coli proteins putative gamma-glutamyltranspeptidase	Code: E; COG: COG0405 gamma-glutamyltranspeptidase	identified by similarity to EGAD:45768; match to protein family HMM PF01019; match to protein family HMM TIGR00066 gamma-glutamyltranspeptidase	similar to gi|27469007|ref|NP_765644.1| [Staphylococcus epidermidis ATCC 12228], percent identity 65 in 538 aa, BLASTP E(): 0.0 putative gamma-glutamyltranspeptidase precursor	Code: E; COG: COG0405 gamma-glutamyltranspeptidase	Gamma-glutamyltranspeptidase	
HELPY01090	Flagellar hook-associated protein 1	Flagellar biosynthesis, hook-filament junction protein 1	CDS_ID OB2507 flagellar hook-associated protein 1	Flagellar hook-associated protein FlgK	Flagellar hook-associated protein FlgK	Flagellar hook-associated protein 1	Flagellar hook-associated protein	Hook-associated protein 1 FlgK	Lin0713 protein	Flagellar hook-associated protein 1	Flagellar hook-associated protein 1	Probable flagellar hook-associated protein 1	Flagellar hook-associated protein 1	identified by similarity to SP:P39810; match to protein family HMM PF00460 flagellar hook-associated protein FlgK, putative	InterProMatches:IPR001444; Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: flagellum (sensu Bacteria) (GO:0009288) flagellar hook-associated protein 1	flagellar hook-associated protein HAP1 flagellar hook-associated protein 1 FlgK	IPR001444: Flagellar basal body rod protein; IPR002371: Flagellar hook-associated protein flagellar biosynthesis, hook-filament junction protein 1	similar to Salmonella typhi CT18 flagellar hook-associated protein 1 flagellar hook-associated protein 1	Flagellar hook-associated protein FlgK	FLAGELLAR HOOK-ASSOCIATED PROTEIN 1	Flagellar hook-associated protein 1	Flagellar hook-associated protein	identified by similarity to SP:P33235; match to protein family HMM PF06429 flagellar hook-associated protein 1-related protein	flagellar hook-associated protein 1	Flagellar hook-associated protein	Flagellar hook-associated protein 1	Protein of unknown function DUF1078	Protein of unknown function DUF1078	Code: N; COG: COG1256 flagellar hook-filament junction protein 1	
HELPY01091	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01092	Cytosine-specific methyltransferase	Putative modification methylase	Site-specific DNA methylase	C-5 cytosine-specific DNA methylase family protein	type II DNA modification enzyme	C-5 cytosine-specific DNA methylase (P34877) Modification methylase ScrFIA (EC 2.1.1.37) (Cytosine-specific methyltransferase ScrFIA) (M.ScrFIA) (M.ScrFI-A) High confidence in function and specificity	putative DNA methylase	Putative modification methylase	Probable type II modification methyltransferase	Cytosine-specific methyltransferase	DNA (cytosine-5-)-methyltransferase Code: L; COG: COG0270	Cytosine-specific methyltransferase	DNA-cytosine methyltransferase	Cytosine-specific methyltransferase	Conserved domain protein	Cytosine-specific methyltransferase	pseudo	C-5 cytosine-specific DNA methylase	Type II DNA modification enzyme	Type II DNA modification enzyme	Cytosine specific DNA methyltransferase	DNA-cytosine methyltransferase	Cytosine-specific methyltransferase	Cytosine-specific methyltransferase	Cytosine-specific methyltransferase	DNA-cytosine methyltransferase KEGG: rbe:RBE_1392 site-specific DNA methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase	DNA-cytosine methyltransferase TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: tdn:Suden_1565 DNA (cytosine-5-)- methyltransferase	
HELPY01093	Putative uncharacterized protein	flgM protein	FlgM protein hypothetical protein	FlgM protein	FlgM protein	FlgM protein	

HELPY01094	FKBP-type peptidyl-prolyl cis-trans isomerase slyD	FKBP-type peptidyl-prolyl cis-trans isomerase slyD	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Residues 1 to 196 of 196 are 100 pct identical to residues 1 to 196 of a 196 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289896.1 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	IPR001179: Peptidylprolyl isomerase, FKBP-type FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)	similar to Salmonella typhi CT18 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP-type peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	FKBP-type peptidyl-prolyl cis-trans isomerase slyD	Peptidyl-prolyl cis-trans isomerase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme FKBP-type peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	peptidyl-prolyl cis-trans isomerase	PPIase; rotamase; Similar to: HI0699, SLYD_HAEIN FKBP-type peptidyl-prolyl cis-trans isomerase SlyD	Similar to Porphyromonas gingivalis W83 peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type or PG1315 SWALL:AAQ66387 (EMBL:AE017176) (190 aa) fasta scores: E(): 2.1e-26, 44.84% id in 194 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri FKBP-type peptidyl-prolyl cis-trans isomerase SlyD or B3349 or C4123 or Z4707 or ECS4200 or SF3367 or S4395 SWALL:SLYD_ECOLI (SWALL:P30856) (196 aa) fasta scores: E(): 5.2e-09, 31.4% id in 207 aa putative isomerase	FKBP-type peptidyl-prolyl cis-trans isomerases 2 SlpA protein	Peptidyl-prolyl cis-trans isomerase	FKBP-type peptidyl-prolyl cis-trans isomerases	Peptidyl-prolyl cis-trans isomerase	peptidyl-prolyl cis-trans isomerase	FkbP-type peptidyl-prolyl cis-trans isomerase	FKBP-type peptidyl-prolyl cis-trans isomerase	
HELPY01095	Putative uncharacterized protein	Putative uncharacterized protein	Putative	TPR repeat	periplasmic protein	TPR repeat-containing protein identified by match to protein family HMM PF07719	conserved hypothetical protein hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative periplasmic protein	Putative uncharacterized protein	TPR repeat-containing protein	TPR repeat-containing protein	Putative uncharacterized protein	Tol-pal system protein YbgF	Periplasmic protein	Tol-pal system protein YbgF	TPR repeat protein	Putative uncharacterized protein	Putative uncharacterized protein	TPR domain protein, putative	Putative uncharacterized protein	Tetratricopeptide TPR_2 repeat protein	
HELPY01096	Peptidoglycan associated lipoprotein	Peptidoglycan-associated lipoprotein	Peptidoglycan-associated lipoprotein	Peptidoglycan-associated lipoprotein	Outer membrane protein P6	Putative Outer membrane protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type ph : phenotype peptidoglycan-associated lipoprotein precursor	OmpA/MotB	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8763928, 12423784; Product type f : factor required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA	OmpA/MotB	outer membrane protein A Previously sequenced as Bordetella avium outer membrane protein a precursor ompA SWALL:OMPA_BORAV (SWALL:Q05146) (194 aa) fasta scores: E(): 1.7e-71, 100 id in 194 aa	outer membrane protein, porin-associated lipoprotein	OmpA/MotB	OmpA/MotB precursor	Peptidogycan-associated lipoprotein	peptidoglycan-associated lipoprotein precursor	OmpA/MotB domain protein precursor	Outer membrane protein and related peptidoglycan-associated (lipo)proteins	OmpA family protein	OmpA/MotB	peptidoglycan-associated lipopeptide	hypothetical protein COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins	OmpA/MotB	OmpA/MotB domain protein PFAM: OmpA/MotB domain protein KEGG: plt:Plut_0615 outer membrane protein and related peptidoglycan-associated (LipO)proteins-like	OmpA/MotB domain protein PFAM: OmpA/MotB domain protein KEGG: cch:Cag_1911 OmpA domain protein	OmpA/MotB	Outer membrane protein and related peptidoglycan- associated lipo protein	Omp18 identified by match to protein family HMM PF00691	peptidoglycan-associated lipoprotein precursor identified by match to protein family HMM PF00691	
HELPY01097	Protein tolB	Protein tolB	Protein tolB	identified by match to protein family HMM PF04052 TolB, putative	identified by similarity to SP:Q9ZK86; match to protein family HMM PF04052 tolB protein, putative	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark TolB	Protein tolB	Protein tolB	TolB protein precursor	COG0823 TolB periplasmic component of the Tol biopolymer transport system TolB protein precursor	Protein tolB	periplasmic component; COG0823 Tol biopolymer transport system	Similar to: HI0382, TOLB_HAEIN TolB	Protein tolB	TolB protein	TolB protein	identified by similarity to SP:P19935; match to protein family HMM PF04052; match to protein family HMM PF07676 tolB protein	identified by match to protein family HMM PF04052; match to protein family HMM PF07676 tolB protein	TolB, N-terminal:WD40-like Beta Propeller	TolB, N-terminal:WD40-like Beta Propeller	TolB, N-terminal:TolB, N-terminal	TolB	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8921895, 7744736, 11994151; Product type t : transporter required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA	Probable TolB protein precursor	Protein tolB 2	probable tolB-related transport protein	TolB-like	TolB-like	Twin-arginine translocation pathway signal	
HELPY01098	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein similar to putative hypothetical protein jhp1056 -Helicobacter pylori (strain J99) High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY01100	Putative biopolymer transport protein exbD-like 1	TOLR PROTEIN	tolR protein	Biopolymer transport protein ExbD/TolR	identified by match to protein family HMM PF02472 biopolymer transport protein, ExbD/TolR family	TolR protein	identified by similarity to SP:P18784; match to protein family HMM PF02472 TonB system transport protein ExbD, putative	Protein TolR	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark biopolymer transport protein	Biopolymer transport protein ExbD-like	Biopolymer transport protein	TolR protein	Putative biopolymer transport exbD-like protein 1	TolR protein	COG0848 TolR biopolymer transport protein	Biopolymer transport protein TolR	biopolymer transport protein	TolR protein	tolR protein	identified by match to protein family HMM PF02472 transport protein ExbD PA0199	Biopolymer transport protein ExbD/TolR	TolR protein	Biopolymer transport protein ExbD/TolR	TolR protein	Citation: PMID: 11200223 J Mol Microbiol Biotechnol.  2001 Jan;3(1):113-22. ExbD/TolR family protein	Biopolymer transport protein ExbD/TolR	biopolymer transport exbD-related transmembrane protein	Biopolymer transport protein ExbD/TolR	Biopolymer transport protein ExbD/TolR	
HELPY01101	Putative biopolymer transport protein exbB-like 1	Biopolymer transport protein	Putative biopolymer transport exbB-like protein 1	uptake of enterochelin; tonB-dependent uptake of B colicins; Code: U; COG: COG0811 ExbB	MotA/TolQ/ExbB proton channel	biopolymer transport protein	MotA/TolQ/ExbB proton channel	ExbB	biopolymer transport protein (O25755) Putative biopolymer transport exbB-like protein High confidence in function and specificity	MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618	Biopolymer transport protein, ExbB/TolQ family	Biopolymer transport protein, ExbB/TolQ family	MotA/TolQ/ExbB proton channel family protein	MotA/TolQ/ExbB proton channel	ExbB/tolQ family transport protein	Biopolymer transport protein ExbB	ExbBTolQ family transport protein	Putative uncharacterized protein	ExbBTolQ family transport protein	MotA/TolQ/ExbB proton channel	Biopolymer transport protein	TonB-system energizer ExbB	TonB-system energizer ExbB	Biopolymer transport protein	Exbb	TonB system transport protein ExbB	Biopolymer transport accessory protein ExbB	Biopolymer transport ExbB protein; putative membrane protein	
HELPY01102	ATP synthase epsilon chain	ATP synthase epsilon chain	ATP synthase epsilon chain	CDS_ID OB2974 H(+)-transporting ATP synthase epsilon chain	ATP synthase epsilon subunit (atp-9)	ATP synthase epsilon chain	ATP synthase epsilon chain	ATP synthase epsilon chain	identified by similarity to EGAD:7914; match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216 ATP synthase F1, epsilon subunit	ATP synthase epsilon chain	identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216 ATP synthase F1, epsilon subunit	InterProMatches:IPR001469; Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469), Molecular Function: hydrogen-transporting ATP synthase activity, rotational mechanism (GO:0046933) ATP synthase (subunit epsilon)	F0F1-type ATP synthase epsilon chain	ATP synthase epsilon chain	ATP synthase epsilon chain	similar to BR1798, ATP synthase F1, epsilon subunit AtpC, ATP synthase F1, epsilon subunit	FoF1-ATP synthase epsilon subunit	ATP synthase epsilon chain	Ortholog of S. aureus MRSA252 (BX571856) SAR2190 ATP synthase epsilon chain	FoF1-ATP synthase epsilon subunit	identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216 ATP synthase F1, epsilon subunit	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme membrane-bound ATP synthase , F1 sector, epsilon-subunit	ATP synthase epsilon chain 1	Proton-translocating ATPase, F1 sector, epsilon-subunit	ATP synthase F1 sector epsilon subunit; Similar to: HI0478, ATPE_HAEIN ATP synthase epsilon chain	F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit) AtpC protein	Similar to ATPE_ECOLI (P00832) ATP synthase epsilon chain from E. coli (138 aa). FASTA: opt: 262 Z-score: 329.5 E(): 1.8e-10 Smith-Waterman score: 262; 33.858 identity in 127 aa overlap ATP synthase epsilon chain	F0F1-type ATP synthase, epsilon subunit	ATP synthase F1, epsilon subunit	
HELPY01103	ATP synthase subunit beta	F0F1-type ATP synthasebeta chain	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase CF1 subunit b	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	CDS_ID OB2975 H(+)-transporting ATP synthase beta chain	ATP synthase subunit beta 1	similar to AX065635-1|CAC26057.1| percent identity: 95 in 481 aa H+-ATPase beta subunit	ATP synthase subunit beta	ATP synthase beta subunit	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	2SC6G5.17, atpD, ATP synthase beta chain (EC 3.6.1.34), len: 478aa; strongly similar to many eg.  SW:P37809 (ATPB_BACSU) ATP synthase beta chain from Bacillus subtilis (473 aa) fasta scores; opt: 2051, z-score: 2236.9, E(): 0, 67.7% identity in 470 aa overlap.  Identical to SW:P50004 (ATPB_STRLI) ATP synthase beta chain from Streptomyces lividans. Contains Pfam match to entry PF00006 ATP-synt_ab, ATP synthase alpha/beta family, Pfam match to entry PF00306 ATP-synt_ab_C, ATP synthase ab C terminal, Prosite match to PS00152 ATP synthase alpha and beta subunits signature and Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). ATP synthase beta chain	ATP synthase subunit beta	
HELPY01104	ATP synthase gamma chain	F0F1-type ATP synthasegamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	CDS_ID OB2976 H(+)-transporting ATP synthase gamma chain	ATP synthase gamma chain	similar to AB048368-7|BAB13359.1| percent identity: 88 in 326 aa H+-ATPase gamma subunit	ATP synthase gamma chain	ATP synthase gamma subunit	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	2SC6G5.16, atpG, ATP synthase gamma chain (EC 3.6.1.34), len: 305aa; strongly similar to many eg.  SW:P00837 (ATPG_ECOLI) ATP synthase gamma chain from Escherichia coli (287 aa) fasta scores; opt: 591, z-score: 655.5, E(): 4.9e-29, 37.4% identity in 289 aa overlap.  Almost identical to SW:P50007 (ATPG_STRLI) ATP synthase gamma chain from Streptomyces lividans. Contains Pfam match to entry PF00231 ATP-synt, ATP synthase and Prosite match to PS00153 ATP synthase gamma subunit signature. ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	Residues 1 to 287 of 287 are 100 pct identical to residues 1 to 287 of a 287 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290372.1 membrane-bound ATP synthase, F1 sector, gamma-subunit	ATP synthase gamma chain	ATP synthase gamma chain	
HELPY01105	ATP synthase subunit alpha	F0F1-type ATP synthasealpha chain	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha 1	ATP synthase CF1 subunit a	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	CDS_ID OB2977 H(+)-transporting ATP synthase alpha chain	ATP synthase subunit alpha 1	similar to Z73419-26|CAA97741.1| percent identity: 68 in 546 aa H+-ATPase alpha subunit	ATP synthase subunit alpha	ATP synthetase alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	2SC6G5.15, atpA, ATP synthase alpha chain, len: 529aa; strongly similar to many eg. SW:P37808 (ATPA_BACSU) ATP synthase alpha chain from Bacillus subtilis (501 aa) fasta scores; opt: 1900, z-score: 2061.3, E(): 0, 58.1% identity in 513 aa overlap. Identical to SW:P50001 (ATPA_STRLI) ATP synthase alpha chain from Streptomyces lividans. Contains Pfam match to entry PF00422 ATP-synt_A-c, ATP synthase Alpha chain, C terminal, Pfam match to entry PF00006 ATP-synt_ab, ATP synthase alpha/beta family, Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop) and Prosite match to PS00152 ATP synthase alpha and beta subunits signature ATP synthase alpha chain	ATP synthase subunit alpha	
HELPY01106	ATP synthase F1, subunit delta	Putative ATP synthase F1, subunit delta	ATP synthase F1, subunit delta	ATP synthase F1, subunit delta High confidence in function and specificity	F0F1 ATP synthase subunit delta	ATP synthase F1, subunit delta	ATP synthase	ATP synthase F1 subunit delta	
HELPY01107	ATP synthase subunit b	ATP synthase subunit b	ATP synthase B chain	H+-transporting two-sector ATPase, B/B' subunit	ATP synthase F0, subunit b	ATP synthase subunit B	ATP synthase F0, subunit b (Q9ZK77) ATP synthase B chain (EC 3.6.3.14) High confidence in function and specificity	ATP synthase F0, B' subunit identified by match to protein family HMM PF00430	F0F1-type ATP synthase, B subunit	F0F1-type ATP synthase, B subunit	ATP synthase F0, B' subunit	ATP synthase F0 sector B subunit	ATP synthase F0 sector, subunit B	Phosphoserine phosphatase	ATP synthase subunit B	ATP synthase subunit B	F0F1 ATP synthase subunit B	ATP synthase F0. subunit b	ATP synthase B chain	ATP synthase F0 sector, B subunit	ATP synthase subunit b	ATP synthase F0, subunit b; putative signal peptide	
HELPY01108	ATP synthase F0, subunit b'	ATP synthase subunit b	FoF1-type ATP synthase	ATP synthase B'	identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144 ATP synthase F0, B subunit	ATP synthase F0, B' subunit identified by similarity to SP:P12410; match to protein family HMM PF00430	ATP synthase F0, B' subunit identified by similarity to SP:P12410; match to protein family HMM PF00430	H+-transporting two-sector ATPase, B/B' subunit	ATP synthase F0, subunit b'	ATP synthase subunit B identified by match to protein family HMM PF00430	ATP synthase F0, subunit b' High confidence in function and specificity	ATP synthase F0, B' subunit identified by match to protein family HMM PF00430	F0F1-type ATP synthase, B' subunit	F0F1-type ATP synthase, B' subunit	ATP synthase F0, B' subunit	ATP synthase B chain	ATP synthase F0, B subunit	ATP synthase F0 sector B' subunit	ATP synthase F0 sector, B' subunit	ATP synthase subunit B	ATP synthase subunit B	ATP synthase F0, B subunit	ATP synthase subunit B	ATP synthase B chain	F0F1 ATP synthase subunit B'	ATP synthase F0. subunit b'	ATP synthase B chain	Putative H+-transporting two-sector ATPase, B/B' subunit	ATP synthase F0 sector, B' subunit	
HELPY01109	Probable chromosome-partitioning protein parB	Putative chromosome segregation protein	Stage 0 sporulation protein J, putative	Probable chromosome partitioning protein ParB	CHROMOSOME PARTITIONING PROTEIN PARB	Putative SpoJ	ParB family protein	Putative chromosome partitioning protein	chromosome partitioning protein, ParB	ParB family protein	Probable chromosome-partitioning protein parB	Chromosome partitioning protein, ParB	Stage 0 sporulation J, ParB family of DNA-binding proteins	Predicted Transcriptional regulator	Chromosome partitioning protein ParB	ParB family protein	Probable chromosome-partitioning protein parB	Partition protein ParB homolg	Chromosome partitioning protein, parB	ParB	Probable chromosome-partitioning protein parB	Putative chromosome partitioning protein parb	similar to partition protein ParB hypothetical protein	conserved gene chromosome partitioning protein ParB (SpoOJ)	similar to partition protein ParB hypothetical protein	identified by similarity to OMNI:SA2735; match to protein family HMM PF02195; match to protein family HMM TIGR00180 chromosome partioning protein, ParB family	ParB Chromosome partitioning protein	identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180 chromosome partitioning protein parB	Chromosome partitioning protein ParB	
HELPY01110	SpoOJ regulator	Putative chromosome partitioning protein	Sporulation initiation inhibitor protein Soj	Chromosome partitioning protein ParA	CHROMOSOME PARTITIONING PROTEIN PARA	ParA family protein	Putative chromosome partitioning protein	CDS_ID OB3487 sporulation initiation inhibitor	similar to AE007194-7|AAK48403.1| percent identity: 61 in 293 aa putative chromosome partitioning protein ParA	Putative partition protein	chromosome partitioning protein, ParA	ParA family ATPase	Chromosome partitioning protein	Chromosome partitioning protein, ParA	Chromosome partitioning MinD-family ATPase, SOJ	Chromosome partitioning protein	StH24.08, possible partitioning or sporulation protein, len: 275 aa; previously sequenced as TR:O07328 (EMBL:Y16311) Streptomyces coelicolor hypothetical protein (255 aa), but with a different stop codon position.  Similar to many e.g. SW:SOJ_BACSU (EMBL:D26185), SOJ, Bacillus subtilis sporulation protein (253 aa), fasta scores; opt: 899 z-score: 1077.0 E(): 0, 56.6% identity in 251 aa overlap, TR:O05189 (EMBL:U87804), parA, Caulobacter crescentus chromosome partitioning protein (266 aa) (49.2% identity in 248 aa overlap) and TR:O53596 (EMBL:AL021426), parB, Mycobacterium tuberculosis hypothetical protein (347 aa) (64.3% identity in 249 aa overlap). Contains Pfam match to entry PF00991 ParA, ParA family ATPase, score 123.30, E-value 4.4e-33. Contains probable coiled-coil from 86 to 114 (29 residues) (Max score: 1.424, probability 0.80) putative partitioning or sporulation protein	ATPases involved in chromosome partitioning	Chromosome partitioning protein ParA	ParA family protein	SOJ PROTEIN	Chromosome partitioning protein parA	Putative chromosome partitioning protein para	Highly similar to chromosome partitioning protein ParA family hypothetical protein	conserved gene, chromosome partitioning protein ParA-like sporulation initiation inhibitor protein Soj	Highly similar to chromosome partitioning protein ParA family hypothetical protein	Chromosome partitioning protein, membrane- associated ATPase	identified by similarity to SP:O05189; match to protein family HMM PF01656 chromosome partitioning protein ParA	Chromosome partitioning protein, ParA family ATPase	
HELPY01111	Biotin operon repressor/biotin acetyl coenzyme A carboxylase synthetase	Biotin operon repressor BirA	Putative BIOTIN ACTIVATION PROTEIN	Biotin--acetyl-CoA-carboxylase ligase	biotin acetyl coenzyme A carboxylase synthetase	biotin-[acetyl-CoA-carboxylase] ligase identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121	biotin operon repressor BirA (P37416) BirA bifunctional protein [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)] High confidence in function and specificity	biotin--acetyl-CoA-carboxylase ligase identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121	Biotin-[acetyl-CoA-carboxylase] ligase	Biotin-[acetyl-CoA-carboxylase] ligase	Biotin--acetyl-CoA-carboxylase ligase	Biotin--protein ligase	Biotin--acetyl-CoA-carboxylase ligase	Biotin-[acetyl-CoA-carboxylase] ligase	Biotin-[acetyl-CoA-carboxylase] ligase	Biotin-[acetyl-CoA-carboxylase] ligase	Biotin--protein ligase	Biotin acetyl coenzyme A carboxylase synthetase	Biotin-[acetyl-CoA-carboxylase] ligase	Biotin--acetyl-CoA-carboxylase ligase	Bifunctional biotin operon repressor , biotin acetyl coenzyme A carboxylase synthetase	Biotin/acetyl-CoA-carboxylase ligase	BirA bifunctional protein	
HELPY01112	Methionyl-tRNA formyltransferase	methionyl-tRNA formyltransferase	methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	CDS_ID OB1506 methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	similar to AL583918-154|CAC30060.1| percent identity: 50 in 312 aa putative methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	methionyl-tRNA formyltransferase (EC 2.1.2.9)	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	SCL6.30c, fmt, methionyl-tRNA formyltransferase, len: 310 aa; highly similar to SW:FMT_MYCTU (EMBL:Z80108) Mycobacterium tuberculosis methionyl-tRNA formyltransferase (EC 2.1.2.9) Fmt, 312 aa; fasta scores: opt: 1119 z-score: 1259.3 E(): 0; 56.3% identity in 311 aa overlap and to SW:FMT_ECOLI (EMBL:X63666;) Escherichia coli methionyl-tRNA formyltransferase (EC 2.1.2.9) Fmt, 314 aa; fasta scores: opt: 733 z-score: 827.4 E(): 0; 38.9% identity in 311 aa overlap. Contains Pfam match to entry PF00551 formyl_transf, Formyl transferase methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	
HELPY01113	Putative uncharacterized protein	Putative uncharacterized protein VPA1255	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to GP:19881228 RloC protein, putative	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark hypothetical protein	Putative	identified by similarity to OMNI:NTL01HP01062 conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	similar to Uncharacterized protein conserved in bacteria	No significant database matches to the full length CDS. Similar to internal regions of Saccharomyces cerevisiae intracellular protein transport protein Uso1 SW:USO1_YEAST (P25386) (1790 aa) fasta scores: E(): 6.7e-06, 21.105% id in 706 aa, and to Plasmodium chabaudi repeat organellar protein TR:Q25662 (EMBL:U43145) (1939 aa) fasta scores: E(): 0.00059, 23.381% id in 556 aa hypothetical protein	conserved hypothetical protein	hypothetical protein	conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein KEGG: bps:BPSL3258 hypothetical protein	conserved hypothetical protein Function unclear	conserved hypothetical protein KEGG: hpj:jhp1070 hypothetical protein	conserved hypothetical protein	Hypothetical protein	Cation transport ATPase	Hypothetical protein	hypothetical protein	conserved hypothetical protein KEGG: rso:RSc2619 hypothetical protein	Putative uncharacterized protein	KEGG: vpa:VPA1255 hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative metallophosphoesterase	Putative uncharacterized protein	
HELPY01114	Putative uncharacterized protein	Putative uncharacterized protein	Predicted chromosome segregation ATPase	identified by similarity to OMNI:NTL01HP01063 conserved hypothetical protein	Putative	conserved hypothetical protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein similar to HP1143 Function unclear	conserved hypothetical protein	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	






HELPY01118	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	CDS_ID OB1537 50S ribosomal protein L19	50S ribosomal protein L19	similar to Z74024-35|CAA98342.1| percent identity: 78 in 113 aa putative 50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	
HELPY01119	tRNA (guanine-N(1)-)-methyltransferase	tRNA methyltransferase	tRNA (guanine-N(1)-)-methyltransferase (M1G-methyltransferase)	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	CDS_ID OB1536 tRNA methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	similar to AP003361-249|BAB57402.1| percent identity: 40 in 273 aa putative tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	
HELPY01120	Ribosome maturation factor rimM	Putative uncharacterized protein	Probable 16S rRNA processing protein rimM	Probable 16S rRNA-processing protein rimM	16S rRNA processing protein	16S rRNA processing protein RimM identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273	16S rRNA processing protein RimM 16S rRNA processing protein rimM High confidence in function and specificity	16S rRNA processing protein RimM identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273	16S rRNA processing protein RimM	16S rRNA processing protein RimM	Probable 16S rRNA-processing protein rimM	Putative 16S rRNA processing protein	16S rRNA processing protein	16S rRNA processing protein RimM	16S rRNA processing protein RimM	16S rRNA processing protein RimM	16S rRNA processing protein	16S rRNA processing protein	16S rRNA processing protein RimM	16S rRNA processing protein	16S rRNA processing protein RimM	16S rRNA processing protein RimM	
HELPY01121	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein Conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative RNA-binding protein	
HELPY01122	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	CDS_ID OB1532 30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	Residues 1 to 82 of 82 are 100 pct identical to residues 1 to 82 of a 82 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289162.1 30S ribosomal subunit protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	
HELPY01123	Signal recognition particle protein	signal recognition particle protein SRP54	signal recognition particle GTPase	Putative signal recognition particle protein	Putative signal recognition particle-inhibited division protein	Signal recognition particle protein	Signal recognition particle protein	Signal recognition particle GTPase	SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54	Signal recognition particle GTPase	Signal recognition particle protein	Signal recognition particle protein	Signal recognition particle protein	Signal recognition particle protein	CDS_ID OB1531 signal recognition particle	SIGNAL RECOGNITION PARTICLE PROTEIN	similar to Z97369-5|CAB10614.1| percent identity: 66 in 540 aa putative signal recognition particle protein	Probable signal recognition particle chain ffh	signal recognition particle protein	Signal recognition particle protein	Signal recognition particle protein	Signal recognition particle, subunit FFH/SRP54	Signal recognition particle protein	Signal recognition particle GTPase Ffh	Signal recognition particle, subunit SRP54	Signal recognition particle	Signal recognition particle protein	Signal recognition particle	Signal recognition particle protein	
HELPY01124	Valyl-tRNA synthetase	valyl-tRNA synthetase	valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	CDS_ID OB2061 valyl-tRNA synthetase	Valyl-tRNA synthetase	similar to AL139298-26|CAB75396.1| percent identity: 58 in 896 aa putative valyl-tRNA synthetase	Valyl-tRNA synthetase	valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	SCC88.26c, valS, valyl tRNA synthetase, len: 874 aa; C-terminal region identical to the previously sequenced SW:SYV_STRCO (EMBL:Y13070) Streptomyces coelicolor valyl-tRNA synhtetase (EC 6.1.1.9) ValS (fragment), 258 aa and similar to TR:Q9X2D7 (EMBL:AE001819) Thermotoga maritima valyl tRNA synthetase, 865 aa; fasta scores: opt: 2710 z-score: 3059.0 E(): 0; 47.7% identity in 874 aa overlap and to SW:SYV_BACST (EMBL:M16318) Bacillus stearothermophilus valyl-tRNA synthetase (EC 6.1.1.9) (valine-tRNA ligase) ValS, 880 aa; fasta scores: opt: 2596 z-score: 2930.0 E(): 0; 48.5% identity in 877 aa overlap. Contains Pfam match to entry PF00133 tRNA-synt_1, tRNA synthetases class I (I, L, M and V) and match to Prosite entry PS00178 Aminoacyl-transfer RNA synthetases class-I signature valyl tRNA synthetase	Valyl-tRNA synthetase	
HELPY01125	Flagellar assembly factor fliW 1	Flagellar assembly factor fliW 2	Putative	hypothetical protein	conserved hypothetical protein Function unclear	Flagellar assembly protein FliW	Putative uncharacterized protein	Flagellar assembly protein FliW	
HELPY01126	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	CDS_ID OB1093 undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase	similar to Z95388-23|CAB08640.1| percent identity: 51 in 358 aa peptidoglycan biosynthesis protein MurG	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	SC4A10.17c, murG, probable UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, len: 364 aa; previously sequenced as TR:Q9ZBA5 (EMBL:U10879), MurG, Streptomyces coelicolor UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (364 aa) and identical to that sequence.  Similar to many e.g. TR:O07109 (EMBL:U94707), MurG, Enterococcus faecalis UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (363 aa), fasta scores; opt: 648 z-score: 711.4 E(): 2.8e-32, 33.2% identity in 365 aa overlap putative UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	Residues 1 to 355 of 355 are 99 pct identical to residues 1 to 355 of a 355 aa protein from Escherichia coli K12 ref: NP_414632.1 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	
HELPY01127	Outer membrane protein	outer membrane protein HopI	outer membrane protein 24 Conserved hypothetical protein	Outer membrane protein HopI	Outer membrane protein	Outer membrane protein HopI	
HELPY01128	Outer membrane protein	Putative Outer membrane protein	outer membrane protein HopL	outer membrane protein 25 Conserved hypothetical protein	Putative outer membrane protein	Outer membrane protein HopL	Outer membrane protein HopL	
HELPY01129	Pyrroline-5-carboxylate reductase	Putative pyrroline carboxylate reductase	Putative pyrroline carboxylate reductase	Pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	similar to U31225-1|AAC44172.1| percent identity: 76 in 270 aa pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	Lin0414 protein	Residues 1 to 269 of 269 are 100 pct identical to residues 1 to 269 of a 269 aa protein from Escherichia coli K12 ref: NP_414920.1 pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	pyrroline carboxylate reductase	Pyrroline-5-carboxylate reductase	identified by match to protein family HMM PF01089; match to protein family HMM TIGR00112 pyrroline-5-carboxylate reductase	InterProMatches:IPR000304; proline biosynthesis,Molecular Function: pyrroline-5-carboxylate reductase activity (GO:0004735), Biological Process: proline biosynthesis (GO:0006561) pyrroline-5-carboxylate reductase	pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	IPR000304: Delta 1-pyrroline-5-carboxylate reductase pyrroline-5-carboxylate reductase	similar to Salmonella typhi CT18 pyrroline-5-carboxylate reductase pyrroline-5-carboxylate reductase	Pyrroline-5-carboxylate reductase	Putative uncharacterized protein gbs0171	Pyrroline-5-carboxylate reductase	identified by match to PFAM protein family HMM PF01089 pyrroline-5-carboxylate reductase	Putative pyrroline carboxylate reductase	
HELPY01130	Cell filamentation protein	Induced in stationary phase, recognized by rpoS, affects cell division	Residues 1 to 200 of 200 are 99 pct identical to residues 1 to 200 of a 200 aa protein from Escherichia coli K12 ref: NP_417820.1 induced in stationary phase, recognized by rpoS, affects cell division	Cell filamentation protein Fic-related protein	Putative cAMP-induced cell filamentation protein	Hypothetical protein	induced in stationary phase, recognized by rpoS, affects cell division; Code: D; COG: COG2184 Fic	induced in stationary phase, recognized by rpoS, affects cell division; Code: D; COG: COG2184 Fic	cell filamentation protein	Fic protein family identified by match to protein family HMM PF02661	Cell filamentation protein fic	mobilization/cell filamentation proteins-like	cell filamentation protein Fic High confidence in function and specificity	Protein involved in cell division	Cell filamentation protein fic Code: D; COG: COG2184	Protein involved in cell division	cell filamentation protein Fic	Hypothetical protein	probable cell filamentation protein	Cell filamentation protein	Cell filamentation protein Fic	cell filamentation protein Fic-related protein Code: D; COG: COG2184	Stationary-phase protein, cell division	Cell filamentation protein Fic	Filamentation induced by cAMP protein Fic	Cell filamentation protein Fic	Mobilization/cell filamentation protein-like protein	Filamentation induced by cAMP protein Fic	Putative uncharacterized protein	
HELPY01131	Putative metalloprotease HP_1160	Putative metalloprotease BMEI1974	Putative metalloprotease VP0731	Putative metalloprotease MYPU_3780	Putative metalloprotease CBU_0567	Putative metalloprotease Lxx14600	Putative metalloprotease BH1363	Putative metalloprotease VV1_0268	Putative metalloprotease LIC_12105	Putative metalloprotease YPO2618/y1193/YP_1095	Putative metalloprotease SAV1570	Putative metalloprotease WIGBR4470	identified by similarity to GP:28974225; match to protein family HMM PF02130; match to protein family HMM TIGR00043 conserved hypothetical protein TIGR00043	Conserved hypothetical protein	metal-dependent hydrolase	IPR002036: Protein of unknown function UPF0054 putative metal-dependent hydrolase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative metalloprotease HH_1232	similar to BR2156, conserved hypothetical protein TIGR00043 conserved hypothetical protein TIGR00043	conserved hypothetical protein	Hypothetical UPF0054 protein JHP1087	Putative metalloprotease YPTB1111	Ortholog of S. aureus MRSA252 (BX571856) SAR1647 conserved hypothetical protein	conserved hypothetical protein	hypothetical metal-binding protein	Similar to Q8EHN9 Hypothetical UPF0054 protein SO117 from Shewanella oneidensis (153 aa). FATSA: opt: 433 Z-score: 547.4 E(): 1.3e-22 Smith-Waterman score: 433; 44.025identity in 159 aa overlap ORF ftt0616c cconserved hypothetical protein, UPF0054 family	Putative metalloprotease ybeY	conserved hypothetical protein	Protein of unknown function UPF0054	
HELPY01132	Flavodoxin	Flavodoxin	Flavodoxin 1	Flavodoxin-1	Putative flavodoxin	Flavodoxin	Flavodoxins	Residues 40 to 215 of 215 are 96 pct identical to residues 1 to 176 of a 176 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286399.1 flavodoxin 1	Flavodoxin 1	FldA protein	Flavodoxin 1	flavodoxin	Flavodoxin, IsiB	identified by match to protein family HMM PF00258; match to protein family HMM TIGR01752 flavodoxin	Flavodoxin 1	IPR001226: Flavodoxin; IPR008254: Flavodoxin/nitric oxide synthase flavodoxin 1	similar to Salmonella typhi CT18 flavodoxin 1 flavodoxin 1	Flavodoxin FldA	Flavodoxin	Flavodoxin 1	Flavodoxin	COG0716 flavodoxin	flavodoxin	Similar to: HI0191, FLAV_HAEIN flavodoxin	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 flavodoxin 1 FldA or B0684 or C0771 or Z0832 or ECS0715 SWALL:FLAV_ECOLI (SWALL:P23243) (175 aa) fasta scores: E(): 2.9e-20, 38.03% id in 163 aa, and to Campylobacter jejuni flavodoxin FldA or CJ1382c SWALL:Q9PMR8 (EMBL:AL139078) (163 aa) fasta scores: E(): 4.3e-24, 47.2% id in 161 aa flavodoxin 1	Flavodoxins FldA protein	Flavodoxin	Flavodoxin	Flavodoxin-1	
HELPY01133	Conserved hypothetical integral membrane protein	identified by match to protein family HMM PF00597 DedA family protein	Putative uncharacterized protein	Putative	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pm : putative membrane component putative DedA family protein	DedA family protein	putative alkaline phosphatase	DedA family; putative alkaline phosphatase-like protein	Integral membrane protein	alkaline phosphatase KEGG: sth:STH2141 alkaline phosphatase	conserved hypothetical integral membrane protein	integral membrane protein	DedA family; putative alkaline phosphatase-like protein COG586 Uncharacterized membrane-associated protein [Function unknown]	conserved hypothetical protein Conserved hypothetical integral membrane protein Function unclear	DedA family; putative alkaline phosphatase-like protein COG586 Uncharacterized membrane-associated protein [Function unknown]	DedA family protein	Hypothetical protein	DedA family; putative alkaline phosphatase-like protein COG586 Uncharacterized membrane-associated protein [Function unknown]	Putative uncharacterized protein	DedA family protein	Putative integral membrane protein	Conserved hypothetical integral membrane protein	YngC	Integral membrane protein	SNARE associated Golgi protein	Integral membrane protein	Integral membrane protein	DedA-related protein	Putative uncharacterized protein	
HELPY01134	Putative uncharacterized protein	Putative component of cation transport for cbb3-type oxidase	Cytochrome oxidase maturation protein cbb3-type	cation transport subunit for cbb3-type oxidase	conserved domain protein identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847	conserved hypothetical protein Probable Nitrogen fixation protein fixS Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved domain protein	Conserved domain protein	Cation transport subunit for cbb3-type oxidase	Cation transport subunit forcbb3-type oxidase	Cation transport subunit for cbb3-type oxidase	Putative cation transport subunit for cbb3-type oxidase	
HELPY01135	Thioredoxin reductase	CDS_ID OB1809 hypothetical protein	BH1623 protein	Thioredoxin reductase-like protein	identified by match to protein family HMM PF00070 pyridine nucleotide-disulphide oxidoreductase family protein	Biological Process: electron transport (GO:0006118), Molecular Function: disulfide oxidoreductase activity (GO:0015036) FAD-dependent pyridine nucleotide-disulphide oxidoreductase	thioredoxin reductase	Putative uncharacterized protein trxB_2	hypothetical protein, similar to thioredoxin reductase homolog	Putative THIOREDOXIN REDUCTASE	Ortholog of S. aureus MRSA252 (BX571856) SAR1488 putative pyridine nucleotide-disulphide oxidoreductase	hypothetical protein, similar to thioredoxin reductase homolog	thioredoxin reductase	Similar to Bacillus halodurans hypothetical protein BH1623 TR:Q9KCE8 (EMBL:AP001512) (322 aa) fasta scores: E(): 6.2e-75, 61.199% id in 317 aa, and to Bacillus subtilis hypothetical protein YpdA SW:YPDA_BACSU (P50736) (324 aa) fasta scores: E(): 7.2e-75, 63.804% id in 326 aa putative pyridine nucleotide-disulphide oxidoreductase	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	identified by match to protein family HMM PF00070; match to protein family HMM PF07992 pyridine nucleotide-disulfide oxidoreductase	similar to gi|57284620|gb|AAW36714.1| [Staphylococcus aureus subsp. aureus COL], percent identity 84 in 328 aa, BLASTP E(): e-164 putative thioredoxin reductase	pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF00070; match to protein family HMM PF07992	conserved hypothetical protein	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	thioredoxin reductase, putative	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	thioredoxin reductase	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	conserved hypothetical protein	FAD-dependent pyridine nucleotide-disulphide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: plt:Plut_1516 thioredoxin reductase, putative	oxidoreductase identified by match to protein family HMM PF00070; match to protein family HMM PF07992	Thioredoxin reductase family protein (P52214) Thioredoxin reductase (EC 1.8.1.9) (TRXR) (TR) High confidence in function and specificity	Thioredoxin-disulfide reductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein KEGG: rpd:RPD_1645 FAD-dependent pyridine nucleotide-disulphide oxidoreductase	
HELPY01136	Tetracycline resistance protein tetA(P), putative	Major facilitator superfamily permease	Complete genome; segment 6/17	multidrug-efflux transporter, putative	similar to multidrug-efflux transporter; Biological Process: electron transport (GO:0006118) putative electron transport protein YxlH	Putative	Possible MFS Superfamliy multidrug-efflux transporter	tetracycline resistance protein tetA(P)	Major facilitator family transporter	Permease, major facilitator superfamily	permease of the major facilitator superfamily	Hypothetical protein	Transport protein, putative	Transport protein, putative	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	multidrug-efflux transporter putative permease of the major facilitator superfamily,InterPro; Major facilitator superfamily hypothetical protein	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	Tetracycline resistance proteintet A	Multidrug-efflux transporter	Multidrug-efflux transporter	Major facilitator superfamily MFS_1	Putative uncharacterized protein pmrB	Major facilitator superfamily permease	Major facilitator superfamily MFS_1	Putative permease, MFS superfamily; putative membrane protein	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	
HELPY01137	Glucose-6-phosphate isomerase	glucose-6-phosphate isomerase A (phosphoglucose isomerase A)	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	similar to AE006982-9|AAK45220.1| percent identity: 62 in 539 aa putative glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase (gpi)	Residues 3 to 551 of 551 are 99 pct identical to residues 1 to 549 of a 549 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290659.1 glucosephosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	phosphoglucose isomerase B	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	conserved gene glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	glucose-6-phosphate isomerase	identified by match to protein family HMM PF00342 glucose-6-phosphate isomerase	
HELPY01138	Putative uncharacterized protein	outer membrane protein HofH	hof-family outer membrane protein putative outer membrane protein,no omp family protein hypothetical protein	Outer membrane protein HofH	Outer membrane protein	Outer membrane protein HofH	
HELPY01139	Carbon starvation protein A homolog	Putative carbon starvation protein	Carbon starvation protein A	Carbon starvation protein	Carbon starvation protein	Carbon starvation protein, predicted membrane protein	Putative carbon starvation protein A	Carbon starvation protein CstA	Probable carbon starvation a transmembrane protein	Carbon starvation protein	identified by similarity to SP:P15078; match to protein family HMM PF02554 carbon starvation protein A	CstA	Carbon starvation protein A homolog	Mb3090, cstA, len: 758 aa. Equivalent to Rv3063, len: 758 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 758 aa overlap). Probable cstA, integral membrane starvation-induced stress response protein, similar to other e.g. P15078|CSTA_ECOLI|B0598 from Escherichia coli strain K12 (701 aa), FASTA scores: opt: 2357, E(): 9.5e-137, (51.25% identity in 712 aa overlap); AAG54933|CSTA from Escherichia coli strain O157:H7 EDL933 (701 aa), FASTA scores: opt: 2356, E(): 1.1e-136, (51.1% identity in 712 aa overlap); etc.  Predicted to be membrane associated. Similarity suggests start at GTG at 16801 in Y22D7 but no RBS obvious so TBparse-predicted start at 16881 taken. BELONGS TO THE CSTA FAMILY. PROBABLE CARBON STARVATION PROTEIN A HOMOLOG CSTA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark carbon starvation protein A	Carbon starvation protein	Carbon starvation protein A homolog	Carbon starvation protein A	Carbon starvation protein A homolog	Putative carbon starvation protein A	Putative integral membrane protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type ph : phenotype starvation-induced protein involved in peptide utilization during carbon starvation	Carbon starvation protein CstA	carbon starvation protein A	carbon starvation protein A	identified by similarity to SP:P15078; match to protein family HMM PF02554 carbon starvation protein CstA	identified by similarity to SP:P15078; match to protein family HMM PF02554 carbon starvation protein CstA	Carbon starvation protein CstA	Carbon starvation protein CstA	
HELPY01140	Glutamine ABC transporter, permease protein	AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine	glutamine ABC transporter, permease protein	polar amino acid transport system permease protein glutamine ABC transporter, permease protein (glnP) Function unclear	ABC polar amino acid family transporter, innermembrane subunit	ABC-type amino acid transport system	Polar amino acid uptake family ABC transporter permease protein 1	Polar amino acid ABC transporter, inner membrane subunit	Polar amino acid ABC transporter, inner membrane subunit	polar amino acid ABC transporter, inner membrane subunit TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: pen:PSEEN5261 amino acid ABC transporter, permease protein	ABC-type amino acid transport system, permease component	Glutamine ABC transporter, permease protein	Glutamine ABC transporter, permease protein	Glutamine ABC transporter permease protein	
HELPY01141	Glutamine ABC transporter, permease protein	Putative uncharacterized protein	AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN	Putative ABC transporter membrane-spanning permease - glutamine transport	polar amino acid ABC uptake transporter membrane-spanning protein	amino acid ABC transporter, permease	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 glutamine/glutamate ABC transporter, permease protein	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine	Best Blastp Hit: pir||B64666 glutamine ABC transporter, permease protein - Helicobacter pylori (strain 26695) >gi|2314329|gb|AAD08216.1| (AE000623) glutamine ABC transporter, permease protein (glnP) [Helicobacter pylori 26695] COG0765 Amino acid ABC transporter permease putative ABC transporter, permease protein, amino acid	Citation: Palanichelvam, K. et al. (2000) Mol. Plant Microb Interaction, 13: 1081-1091. ABC amino acid transporter, inner membrane subunit	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine	glutamine ABC transporter, permease protein	hypothetical protein similarity to COG0765 ABC-type amino acid transport system, permease component(Evalue: 6E-53)	ABC-type amino acid transport system, permease component	polar amino acid transport system permease protein glutamine transport system permease protein Function unclear	amino acid ABC transporter, permease protein equivalent gene in S.pneumoniae TIGR4 = SP0710; equivalent gene in S.pneumoniae R6 = spr0623; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726	Amino acid ABC transporter, permease protein SP0710	Polar amino acid ABC transporter, inner membrane subunit	Amino acid ABC transporter, permease protein	Glutamine ABC transporter, permease protein	Putative ABC transporter, permease protein, amino acid	Glutamine ABC transporter, permease protein	ABC amino acid transporter, inner membrane subunit	ABC transporter membrane-spanning permease- glutamine transport	ABC transporter permease protein	Amino-acid ABC transporter integral membrane protein	Polar amino acid ABC transporter, inner membrane subunit	ABC-type amino acid transport system permease component	Glutamine ABC transporter permease protein	
HELPY01142	Glutamine ABC transporter, ATP-binding protein	ABC transporter-like	glutamine ABC transporter, ATP-binding protein	Amino acid ABC transporter, ATP-binding protein	hypothetical protein similarity to COG1126 ABC-type polar amino acid transport system, ATPase component(Evalue: 2E-86)	polar amino acid transport system ATP-binding protein glutamine transport system permease protein High confidence in function and specificity	GlnQ protein	ABC-type amino acid transport system, permease component	Amino acid ABC transporter, ATP-binding protein SP0709	Glutamine ABC transporter, ATP-binding protein	Glutamine ABC transporter, ATP-binding protein	Glutamine transport ATP-binding protein GlnQ	Amino-acid ABC transporter ATP-binding protein	ABC transporter related	Glutamine ABC transporter ATP-binding protein	
HELPY01143	Glutamine ABC transporter, periplasmic glutamine- binding protein	periplasmic substrate-binding protein of a TRAP-type permease that mediates sodium-dependent glutamate transport GtrC polar amino acid transport system substrate-binding proetin	identified by similarity to SP:Q52663 amino acid ABC transporter, periplasmic amino acid-binding protein	amino acid (glutamine) ABC transporter substrate binding protein	identified by similarity to GB:AAD26123.1; similarity to GB:CAA71822.1; match to protein family HMM PF00497 surface antigen, CjaA	Amino-acid ABC transporter periplasmic solute- binding protein	AMINO ACID ABC TRANSPORTER, BINDING PROTEIN	Putative ABC transporter substrate-binding protein - unknown substrate, truncation	ABC-type amino acid transport system, periplasmic component ArtI protein	polar amino acid ABC uptake transporter substrate binding protein	amino acid ABC transporter, periplasmic solute-binding protein	extracellular solute-binding protein, family 3	extracellular solute-binding protein, family 3	extracellular solute-binding protein, family 3	putative solute-binding component of ABC transporter similarity:fasta; with=UniProt:Q98D21_RHILO (EMBL:BA000012); Rhizobium loti (Mesorhizobium loti).; Amino acid ABC transporter, periplasmic binding protein.  Amino acid ABC transporter, periplasmic binding protein.; length=269; id 78.400; 250 aa overlap; query 16-265; subject 20-269	Extracellular solute-binding protein, family 3 precursor	extracellular solute-binding protein, family 3	extracellular solute-binding protein, family 3	glutamine ABC transporter, periplasmic glutamine-binding protein	Amino acid ABC transporter, substrate binding protein	hypothetical protein similarity to COG0834 ABC-type amino acid transport system, periplasmic component(Evalue: 3E-84)	extracellular solute-binding protein, family 3	extracellular solute-binding protein, family 3	extracellular solute-binding protein, family 3 PFAM: extracellular solute-binding protein, family 3 KEGG: fal:FRAAL5714 putative glutamate binding protein of ABC transporter system	ABC-type amino acid transport/signal transduction systems, periplasmic component/domain	extracellular solute-binding protein, family 3 PFAM: extracellular solute-binding protein, family 3 KEGG: atc:AGR_L_407 probable binding protein component of ABC transporter	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	probable solute-binding protein for glutamate_aspartate ABC transporter system COG family: ABC-type amino acid transport system_periplasmic component Orthologue of BL0077 PFAM_ID: SBP_bac_3	extracellular solute-binding protein, family 3 SMART: extracellular solute-binding protein, family 3 KEGG: bja:blr4446 ABC transporter amino acid-binding protein	
HELPY01144	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01145	Putative glucose/galactose transporter	Glucose/galactose transporter	Glucose/galactose transporter	Multidrug resistance transporter protein	InterProMatches:IPR007114; Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: integral to membrane (GO:0016021) glucose/mannose:H+ symporter	conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glucose-galactose transporter	similar to BRA0190, identified by similarity to BMEII1053; glucose/galactose transporter glucose/galactose transporter	Glucose-galactose transporter	Putative glucose/galactose transporter	Putative transmembrane hexose transporter	Similar to Helicobacter pylori J99 putative glucose/galactose transporter GluP or JHP1101 SWALL:GLUP_HELPJ (SWALL:Q9ZK41) (407 aa) fasta scores: E(): 2.9e-27, 30.69% id in 417 aa, and to Escherichia coli L-fucose permease FucP or B2801 SWALL:FUCP_ECOLI (SWALL:P11551) (438 aa) fasta scores: E(): 5.6e-07, 24.02% id in 408 aa putative transport-related, membrane protein	glucose/galactose transporter	fosmidomycin resistance protein	Best Blastp Hit: pir||F81187 glucose/galactose transporter NMB0535 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225760|gb|AAF40964.1| (AE002409) glucose/galactose transporter [Neisseria meningitidis MC58] COG0738 Fucose permease putative sugar transporter	Bacterial glucose/galactose transporter	putative glucose/galactose transporter	glucose/galactose transporter	glucose/galactose transporter	transporter, putative probable CC1133; identified by match to protein family HMM PF07690	glucose-galactose transporter identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	glucose/galactose transporter	Glucose/galactose transporter	fosmidomycin resistance protein	Major Facilitator Superfamily protein identified by match to protein family HMM PF07690	glucose/galactose transporter TIGRFAM: glucose/galactose transporter PFAM: major facilitator superfamily MFS_1 KEGG: xoo:XOO2070 glucose-galactose transporter	glucose/galactose transporter High confidence in function and specificity	glucose/galactose transporter TIGRFAM: glucose/galactose transporter PFAM: major facilitator superfamily MFS_1 KEGG: sfr:Sfri_1789 glucose/galactose transporter	glucose/galactose transporter TIGRFAM: glucose/galactose transporter PFAM: major facilitator superfamily MFS_1 KEGG: bmb:BruAb2_0185 glucose/galactose transporter	
HELPY01146	Conserved hypothetical integral membrane protein	Putative uncharacterized protein MYPU_2810	Xanthine/uracil permease family protein	Permease	Xanthine/uracil permease	Putative xanthine/uracil permease	SC6C5.09, probable permease, len: 485aa; similar to many eg. SW:Y326_METJA hypothetical protein from Methanococcus jannaschii (436 aa) fasta scores; opt: 517, z-score: 1019.3, E(): 0, (37.2% identity in 454 aa overlap). Contains Pfam match to entry PF00860 xan_ur_permease, Xanthine /uracil permeases family, score 43.50, E-value 4.9e-09. putative permease SC6C5.09	Permeases	xanthine/uracilpermease	Transport protein	identified by match to protein family HMM PF00860 xanthine/uracil permease family protein	COG2252 Permeases putative xanthine-uracil permeases family protein	similar to BRA0661, uracil-xanthine permease, hypothetical uracil-xanthine permease, hypothetical	Xanthine/uracil permease	Putative	Hypothetical protein	not found in Sulfolobus solfataricus and Sulfolobus tokodaii, but in other Archaea and Bacteria conserved protein	identified by match to protein family HMM PF00860 xanthine/uracil permease family protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative transporter	guanine-hypoxanthine permease	Transporter, putative	go_function: nucleoside transporter activity [goid 0005337]; go_process: nucleoside transport [goid 0015858] nucleoside transporter, putative	identified by match to protein family HMM PF00860 xanthine/uracil permease family protein	Xanthine/uracilpermease	identified by match to protein family HMM PF00860 xanthine/uracil permease family protein	identified by match to protein family HMM PF00860 xanthine/uracil permease family protein	Xanthine/uracil/vitamin C permease	putative xanthine/uracil permease	predicted transporter	
HELPY01148	Outer membrane protein	outer membrane protein HopQ	Outer membrane protein	Outer membrane protein	Outer membrane protein HopQ	

HELPY01149	Purine nucleoside phosphorylase deoD-type	Putative purine nucleoside phosphorylase	Purine nucleoside phosphorylase	Purine-nucleoside phosphorylase	Putative purine nucleoside phosphorylase	Purine nucleoside phosphorylase II	Purine nucleoside phosphorylase deoD-type	CDS_ID OB2345 purine nucleoside phosphorylase	PURINE NUCLEOSIDE PHOSPHORYLASE	purine nucleoside phosphorylase	Purine nucleoside phosphorylase	Purine nucleoside phosphorylase deoD-type	Purine-nucleoside phosphorylase	Purine nucleoside phosphorylase	Purine nucleoside phosphorylase deoD-type	Purine nucleoside phosphorylase deoD-type	Residues 20 to 258 of 258 are 99 pct identical to residues 1 to 239 of a 239 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290998.1 purine-nucleoside phosphorylase	Purine nucleoside phosphorylase deoD-type	Purine nucleoside phosphorylase	DeoD	purine nucleoside phosphorylase	Purine nucleoside phosphorylase deoD-type	identified by match to protein family HMM PF01048; match to protein family HMM TIGR00107 purine nucleoside phosphorylase	Purine-nucleoside phosphorylase	Purine nucleoside phosphorylase	identified by similarity to SP:O34925; match to protein family HMM PF01048; match to protein family HMM TIGR00107 purine nucleoside phosphorylase	Purine nucleoside phosphorylase deoD-type	purine nucleoside phosphorylase (family 1)	Purine nucleoside phosphorylase	
HELPY01150	Phosphopentomutase	Phosphopentomutase	Phosphopentomutase	Phosphopentomutase	Phosphopentomutase	Phosphopentomutase	CDS_ID OB1846 phosphopentomutase	Phosphopentomutase	phosphopentomutase	Phosphopentomutase	Phosphopentomutase	Phosphopentomutase	Phosphopentomutase	Phosphopentomutase	Phosphopentomutase	Residues 1 to 407 of 407 are 100 pct identical to residues 1 to 407 of a 407 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290997.1 phosphopentomutase	Phosphopentomutase	Phosphopentomutase	phosphopentomutase	Phosphopentomutase	Phosphopentomutase	conserved gene phosphopentomutase	Phosphopentomutase	identified by similarity to SP:P46353; match to protein family HMM PF01676; match to protein family HMM TIGR01696 phosphopentomutase	Phosphopentomutase	identified by match to protein family HMM PF01676; match to protein family HMM TIGR01696 phosphopentomutase	Phosphopentomutase	phosphopentomutase	Phosphopentomutase	
HELPY01151	Pyrimidine nucleoside transport protein	NupC family protein	Nucleoside transporter	Nucleoside permease	Putative Na+ dependent nucleoside transporter- family protein	Similar to hypothetical transport protein	Nucleoside permease nupC	Probable sodium-dependent nucleoside transporter	nucleoside transporter	Putative uncharacterized protein gbs2025	Putative nucleoside transporter	identified by match to PFAM protein family HMM PF01773 Na+ dependent nucleoside transporter	Putative Na+ dependent nucleoside transporter- family protein	Nucleoside permease	best blastp match gb|AAK34582.1| (AE006612) putative nucleoside transporter [Streptococcus pyogenes M1 GAS] putative nucleoside transporter	COG1972 nucleoside permease	Nucleoside permease NupC	Similar to: HI0519, YEIM_HAEIN predicted nucleoside permease	Nucleoside permease NupC protein	Na(+)/nucleoside cotransporter	NupC-like protein Nucleoside permease	putative nucleoside transporter	Na+ dependent nucleoside transporter	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 concentrative nucleoside transporter (CNT) family protein	nucleoside permease	Permease protein, NupC family of nucleoside transporters	Evidence 2b : Function of strongly homologous gene; Product type t : transporter putative Na+ dependent nucleoside transporter	Na+ dependent nucleoside transporter-like protein	
HELPY01152	Multidrug-efflux transporter	Similar to probable transport protein YajR of Escherichia coli	putative transport protein, MFS family hypothetical protein	conserved gene major facilitator family transporter	Similar to major facilitator superfamily (MFS)transporter hypothetical protein	identified by match to protein family HMM PF00083 drug transporter, putative	hypothetical protein, similar to multidrug resistance protein-related protein	Putative transporter	Ortholog of S. aureus MRSA252 (BX571856) SAR0986 putative membrane protein	Similar to rp||bcr2 rp||bcr1; Ortholog to ERGA_CDS_07760 Bicyclomycin resistance protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative transport protein (MFS superfamily)	putative MFS family transporter	hypothetical protein, similar to transporter proteins	Similar to rp||bcr2 rp||bcr1; Ortholog to ERWE_CDS_07850 Bicyclomycin resistance protein	identified by match to protein family HMM PF00083; match to protein family HMM PF07690 major facilitator family transporter	Major facilitator superfamily MFS_1	General substrate transporter:Major facilitator superfamily	Similar to Bacillus halodurans hypothetical protein BH2311 TR:Q9KAH6 (EMBL:AP001515) (391 aa) fasta scores: E(): 1.4e-08, 25.000% id in 400 aa, and to Escherichia coli hypothetical protein YceE SW:YCEE_ECOLI (P25744) (408 aa) fasta scores: E(): 1.1e-07, 24.422% id in 389 aa putative membrane protein	identified by match to protein family HMM PF07690 membrane protein, putative	Putative MFS family transporter	putative membrane protein identified by match to protein family HMM PF07690	Major facilitator superfamily MFS_1 precursor	major facilitator family transporter identified by match to protein family HMM PF00083; match to protein family HMM PF07690	Major facilitator superfamily MFS_1	multidrug-efflux transporter	DNA polymerase III, alpha subunit	putative membrane protein identified by match to protein family HMM PF07690	Major facilitator superfamily MFS_1	
HELPY01153	Putative uncharacterized protein	Putative uncharacterized protein MYPE5070	ATPases of the PP superfamily	tRNA 2-thiocytidine biosynthesis protein ttcA	tRNA 2-thiocytidine biosynthesis protein ttcA	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	tRNA 2-thiocytidine biosynthesis protein ttcA	Predicted ATPase of the PP-loop superfamily implicated in cell cycle control	tRNA 2-thiocytidine biosynthesis protein ttcA	hypothetical protein	Residues 1 to 311 of 311 are 98 pct identical to residues 1 to 311 of a 311 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287839.1 orf, conserved hypothetical protein	PP-Loop Superfamily ATPase	tRNA 2-thiocytidine biosynthesis protein ttcA	tRNA 2-thiocytidine biosynthesis protein ttcA	ATPase, PP-loop superfamily	tRNA 2-thiocytidine biosynthesis protein ttcA	tRNA 2-thiocytidine biosynthesis protein ttcA	similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	similar to conserved hypothetical protein hypothetical protein	tRNA 2-thiocytidine biosynthesis protein ttcA	tRNA 2-thiocytidine biosynthesis protein ttcA	identified by match to protein family HMM PF01171 PP-loop family protein	Putative uncharacterized protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	putative ATPase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	
HELPY01154	NA+/H+ antiporter	Na(+)/H(+) antiporter homolog	SCE39.29, possible integral membrane efflux protein, len: 404aa; similar to many eg. SW:KEFB_ECOLI glutathione-regulated potassium-efflux system protein, KefB (601 aa) fasta scores; opt: 250, z-score: 293.4, E(): 5e-09, (27.1% identity in 414 aa overlap). Contains several potential membrane spanning hydrophobic regions. putative integral membrane efflux protein	Na_antiporter homologue	Similar to glutathione-regulated potassium-efflux system protein KefC (K(+)/H(+)antiporter) hypothetical protein	conserved gene glutathione-regulated potassium efflux system	Similar to glutathione-regulated potassium-efflux system protein KefC (K(+)/H(+)antiporter) hypothetical protein	similar to Na+/H+ antiporter; Biological Process: potassium ion transport (GO:0006813), Biological Process: potassium ion transport (GO:0006813), Molecular Function: cation transporter activity (GO:0008324) cation transporter YjbQ	Na+-H+ antiporter	Putative Na(+)/H(+) antiporter	Putative uncharacterized protein kefB_1	Na+/H+ antiporter homologue	Putative NA+/H+ ANTIPORTER	Ortholog of S. aureus MRSA252 (BX571856) SAR0977 putative cation transport protein	Na+/H+ antiporter homologue	Na+/H+ antiporter	sodium/hydrogen exchanger family protein	N-terminal region is similar to Enterococcus hirae Na+/H+ antiporter protein NapA SW:NAPA_ENTHR (P26235) (383 aa) fasta scores: E(): 3.8e-10, 26.368% id in 402 aa. Full length CDS is similar to and to Bacillus subtilis hypothetical protein YjbQ TR:O31615 (EMBL:Z99110) (614 aa) fasta scores: E(): 2.9e-108, 52.545% id in 609 aa putative cation transport protein	putative sodium exchanger	Na+/H+ antiporter	transporter, monovalent cation:proton antiporter-2 (CPA2) family protein identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254	predicted potassium transport system, membrane component COG0475	Na+/H+ antiporter protein	Sodium/hydrogen exchanger	sodium/hydrogen exchanger	Na+/H+ antiporter	Na+/H+ antiporter, putative identified by similarity to SP:P26235; match to protein family HMM PF00999; match to protein family HMM PF02080	transporter, monovalent cation:proton antiporter-2 (CPA2) family identified by match to protein family HMM PF00999; match to protein family HMM PF02080	conserved hypothetical protein	
HELPY01155	Conserved hypothetical integral membrane protein	Na+-driven multidrug efflux pump	Conserved hypothetical membrane protein	Putative	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 MATE efflux family protein	Na+ driven multidrug efflux pump	Putative drug:Na(+) antiporter (drug efflux pump)	Na+ driven multidrug efflux pump COG0534 [V] Na+-driven multidrug efflux pump	conserved hypothetical integral membrane protein	MATE efflux family protein identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797	MATE efflux family protein identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797	MATE efflux family protein	conserved hypothetical protein hypothetical protein	Complete genome	Na+ driven multidrug efflux pump	Putative transmembrane cation efflux protein	MATE efflux family protein	hypothetical protein	Multi antimicrobial extrusion protein MatE	MATE efflux family protein	Putative uncharacterized protein	Multi antimicrobial extrusion protein MatE	Putative uncharacterized protein	Multi antimicrobial extrusion protein MatE	Multi antimicrobial extrusion protein MatE	Putative uncharacterized protein	Putative MATE efflux family protein	Mate efflux family protein	Na+ driven multidrug efflux pump	
HELPY01156	Probable sugar efflux transporter	Residues 1 to 362 of 362 are 99 pct identical to residues 1 to 362 of a 396 aa protein from Escherichia coli K12 ref: NP_416045.1 putative resistance - regulatory protein	IPR007114: Major facilitator superfamily MFS family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein, contributes to control of arabinose regulon	similar to Salmonella typhi CT18 putative membrane transport protein putative membrane transport protein	Probable sugar efflux transporter	Similar to: HI0135, SOTB_HAEIN probable sugar efflux transporter	Arabinose efflux permease AraJ protein	Probable sugar efflux transporter	Probable sugar efflux transporter	identified by match to protein family HMM PF07690 major facilitator family transporter	identified by match to protein family HMM PF07690 major facilitator family transporter	General substrate transporter:Major facilitator superfamily MFS_1	Code: G; COG: COG2814 putative resistance/regulatory protein	Code: G; COG: COG2814 putative resistance/regulatory protein	putative transport protein	major facilitator superfamily MFS_1	Major facilitator superfamily (MFS_1) transporter	Probable sugar efflux transporter	sugar efflux transporter protein	hypothetical protein similarity to COG0477 Permeases of the major facilitator superfamily	Probable sugar efflux transporter	major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1 KEGG: bur:Bcep18194_C7038 major facilitator superfamily (MFS_1) transporter	major facilitator superfamily MFS_1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1 KEGG: aba:Acid345_3976 major facilitator superfamily (MFS) transporter	putative membrane transport protein Region start changed from 336580 to 336529 (51 bases)	Transporter, major facilitator family	Major facilitator family transporter	putative MFS transporter	sugar exporter, MFS family Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter	putative resistance / regulatory protein Code: G; COG: COG2814	
HELPY01157	Carbonic anhydrase	A-type carbonic anhydrase	Carbonic anhydrase	Carbonic anhydrase	Carbonate dehydratase	carbonate dehydratase	carbonic anhydrase	Carbonic anhydrase	CARBONIC ANHYDRASE	A-type carbonic anhydrase	Carbonic anhydrase Cah protein	carbonate dehydratase	Carbonate dehydratase	Best Blastp Hit: sp|Q50940|CAH_NEIGO carbonic anhydrase precursor (carbonate dehydratase) >gi|1841441|emb|CAA72038.1| (Y11152) carbonic anhydrase [Neisseria gonorrhoeae]; Cah carbonic anhydrase	Twin-arginine translocation pathway signal	carbonic anhydrase	Carbonate dehydratase	Carbonate dehydratase	Carbonate dehydratase	alpha-carbonic anhydrase	Carbonate dehydratase	Carbonic anhydrase	(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase)(O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate dehydratase) High confidence in function and specificity	carbonic anhydrase identified by match to protein family HMM PF00194	Carbonate dehydratase PFAM: carbonic anhydrase KEGG: rpc:RPC_0758 carbonate dehydratase	Carbonic anhydrase	Carbonic anhydrase	periplasmic alpha-carbonic anhydrase	Carbonate dehydratase PFAM: carbonic anhydrase KEGG: hch:HCH_00805 carbonic anhydrase	
HELPY01158	Putative uncharacterized protein	

HELPY01160	Aspartate-semialdehyde dehydrogenase	aspartate-semialdehyde dehydrogenase	ASPARTATE-SEMIALDEHYDE DEHYDROGENASE	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Putative PTS system enzyme II A component	CDS_ID OB1610 aspartate-semialdehyde dehydrogenase	Putative aspartate-semialdehyde dehydrogenase	aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Residues 1 to 337 of 337 are 99 pct identical to residues 1 to 337 of a 337 aa protein from Escherichia coli K12 ref: NP_416822.1 putative PTS system enzyme II A component	Putative aspartate-semialdehyde dehydrogenase	aspartate-semialdehyde dehydrogenase	Aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	USG-1 protein	Aspartate-semialdehyde dehydrogenase	conserved gene aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 aspartate-semialdehyde dehydrogenase	
HELPY01161	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Probable histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase protein	histidyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark histidyl-tRNA synthetase	Histidyl-tRNA synthetase	similar to BRA0187, histidyl-tRNA synthetase HisS, histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	, predicted protein, len = 474 aa, probably histidyl-tRNA synthetase; predicted pI = 5.6470; good similarity to many putative histidyl-tRNA synthetases, primarily in bacteria; contains a tRNA synthetase class II core domain (G, H, P, S and T) histidyl-tRNA synthetase, putative	Similar to Porphyromonas gingivalis W83 histidyl-tRNA synthetase HisS or PG2062 SWALL:AAQ67023 (EMBL:AE017179) (454 aa) fasta scores: E(): 1.4e-113, 66.59% id in 443 aa, and to Clostridium tetani histidyl-tRNA synthetase HisS or CTC01958 SWALL:SYH_CLOTE (SWALL:Q892X7) (439 aa) fasta scores: E(): 7.5e-42, 37.16% id in 452 aa putative histidyl-tRNA synthetase	Similar to Xanthomonas axonopodis histidyl-tRNA synthetase HisS or xac1826 SWALL:Q8PLH2 (EMBL:AE011816) (478 aa) fasta scores: E(): 6e-24, 28.8% id in 427 aa, and to Oryza sativa histidyl-trna synthetase SWALL:SYH_ORYSA (SWALL:P93422) (494 aa) fasta scores: E(): 4.9e-19, 28.29% id in 410 aa histidyl-tRNA synthetase	go_component: cytoplasm [goid 0005737]; go_component: mitochondrion [goid 0005739]; go_function: histidine-tRNA ligase activity [goid 0004821]; go_process: histidyl-tRNA aminoacylation [goid 0006427] histidyl-tRNA synthetase, mitochondrial precursor	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	
HELPY01162	ADP-heptose-lps heptosyltransferase II	ADP-heptose-LPS heptosyltransferase II	ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis	Putative ADP-heptose--lipopolysaccharide heptosyltransferase II	ADP-heptose-LPS heptosyltransferase	ADP-heptose--LPS heptosyltransferase II	ADP-heptose--LPS heptosyltransferase II WaaF	Residues 1 to 348 of 348 are 99 pct identical to residues 1 to 348 of a 348 aa protein from Escherichia coli K12 ref: NP_418077.1 ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis	ADP-heptose--LPS heptosyltransferase II	Probable adp-heptose--lipopolysaccharide heptosyltransferase II protein	ADP-heptose--LPS heptosyltransferase II	ADP-heptose--LPS heptosyltransferase II	identified by similarity to OMNI:NTL01HP01108; match to protein family HMM PF01075 ADP-heptose--LPS heptosyltransferase II	ADP-heptose; lipopolysaccharide heptosyltransferase II	IPR002201: Glycosyl transferase, family 9 ADP-heptose; LPS heptosyltransferase 1	similar to Salmonella typhi Ty2 ADP-heptose-LPS heptosyltransferase II ADP-heptose-LPS heptosyltransferase II	ADP-heptose:LPS heptosyltransferase	ADP-HEPTOSE--LPS HEPTOSYLTRANSFERASE II	ADP-heptose--LPS heptosyltransferase II	ADP-heptose:LPS heptosyltransferase II	ADP-heptose--LPS heptosyltransferase II	Similar to: HI1105, RFAF_HAEIN ADP-heptose--lipooligosaccharide heptosyltransferase II	ADP-heptoseLPS heptosyltransferase RfaF protein	Heptosyltransferase II	ADP-heptose--LPS heptosyltransferase 2	ADP-heptose-LPS heptosyltransferase II	Lipopolysaccharide heptosyltransferase	ADP-heptose--lipooligosaccharide heptosyltransferase II	ADP-heptose:LPS heptosyltransferase	
HELPY01163	Secreted protein involved in flagellar motility	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01164	Aldo-keto reductase, putative	aldo/keto reductase	Putative aldo/keto reductase	Aldo-keto reductase	Putative aldo/keto reductase	Putative oxidoreductase, aryl-alcohol dehydrogenase-like	aldo/keto reductase PFAM: aldo/keto reductase: (1.2e-59) KEGG: bja:bll4597 aldo-keto reductase, ev=1e-113, 65% identity	aldo/keto reductase	Putative aldo/keto reductase	Putative aldo/keto reductase	Oxidoreductase, aldo/keto reductase family	Putative aldo/keto reductase	aldo/keto reductase	aldo/keto reductase PFAM: aldo/keto reductase KEGG: bur:Bcep18194_B2855 aldo/keto reductase	Aldo/keto reductase	Aldo/keto reductase	aldo/keto reductase PFAM: aldo/keto reductase KEGG: gsu:GSU3126 oxidoreductase, aldo/keto reductase family	Aldo/keto reductase	Oxydo-reductase, aldo/keto reductase family	Aldo/keto reductase	aldo/keto reductase PFAM: aldo/keto reductase KEGG: ecc:c0413 putative aldo/keto reductase	Oxydo-reductase, aldo/keto reductase family	putative aldo/keto reductase	Aldo/keto reductase	Putative dehydrogenase	Aldo/keto reductase	Oxidoreductase, aldo/keto reductase family	Oxidoreductase, aldo/keto reductase family	Aldo/keto reductase	
HELPY01166	Elongation factor G	translation elongation factor EF-G	translation elongation factor G (EF-G)	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G 1	Elongation factor G	Elongation factor G	CDS_ID OB0116 translation elongation factor EF-G	Elongation factor G	similar to AE006965-7|AAK44938.1| percent identity: 73 in 704 aa putative translation elongation factor EF-G	Elongation factor G	unknown protein	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	SCD840A.07, fusA, elongation factor G, len: 708 aa; similar to SW:EFG_ECOLI (EMBL:X00415) Escherichia coli elongation factor G (EF-G) FusA, 703 aa; fasta scores: opt: 2711 z-score: 2957.5 E(): 0; 59.9% identity in 708 aa overlap and to SW:EFG2_STRCO (EMBL:AL031013) Streptomyces coelicolor elongation factor G FusB, SC8A6.10, 686 aa; fasta scores: opt: 1279 z-score: 1330.4 E(): 0; 49.1% identity in 697 aa overlap. Contains Pfam match to entry PF00009 GTP_EFTU, Elongation factor Tu family and to entry PF00679 EFG_C, Elongation factor G C-terminus and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00301 GTP-binding elongation factors signature elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	
HELPY01167	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7 (BS7)	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	CDS_ID OB0115 30S ribosomal protein S7	30S ribosomal protein S7	similar to S79283-2|AAB35202.2| percent identity: 79 in 154 aa putative 30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	
HELPY01168	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	CDS_ID OB0114 30S ribosomal protein S12	30S ribosomal protein S12	similar to X80124-1|CAA56425.1| percent identity: 89 in 121 aa putative 30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	
HELPY01169	Bifunctional DNA-directed RNA polymerase subunit beta-beta'	Bifunctional DNA-directed RNA polymerase subunit beta-beta'	Bifunctional DNA-directed RNA polymerase, beta and beta' chain	DNA-directed RNA polymerase, beta subunit	DNA-directed RNA polymerase beta chain High confidence in function and specificity	DNA-directed RNA polymerase subunit beta/beta'	DNA-directed RNA polymerase, beta/beta' subunits	DNA-directed RNA polymerase, beta subunit	DNA-directed RNA polymerase, beta subunit	DNA-directed RNA polymerase beta subunit	
HELPY01170	50S ribosomal protein L7/L12	50S ribosomal protein L12	50S ribosomal protein L7/L12 (BL13)	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	ribosomal protein L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	CDS_ID OB0110 50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	similar to D16310-1|BAA03817.1| percent identity: 74 in 128 aa putative 50S ribosomal protein L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	
HELPY01171	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	CDS_ID OB0109 50S ribosomal protein L10	50S ribosomal protein L10	similar to AL160431-23|CAB77426.1| percent identity: 52 in 170 aa putative 50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	SCD82.23, rplJ, 50S ribosomal protein L10, len: 176 aa; identical to previously sequenced SW:RL10_STRCO (EMBL:L24552) Streptomyces coelicolor 50S ribosomal protein L10 RplJ. Contains Pfam match to entry PF00466 Ribosomal_L10, Ribosomal protein L10 and match to Prosite entry PS01109 Ribosomal protein L10 signature 50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	
HELPY01172	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	CDS_ID OB0108 50S ribosomal protein L1	50S ribosomal protein L1	similar to AJ300822-4|CAC38385.1| percent identity: 90 in 236 aa putative 50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	
HELPY01173	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11 (BL11)	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	CDS_ID OB0107 50S ribosomal protein L11	50S ribosomal protein L11	similar to AB005916-1|BAA31983.1| percent identity: 80 in 144 aa putative 50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11-1	50S ribosomal protein L11	50S ribosomal protein L11	
HELPY01174	Transcription antitermination protein nusG	transcription antitermination protein	transcription antitermination factor	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein NusG	TRANSCRIPTION ANTITERMINATION PROTEIN NUSG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	CDS_ID OB0106 transcriptional antiterminator	TRANSCRIPTION ANTITERMINATION PROTEIN	Transcription antitermination protein nusG	transcription antitermination protein	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	

HELPY01175	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33 1	50S ribosomal protein L33	SCD82.06, rpmG3, 50S ribosomal protein L33, len: 54 aa; highly similar to SW:R331_BACSU (EMBL:D84432) Bacillus subtilis 50S ribosomal protein L33 type 1, RpmG1, 49 aa; fasta scores: opt: 235 z-score: 376.8 E(): 1.4e-13; 65.3% identity in 49 aa overlap. Contains Pfam match to entry PF00471 Ribosomal_L33, Ribosomal protein L33 50S ribosomal protein L33	50S ribosomal protein L33	50s ribosomal protein L33	50S ribosomal protein L33	identified by similarity to SP:Q06798; match to protein family HMM PF00471; match to protein family HMM TIGR01023 ribosomal protein L33	50S ribosomal protein L33 2	Mb0653, rpmG2, len: 55 aa. Equivalent to Rv0634B, len: 55 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 55 aa overlap). Probable rpmG2, 50S ribosomal protein L33. Note that Mycobacterium tuberculosis has a second rpmG gene: P96925|R33H_MYCTU|Rv2057c|MTCY63A.03|rpmG1 PUTATIVE 50S RIBOSOMAL PROTEIN L33 (55 aa), FASTA scores: opt: 391, E(): 2.9e-25, (100.0% identity in 55 aa overlap). BELONGS TO THE L33P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L33 RPMG2	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023 ribosomal protein L33	identified by sequence similarity; putative; ORF located using Blastx; COG0267 50S ribosomal protein L33	identified by sequence similarity; putative; ORF located using Blastx; COG0267 50S ribosomal protein L33	identified by similarity to SP:Q06798; match to protein family HMM PF00471; match to protein family HMM TIGR01023 ribosomal protein L33	50S ribosomal protein L33 identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023	50S ribosomal protein L33	ribosomal protein L33	50S ribosomal protein L33	LSU ribosomal protein L33P COG0267 [J] Ribosomal protein L33	ribosomal protein L33	ribosomal protein L33	ribosomal protein L33 identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023	
HELPY01176	Elongation factor Tu	protein synthesis elongation factor Tu	translation elongation factor Tu (EF-Tu)	Elongation factor Tu	Elongation factor Tu	Translation elongation factor Tu	elongation factor EF-Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	CDS_ID OB0117 elongation factor EF-Tu	Elongation factor Tu	Elongation factor Tu	elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	
HELPY01177	Multidrug resistance protein	Putative salivaricin A modification enzyme	Transport ATP-binding protein CydD	Putative cytoplasmic membrane export protein	ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein, HlyB family	Phospholipid-lipopolysaccharide ABC transporter	ABC-type transport system,membrane ATPase component	ABC transporter, ATP-binding protein	ABC transporter, fused permease and ATPase domains	ATP-binding protein of ABC transporter	identified by similarity to OMNI:NTL01CJ01074; match to protein family HMM PF00005; match to protein family HMM PF00664 ABC transporter, ATP-binding/permease protein	Putative uncharacterized protein gbs1740	Abc transporter, ATP-binding protein	ABC transporter ATP-binding/membrane-spanning - hemolysin secretion protein	, predicted protein, len = 641 aa, conserved hypothetical; predicted pI = 9.3348; good similarity to Q8T2V4, tcc1i14-2.11 in Trypanosoma cruzi; contains an ABC transporter pfam domain in the C-terminus ABC transporter, putative	Similar to Q8DMA7 ATP-binding protein of ABC transporter from Synechococcus elongatus (Thermosynechococcus elongatus) (610 aa). FASTA: opt: 1084 Z-score: 1105.1 E(): 1.2e-53 Smith-Waterman score: 1084; 35.159 identity in 566 aa overlap. ORF ftt0793 ABC transporter, ATP-binding and membrane protein	ABC-type multidrug transport system, ATPase and permease components	identified by match to protein family HMM PF00005; match to protein family HMM PF00664 ABC transporter, ATP-binding protein	conserved hypothetical protein	ABC transporter related	Lantibiotic processing peptidase / Lantibiotic transport permease protein / Lantibiotic transport ATP-binding protein	ABC-type multidrug transport system, ATPase and permease components COG1132	ATPase	ABC-transporter, ATP-binding domain	ABC transporter related	Lipid A export ATP-binding/permease protein MsbA	ABC transporter, ATP-binding and membrane protein Similar to Q8DMA7 ATP-binding protein of ABC transporter from Synechococcus elongatus (Thermosynechococcus elongatus) (610 aa). FASTA: opt: 1084 Z-score: 1105.1 E(): 1.2e-53 Smith-Waterman score: 1084; 35.159 identity in 566 aa overlap. ORF ftt0793	ABC-type transporter ATP-binding and permease co mponent	
HELPY01178	Putative uncharacterized protein	Putative	Haloacid dehalogenase-like hydrolase	HAD-superfamily hydrolase, subfamily IA, variant 1	hypothetical protein	Haloacid dehalogenase-like hydrolase	Haloacid dehalogenase-like hydrolase	hydrolase, haloacid dehalogenase-like family	conserved hypothetical protein (Q8DCT7) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGP)(Q8DCT7) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGP) conserved hypothetical protein	Haloacid dehalogenase domain protein hydrolase PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: neu:NE1690 haloacid dehalogenase/epoxide hydrolase family	Haloacid dehalogenase domain protein hydrolase	HAD-superfamily hydrolase, subfamily IA, variant 1	Putative uncharacterized protein	HAD-superfamily hydrolase, subfamily IA, variant 1	Putative uncharacterized protein	Putative uncharacterized protein	Haloacid dehalogenase domain protein hydrolase	Putative uncharacterized protein	Haloacid dehalogenase domain protein hydrolase	Putative haloacid dehalogenase	Haloacid dehalogenase domain protein hydrolase	
HELPY01179	Ulcer associated adenine specific DNA methyltransferase	Modification methylase	identified by similarity to SP:P24582; match to protein family HMM PF02086 D12 class N6 adenine-specific DNA methyltransferase	Putative uncharacterized protein	TYPE II DNA MODIFICATION ENZYME	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative DNA modification methylase (Adenine-specific methyltransferase)	Best Blastp Hit: gb|AAC45839.1| (AF001598) N6-methyladenine methyltransferase [Neisseria gonorrhoeae]; DamH N6-methyladenine methyltransferase	Site-specific DNA-methyltransferase	type II adenine specific DNA methyltransferase	DNA modification methylase identified by match to protein family HMM PF02086	adenine-specific methyltransferase (P24582) Modification methylase NlaIII (EC 2.1.1.72) (CATG-specific methyltransferase HpyIM) (M.HpyI) High confidence in function and specificity	D12 class N6 adenine-specific DNA methyltransferase identified by match to protein family HMM PF02086	Putative DNA modification methylase	D12 class N6 adenine-specific DNA methyltransferase	DNA modification methylase	Site-specific DNA-methyltransferase	DNA modification methylase	Putative restriction-modification system methyltransferase	D12 class N6 adenine-specific DNA methyltransferase	Site-specific DNA-methyltransferase (adenine-specific) PFAM: D12 class N6 adenine-specific DNA methyltransferase KEGG: cje:Cj0208 DNA modification methylase (adenine-specific methyltransferase)	Adenine-specific DNA methylase	Putative DNA modification methylase	D12 class N6 adenine-specific DNA methyltransferase	Site-specific DNA-methyltransferase	Ulcer associated adenine specific DNA methyltransferase	Putative DNA modification methylase	DamH	Type II adenine specific DNA methyltransferase	Modification methylase NlaIII	
HELPY01180	Ulcer-associated gene restriction endonuclease	ulcer-associated gene restriction endonuclease Region start changed from 259192 to 259057 (135 bases)	
HELPY01181	Serine acetyltransferase	serine O-acetyltransferase	Putative serine acetyltransferase	Serine acetyltransferase	Putative serine acetyltransferase; serine O- acetyltransferase	Serine acetyltransferase	Putative serine acetlyltransferase of prophage CP -933T	CDS_ID OB0098 serine O-acetyltransferase	similar to AE007583-11|AAK78664.1| percent identity: 58 in 182 aa putative serine O-acetyltransferase	Serine acetyltransferase	Serine O-acetyltransferase	Serine O-acetyltransferase	Serine acetyltransferase	CysE protein	Serine acetyltransferase	Serine acetyltransferase	Serine O-acetyltransferase	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 serine acetyltransferase	Serine acetyltransferase	serine acetyltransferase, putative	Serine acetyltransferase	identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172 serine acetyltransferase	CysE	PROBABLE SERINE ACETYLTRANSFERASE CYSE	Mb2363, -, len: 229 aa. Equivalent to Rv2335, len: 229 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 229 aa overlap). Probable cysE, serine acetyltransferase (EC 2.3.1.30), equivalent to O32979|CYSE|ML0838 SERINE ACETYLTRANSFERASE from Mycobacterium leprae (227 aa), FASTA scores: opt: 1152, E(): 9.6e-62, (76.4% identity in 229 aa overlap). Also highly similar, except in C-terminal part, to others e.g.  Q9HXI6|CYSE|PA3816 O-ACETYLSERINE SYNTHASE from Pseudomonas aeruginosa (258 aa), FASTA scores: opt: 737, E(): 6e-37, (61.3% identity in 168 aa overlap); P23145|NIFP_AZOCH PROBABLE SERINE ACETYLTRANSFERASE from Azotobacter chroococcum mcd 1 (269 aa), FASTA scores: opt: 718, E(): 8.4e-36, (55.45% identity in 220 aa overlap); Q06750|CYSE_BACSU SERINE ACETYLTRANSFERASE from Bacillus subtilis (217 aa), FASTA scores: opt: 640, E(): 3.1e-31, (48.0% identity in 200 aa overlap); etc. Contains PS00101 Bacterial hexapeptide-repeat containing-transferases signature. BELONGS TO THE CYSE/LACA/LPXA/NODL FAMILY OF ACETYLTRANSFERASES. COMPOSED OF MULTIPLE REPEATS OF [LIV]-G-X(4). PROBABLE SERINE ACETYLTRANSFERASE CYSE (SAT)	InterProMatches:IPR005881; Cellular Component: cytoplasm (GO:0005737), Biological Process: cysteine biosynthesis from serine (GO:0006535), Molecular Function: serine O-acetyltransferase activity (GO:0009001) serine acetyltransferase	serine O-acetyltransferase	Serine acetyltransferase	Serine acetyltransferase	
HELPY01183	ATP synthase subunit c	F0F1-type ATP synthaseC chain	ATP synthase C chain	ATP synthase CF0 subunit III	Lin0134 protein	similar to ATP synthase C chain hypothetical protein	lipid-binding protein H+-transporting two-sector ATPase	ATP synthase subunit c	identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260 ATP synthase F0, C subunit	H+-transporting ATP synthase chain c	ATP synthase subunit c	ATP synthase C chain	identified by similarity to SP:Q05366; match to protein family HMM PF00137 ATP synthase F0, C subunit family protein	ATP synthase subunit c	ATP synthase F0, subunit C	ATP synthase C chain	ATP synthase F0, C subunit precursor	ATP synthase F0, C subunit	ATP synthase F0, C subunit identified by similarity to SP:P12409; match to protein family HMM PF00137; match to protein family HMM TIGR01260	ATP synthase F0, C subunit	ATP synthase F0, C subunit	ATP synthase F0, C subunit identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260	ATP synthase F0, C subunit	ATP synthase F0, C subunit precursor	ATP synthase C chain	ATP synthase F0, C subunit	ATP synthase C chain identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260	ATP synthase F0, C subunit	ATP synthase F0, subunit c	
HELPY01184	Polyribonucleotide nucleotidyltransferase	polyribonucleotide nucleotidyltransferase	polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	CDS_ID OB1604 polyribonucleotide nucleotidyltransferase alpha chain	similar to Z98741-17|CAB11392.1| percent identity: 68 in 752 aa putative guanosine pentaphosphate synthetase and polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	SC3C3.23, gpsI, guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase, partial CDS, len: >716 aa; almost identical to Streptomyces antibioticus GpsI TR:Q53597 (EMBL:U19858) guanosine pentaphosphate synthetase (740 aa), 93.6% identity in 715 aa overlap. Contains Pfam match to entry PF00013 KH-domain, KH domain family of RNA binding proteins, score 27.40, E-value 0.00033 and Pfam match to entry PF00575 S1, S1 RNA binding LACR_STAAU motif, score 28.80, E-value 0.00013 SC9A10.01, gpsI, guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase, partial CDS, len: >57 aa; almost identical to Streptomyces antibioticus GpsI TR:Q53597 (EMBL:U19858) guanosine pentaphosphate synthetase (740 aa), 87.9% identity in 58 aa overlap. Overlaps and extends SC3C3.23. guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	
HELPY01185	Putative uncharacterized protein	Putative phosphoribosyltransferase	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	predicted phosphoribosyltransferase	conserved hypothetical protein conserved hypothetical protein	Phosphoribosyltransferase	Putative uncharacterized protein	Putative uncharacterized protein	Na+/H+ antiporter	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Phosphoribosyltransferase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative phosphoribosyltransferase	

HELPY01187	Conserved hypothetical secreted protein	identified by similarity to SP:Q9KUR9; match to protein family HMM PF04453 organic solvent tolerance protein, putative	Organic solvent tolerance protein	Putative role in outermembrane permeability	Organic solvent tolerance protein, putative	organic solvent tolerance protein	putative periplasmic protein identified by match to protein family HMM PF04453	organic solvent tolerance protein (Q8PP22) Organic solvent tolerance protein precursor( Function unclear	Organic solvent tolerance protein PFAM: OstA family protein; Organic solvent tolerance protein KEGG: gme:Gmet_2474 organic solvent tolerance protein, putative	organic solvent tolerance protein, putative identified by match to protein family HMM PF04453	Organic solvent tolerance protein	Organic solvent tolerance protein	Putative organic solvent tolerance protein	PFAM: OstA family protein; Organic solvent tolerance protein KEGG: slo:Shew_0882 organic solvent tolerance protein Organic solvent tolerance protein	Putative periplasmic protein	Putative uncharacterized protein	Conserved hypothetical membrane protein	organic solvent tolerance protein	Dimethyladenosine transferase	Organic solvent tolerance protein	Protein CysQ	Putative periplasmic protein	Putative periplasmic protein	Organic solvent tolerance protein	Organic solvent tolerance protein	Organic solvent tolerance protein	Putative organic solvent tolerance protein	Organic solvent tolerance protein	Organic solvent tolerance protein	
HELPY01188	Putative uncharacterized protein	RDD protein	hypothetical protein	putative membrane protein Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01189	Phosphoribosylamine--glycine ligase	glycinamide ribonucleotide synthetase	phosphoribosylglycinamide synthetase (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase)	Putative phosphoribosylglycinamide synthetase	Phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase	Phosphoribosylamine-glycine ligase	Phosphoribosylamine--glycine ligase	Putative phosphoribosylamine-glycine ligase; phosphoribosyl glycinamide synthetase	Phosphoribosylamine--glycine ligase	Putative phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase	CDS_ID OB0750 phosphoribosylglycinamide synthetase	similar to Z80226-17|CAB02384.1| percent identity: 61 in 421 aa 5'-phosphoribosylglycinamide synthetase	phosphoribosylamine-glycine ligase	Phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase	Phosphoribosylglycinamide synthetase	Phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase	SCD25.04, purD, phosphoribosylamine-glycine ligase (EC 6.3.4.13), len: 416 aa. Highly similar to many e.g.  Mycobacterium tuberculosis SW:PUR2_MYCTU (EMBL; Z80226) phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase) MTCY369.17 (422 aa), fasta scores opt: 957 z-score: 1033.0 E(): 0 58.3% identity in 424 aa overlap. Contains a PS00184 Phosphoribosylglycinamide synthetase signature and a Pfam match to entry PF01071 GARS, Phosphoribosylglycinamide synthetase (GARS). phosphoribosylamine-glycine ligase (EC 6.3.4.13)	Phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase	Phosphoribosylamine--glycine ligase	Phosphoribosylamine-glycine ligase	Phosphoribosylamine--glycine ligase	Residues 1 to 429 of 429 are 98 pct identical to residues 1 to 429 of a 429 aa protein from Escherichia coli K12 ref: NP_418433.1 phosphoribosylglycinamide synthetase = GAR synthetase	
HELPY01191	ABC transporter, ATP-binding protein	putative ABC transport system, ATP-binding protein	ABC transporter, ATP-binding protein	ABC transporter (ATP-binding protein) (P54591) Hypothetical ABC transporter ATP-binding protein yhcG(P54591) Hypothetical ABC transporter ATP-binding protein yhcG High confidence in function and specificity	ABC-type multidrug transport system, ATPase component	Uncharacterized ABC transporter, ATPase component	hypothetical protein	ABC transporter related	ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein	Uncharacterized ABC transporter, ATPase component	ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein	ABC transport system, ATP binding protein	
HELPY01192	Undecaprenyl pyrophosphate synthetase	undecaprenyl pyrophosphate synthetase	undecaprenyl pyrophosphate synthetase (UPP synthetase)	Putative undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase 2	Undecaprenyl pyrophosphate synthetase	CDS_ID OB1590 undecaprenyl pyrophosphate synthetase	similar to AX066667-1|CAC26561.1| percent identity: 89 in 243 aa putative undecaprenyl diphosphate synthase	Probable undecaprenyl pyrophosphate synthetase	undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	SCC121.12c, uppS, undecaprenyl phosphate synthetase, len: 277 aa; similar to SW:UPPS_MYCTU (EMBL:Z95208) Mycobacterium tuberculosis undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (Upp synthetase) UppS, 296 aa; fasta scores: opt: 1144 z-score: 1315.8 E(): 0; 63.6% identity in 247 aa overlap and to SW:UPPS_ECOLI (EMBL:D83536) Escherichia coli undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (Upp synthetase) UppS, 253 aa; fasta scores: opt: 642 z-score: 743.0 E(): 0; 43.1% identity in 232 aa overlap. Contains Pfam match to entry PF01255 UPF0015 undecaprenyl phosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase 1	Undecaprenyl pyrophosphate synthetase	
HELPY01193	D-lactate dehydrogenase	SC5F1.26, possible oxidoreductase, len: 998 aa; similar to TR:Q9KKW5 (EMBL:AE004425) Vibrio cholerae oxidoreductase/iron-sulfur cluster-binding protein VCA0985, 959 aa; fasta scores: opt: 1999 z-score: 2189.0 E(): 0; 35.3% identity in 966 aa overlap. Contains Pfam matches to entries PF01565 FAD_binding_4, FAD binding domain and PF00037 fer4, 4Fe-4S binding domain and matches to Prosite entries PS00422 Granins signature 1 and PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature putative oxidoreductase	Fe-S oxidoreductase	Probable ferredoxin	identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913 oxidoreductase, FAD-binding, iron-sulfur cluster-binding	Putative uncharacterized protein dld	D-LACTATE DEHYDROGENASE	D-lactate dehydrogenase, putative	FAD linked oxidase-like	FAD/FMN-containing dehydrogenase COG0277	D-lactate dehydrogenase	hypothetical protein similarity to COG0277 FAD/FMN-containing dehydrogenases(Evalue: 1E-152)	FAD linked oxidase domain protein	D-lactate dehydrogenase (Q57252) Protein HI1163(Q57252) Protein HI1163 High confidence in function and specificity	conserved hypothetical iron-sulfur bindinding oxidase Conserved hypothetical iron-sulfur binding oxidase.  Homology to pa4772 of P. aeruginosa of 53% (pir|H83050) InterPro: FAD linked oxidase C-terminal (IPR004413) Pfam: FAD binding domain ; Fad linked oxidase, C-terminal domain Tigrfam: glcD: glycolate oxidase subunit GlcD no signal peptide no TMHs Family membership	iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913	FAD linked oxidase domain protein PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein KEGG: fra:Francci3_2007 FAD linked oxidase-like	D-lactate dehydrogenase, putative	putative D-lactate deshydrogenase Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	D-lactate dehydrogenase	Putative oxidoreductase	4Fe-4S ferredoxin, FAD dependent	FAD linked oxidase-like PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like KEGG: hch:HCH_01266 FAD/FMN-containing dehydrogenase	Oxidoreductase, FAD-binding, iron-sulfur cluster- binding	D-lactate dehydrogenase	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein KEGG: shn:Shewana3_2905 FAD linked oxidase domain protein FAD linked oxidase domain protein	D-lactate dehydrogenase (cytochrome) unknown EC_number=1.1.2.4 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein KEGG: pen:PSEEN0766 D-lactate deshydrogenase	D-lactate dehydrogenase	FAD linked oxidase domain protein	
HELPY01194	Putative uncharacterized protein	hypothetical protein (rhodanese domain) hypothetical protein	Putative	hypothetical protein	conserved hypothetical protein Function unclear	Thiosulfate sulfurtransferase	Putative uncharacterized protein	Rhodanese domain protein precursor	Putative phage shock protein E	Putative uncharacterized protein	Rhodanese domain protein	Putative uncharacterized protein	Rhodanese domain protein	Putative uncharacterized protein	
HELPY01195	Uroporphyrinogen III cosynthase	Uroporphyrinogen-III synthase HemD	Putative UROPORPHYRINOGEN-III SYNTHASE	Uroporphyrinogen III synthase HEM4	uroporphyrinogen III cosynthase	uroporphyrinogen-III synthase identified by match to protein family HMM PF02602	(Q59335) Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS) (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing])(Q59335) Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS) (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing]) Function unclear	uroporphyrinogen-III synthase identified by match to protein family HMM PF02602	Uroporphyrinogen-III synthase	Uroporphyrinogen-III synthase	Uroporphyrinogen-III synthase	Uroporphyrinogen-III synthetase	Putative uroporphyrinogen III cosynthase HemD	Uroporphyrinogen-III synthase	Uroporphyrinogen-III synthase	Uroporphyrinogen-III synthase	Uroporphyrinogen-III synthase	Uroporphyrinogen III cosynthase	Uroporphyrinogen-III synthase	Uroporphyrinogen III cosynthase	Uroporphyrinogen III cosynthase	Uroporphyrinogen-III synthase	
HELPY01196	Protein crcB homolog	hypothetical conserved protein	Protein crcB homolog 2	Protein crcB homolog 2	Protein crcB homolog 1	Protein crcB homolog	CDS_ID OB2718 hypothetical protein	hypothetical protein	Protein crcB homolog 1	Protein crcB homolog	Protein crcB homolog 2	Protein crcB homolog 1	Protein crcB homolog 1	SC4G1.10, possible integral membrane protein, len: 154 aa; similar to TR:P95089 (EMBL:Z83866) Mycobacterium tuberculosis hypothetical 14.3 kDa protein MTCY22D7.12c, 132 aa; fasta scores: opt: 258 z-score: 319.8 E(): 2.4e-10; 42.1% identity in 121 aa overlap. Contains possible hydrophobic membrane spanning regions putative integral membrane protein	Protein crcB homolog	Protein crcB homolog 3	chromosome condensation protein CrcB homolog	Protein crcB homolog 1	Similar to integral membrane protein possibly involved in chromosome condensation hypothetical protein	conserved gene CrcB protein, camphor resistance	Similar to integral membrane protein possibly involved in chromosome condensation hypothetical protein	identified by match to protein family HMM PF02537 CrcB family protein	Protein crcB homolog	Protein crcB homolog	Protein crcB homolog 1	identified by similarity to SP:P37002; match to protein family HMM PF02537; match to protein family HMM TIGR00494 CrcB	Protein crcB homolog 2	Protein crcB homolog 2	Mb3097, -, len: 126 aa. Equivalent to Rv3070, len: 126 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 126 aa overlap). Probable conserved integral membrane protein, similar to several hypothetical and CRCB bacterial proteins e.g. Q9FC37|SC4G1.12 PUTATIVE INTEGRAL MEMBRANE PROTEIN from Streptomyces coelicolor (124 aa), FASTA scores: opt: 280, E(): 3.1e-11, (45.3% identity in 117 aa overlap); O25823|HP1225 CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN from Helicobacter pylori (Campylobacter pylori) (130 aa), FASTA scores: opt: 225, E(): 1e-07, (33.35% identity in 123 aa overlap); O07590|YHDU HYPOTHETICAL 12.4 KDA PROTEIN from Bacillus subtilis (118 aa), FASTA scores: opt: 224, E(): 1.1e-07, (37.85% identity in 111 aa overlap); Q9KVS9|VC0060 CRCB PROTEIN (see citation below; seems involved in camphor resistance and chromosome condensation, promoting or protecting chromosome folding) from Vibrio cholera (126 aa), FASTA scores: opt: 221, E(): 1.8e-07, (33.35% identity in 126 aa overlap); etc. PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN	
HELPY01197	Oxygen-independent coproporphyrinogen III oxidase	coproporphyrinogen III oxidase	coproporphyrinogen III oxidase	Putative oxygen-independent coproporphyrinogen III oxidase	Putative coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase, putative	Putative oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE	Putative coproporphyrinogen III oxidase	Putative oxygen-independent coproporphyrinogen III oxidase	Putative oxygen-independent coproporphyrinogen III oxidase	Putative oxidase	CDS_ID OB1971; oxygen-independent coproporphyrinogen oxidase III	similar to AL646068-120|CAD15868.1| percent identity: 36 in 396 aa putative oxygen-independent coproporphyrinogen III oxidase	Putative oxygen-independent coproporphyrinogen III oxidase, hemN	oxygen-independent coproporphyrinogen III oxidase (hemN)	Oxygen-independent coproporphyrinogen III oxidase, putative	Oxygen-independent coproporphyrinogen-III oxidase	Possible oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase protein	Coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen-III oxidase -like protein BU550	Coproporphyrinogen III oxidase	SCC77.26c, possible oxygen-independent coproporphyrinogen III oxidase (EC 1.-.-.-), len: 435 aa.  Highly similar to many putative coproporphyrinogen III oxidases including: Bacillus subtilis SW:HEMN_BACSU (EMBL:X91655) probable oxygen-independent coproporphyrinogen III oxidase (366 aa), fasta scores opt: 490 z-score: 555.3 E(): 1.5e-23 30.8% identity in 328 aa overlap and Mycobacterium tuberculosis SW:HEMN_MYCTU (EMBL:Z81368) probable oxygen-independent coproporphyrinogen III oxidase (375 aa), fasta scores opt: 1358 z-score: 1530.5 E():0 56.5% identity in 382 aa overlap. Contains a Prosite hit to PS00017 ATP/GTP-binding site motif A (P-loop). putative oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase and related FeS oxidoreductases	Coproporphyrinogen III oxidase	PROBABLE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE	
HELPY01198	Cytochrome c-553	cytochrome c, class IC	Cytochrome c-553	Cytochrome c, class I precursor	hypothetical protein	Cytochrome c, class I	cytochrome c553 identified by match to protein family HMM PF00034	Cytochrome c-553 High confidence in function and specificity	Cytochrome c, class I precursor	Cytochrome c, class I	Cytochrome c, class I	Putative uncharacterized protein	Cytochrome c-553	CytoChrome c-553	Putative uncharacterized protein	Cytochrome c 553	Cytochrome C553	Cytochrome c-553	Putative cytochrome c553; putative signal peptide	
HELPY01199	RNA pyrophosphohydrolase	Probable (di)nucleoside polyphosphate hydrolase	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	invasion-associated protein A	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	Invasion-associated protein A	(Di)nucleoside polyphosphate hydrolase	Residues 1 to 176 of 176 are 99 pct identical to residues 1 to 176 of a 176 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289382.1 putative invasion protein	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	Similar to probable (di)nucleoside polyphosphate hydrolase NudH hypothetical protein	conserved gene (di)nucleoside polyphosphate hydrolase	Similar to probable (di)nucleoside polyphosphate hydrolase NudH hypothetical protein	identified by match to protein family HMM PF00293 hydrolase, NUDIX family, NudH subfamily	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	identified by similarity to SP:Q46930; match to protein family HMM PF00293 (di)nucleoside polyphosphate hydrolase	Nucleoside polyphosphate hydrolase protein	RNA pyrophosphohydrolase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark probable (di)nucleoside polyphosphate hydrolase	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	IPR000086: NUDIX hydrolase putative invasion protein; NTP pyrophosphohydrolase	MutT/Nudix family pyrophosphatase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	
HELPY01200	Aspartokinase	Aspartokinase	Aspartokinase, alpha and beta subunits	Aspartokinase	ASPARTOKINASE	Aspartokinase	Aspartokinase	similar to AX063743-1|CAC25113.1| percent identity: 95 in 421 aa aspartokinase	aspartokinase, alpha and beta subunits	Aspartokinase	Aspartokinase	Aspartokinase	SC66T3.26c, ask, probable aspartokinase, len: 425 aa; highly similar to many e.g. SW:AKAB_MYCSM (EMBL:Z17372), ask, Mycobacterium smegmatis aspartokinase (421 aa), fasta scores; opt: 1839 z-score: 1990.8 E(): 0, 67.4% identity in 427 aa overlap. Homologous genes encode both the alpha and beta subunits of ask by using alternative initiation codons. Codon 253 represents the equivalent position in this sequence, by similarity.  Contains Pfam match to entry PF00696 aakinase, Aspartate kinases, Glutamate kinases and Gamma glutamate phospho-reductases and PS00324 Aspartokinase signature putative aspartokinase	Aspartokinase	Aspartokinase	Aspartokinase	Aspartokinase, alpha and beta subunits	Aspartokinase	Aspartokinase	Aspartokinase	Aspartokinase	aspartate kinase	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 aspartate kinase, monofunctional class	Aspartokinase	Aspartokinase	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 aspartate kinase, monofunctional class	Aspartokinase	Aspartokinase	InterProMatches:IPR001341, IPR005260; Molecular Function: aspartate kinase activity (GO:0004072), Biological Process: amino acid biosynthesis (GO:0008652) aspartokinase II alpha subunit and beta subunit	
HELPY01201	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	DnaA initiator-associating factor for replication initiation HobA	
HELPY01202	DNA polymerase III delta prime subunit	Putative DNA poymerase III subunit delta'	DNA polymerase III, delta prime subunit	DNA polymerase III delta prime subunit	DNA polymerase III delta subunit (O69688) DNA polymerase III subunit gamma/tau (EC 2.7.7.7) Function unclear	DNA polymerase III, delta' subunit	DNA polymerase III, delta' subunit	Putative DNA polymerase III delta prime subunit HolB	DNA polymerase III subunit delta	DNA polymerase III subunit delta'	DNApolymerase III delta prime subunit	DNA polymerase III delta prime subunit HolB	DNA polymerase III delta prime subunit	DNA polymerase III delta' subunit	
HELPY01203	Dihydropteroate synthase	dihydropteroate synthase	Putative dihydropteroate synthase	Dihydropteroate synthase	Dihydropteroate synthase	Dihydropteroate synthase	DIHYDROPTEROATE SYNTHASE	Dihydropteroate synthase	Dihydropteroate synthase	7,8-dihydropteroate synthase	CDS_ID OB0085 dihydropteroate synthase	Putative dihydropteroate synthase	Dihydropteroate synthase	Dihydropteroate synthase	Dihydropteroate synthase	Dihydropteroate synthase	Dihydropteroate synthase	SCE9.05, folP, probable dihydropteroate synthase, len: 288 aa; similar to many e.g. SW:DHPS_ECOLI (EMBL:X68776), FolP, Escherichia coli dihydropteroate synthase (282 aa), fasta scores; opt: 618 z-score: 694.3 E(): 2.4e-31, 39.9% identity in 268 aa overlap. Contains Pfam match to entry PF00809 DHPS, Dihydropteroate synthase, score 418.00, E-value 8.9e-122, PS00792 Dihydropteroate synthase signature 1 and PS00793 Dihydropteroate synthase signature 2 putative dihydropteroate synthase	Dihydropteroate synthase	Dihydropteroate synthase	Sul protein	Residues 8 to 304 of 304 are 99 pct identical to residues 1 to 297 of a 297 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289751.1 7,8-dihydropteroate synthase	Dihydropteroate synthase	Dihydropteroate synthase	dihydropteroate synthase	Dihydropteroate synthase	FolP protein	Probable 7,8-dihydropteroate synthase protein	Dihydropteroate synthase	
HELPY01204	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01205	Uncharacterized transporter HP_1234	Predicted permease	Integral membrane protein, DUF6	permease, drug/metabolite transporter (DMT) superfamily	Probable transmembrane protein	identified by match to protein family HMM PF00892 membrane protein	Probable membrane protein	Permease of the drug/metabolite transporter, DMT superfamily	identified by similarity to SP:Q9ZJZ2; match to protein family HMM PF00892 integral membrane protein	Hypothetical transport protein JHP1155	Conserved hypothetical integral membrane protein	Putative membrane protein	Similar to Q8XMR0 Probable lic-1 operon protein from Clostridium perfringens (322 aa). FASTA: opt: 370 Z-score: 410.4 E(): 5.7e-15 Smith-Waterman score: 396; 30.492 identity in 305 aa overlap ORF ftt0157c licB-like transmembrane protein	identified by match to protein family HMM PF00892 membrane protein	permease; possible drug/metabolite exporter family protein	Hypothetical transport protein	similar to unknown protein	probable transmembrane protein	Best Blastp Hit: emb|CAB85013.1| (AL162757) conserved hypothetical integral membrane protein [Neisseria meningitidis] COG0697 Predicted permeases conserved hypothetical protein	putative membrane protein	transmembrane protein 20 [Source:HGNC Symbol;Acc:26607]	protein of unknown function DUF6, transmembrane	Putative uncharacterized protein	protein of unknown function DUF6, transmembrane PFAM: protein of unknown function DUF6, transmembrane: (4e-07) UAA transporter: (0.0036) KEGG: sil:SPO0263 membrane protein, ev=1e-113, 65% identity	conserved hypothetical integral membrane protein	putative membrane protein identified by match to protein family HMM PF00892	Integral membrane protein, DUF6	hypothetical protein similarity to COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily(Evalue: 1E-27)	protein of unknown function DUF6, transmembrane	
HELPY01206	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative	Putative integral membrane protein	conserved hypothetical integral membrane protein	putative integral membrane protein	putative integral membrane protein conserved hypothetical protein	membrane protein, putative	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	Putative integral membrane protein	Conserved hypothetical membrane protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative integral membrane protein	Conserved hypothetical integral membrane protein	Integral membrane protein	Putative uncharacterized protein	
HELPY01207	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF04368	conserved hypothetical protein conserved hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF04368	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01208	Carbamoyl-phosphate synthase small chain	carbamoyl-phosphate synthase(arginine-specific) small chain	Carbamoyl-phosphate synthase small chain	CDS_ID OB1490; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	Carbamoyl-phosphate synthase small chain	Carbamoyl-phosphate synthase small chain	Carbamoyl-phosphate synthase small chain	identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368 carbamoyl-phosphate synthase, small subunit	carbamoyl phosphate synthetase, small chain	Carbamoyl-phosphate synthase small chain	Carbamoylphosphate synthase small subunit	identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368 carbamoyl-phosphate synthase, small subunit	arginine-specific carbamoyl-phosphate synthase small chain	Carbamoylphosphate synthase small subunit	Carbamoyl-phosphate synthase small chain	carbamoyl-phosphate synthase small chain	Carbamoyl-phosphate synthase small chain	Ortholog of S. aureus MRSA252 (BX571856) SAR1178 putative carbamoyl-phosphate synthase, pyrimidine-specific, small chain	carbamoyl-phosphate synthase small chain	Similar to sp|Q92N95|CARA_RHIME sp|P57245|CARA_BUCAI sp|P14845|CARA_SALTY sp|Q98IA7|CARA_RHILO sp|Q8YIB8|CARA_BRUME; Ortholog to ERGA_CDS_05320 Carbamoyl-phosphate synthase small chain	carbamoyl-phosphate synthase small chain	identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368 carbamoyl-phosphate synthase, small subunit	COG0505 CarA carbamoylphosphate synthase small subunit carbamoyl-phosphate synthase, small chain	Carbamoylphosphate synthase (glutamine-hydrolysing) light subunit	Similar to Bacillus subtilis carbamoyl-phosphate synthase, pyrimidine-specific, small chain CarA or PyrAA or BSU15510 SWALL:CARA_BACSU (SWALL:P25993) (364 aa) fasta scores: E(): 2.1e-39, 41.04% id in 363 aa, and to Pyrococcus furiosus carbamoyl-phosphate synthase small chain CarA or PF1713 SWALL:CARA_PYRFU (SWALL:Q8U086) (371 aa) fasta scores: E(): 1.6e-59, 46.4% id in 362 aa putative carbamoyl-phosphate synthase small chain	Carbamoylphosphate synthase small subunit CarA protein	Similar to CARA_ZYMMO (O50235) Carbamoyl-phosphate synthase small chain from Zymomonas mobilis (374 aa).  FASTA: opt: 1319 z-score: 1530.2 E(): 2.2e-77 Smith-Waterman score: 1319; 52.660identity in 376 aa overlap Carbamoyl-phosphate synthase small chain	Carbamoyl-phosphate synthase small chain	Similar to Sulfolobus solfataricus carbamoyl-phosphate synthase small chain CarA or Sso0640 SWALL:CARA_SULSO (SWALL:Q59968) (367 aa) fasta scores: E(): 1.2e-37, 34.21% id in 380 aa, and to Streptomyces coelicolor carbamoyl-phosphate synthase small chain CarA or PyrAa or SCO1484 or SC9C5.08c SWALL:CARA_STRCO (SWALL:Q9KXR5) (380 aa) fasta scores: E(): 3.4e-74, 52.29% id in 371 aa carbamoyl-phosphate synthase small chain	
HELPY01209	Formamidase	Formamidase	Formamidase	possible amidohydrolase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Formamidase	putative formamidase similarity:fasta; SWALL:AMIF_HELPY (SWALL:O25836); Helicobacter pylori; formamidase; amiF; length 334 aa; 335 aa overlap; query 1-331 aa; subject 1-334 aa similarity:fasta; SWALL:AMIF_BRAJA (SWALL:Q89H51); Bradyrhizobium japonicum; formamidase; amiF; length 337 aa; 336 aa overlap; query 1-336 aa; subject 1-336 aa	formamidase	aliphatic amidase (O25836) Formamidase (EC 3.5.1.49) (Formamide amidohydrolase) High confidence in function and specificity	Formamidase	Formamidase	aliphatic amidase	Formamidase	possible amidohydrolase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Aliphatic amidase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Putative uncharacterized protein	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	Formamidase	Formamidase	Formamidase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mex:Mext_1704 formamidase	Formamidase	Formamidase	Formamidase	Formamidase	
HELPY01211	Maf-like protein HP_1240	Maf-like protein TTE0896	identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 maf protein	identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172 maf protein, putative	Septum formation protein	similar to BR0248, maf protein Maf-1, maf protein	Maf-like protein JHP1161	Maf-like protein MCA0378	implicated in inhibition of septum formation (maf); COG0424 nucleotide-binding protein	identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 maf protein	Maf-like protein	septum formation protein MaF identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172	septum formation protein MaF identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172	maf protein	Maf-like protein	putative Maf septum inhibitor protein similarity:fasta; with=UniProt:Y615_RHIME (EMBL:SME591784); Rhizobium meliloti (Sinorhizobium meliloti).; Maf-like protein R00615.; length=206; id 76.699; 206 aa overlap; query 1-206; subject 1-206	maf protein	maf protein TIGRFAM: maf protein: (1.4e-48) PFAM: Maf-like protein: (3.4e-62) KEGG: rsp:RSP_0625 putative Maf-like protein, ev=1e-79, 76% identity	septum formation protein similar to maf (SMc02311) [Sinorhizobium meliloti] and AGR_C_943p [Agrobacterium tumefaciens] Similar to entrez-protein:Q92S22 Putative location:bacterial cytoplasm Psort-Score: 0.0951; go_function: molecular_function unknown [goid 0005554]	maf protein	maf protein	Maf protein	conserved hypothetical protein identified by match to protein family HMM PF02545	maf protein (O25838) Maf-like protein similar to HP1240 High confidence in function and specificity	septum formation protein Maf identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172	Septum formation protein Maf	maf protein, putative identified by match to protein family HMM PF02545	maf protein TIGRFAM: maf protein PFAM: Maf-like protein KEGG: mlo:mll6452 septum formation maf protein	Septum formation protein	
HELPY01212	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	CDS_ID OB2009 alanyl-tRNA synthetase	Alanyl-tRNA synthetase	similar to AP003589-138|BAB74117.1| percent identity: 41 in 888 aa putative alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	
HELPY01213	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to OMNI:NTL01CJ00422; match to protein family HMM PF04325 conserved hypothetical protein	Putative uncharacterized protein	Putative	Hypothetical protein	identified by similarity to OMNI:SO3280; match to protein family HMM PF04325 conserved hypothetical protein	Protein of unknown function DUF465	hypothetical protein	Best Blastp Hit: gb|AAF41455.1| (AE002456) conserved hypothetical protein [Neisseria meningitidis MC58] >gi|7379938|emb|CAB84513.1| (AL162755) hypothetical protein NMA1258 [Neisseria meningitidis] conserved hypothetical protein	conserved hypothetical protein	protein of unknown function DUF465	Putative uncharacterized protein	Putative uncharacterized protein	Hypothetical protein	hypothetical protein	Hypothetical protein	Putative uncharacterized protein ydcH	conserved domain protein identified by match to protein family HMM PF04325	Hypothetical protein	conserved hypothetical protein similar to HP1242 Function unclear	Putative uncharacterized protein	conserved hypothetical protein identified by match to protein family HMM PF04325	protein of unknown function DUF465 PFAM: protein of unknown function DUF465 KEGG: son:SO4134 hypothetical protein	Hypothetical protein	protein of unknown function DUF465 PFAM: protein of unknown function DUF465 KEGG: son:SO4134 hypothetical protein	Hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF04325	conserved hypothetical protein Code: S; COG: COG2841	

HELPY01214	Outer membrane protein	outer membrane protein BabA	Outer membrane protein BabA	Outer membrane protein	
HELPY01215	30S ribosomal protein S18	30S ribosomal protein S18 (BS21)	30S ribosomal protein S18	30S ribosomal protein S18	ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	CDS_ID OB3477 30S ribosomal protein S18	30S ribosomal protein S18	similar to AE006918-14|AAK44283.1| percent identity: 49 in 79 aa putative 30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein s18	
HELPY01216	Single-stranded DNA-binding protein	single-stranded DNA-binding protein	single-strand DNA-binding protein	Single-stranded DNA-binding protein	CDS_ID OB3478; phage-related protein single-strand DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-strand binding protein (SSB) (Helix-destabilizing protein)	conserved gene single strand binding protein	Single-stranded DNA-binding protein	identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621 single-stranded DNA-binding protein	Single-stranded DNA-binding protein	single-stranded DNA-binding protein	Single-stranded DNA-binding protein 1	Single-strand DNA-binding protein of phage phi PVL	Single-stranded DNA-binding protein	identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621 single-strand binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Mb0055, ssb, len: 164 aa. Equivalent to Rv0054, len: 164 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 164 aa overlap). Probable ssb, single-strand binding protein, equivalent to highly similar to others e.g. SSB_MYCLE|P46390 single-strand binding protein from Mycobacterium leprae (140 aa), FASTA scores: opt: 792, E(): 0, (92.6% identity in 135 aa overlap); and AAK30583.1|AF349434 single-stranded DNA-binding protein from Mycobacterium smegmatis (165 aa).  Also highly similar to others e.g. T36594 probable single-strand binding protein from Streptomyces coelicolor (199 aa); etc. Also similar to Rv2478c|MTV008_34c CONSERVED HYPOTHETICAL PROTEIN from Mycobacterium tuberculosis (161 aa), FASTA score: E (): 1.1e-06. Note that the putative product of this CDS corresponds to spot 3_210 identified in culture supernatant by proteomics at the Max-Planck-Institut fuer Infektionsbiologie (see citations below). BELONGS TO THE SSB FAMILY. PROBABLE SINGLE-STRAND BINDING PROTEIN SSB (HELIX-DESTABILIZING PROTEIN)	single-strand DNA-binding protein SSB	COG0629 Single-stranded DNA-binding protein single-stranded DNA-binding protein	Single-stranded DNA-binding protein	
HELPY01217	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6 (BS9)	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	CDS_ID OB3479 30S ribosomal protein S6	similar to AL022118-16|CAA17954.1| percent identity: 66 in 95 aa putative 30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	SCH24.28, rpsF, probable 30S ribosomal protein S6, len: 96 aa; similar to many e.g. SW:RS6_BACSU (EMBL:D26185), rpsF, Bacillus subtilis 30S ribosomal protein S6 (95 aa), fasta scores; opt: 249 z-score: 343.8 E(): 7.7e-12, 36.2% identity in 94 aa overlap. Contains Pfam match to entry PF01250 Ribosomal_S6, Ribosomal protein S6, score 148.40, E-value 1.3e-40 and PS01048 Ribosomal protein S6 signature putative 30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein s6	Residues 1 to 131 of 131 are 100 pct identical to residues 1 to 131 of a 135 aa protein RS6_ECOLI sp: P02358 30S ribosomal protein S6	
HELPY01218	Protein HP_1247	Putative uncharacterized protein	Protein JHP1168	DNA polymerase III, delta	DNA polymerase III holoenzyme delta subunit	DNA polymerase III, delta subunit superfamily identified by match to protein family HMM PF06144	putative DNA polymerase III, delta subunit (O25842) Protein HP1247 High confidence in function and specificity	conserved hypothetical protein identified by match to protein family HMM PF06144	Putative uncharacterized protein	Putative uncharacterized protein	DNA polymerase III	Putative DNA polymerase III, delta subunit	Putative uncharacterized protein	DNA polymerase III, delta subunit superfamily	DNA polymerase III, delta subunit superfamily	DNA polymerase III, delta subunit superfamily	DNA polymerase III subunit delta	DNA polymerase III holoenzyme delta subunit	DNA polymerase III, delta	Putative uncharacterized protein	DNA polymerase III holoenzyme delta subunit	DNA polymerase III delta subunit	
HELPY01219	Ribonuclease R	Putative exoribonuclease R	similar to AP002994-32|BAB47713.1| percent identity: 35 in 452 aa putative ribonuclease R	conserved hypothetical protein	Exoribonuclease II	ribonuclease II	identified by match to protein family HMM PF00773 RNB-like protein	Putative uncharacterized protein	Ribonuclease R	Putative exoribonuclease R	best blastp match gb|AAK33503.1| (AE006508) putative exoribonuclease R [Streptococcus pyogenes M1 GAS] putative exoribonuclease R	identified by sequence similarity; putative; ORF located using Blastx; COG0557 VACB-like ribonuclease II	identified by sequence similarity; putative; ORF located using Blastx; COG0557 VACB-like ribonuclease II	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0557 VACB-like ribonuclease II	exoribonuclease II	acetazolamide conferring resistance protein Zam identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358	Exoribonuclease II	RNAse R	Exoribonuclease II	exoribonuclease II	3'-5' exoribonuclease R	Exoribonuclease II PFAM: ribonuclease II; RNA binding S1 domain protein KEGG: cte:CT1000 ribonuclease II family protein	Exoribonuclease II	Exoribonuclease II	Exoribonuclease II	ribonuclease R identified by match to protein family HMM PF00773; match to protein family HMM PF08206	Exoribonuclease R	ribonuclease R (P56123) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein homolog) High confidence in function and specificity	Putative exoribonuclease R	
HELPY01220	Shikimate dehydrogenase	Shikimate 5-dehydrogenase	Shikimate dehydrogenase	Shikimate dehydrogenase	Shikimate dehydrogenase	CDS_ID OB1987 shikimate 5-dehydrogenase	Shikimate dehydrogenase	Shikimate dehydrogenase	Fusion: chorismate mutase and shikimate 5- dehydrogenase	Shikimate dehydrogenase	Shikimate dehydrogenase	Shikimate dehydrogenase	Lin1525 protein	Shikimate 5-dehydrogenase	Residues 10 to 281 of 281 are 98 pct identical to residues 1 to 272 of a 272 aa protein from Escherichia coli K12 ref: NP_417740.1 dehydroshikimate reductase	Shikimate dehydrogenase	Shikimate dehydrogenase	Shikimate dehydrogenase	Probable shikimate 5-dehydrogenase oxidoreductase protein	Shikimate dehydrogenase	shikimate 5-dehydrogenase	conserved gene shikimate-5-dehydrogenase	shikimate 5-dehydrogenase	identified by similarity to EGAD:45757; match to protein family HMM PF01488; match to protein family HMM TIGR00507 shikimate 5-dehydrogenase	shikimate 5-dehydrogenase	identified by similarity to SP:Q58484; match to protein family HMM PF01488; match to protein family HMM TIGR00507 shikimate 5-dehydrogenase	Shikimate dehydrogenase	Shikimate dehydrogenase	Shikimate dehydrogenase	
HELPY01221	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01222	Oligopeptide ABC transporter, permease protein	Putative transmembrane ABC transporter protein	Inner membrane ABC transporter permease protein yejB	peptide ABC transporter, permease protein	Peptide ABC transporter, permease protein	Dipeptide ABC transport system permease protein	Residues 1 to 364 of 364 are 99 pct identical to residues 1 to 364 of a 364 aa protein from Escherichia coli O157:H7 ref: NP_311097.1 putative transport system permease protein	Putative ABC transporter integral membrane subunit	Probable transmembrane abc transporter protein	identified by match to protein family HMM PF00528 oligopeptide/dipeptide uptake family ABC transporter, permease protein	Peptide ABC transporter	putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component	similar to Salmonella typhi CT18 putative binding-protein-dependent transporter putative binding-protein-dependent transporter	Oligopeptide ABC transporter	similar to BR0008, ABC transporter, permease protein ABC transporter, permease protein	Putative Peptide ABC transporter, ATP-binding protein	ABC oligo-dipeptide/nickel transporter, permease subunit	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative oligopeptide transport protein (ABC superfamily, membrane)	oligopeptide transport system permease protein OppB	Peptide ABC transporter, permease protein	Putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component	identified by match to protein family HMM PF00528 peptide ABC transporter, permease protein	Binding-protein-dependent transport systems inner membrane component	Binding-protein-dependent transport systems inner membrane component	Code: R; COG: COG4174 putative transport system permease protein	Binding-protein-dependent transport systems inner membrane component	Citation: PMID: 11341969 Biochim Biophys Acta. 2001 Jan 15;1499(3):222-31. ABC peptide transporter, inner membrane subunit	Code: R; COG: COG4174 putative transport system permease protein	binding-protein-dependent transport systems inner membrane component	
HELPY01223	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein	PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN	peptide ABC transporter, periplasmic peptide-binding protein	OppA	Probable substrate-binding periplasmic (Pbp) abc transporter protein	Peptide ABC transporter	Periplasmic binding component of ABC-type transport system	similar to BR0010, ABC transporter, periplasmic substrate-binding protein, hypothetical ABC transporter, periplasmic substrate-binding protein, hypothetical	Putative	oligopeptide-binding protein OppA	identified by match to protein family HMM PF00496 peptide ABC transporter, periplasmic peptide-binding protein	extracellular solute-binding protein, family 5	extracellular solute-binding protein, family 5	Bacterial extracellular solute-binding protein, family 5	extracellular solute-binding protein, family 5	putative solute-binding component of ABC transporter Similar, but truncated at the C-terminus, to Rhizobium sp. (strain NGR234). Hypothetical protein Y4WM precursor. Y4WM_RHISN (EMBL:RSAE104) (663) similarity:fasta; with=UniProt:Y4WM_RHISN (EMBL:RSAE104); Rhizobium sp. (strain NGR234).; Hypothetical protein Y4WM precursor.; length=663; id 67.833; 600 aa overlap; query 11-609; subject 16-614	Extracellular solute-binding protein, family 5 precursor	ABC transporter, periplasmic substrate-binding protein identified by match to protein family HMM PF00496	Oligopeptide ABC transporter, periplasmic peptide -binding pr	oligopeptide ABC transporter	extracellular solute-binding protein, family 5	extracellular solute-binding protein, family 5	Substrate binding protein of an ABC transporter complex periplasmic protein	Substrate binding protein of an ABC transporter complex periplasmic protein	extracellular solute-binding protein, family 5 PFAM: extracellular solute-binding protein, family 5 KEGG: bcn:Bcen_6015 extracellular solute-binding protein, family 5	ABC transporter, periplasmic substrate-binding protein identified by match to protein family HMM PF00496	ABC-type oligopeptide transport system, periplasmic binding protein	Extracellular solute-binding protein, family 5 precursor	ABC-type transporter, periplasmic component: PepT family	
HELPY01224	Tryptophanyl-tRNA synthetase	tryptophanyl-tRNA synthetase	tryptophan-tRNA synthetase	Putative tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	CDS_ID OB1208 tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	similar to U00022-28|AAA17323.1| percent identity: 59 in 336 aa putative tryptophanyl-tRNA synthetase	trytophanyl-tRNA synthetase	Trytophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	SC5G8.07, trpS2, tryptophanyl-tRNA synthetase, len: 339aa; strongly similar to many eg. SW:P00953 (SYW_BACST) tryptophanyl-tRNA synthetase from Bacillus stearothermophilus (328 aa) fasta scores; opt: 1195, z-score: 1347.2, E(): 0, 55.7% identity in 325 aa overlap.  Also similar to TR:Q9X8F8 (EMBL:AL049819) trpS, tryptophanyl-tRNA synthetase (fragment) from Streptomyces coelicolor (208 aa) fasta scores; opt: 618, z-score: 703.4, E(): 1e-31, 50.5% identity in 204 aa overlap.Contains Pfam match to entry PF00579 tRNA-synt_1b, tRNA synthetases class I (W and Y) and Prosite match to PS00178 Aminoacyl-transfer RNA synthetases class-I signature. tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Residues 1 to 334 of 334 are 99 pct identical to residues 1 to 334 of a 334 aa protein from Escherichia coli K12 ref: NP_417843.1 tryptophan tRNA synthetase	
HELPY01225	Biotin synthesis protein	Putative methyl transferase	biotin synthesis protein	Ubie_methyltran, ubiE/COQ5 methyltransferase family	biotin synthesis protein BioC, putative (Q9RX93) Trans-aconitate 2-methyltransferase (EC 2.1.1.144) High confidence in function and specificity	Biotin synthesis protein, BioC	Methyl transferase	Methyl transferase	Putative uncharacterized protein	Biotin synthesis protein	Biotin synthesis protein	Putative methyl transferase	Biotin synthesis protein BioC	Putative uncharacterized protein	Biotin biosynthesis protein BioC	
HELPY01226	Protein-export membrane protein secG	protein translocation protein	protein-export membrane protein (O25847) Protein-export membrane protein secG High confidence in function and specificity	preprotein translocase, SecG subunit TIGRFAM: preprotein translocase, SecG subunit PFAM: Preprotein translocase SecG subunit KEGG: gsu:GSU1627 preprotein translocase, SecG subunit	Protein translocase subunit secG	SecG protein	Preprotein translocase subunit SecG	Protein translocation protein	Preprotein translocase subunit SecG	Protein-export membrane protein SecG	
HELPY01227	Ribosome-recycling factor	ribosome releasing factor	ribosome recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	CDS_ID OB1589 ribosome recycling factor	Ribosome-recycling factor	similar to AP001515-158|BAB06143.1| percent identity: 49 in 185 aa putative ribosome recycling factor	Ribosome-recycling factor	ribosome releasing factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	
HELPY01228	Orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	orotate phosphoribosyltransferase	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367 orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	similar to BR0653, orotate phosphoribosyltransferase PyrE, orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	Similar to sp|P58858|PYRE_THETN sp|Q9A810|PYRE_CAUCR sp|Q8XL65|PYRE_CLOPE sp|Q8YG66|PYRE_BRUME; Ortholog to ERGA_CDS_08900 Orotate phosphoribosyltransferase	identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336 orotate phosphoribosyltransferase	COG0461 PyrE orotate phosphoribosyltransferase; go_process: 0009116 orotate phosphoribosyltransferase	COG0461 orotate phosphoribosyltransferase	Similar to Bacillus caldolyticus orotate phosphoribosyltransferase PyrE SWALL:PYRE_BACCL (SWALL:P46534) (206 aa) fasta scores: E(): 3.7e-36, 51% id in 200 aa, and to Bacteroides thetaiotaomicron orotate phosphoribosyltransferase BT3731 SWALL:AAO78836 (EMBL:AE016942) (212 aa) fasta scores: E(): 9.1e-77, 96.22% id in 212 aa, and to Listeria innocua orotate phosphoribosyltransferase PyrE or LIN1945 SWALL:PYRE_LISIN (SWALL:Q92AH7) (209 aa) fasta scores: E(): 3.4e-39, 53.39% id in 206 aa putative orotate phosphoribosyltransferase	orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	Similar to sp|P58858|PYRE_THETN sp|Q9A810|PYRE_CAUCR sp|Q8XL65|PYRE_CLOPE sp|Q8YG66|PYRE_BRUME; Ortholog to ERWE_CDS_09000 Orotate phosphoribosyltransferase	identified by similarity to SP:Q60016; match to protein family HMM TIGR01367 orotate phosphoribosyltransferase	orotate phosphoribosyltransferase	Orotate phosphoribosyl transferase, Thermus type	Phosphoribosyltransferase:Purine/pyrimidine phosphoribosyl transferase:Orotate phosphoribosyltransferase, Thermus type	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367 orotate phosphoribosyltransferase	Orotate phosphoribosyltransferase	orotate phosphoribosyltransferase identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367	
HELPY01229	Conserved hypothetical mitochondrial protein 4	Putative	RDD protein	conserved hypothetical protein similar to mitochondrial protein 4	RDD protein identified by match to protein family HMM PF06271	conserved hypothetical protein Function unclear	conserved hypothetical protein identified by match to protein family HMM PF06271	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative integral membrane protein	Putative uncharacterized protein	RDD protein	RDD protein	RDD protein	Conserved hypothetical mitochondrial protein-like protein 4	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY01231	NADH-quinone oxidoreductase subunit	NADH-quinone oxidoreductase subunit	NADH-quinone oxidoreductase subunit	NADH-quinone oxidoreductase subunit	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit A	SCD16A.21c, nuoA, NADH dehydrogenase subunit, len: 119 aa; similar to many e.g. TR:P95181 (EMBL:Z83867) NuoA, NADH dehydrogenase subunit from Mycobacterium tuberculosis (128 aa) fasta scores; opt: 405, z-score: 534.2, E(): 2e-22, (68.8% identity in 128 aa overlap). Contains Pfam match to entry PF00507 oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.  Contains possible hydrophobic membrane spanning regions NuoA, NADH dehydrogenase subunit	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit	identified by similarity to SP:O84969; match to protein family HMM PF00507 NADH-quinone oxidoreductase, A subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO7 subunit	NADH-quinone oxidoreductase subunit 7	NADH:ubiquinone oxidoreductase chain A	NADH-quinone oxidoreductase subunit	NADH oxidoreductase I	Similar to sp|Q9ZDH1|NUOA_RICPR sp|Q92ID5|NUOA_RICCN; Ortholog to ERGA_CDS_03100 NADH-quinone oxidoreductase chain A	COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) NADH dehydrogenase I chain A	Similar to Rhodobacter capsulatus NADH-quinone oxidoreductase chain A NuoA SWALL:NUOA_RHOCA (SWALL:O84969) (126 aa) fasta scores: E(): 1.6e-15, 44.54% id in 110 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain A BT4067 SWALL:AAO79172 (EMBL:AE016943) (116 aa) fasta scores: E(): 2.2e-42, 87.93% id in 116 aa, and to Anthoceros formosae NAD(P)H-quinone oxidoreductase NdhC SWALL:NU3C_ANTFO (SWALL:Q31792) (120 aa) fasta scores: E(): 4.1e-20, 47.74% id in 111 aa, and to Mesostigma viride NAD(P)H-quinone oxidoreductase ndhC SWALL:NU3C_MESVI (SWALL:Q9MUQ9) (120 aa) fasta scores: E(): 3.1e-18, 44.95% id in 109 aa NADH-quinone oxidoreductase chain A	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit A	NADH dehydrogenase I chain A (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase NQO7 subunit	Similar to sp|Q9ZDH1|NUOA_RICPR sp|Q92ID5|NUOA_RICCN; Ortholog to ERWE_CDS_03150 NADH-quinone oxidoreductase chain A	identified by similarity to SP:P33597; match to protein family HMM PF00507 NADH-quinone oxidoreductase, A subunit	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	putative NADH dehydrogenase chain A	
HELPY01232	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	NADH-QUINONE OXIDOREDUCTASE CHAIN B	NADH-quinone oxidoreductase subunit B	NADH-ubiquinone dehydrogenase chain B 1	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B 1	SCD16A.20c, nuoB, NADH dehydrogenase subunit, len: 184 aa; similar to many e.g. TR:P95180 (EMBL:Z83867) NuoB, hypothetical protein from Mycobacterium tuberculosis (184 aa) fasta scores; opt: 995, z-score: 1189.3, E(): 0, (78.8% identity in 184 aa overlap) and SW:NUOB_ECOLI, NADH dehydrogenase subunit NuoB from Escherichia coli (220 aa) fasta scores; opt: 607, z-score: 729.2, E(): 0, (53.4% identity in 148 aa overlap). Contains Pfam match to entry PF01058 oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd subunit, score 270.90, E-value 1.7e-77. NuoB, NADH dehydrogenase subunit	NADH-quinone oxidoreductase subunit B	NADH dehydrogenase I, B subunit	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	NADH dehydrogenase I chain B	conserved gene NADH dehydrogenase I, B subunit	NADH dehydrogenase I chain B	identified by similarity to SP:P29918; match to protein family HMM PF01058; match to protein family HMM TIGR01957 NADH dehydrogenase I, B subunit	NADH-quinone oxidoreductase subunit B	identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957 NADH-quinone oxidoreductase, B subunit	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	Mb3170, nuoB, len: 184 aa. Equivalent to Rv3146, len: 184 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 184 aa overlap). Probable nuoB, NADH dehydrogenase, chain B (EC 1.6.5.3), similar to others e.g. Q9XAQ5|NUOB from Streptomyces coelicolor (184 aa), FASTA scores: opt: 989, E(): 1.4e-56, (78.25% identity in 184 aa overlap); Q56218|NQO6_THETH|NQO6 from Thermus aquaticus (subsp. thermophilus) (181 aa), FASTA scores: opt: 720, E(): 2.6e-39, (64.45% identity in 152 aa overlap); Q9RU87|DR1505 from Deinococcus radiodurans (181 aa), FASTA scores: opt: 719, E(): 3e-39, (62.6% identity in 155 aa overlap); etc. BELONGS TO THE COMPLEX I 20 KDA SUBUNIT FAMILY. MAY CONTAIN AN IRON-SULFUR 4FE-4S CLUSTER.  TBparse score is 0.912. PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN B)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO6 subunit	NADH-quinone oxidoreductase subunit 6	NADH:ubiquinone oxidoreductase chain B	NADH-quinone oxidoreductase subunit B	similar to BR0803, NADH dehydrogenase I, B subunit NuoB, NADH dehydrogenase I, B subunit	NADH-quinone oxidoreductase subunit B	
HELPY01233	NADH-quinone oxidoreductase	Donor-ubiquinone reductase I	NADH oxidoreductase I	NADH-quinone oxidoreductase	NADH-ubiquinone oxidoreductase chain C	NADH dehydrogenase I chain C Function unclear	NADH-quinone oxidoreductase, C subunit identified by match to protein family HMM PF00329; match to protein family HMM TIGR01961	NADH-quinone oxidoreductase	NADH-quinone oxidoreductase	NADH-quinone oxidoreductase, C subunit	NADH-quinone oxidoreductase	NADH-quinone oxidoreductase	NADH-quinone oxidoreductase	NADH dehydrogenase subunit C	NADH-ubiquinone oxidoreductase chain C	NADH-quinone oxidoreductase	NADH (Or F420H2) dehydrogenase, subunit C	NADH-quinone oxidoreductase	NADH-quinone oxidoreductase	
HELPY01234	NADH-quinone oxidoreductase subunit D	NADH:ubiquinone oxidoreductase subunit 7	NADH dehydrogenase I, D subunit	NADH-QUINONE OXIDOREDUCTASE CHAIN D	NADH-quinone oxidoreductase subunit D	NADH-ubiquinone dehydrogenase chain D 1	NADH-quinone oxidoreductase subunit D	NADH-quinone oxidoreductase subunit D	NADH-quinone oxidoreductase subunit D	NADH-quinone oxidoreductase subunit D	NADH-quinone oxidoreductase subunit D	membrane bound hydrogenase, NiFe-hydrogenase large subunit 2	Probable nadh dehydrogenaseI(Chain d) oxidoreductase protein	NADH dehydrogenase I chain D	conserved gene NADH dehydrogenase I, D subunit	NADH dehydrogenase I chain D	NADH dehydrogenase subunit 7	identified by similarity to SP:O07310; match to protein family HMM PF00346; match to protein family HMM TIGR01962 NADH dehydrogenase I, D subunit	NADH-quinone oxidoreductase subunit D	NADH-quinone oxidoreductase subunit D	NAD(P)H-quinone oxidoreductase subunit H	identified by match to protein family HMM PF00346 NADH-quinone oxidoreductase, D subunit	NADH-ubiquinone oxidoreductase chain D protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO4 subunit	NADH-quinone oxidoreductase subunit 4	NADH:ubiquinone oxidoreductase chain D	NADH-quinone oxidoreductase subunit D	similar to BR0805, NADH dehydrogenase I, D subunit NuoD, NADH dehydrogenase I, D subunit	NADH-quinone oxidoreductase subunit D	
HELPY01235	Putative uncharacterized protein	Putative uncharacterized protein	Putative NADH oxidoreductase I	Putative NADH oxidoreductase I	NADH-ubiquinone oxidoreductase chain E	NADH dehydrogenase I chain E hypothetical protein	Putative uncharacterized protein	NADH dehydrogenase I chain E	Conserved domain protein	Conserved domain protein	Conserved domain protein	NADH-ubiquinone oxidoreductase chain E	NADH-ubiquinone oxidoreductase chain E	Putative NADH-quinone oxidoreductase, E subunit	NADH-ubiquinone oxidoreductase chain E	NADH-ubiquinone oxidoreductase, chain E	
HELPY01236	Putative uncharacterized protein	Putative NADH oxidoreductase I	NADH-ubiquinone oxidoreductase chain F	NADH dehydrogenase I chain F hypothetical protein	Putative uncharacterized protein	NADH-ubiquinone oxidoreductase chain F	NADH-ubiquinone oxidoreductase chain F	NADH-ubiquinone oxidoreductase chain F	NADH-ubiquinone oxidoreductase, chain F	
HELPY01237	NADH-ubiquinone oxidoreductase, NQO3 subunit	Donor-ubiquinone reductase I	NADH oxidoreductase I	NADH-ubiquinone oxidoreductase chain G	NADH dehydrogenase I chain G High confidence in function and specificity	NADH-quinone oxidoreductase, G subunit identified by match to protein family HMM PF00037; match to protein family HMM PF00111	NADH-quinone oxidoreductase, G subunit	NADH-quinone oxidoreductase, G subunit	Elongation factor Tu	Ferredoxin	NADH dehydrogenase gamma subunit	NADH dehydrogenase subunit G	NADH-ubiquinone oxidoreductase chain G	NADH-quinone oxidoreductase, G subunit	NADH-ubiquinone oxidoreductase chain G	NADH-ubiquinone oxidoreductase, NQO3 subunit	
HELPY01238	NADH-quinone oxidoreductase subunit H	NADH:ubiquinone oxidoreductase subunit 1 (chain H)	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH dehydrogenase subunit 1	identified by similarity to SP:P42032; match to protein family HMM PF00146 NADH dehydrogenase I, H subunit	NAD(P)H-quinone oxidoreductase subunit 1	identified by match to protein family HMM PF00146 NADH-quinone oxidoreductase, H subunit	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	Mb3176, nuoH, len: 410 aa. Equivalent to Rv3152, len: 410 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 410 aa overlap). Probable nuoH, integral membrane NADH dehydrogenase I, chain H (EC 1.6.5.3), similar to others e.g. Q9XAR1 Q9XAR1|NUOH from Streptomyces coelicolor (467 aa), FASTA scores: opt: 1630, E(): 3.4e-90, (58.35% identity in 413 aa overlap); Q9RU94|DR1498 from Deinococcus radiodurans (397 aa), FASTA scores: opt: 1081, E(): 2e-57, (45.5% identity in 391 aa overlap); Q9ZCF7|NUOH_RICPR|RP796 from Rickettsia prowazekii (339 aa), FASTA scores: opt: 976, E(): 3.4e-51, (46.2% identity in 329 aa overlap); etc. Contains respiratory-chain NADH dehydrogenase subunit 1 signature 2 (PS00668). Some similarity to MTCY251.02 (FASTA score: E(): 1.2e-07). BELONGS TO THE COMPLEX I SUBUNIT 1 FAMILY. PROBABLE NADH DEHYDROGENASE I (CHAIN H) NUOH (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN H)	NADH-quinone oxidoreductase subunit 8	IPR001694: Respiratory-chain NADH dehydrogenase, subunit 1 NADH dehydrogenase I chain H	similar to Salmonella typhi CT18 NADH dehydrogenase I chain H NADH dehydrogenase I chain H	NADH-quinone oxidoreductase subunit H	NADH oxidoreductase I	putative respiratory-chain NADH dehydrogenase subunit	NADH-plastoquinone oxidoreductase chain 1	COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) similar to EAA26066.1 NADH dehydrogenase chain H	Similar to Streptomyces coelicolor nuoh, NADH dehydrogenase subunit NuoH or sco4569 or scd16a.14C SWALL:Q9XAR1 (EMBL:AL939120) (467 aa) fasta scores: E(): 1.6e-46, 37.5% id in 336 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain H BT4064 SWALL:AAO79169 (EMBL:AE016943) (358 aa) fasta scores: E(): 2.2e-135, 88.26% id in 358 aa, and to Heliobacillus mobilis NADH-quinone oxidoreductase chain H SWALL:Q8GDW1 (EMBL:AY142861) (337 aa) fasta scores: E(): 3.6e-62, 46.08% id in 332 aa putative NADH dehydrogenase subunit H	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-ubiquinone oxidoreductase chain H	NADH dehydrogenase I, subunit H (NADH-quinone oxidoreductase, chain H)	ortholog to Escherichia coli bnum: b2282; MultiFun: Cell structure 6.1; Metabolism 1.3.6, 1.3.7, 1.4.1; Transport 4.3.D.1, 4.S.130 NADH dehydrogenase I chain H	identified by similarity to SP:P33603 proton-translocating NADH-quinone oxidoreductase, H subunit	
HELPY01239	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase subunit I	Mb3177, nuoI, len: 211 aa. Equivalent to Rv3153, len: 211 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 211 aa overlap). Probable nuoI, NADH dehydrogenase I, chain I (EC 1.6.5.3), similar to others e.g. Q9XAR2|NUOI from Streptomyces coelicolor (211 aa), FASTA scores: opt: 825, E(): 9.3e-44, (70.1% identity in 164 aa overlap); Q56224|NQO9_THETH from Thermus aquaticus (subsp. thermophilus) (182 aa), FASTA scores: opt: 543, E(): 1.8e-26, (50.9% identity in 163 aa overlap); Q9RU95|DR1497 from Deinococcus radiodurans (178 aa), FASTA scores: opt: 527, E(): 1.7e-25, (48.75% identity in 162 aa overlap); etc. Contains two 4Fe-4S ferredoxins, iron-sulfur binding region signatures (PS00198). BELONGS TO THE COMPLEX I 23 KDA SUBUNIT FAMILY. THE IRON-SULFUR CENTERS ARE SIMILAR TO THOSE OF 'BACTERIAL-TYPE' 4FE-4S FERREDOXINS. COFACTOR: BINDS TWO 4FE-4S CLUSTERS. PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN I)	NADH-quinone oxidoreductase subunit I	NADH oxidoreductase I	NADH-plastoquinone oxidoreductase, I subunit	NADH-quinone oxidoreductase subunit I	NADH-ubiquinone oxidoreductase chain I	NADH dehydrogenase I chain I (Q42599) NADH-ubiquinone oxidoreductase 23 kDa subunit mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I-28.5KD) (CI-28.5KD) High confidence in function and specificity	NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase chain I) Mapped to H37Rv Rv3153	Probable NADH dehydrogenase I (Chain I) nuoI	NADH-quinone oxidoreductase, I subunit identified by match to protein family HMM PF00037; match to protein family HMM TIGR01971	Putative NADH Dehydrogenase subunit	NADH dehydrogenase (quinone) Evidence 2b : Function of strongly homologous gene; Product type e : enzyme	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase, chain I	NADH-quinone oxidoreductase, chain I	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase, I subunit	jgi|Helro1|186088	NADH-quinone oxidoreductase subunit i	NADH-quinone oxidoreductase subunit i	4Fe-4S ferredoxin iron-sulfur binding domain protein precursor	NADH-quinone oxidoreductase, chain I	NADH-quinone oxidoreductase subunit i	NADH dehydrogenase subunit I	NADH-ubiquinone oxidoreductase chain I	NADH-quinone oxidoreductase, I subunit	NADH-quinone oxidoreductase subunit I	
HELPY01240	NADH-ubiquinone oxidoreductase, NQO10 subunit	Putative NADH dehydrogenase I chain J	NADH-QUINONE OXIDOREDUCTASE CHAIN J	Putative NADH-ubiquinone oxidoreductase chain J	NADH-ubiquinone dehydrogenase chain 10	SCD39.04, nuoJ2, NADH dehydrogenase subunit, len: 197 aa; similar to SW:NU6C_SYNY3 (EMBL:X62517) Synechocystis sp. NADH-plastoquinone oxidoreductase chain 6 (EC 1.6.5.3) NdhG, 198 aa; fasta scores: opt: 311 z-score: 383.0 E(): 7.2e-14; 35.7% identity in 185 aa overlap and to TR:Q9XAR3 (EMBL:AL078618) Streptomyces coelicolor SCD16A.12c NuoJ, NADH dehydrogenase subunit, 285 aa; fasta scores: opt: 278 z-score: 288.5 E(): 2e-10; 33.1% identity in 181 aa overlap. Contains Pfam match to entry PF00499 oxidored_q3, NADH-ubiquinone/plastoquinone oxidoreductase chain 6 and possible hydrophobic membrane spanning regions NADH dehydrogenase subunit NuoJ2	Probable transmembrane nadh dehydrogenaseI(Chain j) oxidoreductase protein	NADH dehydrogenase subunit 6	NADH-ubiquinone oxidoreductase, NQO10 subunit	NAD(P)H-quinone oxidoreductase chain 6	identified by similarity to SP:P33605; match to protein family HMM PF00499 NADH-quinone oxidoreductase, J subunit	NuoJ	NADH-ubiquinone oxidoreductase chain J protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO10 subunit	Donor-ubiquinone reductase I	similar to BR0811, NADH dehydrogenase I, J subunit NuoJ, NADH dehydrogenase I, J subunit	NADH-ubiquinone oxidoreductase NQO10 subunit	NADH oxidoreductase I	COG0839 NuoJ NADH:ubiquinone oxidoreductase subunit 6 (chain J) similar to NP_771548.1 NADH dehydrogenase chain J	Similar to Q9K1B2 NADH dehydrogenase I, J subunit from Neisseria meningitidis (223 aa). FASTA: opt: 387 Z-score: 452.6 E(): 2.6e-17 Smith-Waterman score: 387; 38.191 identity in 199 aa overlap NADH dehydrogenase I, J subunit	NADH-ubiquinone oxidoreductase NQO10 subunit	NADH Dehydrogenase I Chain J	NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain J)	ortholog to Escherichia coli bnum: b2280; MultiFun: Cell structure 6.1; Metabolism 1.3.6, 1.3.7, 1.4.1; Transport 4.3.D.1, 4.S.130 NADH dehydrogenase I chain J	NADH dehydrogenase (quinone)	Putative NADH dehydrogenase (Complex I) subunit (Chain 6) precursor	Photosynthetic reaction centre protein:NADH-ubiquinone/plastoquinone oxidoreductase, chain 6	identified by similarity to SP:P26523; match to protein family HMM PF00499 proton-translocating NADH-quinone oxidoreductase, J subunit	NADH dehydrogenase I chain J	
HELPY01241	NADH-quinone oxidoreductase subunit K	NADH:ubiquinone oxidoreductase subunit 4L (chain K)	NADH-quinone oxidoreductase subunit K	NADH dehydrogenase I, K subunit	NADH-quinone oxidoreductase subunit K	NADH-QUINONE OXIDOREDUCTASE CHAIN K	NADH-quinone oxidoreductase subunit K	NADH-ubiquinone dehydrogenase chain 11	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K 1	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NADH dehydrogenase I, K subunit	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase chain K	conserved gene NADH dehydrogenase I, K subunit	NADH-quinone oxidoreductase chain K	NADH dehydrogenase subunit 4L	identified by similarity to SP:P50940; match to protein family HMM PF00420 NADH dehydrogenase I, K subunit	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NAD(P)H-quinone oxidoreductase chain 4L	identified by similarity to SP:P50940; match to protein family HMM PF00420 NADH-quinone oxidoreductase, K subunit	NADH-quinone oxidoreductase subunit K	NADH-ubiquinone oxidoreductase chain K protein	NADH-quinone oxidoreductase subunit K	Mb3179, nuoK, len: 99 aa. Equivalent to Rv3155, len: 99 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 99 aa overlap). Probable nuoK, integral membrane NADH dehydrogenase I, chain K (EC 1.6.5.3), similar to others e.g. Q9XAR4|NUOK from Streptomyces coelicolor (99 aa), FASTA scores: opt: 509, E(): 2.7e-31, (78.55% identity in 98 aa overlap); Q56226|NQOB_THETH|NQO11 from Thermus aquaticus (subsp.  thermophilus) (95 aa), BLAST scores: initn: 298, init1: 180, bits: 85.7, FASTA scores: opt: 313, E(): 9.4e-17, (53.7% identity in 95 aa overlap); Q9RU97|DR1495 from Deinococcus radiodurans (103 aa), FASTA scores: opt: 309, E(): 2e-16, (52.0% identity in 100 aa overlap); etc. But also similarity with NADH-PLASTOQUINONE OXIDOREDUCTASES CHAIN 4L e.g. Q9MUL4|NULC_MESVI|NDHE from Mesostigma viride (EC 1.6.5.3) (CATALYTIC ACTIVITY: NADH + PLASTOQUINONE = NAD(+) + PLASTOQUINOL) (101 aa), FASTA scores: opt: 280, E(): 2.8e-14, (40.6% identity in 101 aa overlap); and P06261|NULC_TOBAC|NDHE|NDH4L from Nicotiana tabacum (Common tobacco) (101 aa), FASTA scores: opt: 259, E(): 1e-12, (43.0% identity in 93 aa overlap). SIMILAR TO POLYPEPTIDE 4L OF THE NADH-UBIQUINOL OXIDOREDUCTASE OF CHLOROPLASTS OR MITOCHONDRIA. PROBABLE NADH DEHYDROGENASE I (CHAIN K) NUOK (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN K)	
HELPY01242	NADH-ubiquinone oxidoreductase, NQO12 subunit	NADH:ubiquinone oxidoreductase subunit 5 (chain L)	Putative NADH dehydrogenase I chain L	NADH dehydrogenase I, L subunit	NADH dehydrogenase I chain L	NADH-QUINONE OXIDOREDUCTASE CHAIN L	NADH-ubiquinone dehydrogenase chain 12	NADH-quinone oxidoreductase subunit L	SCD16A.10c, nuoL, NADH dehydrogenase subunit, len: 654 aa; similar to many e.g. TR:O86350 (EMBL:AL021646) NuoL, NADH dehydrogenase subunit from Mycobacterium tuberculosis (633 aa) fasta scores; opt: 2074, z-score: 2200.6, E(): 0, (61.1% identity in 648 aa overlap) and SW:NUOL_ECOLI, NADH dehydrogenase subunit NuoL from Escherichia coli (613 aa) fasta scores; opt: 1178, z-score: 1251.2, E(): 0, (38.2% identity in 659 aa overlap). Contains Pfam matches to entries PF00361 oxidored_q1, NADH-Ubiquinone/plastoquinone (complex I), various chains and Pfam match to entry PF00662 oxidored_q1_N, NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus. Contains possible membrane spanning hydrophobic regions. NuoL, NADH dehydrogenase subunit	NADH dehydrogenase I, L subunit	Probable nuoL; transmembrane NADH dehydrogenase I (Chain L) oxidoreductase protein	Probable transmembrane nadh dehydrogenaseI(Chain l) oxidoreductase protein	identified by similarity to GP:4001725; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR00940 Na+/H+ antiporter, MnhA component	NADH-ubiquinone oxidoreductase, chain L	NADH-ubiquinone oxidoreductase, NQO12 subunit	Na+/H+ antiporter subunit	identified by match to protein family HMM PF00361; match to protein family HMM PF00662 NADH-quinone oxidoreductase, L subunit	NuoL	NADH-ubiquinone oxidoreductase chain L protein	NADH-quinone oxidoreductase subunit L	Mb3180, nuoL, len: 633 aa. Equivalent to Rv3156, len: 633 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 633 aa overlap). Probable nuoL, integral membrane NADH dehydrogenase I, chain L (EC 1.6.5.3), similar to others e.g. Q9XAR5|NUOL_STRCO from Streptomyces coelicolor (654 aa), FASTA scores: opt: 2074, E(): 1.1e-111, (61.1% identity in 648 aa overlap); Q56227|NQOC_THETH|NQO12 from Thermus aquaticus (subsp.  thermophilus) (606 aa), FASTA scores: opt: 1420, E(): 3.8e-74, (43.35% identity in 630 aa overlap); Q9ZJV6|NUOL|JHP1192 from Helicobacter pylori J99 (Campylobacter pylori J99) (612 aa), FASTA scores: opt: 1279, E(): 4.7e-66, (41.65% identity in 516 aa overlap); etc. Also similar to MTCY251.04 (FASTA score: E(): 1.3e-11) and MTCY03A2.01c (FASTA score: E(): 2.3e-10).  SIMILAR TO POLYPEPTIDE 5 OF THE NADH-UBIQUINOL OXIDOREDUCTASE OF CHLOROPLASTS OR MITOCHONDRIAL. PROBABLE NADH DEHYDROGENASE I (CHAIN L) NUOL (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN L)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO12 subunit	NADH-quinone oxidoreductase subunit 12	NADH:ubiquinone oxidoreductase chain L	similar to BR0813, NADH dehydrogenase I, L subunit NuoL, NADH dehydrogenase I, L subunit	NADH-ubiquinone oxidoreductase NQO12 subunit	NADH dehydrogenase I, L subunit	NADH oxidoreductase I	NADH dehydrogenase I chain L	
HELPY01243	NADH-ubiquinone oxidoreductase, NQO13 subunit	Putative NADH dehydrogenase I chain M	NADH dehydrogenase I, M subunit	NADH dehydrogenase I chain M	NADH-QUINONE OXIDOREDUCTASE CHAIN M	NADH-ubiquinone dehydrogenase chain 13	NADH-quinone oxidoreductase chain M	NADH-ubiquinone dehydrogenase chain M	SCD16A.09c, nuoM, NADH dehydrogenase subunit, len: 523 aa; similar to many e.g. TR:O53307 (EMBL:AL021646) NuoM, NADH dehydrogenase subunit from Mycobacterium tuberculosis (553 aa) fasta scores; opt: 1621, z-score: 1842.0, E(): 0, (56.6% identity in 541 aa overlap) and SW:NUOM_ECOLI, NADH dehydrogenase subunit NuoM from Escherichia coli (509 aa) fasta scores; opt: 970, z-score: 1103.8, E(): 0, (35.1% identity in 513 aa overlap).  Contains Pfam match to entry PF00361 oxidored_q1, NADH-Ubiquinone/plastoquinone (complex I), various chains.  Contains possible membrane spanning hydrophobic regions. NuoM, NADH dehydrogenase subunit	NADH-quinone oxidoreductase subunit M	NADH dehydrogenase I, M subunit	NADH dehydrogenase I M subunit	Possible nuoM; transmembrane NADH dehydrogenase I (Chain M) oxidoreductase protein	identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972 NADH dehydrogenase I, M subunit	NADH-ubiquinone oxidoreductase, chain M	NADH-ubiquinone oxidoreductase, NQO13 subunit	identified by similarity to SP:P50974; match to protein family HMM PF00361 NADH-quinone oxidoreductase, M subunit	NADH-ubiquinone oxidoreductase chain M protein	Mb3181, nuoM, len: 553 aa. Equivalent to Rv3157, len: 553 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 553 aa overlap). Probable nuoM, integral membrane NADH dehydrogenase I, chain M (EC 1.6.5.3), similar to others e.g. Q9XAR6|NUOM from Streptomyces coelicolor (523 aa), FASTA scores: opt: 1621, E(): 4.2e-89, (56.55% identity in 541 aa overlap); P50974|NUOM_RHOCA|NUOM from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (512 aa), FASTA scores: opt: 996, E(): 6.5e-52, (38.2% identity in 521 aa overlap); P29925|NQOD_PARDE|NQO13 from Paracoccus denitrificans (513 aa), FASTA scores: opt: 987, E(): 2.2e-51, (37.05% identity in 540 aa overlap); etc. Also similar to MTCY251.04 (FASTA score: E(): 3.3e-16) and MTCY03A2.02c (FASTA score: E(): 9.6e-13). SIMILAR TO POLYPEPTIDE 4 OF THE NADH-UBIQUINOL OXIDOREDUCTASE OF CHLOROPLASTS OR MITOCHONDRIAL. PROBABLE NADH DEHYDROGENASE I (CHAIN M) NUOK (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN M)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO13 subunit	NADH-quinone oxidoreductase subunit 13	NADH:ubiquinone oxidoreductase chain M	Donor-ubiquinone reductase I	similar to BR0814, NADH dehydrogenase I, M subunit NuoM, NADH dehydrogenase I, M subunit	NADH-ubiquinone oxidoreductase NQO13 subunit	NADH dehydrogenase I, M subunit	NADH oxidoreductase I	NADH dehydrogenase chain M	Similar to sp|Q9ZCG0|NUOM_RICPR sp|Q92G96|NUOM_RICCN; Ortholog to ERGA_CDS_04890 NADH-quinone oxidoreductase chain M	
HELPY01244	NADH-ubiquinone oxidoreductase, NQO14 subunit	NADH:ubiquinone oxidoreductase subunit 2 (chain N)	Putative NADH dehydrogenase I chain N	NADH dehydrogenase I, N subunit	NADH-quinone oxidoreductase subunit N	NADH-QUINONE OXIDOREDUCTASE CHAIN N	NADH-quinone oxidoreductase subunit N	NADH-quinone oxidoreductase subunit N	NADH-ubiquinone dehydrogenase chain 14	NADH-quinone oxidoreductase subunit N	NADH-ubiquinone dehydrogenase chain N	SCD16A.08c, nuoN, NADH dehydrogenase subunit, len: 552 aa; similar to many e.g. TR:O53308 (EMBL:AL021646) NuoN, NADH dehydrogenase subunit from Mycobacterium tuberculosis (531 aa) fasta scores; opt: 1493, z-score: 1618.7, E(): 0, (56.7% identity in 543 aa overlap) and SW:NUON_ECOLI, NADH dehydrogenase subunit NuoN from Escherichia coli (425 aa) fasta scores; opt: 685, z-score: 746.4, E(): 0, (39.8% identity in 389 aa overlap).  Contains Pfam match to entry PF00361 oxidored_q1, NADH-Ubiquinone/plastoquinone (complex I), various chains.  Contains possible membrane spanning hydrophobic regions. NuoN, NADH dehydrogenase subunit	NADH-quinone oxidoreductase subunit N	NADH dehydrogenase I, N subunit	NADH dehydrogenase I N subunit	NADH dehydrogenase subunit 2	identified by similarity to SP:P50973; match to protein family HMM PF00361; match to protein family HMM TIGR01770 NADH dehydrogenase I, N subunit	NADH-ubiquinone oxidoreductase, chain N	NADH-ubiquinone oxidoreductase, NQO14 subunit	NAD(P)H-quinone oxidoreductase subunit 2	identified by similarity to SP:P33608; match to protein family HMM PF00361 NADH-quinone oxidoreductase, N subunit	NuoN	NADH-ubiquinone oxidoreductase chain N protein	NADH-quinone oxidoreductase subunit N	Mb3182, nuoN, len: 531 aa. Equivalent to Rv3158, len: 531 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 531 aa overlap). Probable nuoN, integral membrane NADH dehydrogenase I, chain N (EC 1.6.5.3), similar to others e.g. Q9XAR7|SC10A7.08c from Streptomyces coelicolor (552 aa), FASTA scores: opt: 1493, E(): 1.1e-81, (56.7% identity in 543 aa overlap); Q9PGI2|XF0318 from Xylella fastidiosa (485 aa), FASTA scores: opt: 942, E(): 7.4e-49, (39.6% identity in 379 aa overlap); CAB51628|NUON2 from Rhizobium meliloti (Sinorhizobium meliloti) (479 aa), FASTA scores: opt: 934, E(): 2.2e-48, (35.5% identity in 479 aa overlap); etc. But also similarity with NADH-PLASTOQUINONE OXIDOREDUCTASES CHAIN 4L (EC 1.6.5.3) (CATALYTIC ACTIVITY: NADH + PLASTOQUINONE = NAD(+) + PLASTOQUINOL) e.g.  P29801|NU2C_SYNP7|NDHB from Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) (521 aa), FASTA scores: opt: 921, E(): 1.4e-47, (40.25% identity in 395 aa overlap).  BELONGS TO THE COMPLEX I SUBUNIT 2 FAMILY. PROBABLE NADH DEHYDROGENASE I (CHAIN N) NUON (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN N)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO14 subunit	NADH-quinone oxidoreductase subunit 14	NADH:ubiquinone oxidoreductase chain N	similar to Salmonella typhi CT18 NADH dehydrogenase I chain N NADH dehydrogenase I chain N	
HELPY01245	Paralysed flagella protein	Paralysed flagella protein PflA	FLAGELLAR FUNCTIONAL PROTEIN	TPR repeat	paralysed flagella protein	tetratricopeptide repeat domain protein	paralysed flagella protein flagellar functional protein hypothetical protein	paralyzed flagella protein PflA	Paralyzed flagella protein PflA	Paralyzed flagella protein PflA	Tetratricopeptide repeat domain protein	Tetratricopeptide repeat domain protein	Tetratricopeptide repeat domain protein	Paralysed flagella protein	Paralysed flagella protein	Tetratricopeptide repeat domain protein	Paralysed flagella protein PflA	Paralysed flagella protein	Putative paralysed flagella protein PflA; putative signal peptide	
HELPY01246	Phosphomannomutase	Phosphoglucomutase/phosphomannomutase family protein	Phosphomannomutase	Putative phosphomannomutase or phosphoglucomutase protein	phosphomannomutase	conserved gene phosphomannomutase	phosphomannomutase	identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 phosphomannomutase/phosphoglucomutase	Phosphomannomutase	identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 phosphomannomutase/phosphoglucomutase	Phosphohexosemutase	Phosphomannomutase	Phosphohexosemutase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme phosphomannomutase	Phosphoglucomutase/phosphomannomutase family protein	Phosphomannomutase/phosphoglucomutase	putative phosphoglucomutase	phosphomannomutase	phosphomannomutase	identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 phosphomannomutase/phosphoglucomutase	Phosphomannomutase	Phosphomannomutase	Best Blastp Hit: sp|P40390|PGMU_NEIGO phosphoglucomutase (glucose phosphomutase) (PGM) >gi|1073189|pir||A53614 phosphoglucomutase (EC 5.4.2.2) - Neisseria gonorrhoeae (strain 1291) >gi|414527|gb|AAA20588.1| (U02489) phosphoglucomutase [Neisseria gonorrhoeae] >gi|452116|gb|AAA20399.1| (L23426) phosphoglucomutase [Neisseria gonorrhoeae] COG1109 Phosphomannomutase; Pgm phosphoglucomutase	Phosphomannomutase	Phosphomannomutase	phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	
HELPY01247	Putative uncharacterized protein	
HELPY01248	Tryptophan synthase alpha chain	tryptophan synthasealpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	CDS_ID OB0521 tryptophan synthase alpha chain	similar to AX064161-1|CAC25321.1| percent identity: 87 in 279 aa tryptophan synthase alpha chain	tryptophan synthase alpha subunit	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	SC4G6.05c, trpA, tryptophan synthase alpha subunit, len: 271aa; previously sequenced therefore identical (except for A>G conflict at first base) to TR:O68816 (EMBL:AF054585). Also similar to many others eg.  SW:TRPA_THETH tryptophan synthase alpha chain from Thermus thermophilus (271 aa) fasta scores; opt: 711, z-score: 781.5, E(): 0, (47.6% identity in 248 aa overlap).  Contains Pfam match to entry PF00290 trp_syntA, Tryptophan synthase alpha chain and Prosite match to PS00402 Binding-protein-dependent transport systems inner membrane comp sign. tryptophan synthase alpha subunit	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Residues 1 to 268 of 268 are 100 pct identical to residues 1 to 268 of a 268 aa protein from Escherichia coli K12 ref: NP_415776.1 tryptophan synthase, alpha protein	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	tryptophan synthase, alpha subunit	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	
HELPY01249	Tryptophan synthase beta chain	tryptophan synthasebeta chain	Putative tryptophan synthase beta subunit	Tryptophan synthase, beta subunit	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain 1	Tryptophan synthase beta chain TrpB2	Tryptophan synthase beta chain	CDS_ID OB0522 tryptophan synthase beta chain	similar to X04960-6|CAA28627.1| percent identity: 84 in 415 aa tryptophan synthase beta chain	tryptophan synthase beta subunit	N-(5'-phosphoribosyl)anthranilate isomerase	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	SC4G6.06c, trpB, tryptophan synthase beta subunit, len: 427 aa; previously sequenced therefore identical to TR:O05625 (EMBL:AF054585). Also similar to SW:TRPB_CAUCR tryptophan synthase beta chain from Caulobacter crescentus (406 aa) fasta scores; opt: 1660, z-score: 1848.0, E(): 0, (61.2% identity in 397 aa overlap). Contains Pfam match to entry PF00247 trp_syntB, Tryptophan synthases, beta chain and Prosite match to PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. tryptophan synthase beta subunit	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Residues 1 to 397 of 397 are 100 pct identical to residues 1 to 397 of a 397 aa protein from Escherichia coli K12 ref: NP_415777.1 tryptophan synthase, beta protein	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	tryptophan synthase, beta subunit	
HELPY01250	Tryptophan biosynthesis protein trpCF	Tryptophan biosynthesis protein TrpCF	Tryptophan biosynthesis protein trpCF	similar to AX064149-1|CAC25315.1| percent identity: 81 in 474 aa indole-3-glycerol phosphate synthase/N-(5'-phospho-ribosyl)anthranilate isomerase	Tryptophan biosynthesis protein trpCF	Phosphoribosylanthranilate isomerase	Residues 2 to 453 of 453 are 99 pct identical to residues 1 to 452 of a 452 aa protein from Escherichia coli gb: AAA65144.1 anthranilate isomerase	Tryptophan biosynthesis protein trpCF	Tryptophan biosynthesis protein TrpCF	Indole-3-glycerol phosphate synthase	bifunctional; IPR001468: Indole-3-glycerol phosphate synthase N-(5-phosphoribosyl)anthranilate isomerase/indole-3-glycerolphosphate synthetase	similar to Salmonella typhi CT18 indole-3-glycerol phosphate synthase indole-3-glycerol phosphate synthase	Phosphoribosylanthranilate isomerase	Tryptophan biosynthesis protein trpCF	Tryptophan biosynthesis protein TrpCF	N-(5'-phosphoribosyl)anthranilate isomerase indole-3-glycerol phosphate synthase	IGPS; PRAI; Similar to: HI1389.1, TRPC_HAEIN tryptophan biosynthesis protein trpCF	Indole-3-glycerol phosphate synthase TrpC protein	Similar to TRPC_ECOLI (P00909) Tryptophan biosynthesis protein TrpCF from E. coli (452 aa). FASTA: opt: 1577 Z-score: 1915.5 E(): 8.4e-99 Smith-Waterman score: 1577; 55.482 identity in 456 aa overlap Bifunctional protein of tryptophan biosynthesis tryptophan biosynthesis protein	Anthranilate isomerase	Tryptophan biosynthesis protein trpCF	Tryptophan biosynthesis protein trpCF	identified by similarity to SP:P00910; match to protein family HMM PF00218; match to protein family HMM PF00697 indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	bifunctional; ortholog to Escherichia coli bnum: b1262; MultiFun: Metabolism 1.5.1.15; N-(5-phosphoribosyl)anthranilate isomerase indole-3-glycerolphosphate synthetase	indole-3-glycerolphosphate synthetase; Code: E; COG: COG0134 N-(5-phosphoribosyl)anthranilate isomerase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 10653631; Product type e : enzyme bifunctional: indole-3-glycerolphosphate synthetase (N-terminal); N-(5-phosphoribosyl)anthranilate isomerase (C-terminal)	Code: E; COG: COG0134 N-(5-phosphoribosyl)anthranilate isomerase/indole-3-glycerolphosphate synthetase	anthranilate isomerase TrpCF	Code: E; COG: COG0134 N-(5-phosphoribosyl)anthranilate isomerase/indole-3-glycerolphosphate synthetase	
HELPY01251	Anthranilate phosphoribosyltransferase	anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	CDS_ID OB0525 anthranilate phosphoribosyltransferase	similar to U11545-1|AAA19612.1| percent identity: 76 in 340 aa anthranilate phosphoribosyltransferase	anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	SCE8.05c, trpD2, anthranilate phosphoribotransferase, len: 335 aa; similar to many e.g.  SW:TRPD_AZOBR TrpD, anthranilate phosphoribotransferase from Azospirillum brasilense (355 aa) fasta scores; opt: 924, z-score: 1056.6, E(): 0, (49.5% identity in 315 aa overlap). Contains Pfam match to entry PF00591 Glycos_transf_3, glycosyl transferase family, score 223.70, E-value 2.8e-63. probable anthranilate phosphoribotransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	Anthranilate phosphoribosyltransferase	anthranilate phosphoribosyltransferase	conserved gene anthranilate phosphoribosyltransferase	anthranilate phosphoribosyltransferase	
HELPY01252	Anthranilate synthase component II	Anthranilate synthase component II	Anthranilate synthase component 2	Anthranilate/para-aminobenzoate synthase component II	Anthranilate synthase component II	Anthranilate synthase component II	Anthranilate synthase component II	Anthranilate synthase component II	Anthranilate synthase component II	Anthranilate synthase component II	para-aminobenzoate synthase glutamine amidotransferase component II anthranilate synthase component II	glutamine amido-transferase; Similar to: HI1388, TRPG_HAEIN anthranilate synthase component II	Anthranilate/para-aminobenzoate synthases component II PabA protein	Anthranilate synthase component II	Anthranilate synthase component 2	identified by similarity to SP:P00904; similarity to SP:P00906; match to protein family HMM PF00117; match to protein family HMM TIGR00566 glutamine amido-transferase	hypothetical protein, similar to anthranilate synthase component II	ortholog to Escherichia coli bnum: b1263; MultiFun: Metabolism 1.5.1.15 anthranilate synthase component II: glutamine amidotransferase	anthranilate synthase (EC 4.1.3.27), component II 1	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2982857, 10449718; Product type e : enzyme Anthranilate synthase component II (Glutamine amido-transferase)	anthranilate synthase component II TrpD	Glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase precursor	Glutamine amidotransferase of anthranilate synthase	anthranilate synthase component II, glutamine amido-transferase	Anthranilate synthase component II	Glutamine amidotransferase of anthranilate synthase	Glutamine amidotransferase of anthranilate synthase	Glutamine amidotransferase of anthranilate synthase	Anthranilate/para-aminobenzoate synthase component II	
HELPY01253	Anthranilate synthase component 1	Putative anthranilate synthase component I	Putative anthranilate synthase, alpha subunit	Anthranilate synthase component 1	Anthranilate synthase component I	Anthranilate synthase component I	CDS_ID OB0527 anthranilate synthase component I	similar to X55994-2|CAA39467.1| percent identity: 82 in 526 aa anthranilate synthase component I	Anthranilate synthase component I	Para-aminobenzoate synthase component I	Anthranilate synthase component I	Anthranilate synthase	Anthranilate synthase component 1	SC4G6.12c, trpE3, probable anthranilate synthase component I, len: 502aa; similar to many eg. SW:TRPE_ARTGO anthranilate synthase component I from Arthrobacter globiformis (531 aa) fasta scores; opt: 1921, z-score: 2150.9, E(): 0, (60.6% identity in 500 aa overlap).  Contains Pfam match to entry PF00425 chorismate_bind, chorismate binding enzyme. putative anthranilate synthase component I	Anthranilate/para-aminobenzoate synthases component I	Anthranilate/para-aminobenzoate synthase component I	TrpE protein	Residues 1 to 520 of 520 are 99 pct identical to residues 1 to 520 of a 520 aa protein from Escherichia coli K12 ref: NP_415780.1 anthranilate synthase component I	Anthranilate synthase component I	Anthranilate synthase component I and chorismate binding enzyme	Putative anthranilate synthase component I	Anthranilate synthase component I	Anthranilate synthase	conserved gene anthranilate synthase (glutamine amidotransferase) component I	Anthranilate synthase	Anthranilate synthase, component I	identified by match to protein family HMM PF00425; match to protein family HMM PF04715 anthranilate synthase component I	menaquinone-specific isochorismate synthase	anthranilate synthase component I	
HELPY01254	Putative uncharacterized protein	Putative uncharacterized protein	Heptosyltransferase family	Putative uncharacterized protein	Putative phosphorylase	
HELPY01255	Putative uncharacterized protein	Putative	Similar to: HI0523, Y523_HAEIN ADP-heptose--lipooligosaccharide heptosyltransferase III	ADP-heptoseLPS heptosyltransferase RfaF protein	ADP-heptose--lipooligosaccharide heptosyltransferase III	glycosyl transferase, family 9	Heptosyltransferase-like protein	hypothetical protein	ADP-heptose--lipooligosaccharide heptosyltransferase III	conserved hypothetical protein similar to HP1284 High confidence in function and specificity	heptosyltransferase identified by match to protein family HMM PF01075	ADP-heptose--lipooligosaccharide heptosyltransferase III KEGG: sfr:Sfri_3928 ADP-heptose--lipooligosaccharide heptosyltransferase III	ADP-heptose:LPS heptosyltransferase	glycosyl transferase, family 9 PFAM: glycosyl transferase, family 9 KEGG: vch:VC0223 ADP-heptose--LPS heptosyltransferase II, putative	Putative uncharacterized protein	Heptosyltransferase	Putative heptosyltransferase	Heptosyltransferase	Putative ADP-heptose--LPS heptosyltransferase II	Heptosyltransferase	Glycosyl transferase family 9	Putative uncharacterized protein	Putative uncharacterized protein	ADP-heptose--lipooligosaccharide heptosyltransferase III/heptosyltransferase-like protein	Glycosyl transferase family 9	Putative uncharacterized protein	ADP-heptose--lipooligosaccharide heptosyltransferase II	Putative glycosyltransferase	
HELPY01256	Conserved hypothetical secreted protein	Putative acid phosphatase	Similar to outer membrane protein	Acid phosphatase	Outer membrane protein	5-nucleotide phosphatase	Putative uncharacterized protein gbs1810	Acid phosphatase	hypothetical protein, similar to outer membrane protein precursor	Putative	similar to GP:1944618; identified by sequence similarity; putative acid phosphatase	Ortholog of S. aureus MRSA252 (BX571856) SAR0304 putative exported protein	hypothetical protein, similar to outer membrane protein precursor	Putative acid phosphatase	best blastp match gb|AAK34595.1| (AE006613) putative acid phosphatase [Streptococcus pyogenes M1 GAS] putative acid phosphatase	lipoprotein E; OMP P4; Similar to: HI0693, HEL_HAEIN Outer membrane protein P4, NADP phosphatase	Predicted secreted acid phosphatase Hypothetical protein	Similar to Q8PER3 Acid phosphatase from Xanthomonas axonopodis (310 aa). FASTA: opt: 238 Z-score: 293.2 E(): 1.9e-08 Smith-Waterman score: 238; 24.583 identity in 240 aa overlap. ORF ftt0620 HAD superfamily protein	acid phosphatase	outer membrane protein P4	conserved hypothetical protein; possible acid phosphatase	identified by match to protein family HMM PF03767 acid phosphatase5'-nucleotidase, lipoprotein e(P4) family	Similar to Haemophilus influenzae lipoprotein e precursor Hel SW:HEL_HAEIN (P26093) (274 aa) fasta scores: E(): 3e-24, 33.942% id in 274 aa, and to Streptococcus equisimilis cytoplasmic membrane lipoprotein precursor LppC TR:O05471 (EMBL:Y12602) (285 aa) fasta scores: E(): 2.4e-38, 43.448% id in 290 aa putative exported protein	identified by similarity to GB:CAA73175.1; match to protein family HMM PF03767; match to protein family HMM TIGR01533 5'-nucleotidase, lipoprotein e(P4) family	acid phosphatase	identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533 acid phosphatase5'-nucleotidase, lipoprotein e(P4) family	Acid phosphatase (Class B)	acid phosphatase identified by match to protein family HMM PF03767	5'-nucleotidase, lipoprotein e(P4) family identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533	
HELPY01257	Conserved hypothetical secreted protein	YceI-like family protein	UPF0312 protein VPA0850	Protein yceI	2SC10A7.34c, hypothetical protein, len: 273 aa; similar to TR:Q9RDM0 (EMBL:AL136518) Streptomyces coelicolor hypothetical 31.6 kDa protein SCC123.04c, 293 aa; fasta scores: opt: 731 z-score: 837.9 E(): 0; 45.8% identity in 264 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) conserved hypothetical protein	UPF0312 protein VV2_0231	Residues 1 to 191 of 191 are 99 pct identical to residues 1 to 191 of a 191 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287190.1 orf, conserved hypothetical protein	Probable signal peptide protein	similar to conserved hypothetical proteins hypothetical protein	conserved gene hypothetical protein	similar to conserved hypothetical proteins hypothetical protein	identified by similarity to GB:AAQ60940.1; match to protein family HMM PF04264 conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to OMNI:HP1286; match to protein family HMM PF04264 conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	putative secreted protein	similar to Salmonella typhi CT18 putative exported protein putative exported protein	Putative	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative signal peptide	conserved hypothetical protein	conserved hypothetical protein	Hypothetical protein	YceI	YceI	conserved hypothetical protein	Code: S; COG: COG2353 conserved hypothetical protein	Evidence 4 : Homologs of previously reported genes of unknown function; PubMedId : 11298273 conserved protein of unknown function ; putative periplasmic protein	Code: S; COG: COG2353 conserved hypothetical protein	
HELPY01258	Transcriptional regulator	Putative transcriptional activator	Transcriptional regulator of extracellular enzyme genes	not transcription factor transcriptional activator TenA	identified by match to protein family HMM PF03070 TENA/THI-4 family protein	identified by match to protein family HMM PF03070 TenA/Thi-4 family protein	transcriptional activator of extracellular enzyme genes	similar to BR0212, transcriptional regulator TenA, hypothetical transcriptional regulator TenA, hypothetical	Putative TRANSCRIPTIONAL REGULATOR	transcriptional regulator TenA family	transcriptional activator TenA	Similar to: HI0358, Y358_HAEIN putative transcription activator	Transcriptional activator, putative	transcriptional regulator of extracellular enzymes	TENA/THI-4 protein	transcription regulator	TENA/THI-4 protein	Transcriptional activator, TenA family	Putative transcriptional activator, TenA family	Transcriptional activator, TenA family	transcriptional activator, TenA family PFAM: TENA/THI-4 protein: (5.6e-42) KEGG: sil:SPO0051 TENA/THI-4 family protein, ev=6e-96, 78% identity	transcriptional activator, TenA family PFAM: TENA/THI-4 protein KEGG: sto:ST1007 hypothetical transcriptional activator	transcription regulator	putative transcriptional regulator	transcriptional activator TenA identified by similarity to SP:P25052; match to protein family HMM PF03070	transcriptional activator, TenA family PFAM: TENA/THI-4 domain protein KEGG: rde:RD1_3613 transcriptional regulator, putative	Transcriptional activator, TenA family	TENA/THI-4 protein COG819 Putative transcription activator [Transcription]	TenA/Thi-4 family protein identified by match to protein family HMM PF03070	
HELPY01259	Putative uncharacterized protein	hypothetical protein	
HELPY01260	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01261	Nicotinamide mononucleotide transporter	NMN family, nucleoside/purine/pyrimidine transporter	NICOTINAMIDE MONONUCLEOTIDE TRANSPORTER	NR; Similar to: HI1077.1, YA7B_HAEIN nicotinamide riboside transporter	Nicotinamide mononucleotide transporter PnuC protein	Nicotinamide riboside transporter pnuC	hypothetical protein	nucleoside transporter, PnuC family	Nicotinamide mononucleotide transporter	Nicotinamide mononucleotide transporter	nicotinamide mononucleotide transporter	nicotinamide mononucleotide transporter PnuC	Nicotinamide mononucleotide transporter	Nicotinamide mononucleotide transporter	(Q57425) Hypothetical protein HI1077.1 High confidence in function and specificity	PnuC1 protein	Intergral membrane NMN transport protein PnuC	NMN family nicotinamide mononucleotide uptake permease PnuC	nicotinamide mononucleotide transport (NMT) family protein	Nicotinamide mononucleotide transporter PnuC	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein	Nicotinamide mononucleotide transporter	Nicotinamide mononucleotide transporter precursor	nicotinamide mononucleotide transporter, PnuC family	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Nicotinamide mononucleotide transporter	Nicotinamide mononucleotide transporter PnuC	Nicotinamide mononucleotide transport (NMT) family protein	Nucleoside/purine/pyrimidine transport protein	
HELPY01262	Putative uncharacterized protein	Predicted nucleotide-binding protein, YLOS B.subtilis ortholog	Thiamine pyrophosphokinase	Putative uncharacterized protein	Putative	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT2397 SWALL:AAO77504 (EMBL:AE016935) (207 aa) fasta scores: E(): 1.3e-50, 65.65% id in 198 aa, and to Helicobacter pylori J99 putative Jhp1211 SWALL:Q9ZJT7 (EMBL:AE001547) (204 aa) fasta scores: E(): 1.5e-17, 34.14% id in 205 aa, and to Helicobacter pylori hypothetical protein Hp1291 SWALL:O25878 (EMBL:AE000633) (204 aa) fasta scores: E(): 3e-17, 33.17% id in 205 aa conserved hypothetical protein	hypothetical protein	thiamine pyrophosphokinase identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378	Thiamine pyrophosphokinase	thiamine pyrophosphokinase identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378	thiamine pyrophosphokinase identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378	conserved hypothetical protein High confidence in function and specificity	Thiamine pyrophosphokinase	Putative uncharacterized protein	Putative uncharacterized protein	Probable thiamine diphosphokinase	Thiamine pyrophosphokinase	Thiamine pyrophosphokinase	Thiamine pyrophosphokinase	Thiamine pyrophosphokinase	thiamine pyrophosphokinase TIGRFAM: thiamine pyrophosphokinase PFAM: Thiamin pyrophosphokinase catalytic region KEGG: rrs:RoseRS_3933 thiamine pyrophosphokinase	Thiamine pyrophosphokinase	Thiamine pyrophosphokinase	Thiamine pyrophosphokinase	Thiamine pyrophosphokinase	Thiamine pyrophosphokinase	Putative uncharacterized protein	Thiamine pyrophosphokinase	Putative uncharacterized protein	
HELPY01263	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	CDS_ID OB0146 50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	SC6G4.08, rplQ, 50S ribosomal protein L17, len: 168 aa; highly similar to many e.g. RL17_BACST 50S ribosomal protein L17 (119 aa), fasta scores; opt: 339 z-score: 597.2 E (): 5.3e-26, 47.4% identity in 116 aa overlap.  Contains approx 50 aa C-terminal extension, not present in other RplQ 50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	
HELPY01264	DNA-directed RNA polymerase subunit alpha	RNA polymerase alpha subunit	DNA-directed RNA polymerase alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	RNA polymerase a subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	CDS_ID OB0145 DNA-directed RNA polymerase alpha subunit	DNA-directed RNA polymerase subunit alpha	similar to AF118449-1|AAD26700.1| percent identity: 69 in 333 aa putative DNA-directed RNA polymerase alpha chain	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	
HELPY01265	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	CDS_ID OB2205 30S ribosomal protein S4	30S ribosomal protein S4	similar to M59358-1|AAA22717.1| percent identity: 50 in 201 aa putative 30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4 A	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	
HELPY01266	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	CDS_ID OB0144 30S ribosomal protein S11	30S ribosomal protein S11	similar to AL049491-23|CAB39835.1| percent identity: 76 in 134 aa putative 30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	
HELPY01267	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	CDS_ID OB0143 30S ribosomal protein S13	30S ribosomal protein S13	similar to AL591983-287|CAD00686.1| percent identity: 66 in 122 aa putative 30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	
HELPY01269	Translation initiation factor IF-1	translation initiation factor IF-1	translation initiation factor IF-I	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1 2	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	CDS_ID OB0141 translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	translation initiation factor if-1 (infA)	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	SC6G4.03, infA, translational initiation factor IF1, len: 73 aa; identical to TR:O54209 (EMBL:X83011) translational initiation factor IF1 (fragment) (65 aa) and highly similar to many e.g. IF1_BACSU translation initiation factor IF-1 (71 aa), fasta scores; opt: 384 z-score: 792.5 E(): 0 , 78.6% identity in 70 aa overlap.  Contains Pfam match to e ntry PF00575 S1, S1 RNA binding motif, score 54.10, E-value 3.1e-12 translational initiation factor IF1	Translation initiation factor IF-1	
HELPY01270	Methionine aminopeptidase	methionine aminopeptidase	methionine aminopeptidase (Peptidase M)	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	similar to AX065687-1|CAC26083.1| percent identity: 84 in 263 aa putative methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	SC3C8.28c, map2, probable methionine aminopeptidase, len: 258 aa; highly similar to many e.g.  AMPM_BACSU methionine aminopeptidase (EC 3.4.11.18) (248 aa), fasta scores; opt: 655 z-score: 833.0 E(): 0, 41.1% identity in 253 aa overlap. Also similar to S. coelicolor map TR:O54208 (EMBL:X83011) (SC6G4.02); 46.8% identity in 267 aa overlap methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	identified by similarity to SP:P19994; match to protein family HMM PF00557; match to protein family HMM TIGR00500 methionine aminopeptidase, type I	InterProMatches:IPR002467; Molecular Function: methionyl aminopeptidase activity (GO:0004239), Biological Process: proteolysis and peptidolysis (GO:0006508) methionine aminopeptidase	methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	putative methionine aminopeptidase	identified by similarity to SP:P19994; match to protein family HMM PF00557; match to protein family HMM TIGR00500 methionine aminopeptidase, type I	
HELPY01271	Preprotein translocase subunit secY	preprotein translocase subunit	preprotein translocase subunit	Preprotein translocase subunit secY	Putative preprotein translocase	Preprotein translocase, SecY subunit	SecY-type transporter protein	Preprotein translocase SecY subunit	Preprotein translocase subunit secY	PROTEIN TRANSLOCASE SUBUNIT SECY	Preprotein translocase subunit secY	Putative preprotein translocase SecY protein	Preprotein translocase subunit secY	Preprotein translocase subunit secY	Preprotein translocase subunit secY	CDS_ID OB0139 preprotein translocase subunit	PREPROTEIN TRANSLOCASE SECY SUBUNIT	similar to AL583923-105|CAC30787.1| percent identity: 61 in 440 aa preprotein translocase SecY	Preprotein translocase subunit secY	secretion protein SecY	Preprotein translocase, SecY subunit	Preprotein translocase subunit secY	Protein translocase subunit	Secretion protein SecY	Preprotein translocase subunit secY	Preprotein translocase subunit secY	Preprotein translocase subunit secY	Preprotein translocase subunit secY	Preprotein translocase subunit secY	
HELPY01272	50S ribosomal protein L15	identified by similarity to SP:P19946; match to protein family HMM PF01305; match to protein family HMM TIGR01071 ribosomal protein L15	COG0200 Ribosomal protein L15 50S ribosomal protein L15	Ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	Ribosomal protein L15	Ribosomal protein L15	LSU ribosomal protein L15P	ribosomal protein L15	ribosomal protein L15 identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071	50S ribosomal protein L15	ribosomal protein L15 identified by similarity to SP:P19946; match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071	ribosomal protein L15 identified by match to protein family HMM PF01305; match to protein family HMM TIGR01071	50S ribosomal protein L15 COG200 Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]	50S ribosomal protein L15 High confidence in function and specificity	LSU ribosomal protein L15P	50S ribosomal protein L15	ribosomal protein L15 identified by match to protein family HMM PF01305; match to protein family HMM TIGR01071	Ribosomal protein L15	50S ribosomal protein L15 COG200 Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]	50S ribosomal protein L15	50S ribosomal protein L15	Ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	Ribosomal protein L15	
HELPY01273	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	CDS_ID OB0136 30S ribosomal protein S5	similar to AE006967-10|AAK44980.1| percent identity: 72 in 202 aa putative 30S ribosomal protein S5	30S ribosomal protein S5	unknown protein	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	SCD31.44, rpsE, 30S ribosomal protein S5, len: 201 aa; identical to previously sequenced SW:RS5_STRCO (EMBL:X83011) Streptomyces coelicolor 30S ribosomal protein S5 RpsE, 201 aa. Contains Pfam match to entry PF00333 Ribosomal_S5, Ribosomal protein S5 and match to Prosite entry PS00585 Ribosomal protein S5 signature 30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	
HELPY01274	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	CDS_ID OB0135 50S ribosomal protein L18	50S ribosomal protein L18	similar to Z84395-36|CAB06444.1| percent identity: 66 in 122 aa putative 50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	SCD31.43, rplR, 50S ribosomal protein L18, len: 127 aa; identical to previously sequenced SW:RL18_STRCO (EMBL:X83011) Streptomyces coelicolor 50S ribosomal protein L18 RplR, 127 aa. Contains Pfam match to entry PF00861 Ribosomal_L18p, Ribosomal L18p/L5e family and match to Prosite entry PS00358 Ribosomal protein L5 signature 50S ribosomal protein L18	50S ribosomal protein L18	
HELPY01275	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	CDS_ID OB0134 50S ribosomal protein L6	50S ribosomal protein L6	similar to AE006967-8|AAK44978.1| percent identity: 72 in 178 aa putative 50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	
HELPY01276	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	CDS_ID OB0133 30S ribosomal protein S8	30S ribosomal protein S8	similar to AP001507-148|BAB03867.1| percent identity: 58 in 132 aa putative 30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	
HELPY01278	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	CDS_ID OB0131 50S ribosomal protein L5	50S ribosomal protein L5	similar to AL161803-39|CAB82082.1| percent identity: 74 in 183 aa putative 50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	
HELPY01279	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	CDS_ID OB0130 50S ribosomal protein L24	50S ribosomal protein L24	similar to Z98756-15|CAB11447.1| percent identity: 73 in 104 aa putative 50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	SCD31.38, rplX, 50S ribosomal protein L24, len: 107 aa; highly similar to SW:RL24_BACSU (EMBL:X15664) Bacillus subtilis 50S ribosomal protein L24 RplX, 103 aa; fasta scores: opt: 390 z-score: 475.1 E(): 4.9e-19; 62.9% identity in 105 aa overlap. Contains Pfam match to entry PF00467 Ribosomal_L24, KOW motif and match to Prosite entry PS01108 Ribosomal protein L24 signature 50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	Residues 1 to 104 of 104 are 99 pct identical to residues 1 to 104 of a 104 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289870.1 50S ribosomal subunit protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50s ribosomal protein L24	
HELPY01280	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	CDS_ID OB0129 50S ribosomal protein L14	50S ribosomal protein L14	similar to Z98756-14|CAB11446.1| percent identity: 81 in 122 aa putative 50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	
HELPY01281	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	CDS_ID OB0128 30S ribosomal protein S17	30S ribosomal protein S17	similar to AL161803-36|CAB82079.1| percent identity: 57 in 92 aa putative 30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	SCD31.36, rpsQ, 30S ribosomal protein S17, len: 95 aa; highly similar to SW:RS17_BACSU (EMBL:X15664) Bacillus subtilis 30S ribosomal protein S17 RpsQ, 86 aa; fasta scores: opt: 316 z-score: 456.1 E(): 5.7e-18; 61.7% identity in 81 aa overlap. Contains Pfam match to entry PF00366 Ribosomal_S17, Ribosomal protein S17 and match to Prosite entry PS00056 Ribosomal protein S17 signature 30S ribosomal protein S17	
HELPY01282	50S ribosomal protein L29	identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012 ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	Ribosomal protein L29	Ribosomal protein L29	identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012 ribosomal protein L29	ribosomal protein L29	LSU ribosomal protein L29P	ribosomal protein L29	ribosomal protein L29 identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012	50S ribosomal protein L29 Function unclear	50S ribosomal protein L29 50S ribosomal protein L29. Family membership	ribosomal protein L29 identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012	ribosomal protein L29 PFAM: ribosomal protein L29 KEGG: sdy:SDY_3488 50S ribosomal subunit protein L29	50S ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	Ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	Ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	Ribosomal protein L29	
HELPY01283	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	CDS_ID OB0126 50S ribosomal protein L16	50S ribosomal protein L16	similar to AL583923-120|CAC30810.1| percent identity: 71 in 137 aa putative 50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	
HELPY01284	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3 (BS2)	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	CDS_ID OB0125 30S ribosomal protein S3	30S ribosomal protein S3	similar to AL161803-33|CAB82076.1| percent identity: 67 in 246 aa putative 30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	
HELPY01285	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	CDS_ID OB0124 50S ribosomal protein L22	50S ribosomal protein L22	similar to AL591983-306|CAD00705.1| percent identity: 60 in 118 aa putative 50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	SCD31.32, rplV, 50S ribosomal protein L22, len: 125 aa; highly similar to SW:RL22_BACST (EMBL:X54994) Bacillus stearothermophilus 50S ribosomal protein L22, RplV, 113 aa; fasta scores: opt: 441 z-score: 566.9 E(): 3.8e-24; 64.0% identity in 114 aa overlap. Contains Pfam match to entry PF00237 Ribosomal_L22, Ribosomal protein L22 and match to Prosite entry PS00464 Ribosomal protein L22 signature 50S ribosomal protein L22	50S ribosomal protein L22	
HELPY01286	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19 (BS19)	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	CDS_ID OB0123 30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	SCD31.31, rpsS, 30S ribosomal protein S19, len: 93 aa; highly similar to SW:RS19_BACST (EMBL:X54994) Bacillus stearothermophilus 30S ribosomal protein S19 RpsS, 91 aa; fasta scores: opt: 448 z-score: 642.9 E(): 2.2e-28; 67.8% identity in 90 aa overlap. Contains Pfam match to entry PF00203 Ribosomal_S19, Ribosomal protein S19 and match to Prosite entry PS00323 Ribosomal protein S19 signature 30S ribosomal protein S19	
HELPY01287	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	CDS_ID OB0122 50S ribosomal protein L2	50S ribosomal protein L2	similar to AL583923-124|CAC30814.1| percent identity: 78 in 280 aa putative 50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	
HELPY01288	50S ribosomal protein L23	50S ribosomal protein L23	identified by similarity to SP:P02424; match to protein family HMM PF00276 ribosomal protein L23	identified by similarity to SP:P02424; match to protein family HMM PF00276 ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	similar to BR1231, ribosomal protein L23 RplW, ribosomal protein L23	50S ribosomal protein L23	LSU ribosomal protein L23P	Ribosomal L23 protein	Ribosomal protein L25/L23	50S ribosomal protein L23	putative 50S ribosomal protein L23 similarity:fasta; with=UniProt:RL23_ECOLI (EMBL:AE005557); Shigella flexneri.; rplW; 50S ribosomal protein L23.; length=100; id 48.454; 97 aa overlap; query 1-96; subject 2-98 similarity:fasta; with=UniProt:Q8UE20_AGRT5 (EMBL:AE008112); Agrobacterium tumefaciens (strain C58/ATCC 33970).; rplW; 50S ribosomal protein L23 (AGR_C_3552p).; length=97; id 89.691; 97 aa overlap; query 1-97; subject 1-97	Ribosomal L23 protein	Ribosomal protein L25/L23 PFAM: Ribosomal protein L25/L23: (5.3e-32) KEGG: sil:SPO3823 ribosomal protein L23, ev=9e-47, 95% identity	50S ribosomal protein L23 similar to rplW (SMc01307) [Sinorhizobium meliloti] and AGR_C_3552p [Agrobacterium tumefaciens] Similar to swissprot:Q92QG8 Putative location:bacterial cytoplasm Psort-Score: 0.0283; go_component: ribosome [goid 0005840]; go_component: intracellular [goid 0005622]; go_function: structural constituent of ribosome [goid 0003735]; go_function: RNA binding [goid 0003723]; go_process: protein biosynthesis [goid 0006412]	ribosomal protein L23	LSU ribosomal protein L23P	ribosomal protein L23 identified by similarity to SP:P42924; match to protein family HMM PF00276	Ribosomal protein L23	ribosomal protein L23 identified by match to protein family HMM PF00276	ribosomal protein L23	50S ribosomal protein L23 High confidence in function and specificity	ribosomal protein L23 identified by match to protein family HMM PF00276	Ribosomal protein L25/L23 PFAM: Ribosomal protein L25/L23 KEGG: mlo:msr0293 50S ribosomal protein L23	50S ribosomal protein L23	Ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	
HELPY01289	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	similar to AL161803-28|CAB82071.1| percent identity: 59 in 212 aa putative 50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	SCD31.28, rplD, 50S ribosomal protein L4, len: 219 aa; highly similar to SW:RL4_BACST (EMBL:X67014) Bacillus stearothermophilus 50S ribosomal protein L4 RplD, 207 aa; fasta scores: opt: 563 z-score: 669.3 E(): 7.5e-30; 44.1% identity in 202 aa overlap. Contains Pfam match to entry PF00573 Ribosomal_L4, Ribosomal protein L4/L1 family 50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	Residues 1 to 201 of 201 are 99 pct identical to residues 1 to 201 of a 201 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289880.1 50S ribosomal subunit protein L4, regulates expression of S10 operon	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal subunit protein L4	conserved gene 50S ribosomal protein L4	50S ribosomal subunit protein L4	identified by match to protein family HMM PF00573 ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	
HELPY01290	50S ribosomal protein L3	ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	Residues 1 to 209 of 209 are 100 pct identical to residues 1 to 209 of a 209 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289881.1 50S ribosomal subunit protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	identified by similarity to SP:P02386; match to protein family HMM PF00297 ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	identified by match to protein family HMM PF00297 ribosomal protein L3	50S ribosomal protein L3	IPR000597: Ribosomal protein L3 50S ribosomal subunit protein L3	similar to Salmonella typhi CT18 50S ribosomal subunit protein L3 50S ribosomal subunit protein L3	Similar to Chlamydia pneumoniae 50S ribosomal protein l3 Rplc or Rl3 or cpn0647 or cp0100 SWALL:RL3_CHLPN (SWALL:Q9Z7Q7) (219 aa) fasta scores: E(): 3.5e-63, 76.14% id in 218 aa, and to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein L3 Rplc SWALL:RL3_ECOLI (SWALL:P02386) (209 aa) fasta scores: E(): 1.9e-27, 43.11% id in 218 aa putative 50s ribosomal protein	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	Similar to Q9CL32 RpL3 from Pasteurella multocida (209 aa). FASTA: 972 opt: 974 Z-score: 1212.0 E(): 1.3e-59 Smith-Waterman score: 974; 71.154identity in 208 aa overlap 50S ribosomal protein L3	Ribosomal protein L3	
HELPY01291	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10 (BS13)	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	CDS_ID OB0118 30S ribosomal protein S10	30S ribosomal protein S10	similar to Y13228-1|CAA73671.1| percent identity: 95 in 101 aa putative 30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	
HELPY01292	Conserved hypothetical ATP-binding protein	Predicted ATPase	Putative	Putative uncharacterized protein	conserved hypothetical ATP-binding protein	putative helix-turn-helix containsing protein	conserved hypothetical protein similar to HP1321 Specificity unclear	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative helix-turn-helix containsing protein	Putative helix-turn-helix containsing protein	Putative helix-turn-helix containsing protein	Conserved hypothetical ATP-binding protein	Conserved hypothetical ATP-binding protein	Putative uncharacterized protein	Conserved hypothetical ATP-binding protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01294	Ribonuclease HII	ribonuclease H	ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease	Ribonuclease HII	Ribonuclease	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	CDS_ID OB1540 ribonuclease H	similar to AL583922-114|CAC30562.1| percent identity: 54 in 201 aa putative ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease	SC5B8.02, probable ribonuclease HII, len: 233 aa; si milar to many e.g. RNH2_ECOLI P10442 ribonuclease hii (EC 3 .1.26.4) (213 aa), fasta scores; opt: 444 z-score: 689.5 E( ): 3.2e-31, 42.5% identity in 179 aa overlap probable ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	
HELPY01293	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01295	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01296	Fumarate hydratase class II	Fumarate hydratase, class II	Fumarate hydratase, class-II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	CDS_ID OB1132 fumarate hydratase	similar to AX064891-1|CAC25685.1| percent identity: 92 in 469 aa putative fumarate hydratase	Stongly putative fumarate hydratase class II, fumC	fumarate hydratase C	Fumarate hydratase	Fumarate hydratase class II	Fumarate hydratase C	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase c	Fumarate hydratase class II	Residues 1 to 467 of 467 are 99 pct identical to residues 1 to 467 of a 467 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288046.1 fumarase C= fumarate hydratase Class II; isozyme	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	fumarate hydratase, class II	conserved gene fumarate hydratase	fumarate hydratase, class II	
HELPY01297	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01298	Putative uncharacterized protein	Outer membrane efflux protein	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative exported protein	Putative uncharacterized protein	Outer membrane efflux protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01299	Cation efflux system protein	Cation efflux system protein cusB	Chemiosmotic efflux system B protein B	CATION EFFLUX SYSTEM PROTEIN	Probable Co/Zn/Cd efflux system membrane fusion protein	cation efflux system transmembrane protein	Copper efflux pump membrane fusion protein	Secretion protein HlyD	Secretion protein HlyD	Code: M; COG: COG0845 putative resistance protein	Secretion protein HlyD	Code: M; COG: COG0845 putative resistance protein	Secretion protein HlyD	Cation efflux system protein	Secretion protein HlyD	Putative copper efflux system protein CusB	Efflux transporter, RND family, MFP subunit precursor	cation efflux system protein	Hypothetical protein precursor	H+-transporting two-sector ATPase, delta (OSCP) subunit	Secretion protein HlyD	secretion protein HlyD	Efflux transporter, RND family, MFP subunit precursor	Secretion protein HlyD	Putative resistance protein	efflux transporter, RND family, MFP subunit TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: ade:Adeh_4105 secretion protein HlyD	efflux transporter, RND family, MFP subunit TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: ilo:IL1223 membrane-fusion protein, RND-like efflux system component	cation efflux system protein High confidence in function and specificity	copper/silver resistance periplasmic protein identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730	
HELPY01300	Cation efflux system protein	Putative cation efflux system transmembrane protein	Cation efflux system protein cusA	Putative inner membrane component for iron transport	Putative silver efflux pump	Residues 1 to 1046 of 1047 are 99 pct identical to residues 1 to 1046 of a 1047 aa protein from Escherichia coli K12 ref: NP_415107.1 putative inner membrane component for iron transport	Probable cation efflux system transmembrane protein	Chemiosmotic efflux system B protein A	CATION EFFLUX SYSTEM PROTEIN	Heavy metal efflux pump, CzcA family	copper/silver resistance inner membrane protein	Similar to Legionella pneumophila chemiosmotic efflux system B protein A CebA SWALL:Q8RNP2 (EMBL:AF480912) (1047 aa) fasta scores: E(): 1.9e-46, 35.28% id in 1244 aa, and to Escherichia coli cation efflux system protein CusA or B0575 SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 3.4e-40, 32.77% id in 1251 aa putative copper/silver resistance-related transport membrane protein	Cation efflux system protein	identified by similarity to SP:P38054; match to protein family HMM PF00873; match to protein family HMM TIGR00914 cation efflux system protein CusA	Copper efflux pump	Code: P; COG: COG3696 putative inner membrane component for iron transport	Putative inner membrane component for iron transport	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12813074, 11222619; Product type t : transporter cation efflux system protein cusA	Code: P; COG: COG3696 putative inner membrane component for iron transport	Heavy metal efflux pump CzcA	heavy metal efflux pump CzcA	Heavy metal efflux pump CzcA	Heavy metal efflux pump CzcA	Heavy metal efflux pump CzcA	putative silver efflux pump COG3696	Heavy metal efflux pump CzcA precursor	heavy metal efflux pump, CzcA family identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914	probable cation efflux system protein (heavy metal efflux pump), CzcA family similar to VPA0480 [Vibrio parahaemolyticus RIMD 2210633], Magn5447 [Magnetospirillum magnetotacticum] andblr4933 [Bradyrhizobium japonicum] Similar to swissprot:Q87IX6 Putative location:bacterial inner membrane Psort-Score: 0.5925; go_component: integral to membrane [goid 0016021]; go_function: cation transporter activity [goid 0008324]; go_process: cation transport [goid 0006812]	Putative cation efflux system protein CusA	
HELPY01301	Uncharacterized protein HP_1330	Putative uncharacterized protein	Hypothetical protein JHP1250	Similar to: HI1737, YH37_HAEIN predicted branched-chain amino acid permease	Predicted branched-chain amino acid permeases (azaleucine resistance) AzlD protein	branched chain amino acid transport protein AzlD	branched-chain amino acid transport protein	hypothetical protein similarity to COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance)(Evalue: 8E-32)	Possible branched-chain amino acid transport protein	branched-chain amino acid permease COG family: predicted branched-chain aminoacid permeases (azaleucine resistance) Orthologue of BL1668	conserved hypothetical protein High confidence in function and specificity	branched-chain amino acid transport PFAM: branched-chain amino acid transport KEGG: mac:MA3438 branched chain amino acid transport protein AzlD	Predicted branched-chain amino acid permease	Predicted branched-chain amino acid permease	Branched-chain amino acid transport precursor	Branched-chain amino acid transport	Branched-chain amino acid transport	Branched-chain amino acid transport	Branched chain amino acid transport protein AzlD	Putative uncharacterized protein	Branched-chain amino acid transport protein	Branched-chain amino acid transport	Hypothetical branched-chain amino acid permease	Putative uncharacterized protein	Putative uncharacterized protein	Branched-chain amino acid transport	Branched-chain amino acid transport protein	Branched-chain amino acid transport	Putative branched-chain amino acid transport protein	
HELPY01302	Uncharacterized membrane protein HP_1331	Putative uncharacterized protein	similar to AE000634-11|AAD08372.1| percent identity: 28 in 220 aa conserved hypothetical protein	hypothetical protein	Residues 1 to 245 of 245 are 99 pct identical to residues 1 to 245 of a 245 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289233.1 orf, conserved hypothetical protein	Putative amino acid transporter	Probable branched-chain amino acid permease (Azaleucine resistance) transmembrane protein	Similar to unknown protein YgaZ of Escherichia coli	Probable branched-chain amino acid permease, AzlC family protein	azaleucine resistance branched-chain amino acid permease AzlC	Putative uncharacterized protein	Hypothetical protein JHP1251	Putative LIV-E family branched chain amino acid exporter, large subunit	Similar to: HI1738, YH38_HAEIN predicted branched-chain amino acid permease	Predicted branched-chain amino acid permease (azaleucine resistance) AzlC protein	AzlC protein	Branched-chain amino acid transport protein azlC.,Involved in branched-chain amino acid transport. branched-chain amino acid transport protein	AzlC-like	ABC-type transport system permease protein (probable substrates branched-chain amino acids), azaleucine resistance protein	Code: E; COG: COG1296 conserved hypothetical protein	hypothetical protein	Code: E; COG: COG1296 conserved hypothetical protein	putative membrane protein	AzlC-like	AzlC-like protein	Code: E; COG: COG1296; orf conserved hypothetical protein	azaleucine resistance protein AzlC identified by match to protein family HMM PF03591	Putative uncharacterized protein	ABC-type transport system permease protein (probable substrates branched-chain amino acids),azaleucine resistance protein	
HELPY01303	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	CDS_ID OB1967 heat shock protein	Chaperone protein dnaJ	similar to AE007083-9|AAK46736.1| percent identity: 56 in 378 aa putative chaperonin DnaJ	heat shock protein dnaJ (40)	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	Residues 11 to 386 of 386 are 97 pct identical to residues 1 to 376 of a 376 aa protein from Escherichia coli K12 ref: NP_414556.1 chaperone with DnaK; heat shock protein	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	identified by similarity to SP:P45555; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556 dnaJ protein	DnaJ protein	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ 1	Mb0360, dnaJ1, len: 395 aa. Equivalent to Rv0352, len: 395 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 395 aa overlap). Probable DnaJ1, chaperone protein, equivalent to AAA25363.1|M95576 DNA J heatshock protein from Mycobacterium leprae (389 aa). Also highly similar to others. Contains both DnaJ signatures (PS00636, and PS00637). BELONGS TO THE DNAJ FAMILY.  COFACTOR: BINDS TWO ZINC IONS PER MONOMER. Note that sequence differs from DNAJ_MYCTU|P07881 due to a frameshift at the N-terminus. Note that previously known as dnaJ. PROBABLE CHAPERONE PROTEIN DNAJ1	molecular chaperone DnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ 1	Similar to Escherichia coli chaperone protein DNAJ SWALL:DNAJ_ECOLI (SWALL:P08622) (375 aa) fasta scores: E(): 2.6e-42, 47.08% id in 395 aa and to Rhodobacter capsulatus chaperone protein DnaJ SWALL:DNAJ_RHOCA (SWALL:Q52702) (384 aa) fasta scores: E(): 4.7e-52, 42.38% id in 394 aa molecular chaperone protein	Chaperone protein dnaJ	DnaJ protein	COG0484 DnaJ molecular chaperones (contain C-terminal Zn finger domain) DNAJ protein	Chaperone protein dnaJ	
HELPY01304	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01305	Putative uncharacterized protein	identified by similarity to OMNI:NTL01CE0348 conserved domain protein	conserved hypothetical protein	Hypothetical protein	Similar to Neisseria meningitidis hypothetical protein nma2192 or rei1 SWALL:Q9JQX9 (EMBL:AL162758) (219 aa) fasta scores: E(): 1.1e-26, 43.83% id in 219 aa, and to the C-terminal region of Corynebacterium efficiens conserved hypothetical protein ce0348 SWALL:Q8FSN5 (EMBL:AP005215) (281 aa) fasta scores: E(): 7.7e-37, 48.9% id in 229 aa conserved hypothetical protein	hypothetical protein	conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein KEGG: pfo:Pfl_2418 hypothetical protein	Hypothetical protein	Hypothetical protein	Hypothetical protein	conserved hypothetical protein Code: S; COG: COG1432	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Gp9, Cpp15	
HELPY01306	tRNA-specific 2-thiouridylase mnmA	tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	similar to AL021287-38|CAA16109.1| percent identity: 61 in 366 aa putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	SC2A11.22, trmU, probable tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase, len: 376 aa; similar to many e.g. TRMU_BACSU probable tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase (370 aa), fasta scores; opt: 708 z-score: 748.3 E(): 0, 38.1% identity in 365 aa overlap tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA 1	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	identified by similarity to SP:O25893; match to protein family HMM PF03054; match to protein family HMM TIGR00420 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA 5-methylaminomethyl-2-thiouridylate- methyltransferase protein	tRNA-specific 2-thiouridylase mnmA	Mb3050c, trmU, len: 367 aa. Equivalent to Rv3024c, len: 367 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 367 aa overlap). Probable trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61), equivalent to O33099|TRMU_MYCLE|ML1707|MLCB637.07 PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE from Mycobacterium leprae (358 aa), FASTA scores: opt: 2033, E(): 5.5e-116, (85.45% identity in 357 aa overlap).  Also highly similar to others e.g.  O86583|TRMU_STRCO|SC2A11.22 from Streptomyces coelicolor (376 aa), FASTA scores: opt: 1336, E(): 1e-73, (56.9% identity in 369 aa overlap); BAB49856|MLR2824 from Rhizobium loti (378 aa), FASTA scores: opt: 826, E(): 8.3e-43, (42.35% identity in 359 aa overlap); Q9ZDM1|TRMU_RICPR|RP306 from Rickettsia prowazekii (358 aa), FASTA scores: opt: 800, E(): 3e-41, (40.1% identity in 359 aa overlap); etc. BELONGS TO THE TRMU FAMILY. PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE TRMU	Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase	Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contain the PP-loop ATPase domain	tRNA-specific 2-thiouridylase mnmA	similar to BR1591, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	
HELPY01308	Probable nicotinate-nucleotide adenylyltransferase	hypothetical protein	nicotinate-nucleotide adenylyltransferase	Probable nicotinate-nucleotide adenylyltransferase	Probable nicotinate-nucleotide adenylyltransferase	Nicotinate-nucleotide adenylyltransferase	CDS_ID OB1985 nicotinate-nucleotide adenylyltransferase	Probable nicotinate-nucleotide adenylyltransferase	Probable nicotinate-nucleotide adenylyltransferase	Probable nicotinate-nucleotide adenylyltransferase	Probable nicotinate-nucleotide adenylyltransferase	Residues 1 to 213 of 213 are 100 pct identical to residues 1 to 213 of a 213 aa protein from Escherichia coli K12 ref: NP_415172.1 orf, conserved hypothetical protein	Cytidylyltransferase	Probable nicotinate-nucleotide adenylyltransferase	Similar to nicotinate-nucleotide adenylyltransferase NadD hypothetical protein	conserved gene nicotinate-nucleotide adenylyltransferase	Similar to nicotinate-nucleotide adenylyltransferase NadD hypothetical protein	identified by similarity to OMNI:SA1650; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase	Nicotinate-nucleotide adenylyltransferase	Probable nicotinate-nucleotide adenylyltransferase	conserved hypothetical protein	Probable nicotinate-nucleotide adenylyltransferase	identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase	nicotinate-nucleotide adenylyltransferase	nicotinate-nucleotide adenylyltransferase	NadD putative nicotinate-nucleotide adenyltransferase	Putative uncharacterized protein TTHA1780	Probable nicotinate-nucleotide adenylyltransferase	putative Nicotinic acid mononucleotide adenylyltransferase	
HELPY01307	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein Function unclear	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01309	Putative nickel-responsive regulator	Nickel-responsive regulator	Putative nickel-responsive regulator	Putative nickel-responsive regulator	Residues 1 to 133 of 133 are 100 pct identical to residues 1 to 133 of a 133 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290047.1 orf, conserved hypothetical protein	probable nickel responsive regulator	Nickel-responsive transcriptional regulator NikR	IPR002145: Helix-turn-helix protein, CopG family nickel-responsive transcriptional regulator	similar to Salmonella typhi CT18 nickel responsive regulator nickel responsive regulator	Putative nickel-responsive regulator	similar to BRA0805, nikR protein, hypothetical hypothetical NikR	Putative nickel responsive regulator	Putative nickel-responsive regulator	Nickel-responsive regulator	Hypothetical nickel responsive regulator	probable transcription regulator	Code: K; COG: COG0864 conserved hypothetical protein	Helix-turn-helix protein, CopG family	Code: K; COG: COG0864 conserved hypothetical protein	Transcriptional regulator, CopG family	putative transcriptional regulator, CopG family	putative transcriptional regulator, CopG family	putative nickel responsive regulator COG0864	putative transcriptional regulator, CopG family	Code: K; COG: COG0864; orf conserved hypothetical protein	Nickel-responsive regulator	putative transcriptional regulator, CopG family	nickel uptake regulation protein	predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	
HELPY01310	Biopolymer transport protein exbB	Biopolymer transport protein	Biopolymer transport exbB protein	Biopolymer transport protein COG0811	biopolymer transport protein	biopolymer transport protein (Q9ZJP6) Biopolymer transport exbB protein High confidence in function and specificity	TonB system transport protein ExbB identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805	TonB system transport protein ExbB	Putative ExbB/TolQ family transport protein	TonB-system energizer ExbB type-2	TonB-system energizer ExbB	TonB-system energizer ExbB	TonB-system energizer ExbB	Biopolymer transport protein	Biopolymer transport protein	TonB system transport protein ExbB	Biopolymer transport protein ExbB	
HELPY01311	Biopolymer transport protein exbD	Biopolymer transport protein exbD	Residues 1 to 141 of 141 are 100 pct identical to residues 1 to 141 of a 141 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289582.1 uptake of enterochelin; tonB-dependent uptake of B colicins	Biopolymer transport exbD transmembrane protein	identified by similarity to SP:P43009; match to protein family HMM PF02472 biopolymer transport exbD protein	IPR003400: Biopolymer transport protein ExbD/TolR uptake of enterochelin; tonB-dependent uptake of B colicins	similar to Salmonella typhi CT18 biopolymer transport ExbD protein biopolymer transport ExbD protein	Biopolymer transport protein	Biopolymer transport exbD protein	Biopolymer transport protein	Uptake of enterochelin	Biopolymer transport protein ExbD/TolR	identified by match to protein family HMM PF02472 TonB system transport protein	Biopolymer transport protein ExbD/TolR	Code: U; COG: COG0848 uptake of enterochelin; tonB-dependent uptake of B colicins	uptake of enterochelin; tonB-dependent uptake of B colicins; Code: U; COG: COG0848 ExbD	Biopolymer transport protein ExbD/TolR	uptake of enterochelin; tonB-dependent uptake of B colicins; Code: U; COG: COG0848 ExbD	Biopolymer transport protein ExbD/TolR	Biopolymer transport protein ExbD/TolR	Biopolymer transport ExbD protein	Biopolymer transport protein ExbD/TolR	Biopolymer transport protein TolR	biopolymer transport protein	Biopolymer transport protein ExbD/TolR	Biopolymer transport protein ExbD/TolR	TonB-dependent enterochelin uptake protein	Biopolymer transport protein ExbD/TolR	Biopolymer transport protein ExbD/TolR	
HELPY01312	Protein tonB	TonB-like protein	energy transducer TonB	Periplasmic protein TonB	TonB protein	Similarities with energy transducer TonB.  Putative secreted protein	similar to BR1668, TonB-dependent receptor TonB-dependent receptor	TonB protein	TonB protein	TonB protein	Similar to: HI0251, TONB_HAEIN TonB	Similar to Bacteroides thetaiotaomicron TonB BT2665 SWALL:Q8A4D4 (EMBL:AE016937) (270 aa) fasta scores: E(): 4.7e-74, 77.94% id in 272 aa, and to Bacteroides thetaiotaomicron TonB BT2059 SWALL:Q8A627 (EMBL:AE016934) (227 aa) fasta scores: E(): 3.3e-20, 37.71% id in 236 aa putative TonB-family outer membrane receptor protein	Periplasmic protein TonB, links inner and outer membranes TonB protein	Ferric siderophore transport system, periplasmic binding protein TonB	TonB protein	TobB energy transducing protein	identified by similarity to SP:Q05613; match to protein family HMM PF03544; match to protein family HMM TIGR01352 ferric siderophore transporter, periplasmic energy transduction protein TonB	TonB, C-terminal	TonB like protein	ATP/GTP-binding site motif A (P-loop):Proline-rich extensin:Gram-negative bacterial tonB protein:TonB, C-terminal	siderophore-mediated iron transport protein	TonB domain protein	TonB family protein identified by match to protein family HMM TIGR01352	TonB-like	TonB-like	TonB-like	siderophore-mediated iron transport protein	TonB protein precursor	TonB protein	
HELPY01313	Outer membrane protein	Putative Outer membrane protein	
HELPY01314	Conserved hypothetical integral membrane protein	INTEGRAL MEMBRANE PROTEIN	Conserved hypothetical transmembrane protein	UPF0053 inner membrane protein ygdQ	hypothetical protein, putative transport protein	Possibly involved in transport	TerC family protein, ortholog of stress responce protein	Integral membrane protein	Residues 1 to 237 of 237 are 99 pct identical to residues 1 to 237 of a 237 aa protein from Escherichia coli O157:H7 ref: NP_311716.1 putative transport protein	Similar to putative transport protein YgdQ of Escherichia coli	similar to putative transport proteins hypothetical protein	conserved gene transport protein	similar to putative transport proteins hypothetical protein	identified by similarity to SP:P43932; match to protein family HMM PF03741 integral membrane protein, TerC family	Cellular Component: integral to membrane (GO:0016021) Integral membrane protein TerC family	IPR005496: Integral membrane protein TerC family putative integral membrane transport protein	Membrane protein TerC, possibly involved in tellurium resistance	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Putative uncharacterized protein	similar to BR1721, conserved hypothetical protein conserved hypothetical protein	Putative	Similar to sp|Q46931|YGDQ_ECOLI sp|P43932|YGDQ_HAEIN; Ortholog to ERGA_CDS_04790 Conserved hypothetical protein	COG0861 membrane protein TerC, possibly involved in tellurium resistance membrane protein	possibly involved in tellurium resistance; Similar to: HI0056, YGDQ_HAEIN putative membrane protein TerC	Membrane protein TerC, possibly involved in tellurium resistance TerC protein	Putative uncharacterized protein	Uncharacterized conserved membrane protein	Putative integral membrane transport protein	Membrane protein terC	
HELPY01315	Magnesium transport protein corA	Putative magnesium/cobalt transport protein	magnesium/cobalt transport protein	Putative magnesium/cobalt transport protein	Probable magnesium and cobalt transport transmembrane protein	Magnesium transport protein corA	Magnesium and cobalt transport protein corA	cation transporter CorA family	identified by similarity to SP:P27841; match to protein family HMM PF01544; match to protein family HMM TIGR00383 magnesium and cobalt transport protein CorA	Magnesium and cobalt transport protein CorA	Magnesium transport protein corA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark magnesium and cobalt transport protein	Magnesium transport protein corA	Putative uncharacterized protein gbs1756	MAGNESIUM AND COBALT TRANSPORT PROTEIN	identified by match to PFAM protein family HMM PF01544 magnesium transporter, CorA family	Magnesium and cobalt transport protein	best blastp match gb|AAK34549.1| (AE006609) putative divalent cation transport protein [Streptococcus pyogenes M1 GAS] putative divalent cation transport	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter magnesium and cobalt transport protein	Putative Magnesium and cobalt transporter	Similar to: HI1035, CORA_HAEIN magnesium and cobalt transport protein CorA	Similar to Bacteroides thetaiotaomicron Mg2+/Co2+ transport protein BT4679 SWALL:AAO79784 (EMBL:AE016946) (350 aa) fasta scores: E(): 3e-107, 78.75% id in 353 aa, and to Synechocystis sp. magnesium and cobalt transport protein sll0507 SWALL:Q55481 (EMBL:D64006) (387 aa) fasta scores: E(): 2.5e-32, 32.14% id in 336 aa, and to Methanosarcina acetivorans magnesium Mg CorA or Ma1721 SWALL:Q8TQ31 (EMBL:AE010846) (356 aa) fasta scores: E(): 6.9e-31, 36.61% id in 355 aa putative transmembrane magnesium and cobalt transporter protein	Mg2+ and Co2+ transporters CorA protein	CorA cation transporter (MIT) family protein	Magnesium and cobalt transport protein	magnesium and cobalt transport protein	hypothetical protein, similar to divalent cation transporter	ortholog to Escherichia coli bnum: b3816; MultiFun: Cell structure 6.1; Transport 4.9.A.17, 4.S.121 Mg2+/Ni2+/Co2+ transport protein (Mg transport system I) (MIT family)	
HELPY01316	Phosphoglycerate kinase	phosphoglycerate kinase	3-phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	CDS_ID OB2437 phosphoglycerate kinase	similar to X54519-1|CAA38375.1| percent identity: 49 in 405 aa phosphoglycerate kinase	Phosphoglycerate kinase	phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	SCC54.06c, pgk, phosphoglycerate kinase, len: 403 aa; member of a family of proteins highly conserved across prokaryotes and eukaryotes, e.g. SW:PGK_BACSU Pgk, phosphoglycerate kinase from Bacillus subtilis (394 aa) fasta scores; opt: 1263, z-score: 1322.3, E(): 0, (51.2% identity in 404 aa overlap) and SW:PGKH_SPIOL phosphoglycerate kinase from Spinacia oleracea (Spinach) (433 aa) fasta scores; opt: 1200, z-score: 1256.1, E(): 0, (49.9% identity in 407 aa overlap). Contains PS00111 Phosphoglycerate kinase signature and Pfam match to entry PF00162 PGK, Phosphoglycerate kinases, score 654.10, E-value 7.1e-193. phosphoglycerate kinase	
HELPY01317	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase, type I	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	glyceraldehyde-3-phosphate dehydrogenase(GAPDH)	Glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase(GAPDH)	Glyceraldehyde 3-phosphate dehydrogenase	Probable glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 glyceraldehyde 3-phosphate dehydrogenase A	Glyceraldehyde-3-phosphate dehydrogenase, type I	Glyceraldehyde-3-phosphate dehydrogenase	similar to BR1728, glyceraldehyde 3-phosphate dehydrogenase Gap, glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde 3-phosphate dehydrogenase	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	Glyceraldehyde 3-phosphate dehydrogenase(NADP+; phosphorylating)	COG0057 GapA glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde 3-phosphate dehydrogenase	, predicted protein, len = 216 aa, probably glyceraldehyde 3-phosphate dehydrogenase, cytosolic; predicted pI = 9.0636; good similarity to G3PC_LEIME, glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) (330 aa, Leishmania mexicana, EMBL: X65220, CAA46323); Fasta scores: E():1.8e-69, 86.916% identity (87.324% ungapped) in 214 aa overlap, (aa 1-214 of , aa 117-329 of G3PC_LEIME) glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative	go_component: cytoplasm [goid 0005737]; go_component: lipid particle [goid 0005811]; go_component: cytosol [goid 0005829]; go_component: cell wall (sensu Fungi) [goid 0009277]; go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity [goid 0004365]; go_process: gluconeogenesis [goid 0006094]; go_process: glycolysis [goid 0006096] glyceraldehyde-3-phosphate dehydrogenase, putative	Glyceraldehyde 3-phosphate dehydrogenase	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)	Glyceraldehyde-3-phosphate dehydrogenase, type I	Best Blastp Hit: pir||H81224 glyceraldehyde 3-phosphate dehydrogenase NMB0207 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225429|gb|AAF40664.1| (AE002378) glyceraldehyde 3-phosphate dehydrogenase [Neisseria meningitidis MC58] COG0057 Glyceraldehyde-3-phosphate dehydrogenase; GapA putative glyceraldehyde 3-phosphate dehydrogenase	glyceraldehyde-3-phosphate dehydrogenase, type I	Glyceraldehyde-3-phosphate dehydrogenase, type I	Glyceraldehyde 3-phosphate dehydrogenase:TrkA potassium uptake protein:Glyceraldehyde-3-phosphate dehydrogenase, type I	glyceraldehyde-3-phosphate dehydrogenase, type I identified by similarity to SP:O34425; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534	Glyceraldehyde-3-phosphate dehydrogenase, type I	
HELPY01318	Uracil-DNA glycosylase	uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	CDS_ID OB2129 uracil-DNA glycosylase	Uracil-DNA glycosylase	Probable uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Residues 1 to 183 of 183 are 100 pct identical to residues 1 to 183 of a 229 aa protein pdb: 1EUG Chain A, Crystal Structure Of Escherichia Coli Uracil Dna Glycosylase And Its Complexes With Uracil And Glycerol: Structure And Glycosylase Mechanism Revisited	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	
HELPY01319	1-acyl-sn-glycerol-3-phosphate acyltransferase	CDS_ID OB0869 1-acyl-sn-glycerol-3-phosphate acetyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein	identified by match to protein family HMM PF01553 acyltransferase, putative	identified by similarity to SP:O25903; match to protein family HMM PF01553 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative	1-acyl-glycerol-3-phosphate acyltransferase PlsC	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by similarity to SP:O25903; match to protein family HMM PF01553 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	Phospholipid/glycerol acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase alpha (EC 2.3.1.51)(1-acylglycerol-3-phosphate O-acyltransferase 1)(1-AGP acyltransferase 1)(1-AGPAT 1)(Lysophosphatidic acid acyltransferase alpha)(LPAAT-alpha)(Protein G15) [Source:UniProtKB/Swiss-Prot;Acc:Q99943]	Phospholipid/glycerol acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	putative acetyltransferase similarity:fasta; with=UniProt:Q8U9W6_AGRT5 (EMBL:AE008322); Agrobacterium tumefaciens (strain C58/ATCC 33970).; plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGR_L_2433p).; length=266; id 77.519; 258 aa overlap; query 7-264; subject 2-259	Phospholipid/glycerol acyltransferase	phospholipid/glycerol acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase family protein identified by match to protein family HMM PF01553	1-acyl-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530	1-acyl-sn-glycerol-3-phosphate acyltransferases	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferases KEGG: cch:Cag_0137 1-acyl-sn-glycerol-3-phosphate acyltransferase TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases PFAM: phospholipid/glycerol acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	phospholipid/glycerol acyltransferase PFAM: phospholipid/glycerol acyltransferase KEGG: aba:Acid345_0120 1-acyl-sn-glycerol-3-phosphate acyltransferases	1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530	transcript_id=ENSOGAT00000010191	
HELPY01320	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	putative periplasmic protein	conserved hypothetical protein hypothetical protein	conserved domain protein	Putative uncharacterized protein	Putative uncharacterized protein	Conserved domain protein	Putative periplasmic protein	Putative uncharacterized protein	Putative periplasmic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01321	Protease	carboxyl-terminal processing protease	Carboxy-terminal protease	TAIL-SPECIFIC PROTEASE	CDS_ID OB2490 carboxy-terminal processing protease	carboxyl-terminal protease	Carboxy-terminal processing protease	Putative periplasmic carboxyl-terminal processing protease	Carboxyl-terminal protease	Carboxy-terminal processing protease	SCE59.26c, probable carboxy-terminal processing protease precursor, len: 374 aa; similar to SW:CTPA_BARBA (EMBL:L37094) Bartonella bacilliformis carboxy-terminal processing protease precursor (C-terminal processing protease) CtpA, 434 aa; fasta scores: opt: 505 z-score: 527.2 E(): 6e-22; 30.6% identity in 337 aa overlap.  Contains Pfam match to entry PF00595 PDZ, PDZ domain (Also known as DHR or GLGF) and possible N-terminal region signal peptide sequence putative carboxy-terminal processing protease precursor	Periplasmic protease	TAIL-SPECIFIC PROTEASE	Lin1965 protein	Carboxy-terminal processing protease ctpA	Carboxy-terminal processing protease	Carboxy-terminal processing protease	Probable ctpA-like serine protease	Probable peptidase transmembrane protein	similar to carboxy-terminal protease family protein hypothetical protein	conserved gene carboxy-terminal protease	similar to carboxy-terminal protease family protein hypothetical protein	Carboxy-terminal processing proteinase	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 carboxyl-terminal protease family protein	Carboxy-terminal processing protease	Carboxyl-terminal protease	Periplasmic protease	identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 carboxyl-terminal protease	C-terminal processing peptidase protein	
HELPY01322	Putative uncharacterized protein	type II restriction endonuclease	ICEF-IA ORF9 ortholog	Putative uncharacterized protein	Type II restriction endonuclease	
HELPY01323	Adenine specific DNA methyltransferase	adenine DNA methyltransferase	Possible adenine DNA methyltransferase	identified by match to protein family HMM PF01555 modification methylase	Cell cycle regulated site-specific DNA- methyltransferase protein	similar to BR0491, modification methylase BabI BabI, modification methylase BabI	Adenine DNA methyltransferase protein	TYPE II DNA MODIFICATION ENZYME	COG0863 adenine-specific methyltransferase	site-specific DNA methyltransferase	DNA methylase N-4/N-6	SAM (and some other nucleotide) binding motif:Site-specific DNA-methyltransferase (cytosine-N4-specific):N-6 Adenine-specific...	DNA methylase N-4/N-6	DNA methylase N-4/N-6	DNA methylase N-4/N-6	putative modification methylase similarity:fasta; with=UniProt:MTS1_RHIME (EMBL:AF011894); Rhizobium meliloti (Sinorhizobium meliloti).; smeIM; Modification methylase SmeIP (EC 2.1.1.72) (Adenine-specific methyltransferase SmeIP) (M.SmeI) (M.CcrMI).; length=376; id 85.979; 378 aa overlap; query 1-378; subject 1-374 similarity:fasta; with=UniProt:Q8UH89; Agrobacterium tumefaciens (strain C58/ATCC 33970).; Adenine DNA methyltransferase (AGR_C_1453p).; length=386; id 86.089; 381 aa overlap; query 1-380; subject 6-386	DNA methylase N-4/N-6	DNA methylase N-4/N-6 PFAM: DNA methylase N-4/N-6: (4.2e-91) KEGG: sil:SPO3451 modification methylase, ev=0.0, 88% identity	DNA methylase N-4/N-6	site-specific DNA-methyltransferase (adenine-specific) protein similar to ccrM (SMc00021) [Sinorhizobium meliloti] and AGR_C_1453p [Agrobacterium tumefaciens] Similar to entrez-protein:O30569 Putative location:bacterial cytoplasm Psort-Score: 0.2972; go_function: transferase activity [goid 0016740]; go_function: DNA binding [goid 0003677]; go_function: S-adenosylmethionine-dependent methyltransferase activity [goid 0008757]; go_function: methyltransferase activity [goid 0008168]; go_function: N-methyltransferase activity [goid 0008170]; go_function: site-specific DNA-methyltransferase (adenine-specific) activity [goid 0009007]; go_process: DNA replication [goid 0006260]; go_process: DNA methylation [goid 0006306]	DNA methylase N-4/N-6	adenine specific DNA methyltransferase	Adenine-specific methyltransferase	DNA methylase N-4/N-6	DNA methylase N-4/N-6	Modification methylase CcrM	modification methylase COG0863 DNA modification methylase	Modification methylase CcrmI	DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6 domain protein KEGG: rsp:RSP_1468 site-specific DNA-methyltransferase	

HELPY01324	Putative adenine specific DNA methyltransferase	identified by similarity to OMNI:BBQ67; match to protein family HMM TIGR01612 D12 class N6 adenine-specific DNA methyltransferase, putative	Putative	adenine specific DNA methyltransferase	adenine specific DNA methyltransferase	conserved hypothetical protein similarity:fasta; with=UniProt:Q64BQ7_9ARCH (EMBL:AY714843); uncultured archaeon GZfos26G2.; Adenine specific DNA methyltransferase.; length=1034; id 34.112; 1070 aa overlap; query 2-1041; subject 12-1025	adenine specific DNA methyltransferase	Adenine specific DNA methyltransferase	Hypothetical protein	putative adenine specific DNA methyltransferase fragment 1 (Q47282) Type I restriction enzyme EcoEI M protein (EC 2.1.1.72) (M.EcoEI) hypothetical protein	conserved protein of unknown function	Putative uncharacterized protein	Adenine specific DNA methyltransferase	Putative uncharacterized protein	Adenine specific DNA methyltransferase	Adenine specific DNA methyltransferase	N-6 DNA methylase	pseudo	adenine specific DNA methyltransferase	Putative uncharacterized protein	
HELPY01325	Probable nicotinate-nucleotide pyrophosphorylase	nicotinate-nucleotide pyrophosphorylase	nicotinate-nucleotide pyrophosphorylase	Putative quinolinate phosphoribosyltransferase	Putative nicotinate-nucleotide pyrophosphorylase	Nicotinate-nucleotide pyrophosphorylase	NadC	Nicotinate-nucleotide pyrophosphorylase	Quinolinate phosphoribosyltransferase	similar to AF311738-5|AAG47789.1| percent identity: 49 in 277 aa putative nicotinate mononucleotide pyrophosphorylase	Nicotinate-nucleotide pyrophosphorylase	Nicotinate-mononucleotide pyrophosphorylase	Nicotinate-nucleotide pyrophosphorylase	Nicotinate-nucleotide pyrophosphorylase	Nicotinate-nucleotide pyrophosphorylase	SCE94.32c, nadC, nicotinate-nucleotide pyrophophorylase, len: 329 aa; similar to many e.g.  SW:NADC_MYCTU NadC, nicotinate-nucleotide pyrophophorylase from Mycobacterium tuberculosis (285 aa) fasta scores; opt: 909, z-score: 1017.8, E(): 0, (57.3% identity in 267 aa overlap). nicotinate-nucleotide pyrophophorylase	Nicotinic acid phosphoribosyltransferase	Nicotinate-nucleotide pyrophosphorylase	NadC protein	Nicotinate-nucleotide pyrophosphorylase	Residues 15 to 311 of 311 are 100 pct identical to residues 1 to 297 of a 297 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285805.1 quinolinate phosphoribosyltransferase	Nicotinate-nucleotide pyrophosphorylase	NadC; nicotinate-nucleotide pyrophosphorylase (Carboxylating) quinolinate phosphoribosyltransferase	Nicotinate-nucleotide pyrophosphorylase	NadC protein	Probable nicotinate-nucleotide pyrophosphorylase (Carboxylating) quinolinate phosphoribosyltransferase (Decarboxylating) protein	Nicotinate-nucleotide pyrophosphorylase	nicotinate-nucleotide pyrophosphorylase	conserved gene nicotinate-nucleotide pyrophosphorylase	
HELPY01326	Quinolinate synthase A	quinolinate synthetase	quinolinate synthetase	Quinolinate synthetase complex, A subunit	Quinolinate synthase A	Quinolinate synthetase	Quinolinate synthase A	similar to AX064323-1|CAC25402.1| percent identity: 79 in 442 aa putative quinolinate synthetase	Quinolinate synthetase A	Quinolinate synthetase A	Quinolinate synthase A	Quinolinate synthetase	Quinolinate synthase A	SC6G10A.01, probable quinolinate synthetase (fragment), len: >279 aa; similar to C-terminal part of SW:NADA_ECOLI (EMBL:X12713) Escherichia coli quinolinate synthetase A NadA, 347 aa; fasta scores: opt: 216 z-score: 269.3 E(): 1.5e-07; 26.5% identity in 283 aa overlap.  Contains Pfam match to entry PF02445 NadA SC6G10.35, possible quinolinate synthetase (fragment), len: >154 aa; similar to many e.g. TR:O32063 (EMBL:Z99118) putative NadA, quinolinate synthetase from Bacillus subtilis (368 aa) fasta scores; opt: 442, z-score: 533.6, E(): 2e-22, (60.7% identity in 107 aa overlap) and SW:NADA_ECOLI NadA, quinolinate synthetase from Escherichia coli (347 aa) fasta scores; opt: 165, z-score: 204.7, E(): 0.00043, (37.0% identity in 100 aa overlap). putative quinolinate synthetase (fragment)	Quinolinate synthase A	Quinolinate synthase A	Quinolinate synthase A	Residues 1 to 347 of 347 are 99 pct identical to residues 1 to 347 of a 347 aa protein from Shigella flexneri gb: AAL26997.1 quinolinate synthetase A	Quinolinate synthetase A	Quinolinate synthetase A protein	Quinolinate synthetase A	Quinolinate synthase A	Quinolinate synthase A	Quinolinate synthase A	quinolinate synthetase	identified by match to protein family HMM PF02445; match to protein family HMM TIGR00550 quinolinate synthetase complex, A subunit	Quinolinate synthetase	Quinolinate synthase A	Quinolinate synthase	
HELPY01327	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Putative phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme 1	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Residues 1 to 322 of 322 are 99 pct identical to residues 1 to 322 of a 322 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290793.1 phosphatidylserine decarboxylase; phospholipid synthesis	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase	conserved gene phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	identified by match to protein family HMM PF02666; match to protein family HMM TIGR00163 phosphatidylserine decarboxylase	InterProMatches:IPR005221 phosphatidylserine decarboxylase Psd	Phosphatidylserine decarboxylase proenzyme	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phosphatidylserine decarboxylase	phosphatidylserine decarboxylase	similar to Salmonella typhi CT18 phosphatidylserine decarboxylase proenzyme phosphatidylserine decarboxylase proenzyme	Similar to Chlamydia pneumoniae phosphatidylserine decarboxylase proenzyme Psd or PsdD or CPN0839 or CP1030 SWALL:Q9Z767 (EMBL:AE001664) (301 aa) fasta scores: E(): 2.6e-85, 66.89% id in 299 aa, and to Chlamydia muridarum phosphatidylserine decarboxylase proenzyme Psd or TC0072 SWALL:Q9PLM7 (EMBL:AE002274) (301 aa) fasta scores: E(): 7.1e-59, 50.68% id in 294 aa putative phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	
HELPY01328	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein similar to HP1358 hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative periplasmic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01329	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein similar to HP1359 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01330	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	Putative 4-hydroxybenzoate-octaprenyl transferase	4-hydroxybenzoate octaprenyltransferase	SCD69.11, probable octaprenyltransferase, len: 301 aa; similar to TR:AAF10428 (EMBL:AE001939) Deinococcus radiodurans 4-hydroxybenzoate octaprenyltransferase DR0851, 313 aa; fasta scores: opt: 794 z-score: 949.5 E(): 0; 44.7% identity in 302 aa overlap and to SW:UBIA_ECOLI (EMBL:M93136) Escherichia coli 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) UbiA, 290 aa; fasta scores: opt: 299 z-score: 362.7 E(): 9.7e-13; 27.9% identity in 276 aa overlap. Contains Pfam match to entry PF01040 UbiA, UbiA prenyltransferase family. Contains also possible hydrophobic membrane spanning regions putative octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE	4-hydroxybenzoate-octaprenyl transferase	4-hydroxybenzoate octaprenyltransferase	Residues 1 to 290 of 290 are 99 pct identical to residues 1 to 290 of a 290 aa protein from Escherichia coli O157:H7 ref: NP_313050.1 4-hydroxybenzoate-octaprenyltransferase	4-hydroxybenzoate octaphenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	UbiA protein	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	Similar to 4-hydroxybenzoate-octaprenyltransferase hypothetical protein	conserved gene 4-hydroxybenzoate octaprenyltransferase UbiA	Similar to 4-hydroxybenzoate-octaprenyltransferase hypothetical protein	4-hydroxybenzoate-octaprenyl transferase	4-hydroxybenzoate octaprenyltransferase	identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475 4-hydroxybenzoate octaprenyltransferase, putative	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	IPR000537: UbiA prenyltransferase p-hydroxybenzoate: octaprenyltransferase	
HELPY01331	Competence locus E	identified by similarity to OMNI:NTL01HP01269; match to protein family HMM PF03772; match to protein family HMM TIGR00360 ComEC/Rec2 family protein	Putative uncharacterized protein	DNA transfer protein	ComEC/Rec2-related protein	competence locus E	ComEC/Rec2 family protein identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360	DNA transfer protein ComE (P51973) Competence protein comE3, DNA transfer protein High confidence in function and specificity	DNA uptake protein	DNA uptake protein	Putative integral membrane protein	Competence locus E	Anthranilate synthase component I and chorismate binding protein	ComEC/Rec2 family protein	ComEC/Rec2 family protein	Competence locus E	Conserved hypothetical membrane protein	Competence locus E	Putative uncharacterized protein	Competence locus E ComE3	Putative DNA competence protein; putative membrane protein	
HELPY01332	Replicative DNA helicase	replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase	REPLICATIVE DNA HELICASE	Replicative DNA helicase	Putative replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase	CDS_ID OB3460 replicative DNA helicase	REPLICATIVE DNA HELICASE	similar to AL049826-33|CAB42739.1| percent identity: 55 in 474 aa putative replicative DNA helicase	replicative DNA helicase (dnaB)	Replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase, DNAC	Replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase	DNA replication priming helicase	Replicative DNA helicase	SCH24.33, dnaB, probable replicative DNA helicase, len: 491 aa; similar to many e.g. SW:DNAB_ECOLI (EMBL:K01174), DnaB, Escherichia coli replicative DNA helicase (471 aa), fasta scores; opt: 1144 z-score: 1233.0 E(): 0, 38.6% identity in 461 aa overlap. The position of the putative start codon is suggested with reference to GC frame plot and a potential RBS. Contains Pfam match to entry PF00772 DnaB, DnaB-like helicase, score 558.50, E-value 4.4e-164 and PS00017 ATP/GTP-binding site motif A (P-loop). Contains probable helix-turn-helix motif at aa 392-413 (Score 982, +2.53 SD) putative replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase	DnaC protein	Replicative DNA helicase	Residues 1 to 471 of 471 are 100 pct identical to residues 1 to 471 of a 471 aa protein from Escherichia coli K12 ref: NP_418476.1 replicative DNA helicase; part of primosome	Replicative DNA Helicase	
HELPY01333	Uncharacterized protein HP_1363	hypothetical protein	hypothetical conserved protein	Putative uncharacterized protein	Conserved protein	Putative sugar kinase	Putative uncharacterized protein VPA1160	Putative uncharacterized protein yjeF	CDS_ID OB0620 hypothetical protein	Putative uncharacterized protein	hypothetical protein	YjeF-related protein	Sugar kinase	Putative uncharacterized protein yjeF	Predicted sugar kinase, N-terminal region- uncharacterized conserved protein	SC6G4.20c, unknown, len: 485 aa; similar to hypothetical proteins from many organisms e.g. Y115_MYCTU MTCY77.05 C (Rv3433c) (473 aa), fasta scores; opt: 563 z-score: 730.1 E(): 0, 48.5% identity in 489 aa overlap conserved hypothetical protein	Predicted sugar kinase	Predicted sugar kinase	Residues 8 to 522 of 522 are 99 pct identical to residues 1 to 515 of a 515 aa protein from Escherichia coli K12 ref: NP_418588.1 orf, conserved hypothetical protein	Predicted sugar kinase	Possible sugar kinase	YjeF-ralted probable carbohydrate kinase	Putative sugar kinase protein	similar to conserved hypothetical protein hypothetical protein	conserved gene sugar kinase	similar to conserved hypothetical protein hypothetical protein	hypothetical protein	identified by similarity to GB:AAQ18205.1; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YjeF family protein	Putative uncharacterized protein	
HELPY01334	Sensor protein	Sensor protein	two-component sensor histidine kinase	Sensor protein	Putative histidine kinase sensor protein	identified by match to PFAM protein family HMM PF00512 sensor histidine kinase CiaH	identified by similarity to SP:Q54955; match to protein family HMM PF00512; match to protein family HMM PF02518 sensor histidine kinase CiaH	Sensor protein	putative histidine kinase sensor protein	Hypothetical protein precursor	hypothetical protein similarity to COG0642 Signal transduction histidine kinase(Evalue: 1E-63)	signal-transducing protein, histidine kinase Specificity unclear	Two-component sensor histidine kinase	Sensor protein	Integral membrane sensor signal transduction histidine kinase precursor	Sensor protein	Sensor protein	Integral membrane sensor signal transduction histidine kinase precursor	Signal-transducing protein, histidine kinase	Histidine kinase	Integral membrane sensor signal transduction histidine kinase	Putative histidine kinase sensor protein	Sensor protein	Putative two-component sensor histidine kinase	Sensor protein	Sensor protein	Sensor protein	Sensor protein	Sensor protein	
HELPY01335	Response regulator	response regulator	putative two-component regulator Function unclear	Two component transcriptional regulator, winged helix family	Two-component response regulator	Putative transcriptional regulator	Response regulator	Response regulator	
HELPY01336	Type IIS restriction enzyme R protein	typeIIS restriction enzyme (P23191) Type IIS restriction enzyme MboII (EC 3.1.21.4) (Endonuclease MboII) (R.MboII) High confidence in function and specificity	
HELPY01337	Type IIS restriction enzyme M1 protein	DNA modification methyltransferase	Probable dna-methyltransferase (Dna-modification methylase) protein	Similar to Rhodobacter sphaeroides modification methylase RsrI RsrIM SWALL:MTR1_RHOSH (SWALL:P14751) (319 aa) fasta scores: E(): 3.3e-14, 32.82% id in 262 aa putative DNA methylase	DNA methylase N-4/N-6	DNA methylase N-4/N-6	DNA modification methylase-like	DNA methylase N-4/N-6	Modification methylase MjaV	DNA methylase N-4/N-6	DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6 domain protein KEGG: bur:Bcep18194_B2124 DNA methylase N-4/N-6	DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6 domain protein KEGG: bcn:Bcen_4408 DNA methylase N-4/N-6	type IIS restriction enzyme M1 protein fragment 2 (P23192) Modification methylase MboII (EC 2.1.1.72) (Adenine-specific methyltransferase MboII) (M.MboII) High confidence in function and specificity	Putative modification methylase	DNA modification methylase	Putative DNA-METHYLTRANSFERASE	Putative DNA-methyltransferase	DNA modification methylase	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	Site-specific DNA-methyltransferase	DNA methylase	Adenine/cytosine-specific DNA methylase	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	Putative uncharacterized protein	DNA-METHYLTRANSFERASE (DNA-MODIFICATION METHYLASE) PROTEIN; Adenine-specific methyltransferase, N4/N6-methyltransferase family	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	
HELPY01338	Type IIS restriction enzyme M2 protein	Putative modification methylase	not found in other Sulfolobus modification methylase	modification methylase	DNA modification methylase	DNA methylase cytoplasmic protein	DNA methylase cytoplasmic protein	DNA methylase N-4/N-6 domain protein	modification methylase mjai (Q58392) Modification methylase MjaI (EC 2.1.1.113) (N-4 cytosine-specific methyltransferase MjaI) (M.MjaI) High confidence in function and specificity	DNA modification methylase	DNA methylase N-4/N-6 domain protein	Site-specific DNA-methyltransferase	Site-specific DNA-methyltransferase	DNA binding domain protein, excisionase family	DNA methylase N-4/N-6 domain protein	DNA methylase	Putative DNA methylase	MthZ	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein	DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sbl:Sbal_3617 DNA methylase N-4/N-6 domain- containing protein	

HELPY01339	Type III restriction enzyme M protein	
HELPY01340	Type III restriction enzyme R protein	type III restriction enzyme R protein	Type III restriction protein res subunit	Type III restriction protein res subunit	Putative type III restriction enzyme R protein	Putative uncharacterized protein	Type III restriction enzyme, res subunit	Type III restriction-modification system restriction subunit	Type III restriction protein res subunit	Type III restriction enzyme R protein	Type III restriction enzyme R protein	Type III restriction protein res subunit	Type III restriction enzyme R protein	Type III restriction protein res subunit	Type III restriction protein res subunit	Type III R-M system restriction enzyme	
HELPY01341	Rod shape-determining protein	Rod shape-determining protein MreC	Putative	Putative periplasmic protein	rod shape-determining protein	rod shape-determining protein MreC identified by match to protein family HMM PF04085	rod shape-determining protein (P44475) Rod shape-determining protein mreC Function unclear	rod shape-determining protein MreC identified by match to protein family HMM PF04085	Cell shape-determining protein MreC	Rod shape-determining protein MreC	Putative periplasmic protein	Rod shape-determining protein MreC	Rod shape-determining protein MreC	Rod shape-determining protein MreC	Rod shape-determining protein MreC	Rod shape-determining protein	Rod shape-determining protein	Rod shape-determining protein MreC	Rod shape-determining protein MreC	Rod shape-determining protein	
HELPY01342	Rod shape-determining protein	cell-shape determining protein MreB homolog	cell-shape determining protein	Rod shape-determining protein MreB	Rod shape-determining protein MreB	Regulator of ftsI, penicillin binding protein 3, septation function	CDS_ID OB2053 rod shape-determining protein	Probable rod shape-determining protein mreB	Rod shape-determining protein MreB	Rod shape-determining protein	MreB	Cell-shape determining protein	Actin-like protein	SCC88.22c mreB, rod shape-determining protein, len: 343 aa; identical to previously sequenced TR:O33619 (EMBL:Y14206) Streptomyces coelicolor MreB protein, 342 aa and similar to SW:MREB_BACSU (EMBL:M95582) Bacillus subtilis rod shape-determining protein MreB, 337 aa; fasta scores: opt: 1346 z-score: 1516.0 E(): 0; 63.0% identity in 330 aa overlap rod shape-determining protein	HSP70 class molecular chaperones involved in cell morphogenesis	Actin-like ATPase involved in cell morphogenesis	ROD SHAPE-DETERMINING PROTEIN MREB	MreB protein	MreB	Residues 6 to 372 of 372 are 99 pct identical to residues 1 to 367 of a 367 aa protein from Escherichia coli O157:H7 ref: NP_312150.1 regulator of ftsI	Rod Shape Protein-Sugar Kinase	Rod shape-determining protein MreB	Heat shock protein hsp70:Cell shape determining protein MreB/Mrl	MreB protein	Probable rod shape-determining protein	Rod shape-determining protein MreB	Rod shape-determining protein MreB	conserved gene rod shape determining protein MreB	Rod shape-determining protein MreB	
HELPY01343	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein)	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	CDS_ID OB2077; class III heat-shock protein ATP-dependent Clp protease ATP-binding subunit	similar to X95306-1|CAA64618.1| percent identity: 61 in 426 aa putative ATP-dependent Clp protease ATP-binding subunit	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	SCC80.02c, clpX, ATP dependent Clp Protease ATP binding subunit, len: 428 aa; highly similar to SW:CLPX_BACSU (EMBL:X95306) Bacillus subtilis ATP-dependent Clp protease ATP-binding subunit ClpX, 420 aa; fasta scores: opt: 1786 z-score: 1870.3 E(): 0; 65.8% identity in 418 aa overlap. Contains Pfam match to entry PF00004 AAA, ATPases associated with various cellular activities (AAA) and match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) ATP dependent Clp Protease ATP binding subunit	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	
HELPY01344	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-(Acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Probable acyl-(Acyl-carrier-protein)-UDP-N- acetylglucosamine o-acyltransferase	acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-acyl carrier protein-UDP-N-acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-carrier-protein	Acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase	Residues 1 to 262 of 262 are 99 pct identical to residues 1 to 262 of a 262 aa protein from Escherichia coli K12 ref: NP_414723.1 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	UDP-N-acetylglucosamine acyltransferase	identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase	identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-(Acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylglucosamine acyltransferase	IPR001451: Bacterial transferase hexapeptide repeat UDP-N-acetylglucosamine acetyltransferase	
HELPY01345	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	hydroxymyristoyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	CDS_ID OB2946 hydroxymyristoyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	Acyl carrier protein	Residues 32 to 182 of 182 are 99 pct identical to residues 1 to 151 of a 151 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285874.1 (3R)-hydroxymyristol acyl carrier protein dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein]dehydratase	conserved gene (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein]dehydratase	
HELPY01346	Flagellar assembly factor fliW 2	Flagellar assembly factor fliW 1	Putative	Flagellar assembly factor fliW	hypothetical protein	conserved hypothetical protein similar to HP1377 Function unclear	conserved hypothetical protein	Flagellar assembly factor fliW	Flagellar assembly factor FliW	Putative uncharacterized protein	Flagellar assembly protein FliW	Putative uncharacterized protein	Putative uncharacterized protein	protein of unknown function DUF180 PFAM: protein of unknown function DUF180; KEGG: cth:Cthe_2240 flagellar assembly protein FliW	Putative uncharacterized protein	Flagellar assembly protein FliW	Putative uncharacterized protein	protein of unknown function DUF180 PFAM: protein of unknown function DUF180; KEGG: cno:NT01CX_1874 flagellar assembly protein FliW	conserved hypothetical protein	
HELPY01347	Competence lipoprotein	Putative uncharacterized protein comL	Putative	DNA uptake lipoprotein-like	competence lipoprotein	conserved hypothetical protein	competence lipoprotein (Q9L7A6) Hypothetical lipoprotein HD0470 precursor High confidence in function and specificity	lipoprotein, putative	Putative uncharacterized protein	Putative uncharacterized protein	Putative lipoprotein	Putative lipoprotein	Conserved hypothetical membrane protein	Putative uncharacterized protein	Putative lipoprotein	Competence lipoprotein	Competence lipoprotein	Competence lipoprotein	Putative lipoprotein	Conserved hypothetical lipoprotein	Competence lipoprotein ComL	Putative uncharacterized protein	
HELPY01348	ATP-dependent protease La	ATP-dependent Lon protease	ATP-dependent protease La	ATP-dependent protease La	ATP-dependent protease La	ATP-dependent Lon protease	ATP-dependent protease La	ATP-dependent protease La	CDS_ID OB2076; class III heat-shock protein ATP-dependent proteinase La 1	HEAT SHOCK ATP-DEPENDENT PROTEASE	ATP-dependent protease La	ATP-dependent protease Lon	ATP-dependent protease La	ATP-dependent endopeptidase	ATP-dependent protease La	ATP-dependent protease La	ATP-dependent protease La	ATP-dependent protease La	ATP-dependent protease La	ATP-dependent protease La	SCCB12.09, lon, ATP-dependent protease, len: 807 aa; similar to SW:LON_MYCSM (EMBL:AF030688) Mycobacterium smegmatis ATP-dependent protease LA (EC 3.4.21.53) Lon, 779 aa; fasta scores: opt: 2550 z-score: 2489.6 E(): 0; 64.7% identity in 785 aa overlap. Contains Pfam matches to entries PF02190 LON, ATP-dependent protease La (LON) domain and PF00004 AAA, ATPases associated with various cellular activities (AAA) and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS01046 ATP-dependent serine proteases, lon family, serine active site ATP-dependent protease	ATP-dependent protease La	ATP-dependent Lon protease, bacterial type	ATP-dependent protease lon	ATP-dependent protease La	Residues 1 to 799 of 799 are 99 pct identical to residues 1 to 799 of a 799 aa protein from Escherichia coli gb: AAB40195.1 ATP-dependent protease LA	ATP-dependent protease La	Lon; ATP-dependent protease la protein	ATP-dependent protease La	
HELPY01349	Prephenate dehydrogenase	prephenate dehydrogenase	AROGENATE DEHYDROGENASE , PREPHENATE DEHYDROGENASE	Putative prephenate dehydrogenase	CDS_ID OB1781 prephenate dehydrogenase	similar to AX064169-1|CAC25325.1| percent identity: 78 in 340 aa putative cyclohexadienyl dehydrogenase	cyclohexadienyl dehydrogenase	Putative cyclohexadienyl dehydrogenase	Prephenate dehydrogenase	Prephenate dehydrogenase	Prephenate dehydrogenase	SCE8.14c, probable oxidoreductase, len: 284 aa; similar to many e.g. TR:O52817 (EMBL:AJ223999) protein similar to prephenate dehydrogenase from the vancomycin biosynthesis of Amycolatopsis orientalis (367 aa) fasta scores; opt: 757, z-score: 865.8, E(): 0, (49.8% identity in 283 aa overlap) and SW:TYRA_BACSU prephenate dehydrogenase from Bacillus subtilis (372 aa) fasta scores; opt: 251, z-score: 291.1, E(): 6.6e-09, (28.3% identity in 251 aa overlap). putative oxidoreductase	Prephenate dehydrogenase	TyrA protein	Prephenate dehydrogenase / cyclohexadienyl dehydrogenase	Prephenate (Chorismate) dehydrogenase	Prephenate dehydrogenase	Prephenate dehydrogenase	Putative prephenate dehydrogenase oxidoreductase protein	Prephenate dehydrogenase	identified by match to protein family HMM PF01842; match to protein family HMM PF02153 prephenate dehydrogenase	prephenate dehydrogenase	identified by similarity to SP:Q04983; match to protein family HMM PF02153 prephenate dehydrogenase	Probable prephenate dehydrogenase	prephenate dehydrogenase	Prephenate dehydrogenase	Prephenate dehydrogenase	identified by match to protein family HMM PF02153 prephenate dehydrogenase	Prephenate dehydrogenase protein	



HELPY01353	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Conserved hypothetical protein. Conserved to HPyl.Conserved hypothetical protein. Conserved to HPyl. conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01354	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase	FRUCTOSE-1,6-BISPHOSPHATASE	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase class 1	Residues 22 to 353 of 353 are 100 pct identical to residues 1 to 332 of a 332 aa protein from Escherichia coli K12 ref: NP_418653.1 fructose-bisphosphatase	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase class 1	Fructose-1,6-bisphosphatase class 1	fructose-1,6-bisphosphatase I	Fructose-1,6-bisphosphatase class 1	identified by match to protein family HMM PF00316 fructose-1,6-bisphosphatase	IPR000146: Inositol phosphatase/fructose-1,6-bisphosphatase fructose-bisphosphatase	similar to Salmonella typhi CT18 fructose-1,6-bisphosphatase fructose-1,6-bisphosphatase	Fructose-1,6-bisphosphatase class 1	similar to BRA0872, fructose-1-6-bisphosphatase Fbp, fructose-1-6-bisphosphatase	Fructose-1,6-bisphosphatase	Fructose-1,6-bisphosphatase class 1	Putative fructose-1,6-bisphosphatase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme fructose-1,6-bisphosphatase	fructose-1,6-bisphosphatase	D-fructose-1,6-bisphosphate 1-phosphohydrolase; FBPase; Similar to: HI1645, F16P_HAEIN fructose-1,6-bisphosphatase	L2385.01, len = 350 aa, probably fructose-1,6-bisphosphatase, cytosolic; predicted pI = 8.9055; contains PROSITE PS00124 Fructose-1-6-bisphosphatase active site, Pfam match to entry PF00316 FBPase, Fructose-1-6-bisphosphatase; similar to many, e.g. F16Q_SPIOL, fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.1) (341 aa, Spinacia oleracea, EMBL: X61690, CAA43860); Fasta scores: E():4e-57, 45.930% identity (47.734% ungapped) in 344 aa overlap, (aa 2-341 of L2385.01, aa 6-340 of F16Q_SPIOL) fructose-1,6-bisphosphatase, cytosolic	Fructose-1, 6-biphosphatase Fbp protein	
HELPY01355	Ribulose-phosphate 3-epimerase	ribulose-phosphate 3-epimerase	ribulose-phosphate 3-epimerase	Putative ribulose-5-phosphate 3-epimerase	Putative ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	D-ribulose-5-phosphate 3 epimerase	RIBULOSE-PHOSPHATE 3-EPIMERASE	Ribulose-5-phosphate 3-epimerase	Putative ribulose-phosphate-3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	CDS_ID OB1511 ribulose-phosphate 3-epimerase	similar to AX064879-1|CAC25679.1| percent identity: 83 in 216 aa putative ribulose-phosphate 3-epimerase	Putative ribulose-phosphate 3-epimerase	pentose(ribulose)-5-phosphate-3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-5-phosphate-3-epimerase	Pentose-5-phosphate-3-epimerase, YLOR B.subtilis ortholog	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Pentose-5-phosphate-3-epimerase	D-ribulose-5-phosphate 3 epimerase	SCL6.21c, rpe, ribulose-phosphate 3-epimerase, len: 228 aa; highly similar to SW:RPE_BACSU (EMBL:Y13937) Bacillus subtilis ribulose-phosphate 3-epimerase (EC 5.1.3.1) Rpe, 217 aa; fasta scores: opt: 659 z-score: 776.1 E(): 0; 48.1% identity in 212 aa overlap. Contains Pfam match to entry PF00834 Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family and matches to Prosite entries PS01085 Ribulose-phosphate 3-epimerase family signature 1 and PS01086 Ribulose-phosphate 3-epimerase family signature 2 ribulose-phosphate 3-epimerase	
HELPY01356	DNA polymerase III epsilon subunit	Exonuclease	DNA polymerase III epsilon subunit	DNA polymerase III Function unclear	DNA polymerase III, epsilon subunit	DNA polymerase III	Nickel transport permease component NikD	DNA polymerase III subunit epsilon	DNA polymerase III subunit epsilon	DNA polymerase III epsilon subunit	DNA polymerase III, epsilon subunit	DNA polymerase III epsilon subunit	DNA polymerase III epsilon subunit	




HELPY01360	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Conserved hypothetical protein. Conserved to HPyl.Conserved hypothetical protein. Conserved to HPyl. conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01361	Fibronectin/fibrinogen-binding protein	Fibronectin/fibrinogen-binding protein, internal deletion	identified by similarity to GP:19110786; match to protein family HMM PF05670 fibronectin/fibrinogen binding protein, putative	Fibronectin/fibrinogen-binding protein	Putative	Fibronectin/fibrinogen-binding protein, putative	Putative uncharacterized protein	fibronectin/fibrinogen-binding protein	Fibronectin/fibrinogen-binding protein, putative	putative fibronectin/fibrinogen-binding protein identified by match to protein family HMM PF05670	fibronectin/fibrinogen-binding protein Conserved hypothetical protein. Conserved to HPyl.Conserved hypothetical protein. Conserved to HPyl. hypothetical protein	Fibronectin/fibrinogen binding protein	fibronectin/fibrinogen binding protein, putative identified by match to protein family HMM PF05670	Fibronectin/fibrinogen binding protein	Fibronectin/fibrinogen binding protein	Fibronectin/fibrinogen-binding protein	Putative fibronectin/fibrinogen binding protein	Possible fibronectin/fibrinogen-binding protein	Fibronectin/fibrinogen-binding protein, putative	Fibronectin/fibrinogen-binding protein	Putative fibronectin/fibrinogen-binding protein	Fibronectin/fibrinogen-binding protein	Adherence and virulence protein A	Fibronectin-binding protein	Fibronectin/fibrinogen-binding protein	Fibronectin-binding protein-like protein A	Fibronectin/fibrinogen-binding protein, putative	Fibronectin/fibrinogen-binding protein	Fibronectin/fibrinogen-binding protein, putative	
HELPY01362	DNA repair protein recN	DNA repair protein	DNA repair protein (recombination protein N)	Putative DNA repair protein	Putative DNA repair and genetic recombination protein	DNA repair protein RecN	DNA repair protein RecN	DNA REPAIR PROTEIN RECN	DNA repair protein RecN	DNA repair protein RecN	DNA repair protein	Protein used in recombination and DNA repair	CDS_ID OB1874; recombination protein N DNA repair and genetic recombination	similar to Z95117-12|CAB08275.1| percent identity: 50 in 576 aa putative DNA repair protein RecN	Putative DNA repair protein RecN	DNA repair protein RecN	DNA repair protein RecN	DNA repair protein RecN	DNA repair protein	Putative DNA repair protein RecN	DNA repair protein recN, ATPase	DNA repair protein RecN	DNA repair protein recN	SCI51.20c, possible DNA repair protein, len: 572 aa; similar to SW:RECN_ECOLI (EMBL:Y00357), recN, Escherichia coli DNA repair protein (553 aa), fasta scores; opt: 425 z-score: 428.6 E(): 3.6e-17, 33.1% identity in 568 aa overlap and to recN homologues.  Contains probable coiled-coils from 155 to 189 (35 residues) (Max score: 1.472, probability 0.91) and from 336 to 376 (41 residues) (Max score: 1.517, probability 0.96). Contains PS00017 ATP/GTP-binding site motif A (P-loop) putative DNA repair protein	ATPases involved in DNA repair	Recombination and DNA repair protein	DNA repair protein RecN	DNA repair protein recN	DNA repair and genetic recombination	
HELPY01363	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	CDS_ID OB2196 hypothetical protein	similar to AL109848-21|CAB52845.1| percent identity: 52 in 302 aa conserved hypothetical protein	Probable inorganic polyphosphate/ATP-NAD kinase	hypothetical protein	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	SCI51.21c, probable inorganic polyphosphate/ATP-NAD kinase, len: 301 aa; similar to many bacterial hypothetical proteins e.g. TR:O33196 (EMBL:Z98268) Mycobacterium tuberculosis hypothetical protein (307 aa), fasta scores; opt: 975 z-score: 1090.7 E(): 0, 53.6% identity in 302 aa overlap. Highly similar to SW:PPNK_MYCTU (EMBL:AB044336) Mycobacterium tuberculosis inorganic polyphosphate/ATP-NAD kinase (EC 2.7.1.23) (poly(P)/ATP NAD kinase) PpnK, 307 aa; fasta scores: opt: 975 Z-score: 1068.4 E(): 7e-52; 53.642% identity in 302 aa overlap inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Residues 1 to 292 of 292 are 100 pct identical to residues 1 to 292 of a 292 aa protein from Escherichia coli K12 ref: NP_417105.1 orf, conserved hypothetical protein	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Similar to probable inorganic polyphosphate/ATP-NAD kinase hypothetical protein	conserved gene sugar kinase	Similar to probable inorganic polyphosphate/ATP-NAD kinase hypothetical protein	Probable inorganic polyphosphate/ATP-NAD kinase	
HELPY01364	Outer membrane protein	Putative OUTER MEMBRANE PROTEIN	outer membrane protein HorL	outer membrane protein 33 hypothetical protein	Putative outer membrane protein	Outer membrane protein	Outer membrane protein HorL	
HELPY01365	Putative uncharacterized protein	conserved hypothetical protein	
HELPY01366	Putative uncharacterized protein	conserved hypothetical protein fragment 1 Region start changed from 770282 to 770210 (72 bases)	Uncharacterized conserved protein	
HELPY01367	Alanine dehydrogenase	Putative L-alanine dehydrogenase	Alanine dehydrogenase	Alanine dehydrogenase	Alanine dehydrogenase	Probable alanine dehydrogenase	alanine dehydrogenase	Alanine dehydrogenase	Alanine dehydrogenase	SCI51.13c, probable L-alanine dehydrogenase, len: 371 aa; similar to many alanine dehydrogenases e.g.  SW:DHA_MYCTU (EMBL:X63069), ald, Mycobacterium tuberculosis L-alanine dehydrogenase (371 aa), fasta scores; opt: 1569 z-score: 1722.1 E(): 0, 65.8% identity in 371 aa overlap. Contains Pfam match to entry PF01262 AlaDh_PNT, Alanine dehydrogenase/pyridine nucleotide transhydrogenase and PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1 putative L-alanine dehydrogenase	Alanine dehydrogenase	Alanine dehydrogenase	Lin1614 protein	Alanine dehydrogenase	Similar to alanine dehydrogenase hypothetical protein	conserved gene alanine dehydrogenase	Similar to alanine dehydrogenase hypothetical protein	identified by similarity to EGAD:15508; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 alanine dehydrogenase	alanine dehydrogenase	identified by similarity to SP:P30234; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 alanine dehydrogenase	Alanine dehydrogenase	Alanine dehydrogenase	Alanine dehydrogenase	Alanine dehydrogenase	Ald	Alanine dehydrogenase	Alanine dehydrogenase	Mb2803, aldb, len: 239 aa. Equivalent to 3' end of Rv2780, len: 371 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 239 aa overlap). ald, secreted L-alanine dehydrogenase (EC 1.4.1.1) (40 kd antigen) (see first citations below); equivalent to Q9CBV6|ALD|ML1532 L-ALANINE DEHYDROGENASE from Mycobacterium leprae (371 aa), FASTA scores: opt: 2081, E(): 4e-115, (85.45% identity in 371 aa overlap). Also highly similar to others e.g. Q9S227|SCI51.13c from Streptomyces coelicolor (371 aa), FASTA scores: opt: 1575, E(): 2.3e-85, (66.05% identity in 371 aa overlap); Q9K827|BH3180 from Bacillus halodurans (371 aa), FASTA scores: opt: 1341, E(): 1.4e-71, (56.45% identity in 372 aa overlap); Q9RT70|DR1895 from Deinococcus radiodurans (390 aa), FASTA scores: opt: 1319, E(): 2.8e-70, (54.2% identity in 371 aa overlap); etc. Contains PS00836 and PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1 and 2.  REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv, ald exists as a single gene. In Mycobacterium bovis, a frameshift due to a single base deletion (a-*) splits ald into 2 parts, alda and aldb. SECRETED L-ALANINE DEHYDROGENASE ALDb [SECOND PART] (40 KDA ANTIGEN) (TB43)	stage V sporulation protein N, alanine dehydrogenase	
HELPY01368	Arginase	Arginase	Arginase	Probable arginase protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark arginase	Arginase	Arginase	arginase	Arginase	Ortholog of S. aureus MRSA252 (BX571856) SAR2255 arginase	arginase	arginase, putative	arginase	arginase	Arginase	Similar to Bacillus caldovelox arginase RocF SW:ARGI_BACCD (P53608) (299 aa) fasta scores: E(): 3.1e-57, 53% id in 300 aa, and to Bacillus subtilis arginase RocF SW:ARGI_BACSU (P39138) (296 aa) fasta scores: E(): 4e-55, 51.66% id in 300 aa arginase	arginase	identified by similarity to EGAD:14086; match to protein family HMM PF00491; match to protein family HMM TIGR01229 arginase	similar to gi|57286368|gb|AAW38462.1| [Staphylococcus aureus subsp. aureus COL], percent identity 70 in 300 aa, BLASTP E(): e-122 arginase	arginase, liver [Source:HGNC Symbol;Acc:663]	arginase identified by match to protein family HMM PF00491; match to protein family HMM TIGR01229	arginase	putative arginase similarity:fasta; with=UniProt:Q44331_9RHIZ (EMBL:AT39262); Agrobacterium tumefaciens.; arcA; Arginase.; length=306; id 55.229; 306 aa overlap; query 8-310; subject 3-305 similarity:fasta; with=UniProt:Q92LN4_RHIME (EMBL:SME591792); Rhizobium meliloti (Sinorhizobium meliloti).; PROBABLE ARGINASE PROTEIN (EC 3.5.3.1).; length=307; id 80.719; 306 aa overlap; query 6-311; subject 2-307	arginase TIGRFAM: arginase: (1.4e-115) PFAM: Arginase/agmatinase/formiminoglutamase: (2.9e-105) KEGG: dra:DR0651 arginase, ev=1e-137, 81% identity	arginase	arginase	arginase	arginase protein similar to argI1 (SMc03091) [Sinorhizobium meliloti] Similar to swissprot:Q92LN4 Putative location:bacterial cytoplasm Psort-Score: 0.0671; go_function: hydrolase activity [goid 0016787]; go_function: catalytic activity [goid 0003824]; go_function: arginase activity [goid 0004053]; go_process: arginine catabolism [goid 0006527]	arginase	
HELPY01369	Iron(III) dicitrate transport protein	Putative IRON(III) DICITRATE TRANSPORT PROTEIN	iron(III) dicitrate transport protein	iron(III) dicitrate transport protein (P13036) Iron(III) dicitrate transport protein fecA precursor High confidence in function and specificity	TonB-dependent receptor	TonB-dependent siderophore receptor precursor	TonB-dependent receptor precursor	Iron(III) dicitrate transport protein	Iron (III) dicitrate transport protein	
HELPY01370	Putative uncharacterized protein	Putative uncharacterized protein	Zinc metalloprotease	Putative	Predicted metal-dependent hydrolase	conserved hypothetical protein	Putative predicted metal-dependent hydrolase protein	Weakly similar to Zinc metalloprotease hypothetical protein	conserved gene zinc metalloprotease	Weakly similar to Zinc metalloprotease hypothetical protein	zinc metalloprotease	InterProMatches:IPR002725 hypothetical protein	Putative	Putative predicted metal-dependent hydrolase	COG1451 zinc metalloprotease	Similar to Methanosarcina mazei zinc metalloprotease MM2291 SWALL:Q8PUP1 (EMBL:AE013471) (238 aa) fasta scores: E(): 6.1e-32, 39.28% id in 224 aa, and to Helicobacter pylori hypothetical protein Hp1401 SWALL:O25951 (EMBL:AE000640) (235 aa) fasta scores: E(): 9.5e-31, 38.22% id in 225 aa, and to Helicobacter pylori J99 putative jhp1425 SWALL:Q9ZJ89 (EMBL:AE001565) (235 aa) fasta scores: E(): 5.2e-30, 36.6% id in 224 aa conserved hypothetical protein	Predicted metal-dependent hydrolase	conserved hypothetical protein	hypothetical protein	Hypothetical zinc-dependent protease	hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx; COG1451 conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx; COG1451 conserved hypothetical protein	identified by match to protein family HMM PF01863 conserved hypothetical protein	Protein of unknown function DUF45	Protein of unknown function DUF45	conserved hypothetical protein	protein of unknown function DUF45	Putative uncharacterized protein	
HELPY01371	Type I restriction enzyme R protein	Type I restriction-modification system, R subunit	Lin0521 protein	Restriction enzymes type I helicase subunits and related helicases	Type I restriction-modification system endonuclease	InterProMatches:IPR004473; Molecular Function: ATP binding (GO:0005524), Molecular Function: type 1 site-specific deoxyribonuclease activity (GO:0009035), Biological Process: DNA restriction (GO:0009307) putative Type I site-specific deoxyribonuclease HsdR	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark type I restriction-modification system endonuclease	TYPE I RESTRICTION ENZYME	Possible type I restriction enzyme	Type I restriction-modification system, R subunit	type I restriction-modification system restriction subunit	Similar to Methanosarcina mazei type I restriction-modification system restriction subunit MM2292 SWALL:Q8PUP0 (EMBL:AE013471) (1042 aa) fasta scores: E(): 4.4e-72, 42.64% id in 1020 aa, and to Helicobacter pylori J99 type I restriction enzyme HsdR_3 or jhp1424 SWALL:Q9ZJ90 (EMBL:AE001565) (991 aa) fasta scores: E(): 2.2e-64, 37.51% id in 1069 aa, and to Helicobacter pylori type I restriction enzyme R protein hp1402 SWALL:O25952 (EMBL:AE000640) (993 aa) fasta scores: E(): 1.1e-60, 37.08% id in 1049 aa, and to Klebsiella pneumoniae HsdR protein SWALL:Q48426 (EMBL:U33094) (1013 aa) fasta scores: E(): 1.3e-57, 41.47% id in 1056 aa putative type I restriction enzyme	HsdR protein	Putative type I restriction enzyme	putative DNA restriction-modification system, restriction enzyme	Type I site-specific deoxyribonuclease HsdR	Type I site-specific deoxyribonuclease HsdR	type I site-specific deoxyribonuclease, HsdR family	Type I site-specific deoxyribonuclease HsdR	Type I site-specific restriction-modification system, R (restriction) subunit split gene	putative type I restriction-modification system HsdR similarity:fasta; SWALL:P95512 (EMBL:U46781); Pasteurella haemolytica; HsdR; hsdR; length 1055 aa; 1026 aa overlap; query 17-1026 aa; subject 5-1014 aa similarity:fasta; SWALL:Q9P9Y1 (EMBL:AE004080); Xylella fastidiosa; type i restriction-modification system endonuclease; length 1058 aa; 1046 aa overlap; query 16-1061 aa; subject 18-1056 aa	type I site-specific deoxyribonuclease, HsdR family KEGG: dvu:DVU1703 type I restriction-modification enzyme, R subunit, ev=0.0, 59% identity TIGRFAM: type I site-specific deoxyribonuclease, HsdR family: (3.6e-110) PFAM: type III restriction enzyme, res subunit: (2.7e-13) protein of unknown function DUF450: (1.8e-39) SMART: DEAD/DEAH box helicase-like: (2.5e-08)	type I restriction enzyme R protein	Type I restriction-modification system, R subunit	type I restriction-modification system, R subunit identified by similarity to GB:AAM00850.1; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348	type I site-specific deoxyribonuclease, HsdR family	type I restriction-modification system restriction subunit	HsdR identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348	type I site-specific deoxyribonuclease, HsdR family	
HELPY01372	Type I restriction enzyme M protein	Type I restriction-modification system, M subunit	HsdM	TYPE I RESTRICTION ENZYME	Similar to Helicobacter pylori J99 type I restriction enzyme Hsdm_3 or jhp1423 SWALL:Q9ZJ91 (EMBL:AE001564) (815 aa) fasta scores: E(): 1.4e-78, 37.56% id in 905 aa, and to Helicobacter pylori type I restriction enzyme M protein hp1403 SWALL:O25953 (EMBL:AE000640) (817 aa) fasta scores: E(): 1.3e-75, 37.08% id in 906 aa, and to Methanosarcina mazei type I restriction-modification system specificity subunit Mm2294 SWALL:Q8PUN8 (EMBL:AE013471) (808 aa) fasta scores: E(): 1.2e-61, 41.34% id in 895 aa putative modification protein of type I restriction-modification system	putative DNA restriction-modification system, DNA methylase	identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497 type I restriction-modification system, M subunit	restriction-modification system, modification (methylase) subunit start codon not provided	type I restriction-modification system, M subunit	type I restriction enzyme M protein	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	Type I restriction-modification system, M subunit	N-6 DNA methylase	Type I restriction-modification system, M subunit	N-6 DNA methylase	Type I restriction-modification system, M subunit	N-6 DNA methylase	Type I restriction-modification system, M subunit	Type I restriction-modification system specificity subunit	Type I restriction-modification system, M subunit	Type I restriction-modification system methyltransferase subunit	Type I restriction-modification system, M subunit	Type I restriction enzyme M protein	Probable type I restriction-modification system protein, methyltransferase subunit	Type I restriction-modification system, M subunit	TypeI restriction enzyme M protein	


HELPY01375	Biotin synthase	biotin synthase	biotin synthase	Biotin synthase	Biotin synthase	BIOTIN SYNTHASE	Biotin synthase	Biotin synthase	similar to U31281-1|AAC44580.1| percent identity: 86 in 329 aa biotin synthase	Biotin synthase	Biotin synthase	Biotin synthase	Biotin synthase	Biotin synthase	Residues 1 to 346 of 346 are 99 pct identical to residues 1 to 346 of a 346 aa protein from Escherichia coli K12 ref: NP_415296.1 biotin synthesis, sulfur insertion?	Biotin synthase	Biotin synthase	Biotin synthase	Biotin synthase	Biotin synthase	Biotin synthase	conserved gene biotin synthase BioB	Biotin synthase	biotin synthetase	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 biotin synthase	Biotin synthase	Biotin synthase	Biotin synthase	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00433 biotin synthetase	
HELPY01376	Conserved hypothetical integral membrane protein	UPF0761 membrane protein yihY	CDS_ID OB0875 hypothetical protein	UPF0761 membrane protein CBU_1578	TRNA-processing ribonuclease BN	UPF0761 membrane protein VV1_0885	Lin1818 protein	Residues 1 to 290 of 290 are 99 pct identical to residues 1 to 290 of a 290 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290512.1 tRNA processing exoribonuclease BN	tRNA-processing ribonuclease BN	identified by similarity to SP:P32146; match to protein family HMM PF03631; match to protein family HMM TIGR00765 ribonuclease BN	conserved hypothetical protein	IPR004664: Ribonuclease BN tRNA processing exoribonuclease BN	TRNA-processing ribonuclease BN	Putative ribonuclease N	tRNA-processing ribonuclease BN	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 ribonuclease BN, putative	RNase BN; Similar to: HI0276, RBN_HAEIN tRNA processing ribonuclease BN	tRNA-processing ribonuclease BN Rbn protein	Ribonuclease BN, putative	Similar to RBN_ECOLI (P32146) tRNA processing ribonuclease BN from E. coli (290 aa). FASTA: opt: 535 Z-score: 578.5 E(): 2.5e-24 Smith-Waterman score: 535; 33.813 identity in 278 aa overlap tRNA processing ribonuclease BN	Ribonuclease BN	tRNA-processing ribonuclease BN	identified by similarity to SP:P32146; match to protein family HMM PF03631; match to protein family HMM TIGR00765 ribonuclease BN	ribonuclease BN	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 ribonuclease BN, putative	Ribonuclease BN	Code: S; COG: COG1295 tRNA processing exoribonuclease BN	Code: S; COG: COG1295 tRNA processing exoribonuclease BN	ribonuclease BN	


HELPY01377	Putative uncharacterized protein	
HELPY01377	Putative uncharacterized protein	
HELPY01378	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	SC6G9.04c, hypothetical protein, len: 565 aa; similar to TR:O34810 (EMBL:AE000641) Helicobacter pylori hypothetical protein (578 aa), fasta scores; opt: 391 z-score: 464.1 E(): 1.6e-18, 23.6% identity in 525 aa overlap and to several other hypothetical proteins from the same organism, with the highest similarity toward the N-terminus. The coding sequence has unusually low %G+C content hypothetical protein	Hypothetical protein	hypothetical protein	similar to unknown protein	Putative uncharacterized protein	Protein of unknown function DUF262 family identified by match to protein family HMM PF03235; match to protein family HMM PF07510	conserved hypothetical protein identified by similarity to GB:BAD77579.1; match to protein family HMM PF03235; match to protein family HMM PF07510	protein of unknown function DUF262	Hypothetical protein	conserved hypothetical protein fragment 2 Region start changed from 550041 to 549678 (363 bases)	protein of unknown function DUF262 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF KEGG: rpd:RPD_3945 protein of unknown function DUF262	conserved hypothetical protein identified by similarity to GB:BAD01926.1; match to protein family HMM PF03235; match to protein family HMM PF07510	protein of unknown function DUF262 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF KEGG: eca:ECA3659 hypothetical protein	Hypothetical protein	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	conserved hypothetical protein Code: S; COG: COG1479	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY01380	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01381	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01382	NADPH-dependent 7-cyano-7-deazaguanine reductase	hypothetical protein	hypothetical conserved protein	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	CDS_ID OB2210 hypothetical protein	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	identified by similarity to OMNI:SA0789; match to protein family HMM PF01227 conserved hypothetical protein	identified by match to protein family HMM PF01227 GTP cyclohydrolase family protein	conserved hypothetical protein	7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	identified by match to protein family HMM PF01227 GTP cyclohydrolase I family protein	Queuosine (Q) synthesis; Molecular Function: GTP cyclohydrolase I activity (GO:0003934), Biological Process: biosynthesis (GO:0009058) GTP cyclohydrolase I	GTP cyclohydrolase I	similar to BR1183, conserved hypothetical protein conserved hypothetical protein	conserved hypothetical protein	Putative	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0782 conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	NADPH-dependent 7-cyano-7-deazaguanine reductase	COG0780 probable GTP cyclohydrolase I	
HELPY01383	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	identified by similarity to OMNI:HP1414; match to protein family HMM PF02410; match to protein family HMM TIGR00090 conserved hypothetical protein	Putative uncharacterized protein TTHA1777	putative ACR, homolog of plant Iojap protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative	iojap protein family	Similar to Q83DY7 Iojap-related protein from Coxiella burnetii (116 aa). FASTA: opt: 326 Z-score: 425.2 E(): 8.6e-16 Smith-Waterman score: 326; 41.509 identity in 106 aa overlap. ORF ftt1100 conserved hypothetical protein	Putative ACR, homolog of plant Iojap protein	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 iojap domain protein	Iojap-related protein	Iojap-related protein	Iojap-related protein	identified by similarity to GB:AAM71388.1; match to protein family HMM PF02410; match to protein family HMM TIGR00090 iojap protein, homolog	Evidence 4 : Homologs of previously reported genes of unknown function conserved protein of unknown function	Iojap-related protein	Iojap-related protein	Iojap-related protein	hypothetical protein	Iojap-related protein	Iojap-related protein	conserved hypothetical protein Similar to Q83DY7 Iojap-related protein from Coxiella burnetii (116 aa). FASTA: opt: 326 Z-score: 425.2 E(): 8.6e-16 Smith-Waterman score: 326; 41.509 identity in 106 aa overlap. ORF ftt1100	putative iojap homolog identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090	Domain of unknown function DUF143:Iojap-related protein COG799 Uncharacterized homolog of plant Iojap protein [Function unknown]	conserved hypothetical protein Specificity unclear	conserved hypothetical protein Conserved hypothetical protein. Homology to NE0358 of Nitrosomonas europaea of 55% (trembl:Q82XC6).  Pfam:Domain of unknown function DUF143. This domain has no known function nor do any of the proteins that possess it.  The aligned region is approximately 100 amino acids long.  Tigrfam: TIGR00090 iojap-related protein. This model describes a strictly bacterial family of proteins related to iojap from plants. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids,but the plastid-encoded one,	
HELPY01384	tRNA dimethylallyltransferase	tRNA delta-2-isopentenylpyrophosphate	tRNA delta(2)-isopentenylpyrophosphate transferase (IPP transferase)	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	CDS_ID OB1634 tRNA isopentenylpyrophosphate transferase	similar to AX066695-1|CAC26575.1| percent identity: 80 in 300 aa putative tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA isopentenyltransferase	tRNA dimethylallyltransferase 1	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	SC4H2.12, miaA, probable tRNA delta(2)-isopentenylpyrophosphate transferase, len: 312 aa; similar to many e.g. SW:MIAA_ECOLI (EMBL:P16384) Escherichia coli tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) (316 aa), fasta scores; opt: 627 z-score: 781.4 E(): 0, 39.9% identity in 286 aa overlap.  Contains PS00017 ATP/GTP-binding site motif A (P-loop) putative tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	
HELPY01385	Lipopolysaccharide 1,2-glucosyltransferase	lipopolysaccharide 1,2-glucosyltransferase	lipopolysaccharide biosynthesis protein lipopolysaccharide 1,2-glucosyltransferase (rfaJ) High confidence in function and specificity	Lipopolysaccharide 1,2-glucosyltransferase	Lipopolysaccharide1,2-glucosyltransferase	Lipopolysaccharide 1,2-glucosyltransferase	


HELPY01386	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	conserved gene UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by match to protein family HMM PF01565; match to protein family HMM PF02215; match to protein family HMM PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by similarity to SP:Q9ZJJ4; match to protein family HMM PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase	InterProMatches:IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase	MurB COG0812 UDP-N-acetylmuramate dehydrogenase udp-n-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylmuramate dehydrogenase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	hypothetical protein, similar to UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by match to PFAM protein family HMM PF01565 UDP-N-acetylenolpyruvoylglucosamine reductase	
HELPY01387	Flagellar biosynthetic protein fliQ	Flagellar biosynthetic protein FliQ	Flagellar biosynthetic protein fliQ	CDS_ID OB1572; required for flagellar formation flagellar protein	Probable type III secretion inner membrane protein SctS	flagellar biosynthesis protein fliQ	Flagellar biosynthetic protein FliQ	Putative flagellar biosynthesis protein fliQ	Flagellar biosynthesis protein FliQ	Flagellar protein required for flagellar formation	Flagellar biosynthetic protein fliQ	Flagellar biosynthesis/type III secretory pathway protein	Polar flagellar assembly protein	Flagellar biosynthetic protein fliQ	Residues 1 to 89 of 89 are 100 pct identical to residues 1 to 89 of a 89 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288410.1 flagellar biosynthesis	Bacterial export proteins, family 3	FliQ protein	Probable flagellar biosynthetic fliq transmembrane protein	Flagellar biosynthetic protein FliQ	Flagellar biosynthetic protein FliQ	conserved gene flagellar biosynthetic protein FliQ	Flagellar biosynthetic protein FliQ	identified by similarity to SP:P35535; match to protein family HMM PF01313; match to protein family HMM TIGR01402 flagellar biosynthetic protein FliQ	Flagellar biosynthetic protein FliQ	identified by similarity to SP:P33134; match to protein family HMM PF01313; match to protein family HMM TIGR01402 flagellar biosynthetic protein FliQ	InterProMatches:IPR006305; required for flagellar formation,Cellular Component: integral to membrane (GO:0016021), Cellular Component: flagellum (GO:0019861) flagellar protein	flagellar biosynthetic protein FliQ	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar biosynthesis	IPR002191: Bacterial export protein FliQ, family 3 flagellar biosynthesis	
HELPY01388	Flagellum-specific ATP synthase	Flagellum-specific ATP synthase FliI	Polar flagellum-specific ATP synthase FliI	Flagellum-specific ATP synthase	CDS_ID OB1558 flagellar-specific H(+)-transporting ATP synthase	ATP synthase in type III secretion system, hrcN	Flagellum-specific ATP synthase FliI	Flagellum-specific ATP synthase	Flagellar-Type ATPase	Flagellum-like ATP synthase	Flagellar-specific ATP synthase	Flagellum-specific ATP synthase	Flagellar biosynthesis/type III secretory pathway ATPase	Polar flagellum-specific ATP synthase	Lin0724 protein	FliI	Residues 1 to 457 of 457 are 99 pct identical to residues 1 to 457 of a 457 aa protein from Escherichia coli K12 ref: NP_416451.1 flagellum-specific ATP synthase	Yops secretion ATPase	Flagellar ATP synthase	FliI protein	Probable flagellum-specific atp synthase protein	flagellum-specific ATP synthase FliI	conserved gene nucleotide binding protein FliI	flagellum-specific ATP synthase FliI	identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026 flagellum-specific ATP synthase FliI	InterProMatches:IPR005714; Cellular Component: cytoplasm (GO:0005737), Biological Process: biosynthesis (GO:0009058), Biological Process: protein transport (GO:0015031), Molecular Function: ATPase activity (GO:0016887) flagellar-specific ATP synthase	flagellum-specific ATP synthase	Flagellum-specific ATP synthase FliI	Flagellum-specific ATP synthase	
HELPY01389	Conjugative transfer regulon protein	TadA	SCD35.33, possible protein kinase, len: 435 aa; similar to TR:P94647 (EMBL:U77780) Chlorobium limicola secretory protein kinase Kbh, 474 aa; fasta scores: opt: 722 z-score: 805.0 E(): 0; 35.9% identity in 368 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) putative protein kinase	VIRB11 PROTEIN	Probable secretion atpase protein	P-type conjugative transfer ATPase TrbB	DNA transfer protein	COG0630 VirB11 type IV secretory pathway VirB11 components, and related ATPases involved in similar to AAM00419.1 VirB11 protein	putative type IV secretion NTPase similar to TadA	secretion ATPase possible Flp pilus assembly protein CpaF	Similar to Corynebacterium glutamicum predicted ATPases involved in pili and flagella biosynthesis, VirB11 family cgl0301 SWALL:Q8NTK6 (EMBL:AP005274) (341 aa) fasta scores: E(): 2.9e-40, 43.18% id in 301 aa, and to Actinobacillus actinomycetemcomitans TadA SWALL:Q9XC06 (EMBL:AF152598) (426 aa) fasta scores: E(): 7e-36, 37.33% id in 308 aa putative TadA-like protein	probable secretion ATPase protein,similar to bacterial type II secretion system protein E	type II secretion system protein E	Flp pilus assembly ATPase CpaF	type IV secretion system protein VirB11 identified by similarity to GB:AAM00414.1; match to protein family HMM PF00437	type II secretion system protein E	type II secretion system protein E	type II secretion system protein E	type II secretion system protein E	type IV secretion system ATPase	type II secretion system protein E	type IV secretion system protein B11, putative COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis	Type II secretion system protein E	virB11 protein Function unclear	type II secretion system protein E PFAM: type II secretion system protein E KEGG: tfu:Tfu_0128 pilus assembly protein CpaF	type II secretion system protein E PFAM: type II secretion system protein E SMART: AAA ATPase KEGG: rso:RSc0652 probable secretion ATPase protein	flp pilus assembly ATPase CpaF	Type IV secretion system protein	Putative Type II/IV secretion system protein	
HELPY01390	Isoleucyl-tRNA synthetase	isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase 1	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	CDS_ID OB1484 isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Residues 1 to 938 of 938 are 99 pct identical to residues 1 to 938 of a 938 aa protein from Escherichia coli K12 ref: NP_414567.1 isoleucine tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	
HELPY01391	Uncharacterized protein HP_1423	Putative uncharacterized protein	Hypothetical protein JHP1318	RNA-binding S4	hypothetical protein	hypothetical protein similarity to COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	S4 domain protein identified by match to protein family HMM PF01479	conserved hypothetical protein Hypothetical protein similar to HP1423/JHP1318 High confidence in function and specificity	S4 domain protein identified by match to protein family HMM PF01479	RNA-binding S4 protein	RNA-binding S4 protein	S4 domain protein	S4 domain protein	Putative RNA-binding protein	S4 domain protein	S4 domain protein	S4 domain protein	S4 domain protein	S4 domain protein	S4 domain protein	Putative uncharacterized protein	Putative uncharacterized protein	S4 domain protein	S4 RNA-binding domain protein	RNA-binding S4 domain protein	Putative uncharacterized protein	Putative RNA binding protein	RNA-binding S4 domain protein	RNA-binding S4 domain protein	
HELPY01392	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein similar to HP1424 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	


HELPY01395	Histidine-rich metal-binding polypeptide	histidine-rich metal binding polypeptide	
HELPY01396	Ribosomal RNA large subunit methyltransferase N	hypothetical protein	hypothetical conserved protein	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Radical SAM enzyme, Cfr family	Ribosomal RNA large subunit methyltransferase N	FLORFENICOL RESISTANCE PROTEIN	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	CDS_ID OB3097 hypothetical protein	similar to AL031035-22|CAA19907.1| percent identity: 59 in 364 aa conserved hypothetical protein	Ribosomal RNA large subunit methyltransferase N 2	hypothetical protein	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Putative uncharacterized protein	SC6A9.22c, unknown, len: 368 aa; similar to hypothetical proteins from many organisms e.g. YLON_BACSU hypothetical 41.6 kd protein (363 aa), fasta scores; opt: 772 z-score: 1018.0 E(): 0, 39.2% identity in 342 aa overlap conserved hypothetical protein SC6A9.22c	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	Ribosomal RNA large subunit methyltransferase N	hypothetical protein	Ribosomal RNA large subunit methyltransferase N	
HELPY01397	Uncharacterized protein HP_1429	POLYSIALIC ACID CAPSULE EXPRESSION PROTEIN KPSF	Putative polysialic acid capsule expression protein	Arabinose 5-phosphate isomerase	Putative Gut Q protein	hypothetical protein, similar to polysialic acid capsule expression protein	Arabinose-5-phosphate isomerase	CBS domain:Sugar isomerase (SIS):KpsF/GutQ family protein	Predicted sugar phosphate isomerase involved in capsule formation	Uncharacterized protein RP505	Polysialic acid capsule expression protein	Polysialic acid capsule expression protein	Residues 8 to 335 of 335 are 99 pct identical to residues 1 to 328 of a 328 aa protein from Escherichia coli K12 ref: NP_417664.1 putative isomerase	Uncharacterized protein CT_399	Arabinose 5-phosphate isomerase	YrbH protein	Putative sugar isomerase (Sis) protein	Similar to putative isomerase YrbH of Escherichia coli	Similar to arabinose 5-phosphate isomerase hypothetical protein	conserved gene polysialic acid capsule expression protein	Similar to arabinose 5-phosphate isomerase hypothetical protein	hypothetical protein	identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 arabinose 5-phosphate isomerase	Probable KpsF/GutQ family protein	Polysialic acid capsule expression protein	identified by similarity to EGAD:20643; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 arabinose-5-phosphate isomerase	Polysialic acid capsule expression protein	Sugar phosphate isomerase involved in capsule formation	IPR000644: CBS domain; IPR001347: Sugar isomerase (SIS); IPR004800: KpsF/GutQ family protein putative polysialic acid capsule expression protein	
HELPY01398	Ribonuclease J	hypothetical conserved protein	Putative uncharacterized protein	Metal dependent hydrolase	Putative uncharacterized protein MYPE5290	METAL DEPENDENT HYDROLASE	Putative uncharacterized protein	CDS_ID OB1408 hypothetical protein	Putative uncharacterized protein MYPU_7040	similar to X95649-1|CAC19480.1| percent identity: 84 in 700 aa putative metallo-beta-lactamase superfamily protein	hypothetical protein	Putative uncharacterized protein	Predicted metal-dependent hydrolase of metallo- beta-lactamase superfamily	Putative uncharacterized protein	Putative metallo-beta lactamase hydrolase	Metallo-beta-lactamase domain protein	Predicted hydrolase of the metallo-beta-lactamase superfamily	Putative uncharacterized protein RP441	Lin1026 protein	hypothetical protein	Ribonuclease J 1	Predicted hydrolase	Metallo-beta-lactamase superfamily protein	identified by match to protein family HMM PF00753; match to protein family HMM PF02147; match to protein family HMM TIGR00649 metallo-beta-lactamase family protein	Conserved hypothetical	Zn-dependent hydrolase	identified by match to protein family HMM PF00753; match to protein family HMM PF07521 metallo-beta-lactamase family protein	metallo-beta-lactamase superfamily protein	Hypothetical protein SE0787	
HELPY01399	Ribosomal RNA small subunit methyltransferase A	rRNA (adenine-N6,N6)-dimethyltransferase	dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	CDS_ID OB0050; 16S rRNA dimethylase dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	similar to AX064765-1|CAC25622.1| percent identity: 85 in 287 aa putative dimethyladenosine transferase	dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	
HELPY01400	Histidine and glutamine-rich protein	histidine and glutamine-rich metal binding protein	Histidine and glutamine-rich metal binding protein	
HELPY01400	Histidine and glutamine-rich protein	histidine and glutamine-rich metal binding protein	Histidine and glutamine-rich metal binding protein	
HELPY01401	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
HELPY01402	Formyltetrahydrofolate hydrolase	formyltetrahydrofolate hydrolase	Formyltetrahydrofolate deformylase; for purT- dependent FGAR synthesis	CDS_ID OB2693 formyltetrahydrofolate deformylase	similar to AX064399-1|CAC25440.1| percent identity: 87 in 305 aa putative formyltetrahydrofolate deformylase	Formyltetrahydrofolate deformylase	Formyltetrahydrofolate hydrolase	Residues 1 to 280 of 280 are 99 pct identical to residues 1 to 280 of a 280 aa protein from Escherichia coli O157:H7 ref: NP_309761.1 formyltetrahydrofolate deformylase	PurU protein	Formyltetrahydrofolate deformylase	phosphoribosylglycinamide formyltransferase	Formyltetrahydrofolate deformylase	Formyltetrahydrofolate deformylase	identified by similarity to SP:P37051; match to protein family HMM PF00551; match to protein family HMM TIGR00655 formyltetrahydrofolate deformylase	Formyltetrahydrofolate deformylase	Mb2988, purU, len: 310 aa. Equivalent to Rv2964, len: 310 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 310 aa overlap). Probable purU, formyltetrahydrofolate deformylase (EC 3.5.1.10), highly similar to others e.g. Q9RWT1|DR0584 FORMYLTETRAHYDROFOLATE DEFORMYLASE from Deinococcus radiodurans (298 aa), FASTA scores: opt: 1005, E(): 4.9e-52, (52.25% identity in 297 aa overlap); Q9K7U4 FORMYLTETRAHYDROFOLATE DEFORMYLASE from Bacillus halodurans (289 aa), FASTA scores: opt: 982, E(): 1.1e-50, (51.8% identity in 280 aa overlap); Q55135|PURU_SYNY3|SLL0070 FORMYLTETRAHYDROFOLATE DEFORMYLASE from Synechocystis sp. strain PCC 6803 (284 aa), FASTA scores: opt: 839, E(): 2.9e-42, (48.2% identity in 280 aa overlap); etc. PROBABLE FORMYLTETRAHYDROFOLATE DEFORMYLASE PURU (FORMYL-FH(4) HYDROLASE)	Biological Process: 'de novo' IMP biosynthesis (GO:0006189), Molecular Function: formyltetrahydrofolate deformylase activity (GO:0008864) Formyltetrahydrofolate deformylase	formyltetrahydrofolate hydrolase	Formyltetrahydrofolate deformylase	IPR004810: Formyltetrahydrofolate deformylase formyltetrahydrofolate hydrolase	similar to Salmonella typhi CT18 formyltetrahydrofolate deformylase formyltetrahydrofolate deformylase	Formyltetrahydrofolate deformylase PurU	FORMYLTETRAHYDROFOLATE HYDROLASE	Formyltetrahydrofolate deformylase	formyltetrahydrofolate deformylase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme formyltetrahydrofolate deformylase	formyltetrahydrofolate deformylase	Formyl-FH(4) hydrolase; Similar to: HI1588, PURU_HAEIN formyltetrahydrofolate deformylase	Similar to Q9KQK6 Formyltetrahydrofolate deformylase (277 aa). FASTA: opt: 1088 Z-score: 1353.6 E(): 1.7e-67 Smith-Waterman score: 1088; 59.206 identity in 277 aa overlap. Contains a frameshift after aa 81. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift pseudo formyltetrahydrofolate deformylase, pseudogene	
HELPY01403	Protease IV	PUTATIVE PROTEASE IV	protease IV	Signal peptide peptidase	Putative protease IV	Probable protease sohB	PROTEASE IV	PfaP	Protease	Peptidase family U7	similar to putative signal peptide peptidases hypothetical protein	conserved gene signal peptide peptidase	Similar to protease hypothetical protein	identified by match to protein family HMM PF01343 peptidase, family S49	Serine protease	identified by similarity to GP:1655731; match to protein family HMM PF01343; match to protein family HMM TIGR00706 signal peptide peptidase SppA, 36K type	Proteinase IV protein	Putative protease	Similar to Chlamydia pneumoniae protease sohB or cpn0613 or cp0134 SWALL:Q9Z7U1 (EMBL:AE001645) (333 aa) fasta scores: E(): 1.4e-87, 69.9% id in 319 aa putative exported protease	Putative uncharacterized protein	similar to BR0154, signal peptide peptidase SppA SppA, signal peptide peptidase SppA	Putative PROTEASE IV	Putative secreted protease	Similar to rp||sppA rc||sppA sp|Q55682|Y021_SYNY3; Ortholog to ERGA_CDS_06350 Putative Protease IV	COG0616 SppA periplasmic serine proteases (ClpP class) similar to NP_104359.1 protease IV	Similar to Q87YG1 Signal peptide peptidase SppA, 36K type from Pseudomonas syringae (332 a). FASTA: opt: 839 Z-score: 1007.2 E(): 3.3e-48 Smith-Waterman score: 839; 46.622 identity in 296 aa overlap ORF ftt1746 Peptidase	predicted periplasmic serine proteases (ClpP class)	putative secreted protease	Similar to rp||sppA rc||sppA sp|Q55682|Y021_SYNY3; Ortholog to ERWE_CDS_06440 Putative Protease IV	
HELPY01404	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01405	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01406	Conserved hypothetical lipoprotein	





HELPY01408	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01409	Peptidyl-prolyl cis-trans isomerase	Putative peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase A	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase A	CDS_ID OB1832; ppiase B; rotamase B peptidyl-prolyl cis-trans isomerase B	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Residues 1 to 193 of 193 are 98 pct identical to residues 1 to 190 of a 190 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289911.1 peptidyl-prolyl cis-trans isomerase A (rotamase A)	Peptidyl-prolyl cis-trans isomerase	similar to peptidyl-prolyl cis-trans isomerase proteins hypothetical protein	conserved gene peptidyl-prolyl cis-trans isomerase (rotamase)	similar to peptidyl-prolyl cis-trans isomerase proteins hypothetical protein	Peptidylprolyl isomerase	rotamase peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	identified by similarity to SP:P35137; match to protein family HMM PF00160 peptidyl-prolyl cis-trans isomerase B	Peptidyl-prolyl cis-trans isomerase	InterProMatches:IPR002130; Biological Process: protein folding (GO:0006457) peptidyl-prolyl isomerase	rotamase peptidyl-prolyl cis-trans isomerase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark peptidyl-prolyl cis-trans isomerase	peptidyl-prolyl cis-trans isomerase	IPR002130: Peptidyl-prolyl cis-trans isomerase, cyclophilin type peptidyl-prolyl cis-trans isomerase A (rotamase A)	similar to Salmonella typhi CT18 peptidyl-prolyl cis-trans isomerase peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	
HELPY01410	Carbon storage regulator homolog	CDS_ID OB2503 carbon storage regulator	Carbon storage regulator homolog	Carbon storage regulator homolog	Carbon storage regulator homolog	Carbon storage regulator	Carbon storage regulator homolog	identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202 carbon storage regulator	InterProMatches:IPR003751; Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of carbohydrate metabolism (GO:0006109), Biological Process: mRNA metabolism (GO:0016071) carbon storage regulator	carbon storage regulator CrsA	Carbon storage regulator homolog	Carbon storage regulator homolog	Carbon storage regulator homolog	post-translational activator of flhDC expression; regulates biofilm formation; RNA-binding; ortholog to Escherichia coli bnum: b2696; MultiFun: Cell processes 5.3; Information transfer 2.2.4; Metabolism 1.1.1, 1.3.1, 1.6.9, 1.7.8; Regulation 3.1.3.1, 3.3.4 carbon storage regulator	identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202 carbon storage regulator	Global regulator protein CsrA	carbon storage regulator, CsrA	Carbon storage regulator, CsrA , carbon storage regulator, CsrA	Carbon storage regulator, CsrA	carbon storage regulator	Carbon storage regulator	carbon storage regulator, CsrA	Carbon storage regulator	hypothetical protein similarity to COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing)	carbon storage regulator could also regulate swarming and quorum sensing	Carbon storage regulator protein A cytoplasmic protein	carbon storage regulator identified by match to protein family HMM TIGR00202	Carbon storage regulator protein A cytoplasmic protein	carbon storage regulator identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202	
HELPY01411	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	identified by similarity to SP:P24209; match to protein family HMM PF00288 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Similar to Pasteurella multocida 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or PM0245 SWALL:ISPE_PASMU (SWALL:P57833) (295 aa) fasta scores: E(): 4.3e-23, 36.59% id in 276 aa, and to Escherichia coli, and Escherichia coli O157:H7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or Ipk or B1208 or Z1979 or ECS1713 SWALL:ISPE_ECOLI (SWALL:P24209) (283 aa) fasta scores: E(): 4.3e-16, 34.24% id in 257 aa putative erythritol kinase	Putative uncharacterized protein	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to Escherichia coli, and Escherichia coli O157:H7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or Ipk or B1208 or Z1979 or ECS1713 SWALL:ISPE_ECOLI (SWALL:P24209) (283 aa) fasta scores: E(): 9.4e-15, 31.55% id in 263 aa, and to Bacteroides thetaiotaomicron 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase BT0624 SWALL:AAO75731 (EMBL:AE016928) (274 aa) fasta scores: E(): 7.2e-77, 70.43% id in 274 aa putative terpenoid biosynthesis-related protein	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154	4-diphosphocytidyl-2C-methyl-D-erythritol kinase identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) identified by match to protein family HMM PF00288	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase High confidence in function and specificity	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase identified by match to protein family HMM PF00288	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	
HELPY01412	SsrA-binding protein	tmRNA-binding protein	ssrA RNA (tmRNA)-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	CDS_ID OB2426 ssrA-binding protein	SsrA-binding protein	similar to AL138851-25|CAB72212.1| percent identity: 55 in 155 aa putative SsrA-binding protein	SsrA-binding protein	SSRA-BINDING PROTEIN	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	
HELPY01413	Putative biopolymer transport protein exbB-like 2	Putative biopolymer transport exbB-like protein 2	MotA/TolQ/ExbB proton channel	biopolymer transport protein	tolQ protein	biopolymer transport protein (Q9ZJH1) Putative biopolymer transport exbB-like protein High confidence in function and specificity	Biopolymer transport protein, ExbB/TolQ family	TonB-system energizer ExbB type-2	TonB-system energizer ExbB precursor	Biopolymer transport protein	Biopolymer transport protein	TonB-system energizer ExbB	Biopolymer transport protein ExbB	
HELPY01414	Putative biopolymer transport protein exbD-like 2	TonB system transport protein ExbD2	Biopolymer transport protein ExbD/TolR	Biopolymer transport ExbD1 protein	Biopolymer transport protein	Putative biopolymer transport exbD-like protein 2	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative biopolymer transport protein (ExbD)	Biopolymer transport protein	Biopolymer transport protein	identified by match to protein family HMM PF02472 tolR protein	identified by match to protein family HMM PF02472 transport protein ExbD PA0694	Biopolymer transport protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; PubMedId : 14668326; Product type t : transporter putative TonB system-dependent transport protein	biopolymer transport protein ExbD/TolR	Biopolymer transport protein ExbD/TolR	Biopolymer transport protein ExbD/TolR	Biopolymer transport protein ExbD/TolR	protein transporter protein similar to tolR (Atu3716) [Agrobacterium tumefaciens str. C58] Similar to swissprot:Q8U9L2 Putative location:bacterial inner membrane Psort-Score: 0.5076; go_component: membrane [goid 0016020]; go_function: transporter activity [goid 0005215]; go_process: transport [goid 0006810]	biopolymer transport protein	Biopolymer transport protein ExbD/TolR	TonB system transport protein ExbD identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804	(O25987) Putative biopolymer transport exbD-like protein High confidence in function and specificity	Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR KEGG: neu:NE0216 biopolymer transport protein ExbD/TolR	TolR protein	transport protein ExbD	putative biopolymer transport protein ExbD Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type t : transporter	Transport protein ExbD	Biopolymer transport protein TolR	Biopolymer transport protein ExbD/TolR	
HELPY01416	Ribonuclease P protein component	Ribonuclease P protein component	ribonuclease P, protein component	ribonuclease P protein component (Q9ZJH0) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP protein) (RNase P protein) (Protein C5) High confidence in function and specificity	Ribonuclease P, protein component	Ribonuclease P protein component	
HELPY01417	UPF0161 protein HP_1449	identified by similarity to SP:O25988; match to protein family HMM PF01809; match to protein family HMM TIGR00278 conserved hypothetical protein	conserved hypothetical protein	Hypothetical UPF0161 protein JHP1342	Ortholog of S. aureus MRSA252 (BX571856) SAR1875 conserved hypothetical protein	conserved hypothetical protein	Similar to Bacillus subtilis hypothetical protein YtjA SW:YTJA_BACSU (O34601) (75 aa) fasta scores: E(): 2.7e-20, 70.27% id in 74 aa, and to Bacillus halodurans hypothetical protein BH2828 SW:YS28_BACHD (Q9K921) (75 aa) fasta scores: E(): 1.1e-18, 64.86% id in 74 aa conserved hypothetical protein	Protein of unknown function DUF37	identified by similarity to OMNI:NTL01BH2832; match to protein family HMM PF01809; match to protein family HMM TIGR00278 conserved hypothetical protein TIGR00278	conserved hypothetical protein identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278	conserved hypothetical protein	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein similar to HP1449 High confidence in function and specificity	Putative uncharacterized protein	Putative uncharacterized protein	UPF0161 protein JJD26997_0822	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	protein of unknown function DUF37 PFAM: protein of unknown function DUF37 KEGG: sao:SAOUHSC_01914 hypothetical protein	protein of unknown function DUF37 PFAM: protein of unknown function DUF37	hypothetical protein	UPF0161 protein Ccur92_11320	UPF0161 protein Ccon26_07710	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01418	Inner membrane protein oxaA	Inner membrane protein oxaA	Inner membrane protein oxaA	Protein translocase subunit yidC	60 kDa inner-membrane protein	inner membrane protein, 60 kDa identified by match to protein family HMM PF02096	inner-membrane protein conserved protein, similar to HP1450 Specificity unclear	inner membrane protein, 60 kDa identified by match to protein family HMM PF02096	Putative uncharacterized protein	Putative uncharacterized protein	Inner membrane protein, 60 kDa	60 kDa inner-membrane protein	Inner membrane protein, 60 kDa	Inner membrane protein OxaA	Inner membrane protein OxaA	Inner membrane protein, 60 kDa	Putative inner membrane protein translocase component YidC	60 kDa inner-membrane protein	Inner membrane protein OxaA	60 kDa inner-membrane protein	Inner membrane protein translocase component	Putative inner membrane insertion protein; putative membrane protein; putative signal peptide	
HELPY01419	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	single-stranded nucleic acid binding domain	conserved hypothetical protein	conserved hypothetical protein similar to HP1451 hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	VirB11-interacting protein	Putative uncharacterized protein	
HELPY01420	tRNA modification GTPase mnmE	probable thiophene and furan oxidation protein	thiophen/furan oxidation protein	tRNA modification GTPase mnmE	TRNA modification GTPase TrmE	tRNA modification GTPase mnmE	THIOPHENE AND FURAN OXIDATION PROTEIN THDF	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	CDS_ID OB3491 tRNA modification GTPase	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase TrmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	Thiophene and furan oxidizer	tRNA modification GTPase mnmE	
HELPY01421	Putative uncharacterized protein	outer membrane protein HomD	Putative Outer membrane protein	Outer membrane protein	Outer membrane protein HomD	

HELPY01422	Putative uncharacterized protein	Putative	hypothetical protein	conserved hypothetical protein similar to HP1454 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01423	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein similar to HP1455 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01424	LPP20 lipoprotein	membrane-associated lipoprotein	conserved lipoprotein (P53436) LPP20 lipoprotein precursor,similar to HP1456 High confidence in function and specificity	Membrane-associated lipoprotein	Membrane-associated lipoprotein	Membrane-associated lipoprotein	
HELPY01425	Putative uncharacterized protein	Putative uncharacterized protein	Putative	putative lipoprotein	conserved hypothetical protein	hypothetical protein	conserved hypothetical protein KEGG: plt:Plut_0084 hypothetical protein	conserved hypothetical protein similar to HP1457 Function unclear	lipoprotein, putative identified by match to protein family HMM TIGR02722	putative lipoprotein	Putative uncharacterized protein	Putative lipoprotein	Membrane lipoprotein lipid attachment site precursor	Membrane lipoprotein lipid attachment site precursor	Membrane lipoprotein lipid attachment site precursor	membrane lipoprotein lipid attachment site TIGRFAM: membrane lipoprotein lipid attachment site KEGG: plt:Plut_0084 hypothetical protein	Putative uncharacterized protein	Membrane lipoprotein lipid attachment site precursor	Putative uncharacterized protein	Conserved hypothetical lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	Membrane lipoprotein lipid attachment site	

HELPY01426	Thioredoxin	Thioredoxin, trx	Thioredoxin H1	Thioredoxin	thioredoxin	Thioredoxin	Thioredoxin	Putative THIOREDOXIN	thioredoxin	transcript_id=ENSOCUT00000003581	transcript_id=ENSDNOT00000019204	thioredoxin TIGRFAMsMatches:TIGR01068	transcript_id=ENSETET00000003065	Thioredoxin	thioredoxin	Thiol-disulfide isomerase or thioredoxin	Thiol-disulfide isomerase and thioredoxin	Thiol-disulfide isomerase and thioredoxin	thioredoxin TIGRFAM: thioredoxin PFAM: Thioredoxin domain KEGG: mba:Mbar_A2310 thioredoxin	thioredoxin (P48384) Thioredoxin M-type chloroplast precursor (TRX-M) Function unclear	transcript_id=ENSMLUT00000009061	predicted protein go_function: electron transporter activity; go_process: electron transport	Thiol-disulfide isomerase and thioredoxin	Lodderomyces elongisporus (LELG_05251.1) conserved hypothetical protein (translation)	transcript_id=ENSMICT00000002126	thioredoxin	Thioredoxin domain	Thioredoxin	Thioredoxin	
HELPY01427	Uncharacterized RNA pseudouridine synthase HP_1459	ribosomal large subunit pseudouridine synthaseB (pseudouridylate synthase) (uracil hydrolyase)	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase B	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase B	CDS_ID OB1823 ribosomal large subunit pseudouridylate synthase	Pseudouridine synthase	hypothetical protein	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase B	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase B	Uncharacterized RNA pseudouridine synthase RP544	Pseudouridine synthase	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase B	Pseudouridine synthase	conserved hypothetical protein	Pseudouridine synthase	conserved gene pseudouridine synthase	Similar to ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) hypothetical protein	Pseudouridine synthase	
HELPY01428	DNA polymerase III subunit alpha	DNA polymerase III alpha subunit	DNA-directed DNA polymerase III alpha subunit	Putative DNA polymerase III alpha subunit	DNA polymerase III subunit alpha	DNA polymerase III, alpha subunit, form 1	DNA polymerase III alpha subunit	DNA POLYMERASE III, ALPHA CHAIN	DNA polymerase III alpha subunit	DNA polymerase III, alpha chain	DNA polymerase III, alpha subunit	DNA polymerase III alpha subunit	DNA polymerase III subunit alpha	CDS_ID OB2177 DNA polymerase III alpha subunit	similar to Z74020-12|CAA98315.1| percent identity: 67 in 1191 aa putative DNA polymerase III alpha subunit	Putative DNA polymerase III, alpha chain	DNA polymerase III alpha subunit	DNA polymerase III, alpha subunit	DNA polymerase III alpha subunit	DNA polymerase III alpha subunit	DNA polymerase III alpha subunit	DNA polimerase III, alpha chain	DNA polymerase III, alpha subunit	DNA polymerase III subunit alpha	DNA polymerase III subunit alpha	DNA polymerase III subunit alpha	DNA polymerase III alpha subunit	DNA polymerase III alpha chain	DNA polymerase III, alpha subunit	
HELPY01429	Cytochrome c551 peroxidase	cytochrome c peroxidase	Cytochrome c peroxidase	Cytochrome c551 peroxidase	identified by similarity to SP:P14532; match to protein family HMM PF03150 cytochrome c peroxidase	identified by similarity to SP:P14532; match to protein family HMM PF03150 cytochrome c551 peroxidase	Cytochrome c551 peroxidase	Putative CYTOCHROME C PEROXIDASE	Cytochrome c peroxidase family protein	identified by similarity to SP:P14532; match to protein family HMM PF03150 di-haem cytochrome c peroxidase	Cytochrome c peroxidase	Best Blastp Hit: pir||B70313 cytochrome-c peroxidase (EC 1.11.1.5) - Aquifex aeolicus >gi|2982865|gb|AAC06485.1| (AE000675) cytochrome c peroxidase [Aquifex aeolicus] COG1858 Cytochrome c peroxidase; CcpR putative cytochrome-c peroxidase	Cytochrome c peroxidase	2 FERROCYTOCHROME C + H(2)O(2) = 2 FERRICYTOCHROME C + 2 H(2)O. Cytochrome c2 is the electron donor rather than cytochrome c551 (c8) or azurin Citation: Ellfolk,N., Roennberg,M., Oesterlund,K., (1991) Biochim. Biophys. Acta 1080:68-77 BCCP, cytochrome c peroxidase	Di-haem cytochrome c peroxidase	Cytochrome-c peroxidase	Cytochrome-c peroxidase	Cytochrome-c peroxidase	cytochrome c551 peroxidase	Cytochrome-c peroxidase	Cytochrome-c peroxidase	cytochrome c551 peroxidase	Cytochrome-c peroxidase PFAM: Di-haem cytochrome c peroxidase KEGG: cch:Cag_1187 cytochrome c551 peroxidase	Cytochrome-c peroxidase	Cytochrome c peroxidase	cytochrome c551 peroxidase identified by match to protein family HMM PF03150	Cytochrome-c peroxidase PFAM: Di-haem cytochrome c peroxidase KEGG: sil:SPO0330 cytochrome c peroxidase	Cytochrome-c peroxidase PFAM: Di-haem cytochrome c peroxidase KEGG: rru:Rru_A1789 cytochrome-c peroxidase	Cytochrome-c peroxidase PFAM: Di-haem cytochrome c peroxidase KEGG: rru:Rru_A1789 cytochrome-c peroxidase	
HELPY01430	Secreted protein involved in flagellar motility	putative secreted motility protein	putative motility protein with HslJ and META domain COG3187, HslJ, Heat shock protein [Posttranslational modification, protein turnover,chaperones],pfam03724, META, Domain of unknown function (306). Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond. hypothetical protein	Putative secreted motility protein	Putative secreted motility protein	Secreted motility protein	
HELPY01431	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01432	Conserved hypothetical secreted protein	TOLUENE TOLERANCE PROTEIN TTG2C	Hypothetical exported protein	Putative periplasmic binding protein for ABC transporter	Mce related protein	Probable abc-type transport system involved in resistance to organic solvents, periplasmic component abc transporter protein	Similar to ABC-type transport system involved in resistance to organic solvents hypothetical protein	conserved gene ABC transport system periplasmic substrate binding protein	Similar to ABC-type transport system involved in resistance to organic solvents hypothetical protein	Putative uncharacterized protein	identified by similarity to GP:28974223; match to protein family HMM PF02470 ABC transporter, periplasmic substrate-binding protein, putative	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative uncharacterized protein	similar to BR1021, ABC transporter, periplasmic substrate-binding protein ABC transporter, periplasmic substrate-binding protein	Putative uncharacterized protein	Putative	Mce family protein	involved in resistance to organic solvents; COG1463 ABC-type transport system periplasmic component	Putative uncharacterized protein	Similar to Q9HZ27 Hypothetical protein PA3213 from Pseudomonas aeruginosa (312 aa). FASTA: opt: 282 Z-score: 315.9 E(): 1.1e-09 Smith-Waterman score: 282; 23.661 identity in 224 aa overlap. The archetype (Rv0169) for mce related family proteins, was isolated as being necessary for colonization of, and survival within, the macrophage MEDLINE:93377076. ORF ftt1249 mycobacterial cell entry (mce) related family protein	conserved hypothetical protein	identified by match to protein family HMM PF02470 mce related protein family	Mammalian cell entry related	Mce4/Rv3499c/MTV023.06c protein	Citation: PMID: 10529352 COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents periplasmic component Putative ABC transporter, periplasmic substrate-binding protein	putative exported protein	ABC-type transport system periplasmic component	Mammalian cell entry related	Mammalian cell entry related	
HELPY01433	ABC transporter, ATP-binding protein	ABC transporter ATP-binding protein	putative ABC transport system ATP-binding protein High confidence in function and specificity	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	
HELPY01434	Conserved hypothetical integral membrane protein	Putative permease of ABC transporter	Possible ABC transport permease	Putative abc-type transport system involved in resistance to organic solvents, permease component abc transporter protein	Putative uncharacterized protein	identified by similarity to GP:28974221; match to protein family HMM PF02405; match to protein family HMM TIGR00056 ABC transporter, permease protein, putative	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ABC transporter permease	ABC-type transport system involved in resistance to organic solvents, permease component	Putative uncharacterized protein	similar to BR1019, toulene ABC transporter, permease protein, hypothetical hypothetical toulene ABC transporter, permease protein	ABC transporter permease	Putative	Similar to rp||RP096 rc||RC0129; Ortholog to ERGA_CDS_00470 Conserved hypothetical protein	involved in resistance to organic solvents; COG0767 ABC-type transport system permease component	ABC transporter, permease protein, putative	Similar to Q9A5X9 ABC transporter,permease protein, putative from Caulobacter crescentus.(371 aa). FASTA: opt: 755 Z-score: 860.3 E(): 5e-40 Smith-Waterman score: 755; 36.095 identity in 338 aa overlap. ORF ftt1247 ABC transporter, membrane protein	predicted ABC-type transport system involved in resistance to organic solvents, permease component	ABC transporter permease	Similar to rp||RP096 rc||RC0129; Ortholog to ERWE_CDS_00480 Conserved hypothetical protein	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 ABC transporter, permease protein, putative	Protein of unknown function DUF140	protein of unknown function DUF140	Sulfate transporter/antisigma-factor antagonist STAS:Protein of unknown function DUF140	COG0767, ABC-type transport system (ABC-type toluene export system) involved in resistance to organic solvents permease component. pfam01740, STAS, STAS domain ABC transporter, inner membrane subunit	Putative uncharacterized protein	conserved hypothetical protein identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056	putative membrane protein	putative membrane protein identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056	Protein of unknown function DUF140	
HELPY01435	Putative uncharacterized protein	outer membrane protein	putative outer membrane protein DUF864(Sanger) Helicobacter pylori protein of unknow hypothetical protein	Outer membrane protein	Outer membrane protein	Outer membrane protein	
HELPY01436	Branched-chain-amino-acid aminotransferase	Branched-chain-amino-acid aminotransferase	Branched-chain-amino-acid aminotransferase	Probable branched-chain amino acid aminotransferase	Branched-chain-amino-acid aminotransferase	Branched-chain-amino-acid aminotransferase	CDS_ID OB2628 branched-chain amino acid aminotransferase	similar to AF424637-1|AAL24043.1| percent identity: 87 in 376 aa branched-chain amino acid aminotransferase	Branched-chain-amino-acid aminotransferase	Branched-chain-amino-acid transaminase	Branched-chain amino acid aminotransferase	Branched-chain-amino-acid aminotransferase	SC1C2.04, ilvE, probable branched-chain amino acid aminotransferase, len: 362 aa; similar to many, e.g.  ILVE_BACSU putative branched-chain amino acid aminotransferase (362 aa), fasta scores; opt: 1047 z-score: 1401.5 E(): 0, 44.7% identity in 360 aa overlap.  Contains PS00770 Aminotransferases class-IV signature branched-chain amino acid aminotransferase	Branched-chain-amino-acid aminotransferase	Branched-chain-amino-acid aminotransferase	Branched-chain amino acid aminotransferase	Probable branched-chain-amino-acid aminotransferase	Branched-chain-amino-acid aminotransferase	Branched-chain amino acid aminotransferase	identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123 branched-chain amino acid aminotransferase	Branched-chain amino acid aminotransferase	branched chain amino acid aminotransferase	Branched-chain-amino-acid aminotransferase	Probable branched-chain-amino-acid aminotransferase	Branched-chain-amino-acid aminotransferase	Branched-chain-amino-acid aminotransferase	Probable branched-chain-amino-acid aminotransferase	Mb2233c, ilvE, len: 368 aa. Equivalent to Rv2210c, len: 368 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 368 aa overlap). Probable ilvE, Branched-chain-amino-acid transaminase, highly similar to many e.g. YWAA_BACSU|P39576 from Bacillus subtilis (48.4% identity in 339 aa overlap); etc. PROBABLE BRANCHED-CHAIN AMINO ACID TRANSAMINASE ILVE	Branched-chain amino acid aminotransferase; Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084), Biological Process: branched chain family amino acid metabolism (GO:0009081) Branched-chain amino acid aminotransferase II	
HELPY01437	Outer membrane protein	Putative Outer membrane protein	outer membrane protein HorJ	outer membrane protein 32 hypothetical protein	Outer membrane protein	Outer membrane protein	Outer membrane protein HorJ	
HELPY01438	DNA polymerase I	DNA polymerase	DNA-directed DNA polymerase I	Putative DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA POLYMERASE I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	CDS_ID OB2163 DNA polymerase I	similar to AF051319-1|AAG43108.1| percent identity: 72 in 895 aa putative DNA polymerase I	Probable DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	SC7H2.17c, polA, DNA polymerase I, len: 907 aa; similar to many eg. SW:DPO1_MYCTU polA, DNA polymerase I from Mycobacterium tuberculosis (904 aa) fasta scores; opt: 3296, z-score: 3592.4, E(): 0, (57.5% identity in 909 aa overlap). Contains Pfam match to entry PF00476 DNA_pol_A, DNA polymerase family A and to entry PF01367 5_3_exonuclease, 5'-3' exonuclease. DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA polymerase I	
HELPY01439	Type IIS restriction enzyme R protein	type II restriction enzyme	Putative uncharacterized protein	Type II restriction enzyme	Type IIS restriction enzyme protein	Type IIS R-M system restriction enzyme	
HELPY01440	Type IIS restriction enzyme M protein	identified by sequence similarity; putative; ORF located using Blastx; COG0286 putative type II DNA modification enzyme: methyltransferase	N-6 DNA methylase	Type II restriction-modification system methylation subunit	N-6 DNA methylase	Site-specific DNA-methyltransferase	type II restriction modification enzyme methyltransferase High confidence in function and specificity	Type II restriction modification enzyme methyltransferase	Restriction enzyme BcgI alpha chain-like protein	N-6 DNA methylase	Restriction enzyme, alpha subunit/N-6 DNA methylase	Putative Restriction enzyme alpha subunit	Type IIS R-M system methyltransferase	Putative S of type II restriction endonuclease, N6_Mtase domain protein	N-6 DNA methylase	pseudo	type I restriction-modification system methyltransferase subunit similar to (nr):(gi|23466472|ref|ZP_00122060.1|), BLASTP E():0, 71.1% identity in 660 aa overlap.	
HELPY01441	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Transformation system protein	hypothetical protein	transformation system protein	Function unclear	transformation system protein	Transformation system protein	Transformation system protein	Transformation system protein	Transformation system protein	Transformation system protein	Transformation system protein	Transformation system protein	Putative uncharacterized protein	Putative uncharacterized protein	Transformation system protein	Putative uncharacterized protein	Amidophosphoribosyltransferase	Putative uncharacterized protein	
HELPY01442	Thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	thymidylate kinase	Similar to thymidylate kinase hypothetical protein	conserved gene thymidylate kinase	Similar to thymidylate kinase hypothetical protein	identified by similarity to EGAD:20762; match to protein family HMM PF02223; match to protein family HMM TIGR00041 thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 thymidylate kinase	InterProMatches:IPR000062; Molecular Function: thymidylate kinase activity (GO:0004798), Molecular Function: ATP binding (GO:0005524), Biological Process: dTDP biosynthesis (GO:0006233), Biological Process: dTTP biosynthesis (GO:0006235) thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Similar to Escherichia coli, and Shigella flexneri thymidylate kinase tmk or b1098 or sf1102 or s1182 SWALL:KTHY_ECOLI (SWALL:P37345) (213 aa) fasta scores: E(): 9.7e-17, 35.12% id in 205 aa, and to Deinococcus radiodurans thymidylate kinase tmk or dr0111 SWALL:KTHY_DEIRA (SWALL:Q9RY40) (206 aa) fasta scores: E(): 5.6e-26, 41.08% id in 202 aa thymidylate kinase	Thymidylate kinase	thymidylate kinase homologue	Thymidylate kinase	Ortholog of S. aureus MRSA252 (BX571856) SAR0483 putative thymidylate kinase	putative thymidylate kinase	Thymidylate kinase	
HELPY01443	Phosphopantetheine adenylyltransferase	pantetheine-phosphate adenylyltransferase	lipopolysaccharide core biosynthesis (pantetheine-phosphate adenylyltransferase) (dephospho-CoA pyrophosphorylase)	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Probable phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	CDS_ID OB1451; pantetheine-phosphate adenylyltransferase phosphopantetheine adenyltransferase	Probable phosphopantetheine adenylyltransferase	similar to AE001744-13|AAD35822.1| percent identity: 55 in 155 aa putative phosphopantetheine adenylyltransferase	phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	SC7A1.12, coaD, phosphopantetheine adenylyltransferase, len: 159 aa; strong similarity to many including SW:COAD_ECOLI phosphopantetheine adenylyltransferase (EC 2.7.7.3) CoaD or KdtB or B3634 from Escherichia coli (159 aa) fasta scores: opt: 485 Z-score: 587.5 E(): 4.5e-25; 45.513% identity (45.806% ungapped) in 156 aa overlap phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	Phosphopantetheine adenylyltransferase	
HELPY01444	Probable aromatic acid decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Probable aromatic acid decarboxylase	Probable aromatic acid decarboxylase	3-polyprenyl-4-hydroxybenzoate decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxylase	Residues 1 to 197 of 197 are 100 pct identical to residues 1 to 197 of a 197 aa protein from Escherichia coli gb: AAG14986.1 phenylacrylic acid decarboxylase-like protein	Probable aromatic acid decarboxylase	Flavoprotein	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX	Probable 3-octaprenyl-4-hydroxybenzoate carboxy- lyase protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	identified by match to protein family HMM PF02441 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative	Putative uncharacterized protein	Molecular Function: carboxy-lyase activity (GO:0016831) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	IPR003382: Flavoprotein; IPR004507: Phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase putative flavoprotein	Weakly similar to the C-terminus of Saccharomyces cerevisiae phenylacrylic acid decarboxylase pad1 or pof1 or ydr538W SWALL:PAD1_YEAST (SWALL:P33751) (242 aa) fasta scores: E(): 5.8e-24, 38.09% id in 189 aa. Also similar to several others for which function has to be fully defined e.g. Bacillus firmus probable aromatic acid decarboxylase SWALL:PAAD_BACFI (SWALL:P94300) (200 aa) fasta scores: E(): 2.3e-27, 44.89% id in 196 aa putative flavoprotein	Phenylacrylic acid decarboxylase	Probable aromatic acid decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase UbiX	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	Putative flavoprotein	UbiX related subunit of putative (de) carboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	
HELPY01445	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Flageller protein FlgA	hypothetical protein	putative flagella basal body P-ring formation protein FlgA (O67005) Flagella basal body P-ring formation protein flgA precursor(O67005) Flagella basal body P-ring formation protein flgA precursor High confidence in function and specificity	flagellar basal-body P-ring formation protein FlgA, putative identified by match to protein family HMM PF03240	Putative flagellar basal-body P-ring formation protein FlgA	Putative periplasmic protein	Flagellar basal body P-ring biosynthesis protein FlgA	Putative uncharacterized protein	Flagellar basal body P-ring formation protein FlgA, putative	Flagella basal body P-ring formation protein FlgA	
HELPY01446	DNA helicase II	ATP-dependent DNA helicase	ATP-dependent DNA helicase	Putative ATP-dependent DNA helicase	Putative ATP-dependent DNA helicase	DNA helicase II	ATP-dependent DNA helicase	ATP-dependent DNA helicase	DNA HELICASE II	ATP-dependent DNA helicase	ATP-dependent DNA helicase	DNA helicase II	ATP-dependent DNA helicase	DNA-dependent ATPase I and helicase II	CDS_ID OB0759 ATP-dependent DNA helicase	similar to Y15254-6|CAA75552.1| percent identity: 43 in 785 aa putative ATP-dependent DNA helicase	DNA helicase II	ATP-dependent DNA helicase, UvrD/Rep family	ATP-dependent DNA helicase PcrA	DNA helicase II	DNA helicase II	ATP-dependent superfamily I DNA helicase, PCRA	ATP-dependent DNA helicase II	ATP-dependent DNA helicase	ATP-dependent DNA helicase PcrA	SCD63A.08, probable ATP-dependent DNA helicase II, len: 831 aa; similar to TR:P73465 (EMBL:D90906) Synechocystis sp. DNA helicase II UvrD, 793 aa; fasta scores: opt: 1417 z-score: 1459.4 E(): 0; 40.4% identity in 817 aa overlap and to SW:REP_ECOLI (EMBL:M87049) Escherichia coli ATP-dependent DNA helicase Rep, 673 aa; fasta scores: opt: 824 z-score: 849.5 E(): 0; 37.8% identity in 661 aa overlap. Contains Pfam match to entry PF00580 UvrD-helicase, UvrD/REP helicase and match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) putative ATP-dependent DNA helicase II	Superfamily I DNA and RNA helicases	ATP-dependent DNA helicase	DNA helicase II	
HELPY01447	Putative uncharacterized protein	Putative uncharacterized protein	Putative	TPR repeat	hypothetical protein	TPR domain protein identified by match to protein family HMM PF00515; match to protein family HMM PF07719	conserved hypothetical protein Function unclear	TPR domain protein identified by match to protein family HMM PF00515; match to protein family HMM PF07719	TPR domain protein	Putative transmembrane protein	TPR repeat protein	GTP pyrophosphokinase	TPR domain protein	Putative uncharacterized protein	Putative uncharacterized protein	TPR domain protein	Conserved hypothetical integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01448	Seryl-tRNA synthetase	seryl-tRNA synthetase	seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	seryl-tRNA synthetase (serin-tRNA ligase)	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	CDS_ID OB0012 seryl-tRNA synthetase	Seryl-tRNA synthetase	similar to AP000003-108|BAA29801.1| percent identity: 38 in 419 aa putative seryl-tRNA synthetase	Probable seryl-tRNA synthetase	seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase 1	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	
HELPY01449	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase	hypothetical protein	hydrolase, carbon-nitrogen family	conserved hypothetical protein with amidohydrolase domain Function unclear	hydrolase, carbon-nitrogen family	Hydrolase, carbon-nitrogen family	Hydrolase, carbon-nitrogen family	Hydrolase, carbon-nitrogen family	Hydrolase, carbon-nitrogen family	Putative uncharacterized protein	Hydrolase, carbon-nitrogen family	Hydrolase, carbon-nitrogen family	Hydrolase, carbon-nitrogen family	Putative uncharacterized protein	Putative uncharacterized protein	Hydrolase, carbon-nitrogen family	Hydrolase, carbon-nitrogen family	Putative uncharacterized protein	Putative nitrilase/cyanide hydratase	
HELPY01450	Exodeoxyribonuclease 7 small subunit	exodeoxyribonuclease VII small subunit	predicted exodeoxyribonuclease VII small subunit hypothetical protein	Putative uncharacterized protein	Exodeoxyribonuclease VII small subunit	Exodeoxyribonuclease 7 small subunit	
HELPY01451	GerC2 protein	2-phytyl-1,4-benzoquinone methyltransferase	2-heptaprenyl-1,4-naphthoquinone methyltransferase (menaquinone biosynthesis methyltransferase)	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Putative ubiquinone/menaquinone biosynthesis methlytransferase	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	CDS_ID OB1789; spore germination protein C2 2-heptaprenyl-1,4-naphthoquinone methyltransferase	similar to AX064607-1|CAC25543.1| percent identity: 89 in 230 aa putative methyltransferase	Menaquinone biosynthesis methyltransferase ubiE	ubiquinone/menaquinone biosynthesis methlytransferase ubiE	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Menaquinone biosynthesis methyltransferase ubiE	SCD16A.27c, possible ubiquinone/menaquinone methyltransferase, len: 231aa; similar to many egs.  TR:O06424 (EMBL:Z95558) hypothetical protein from Mycobacterium tuberculosis (234 aa) fasta scores; opt: 1009, z-score: 1223.5, E(): 0, (67.7% identity in 229 aa overlap) and SW:UBIE_ECOLI ubiquinone/menaquinone methyltransferase from Escherichia coli (251 aa) fasta scores; opt: 456, z-score: 557.5, E(): 1e-23, (42.7% identity in 227 aa overlap). Contains Pfam match to entry PF01209 Ubie_methyltran, ubiE/COQ5 methyltransferase family. putative ubiquinone/menaquinone methyltransferase	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis	Menaquinone biosynthesis methyltransferase ubiE	Residues 1 to 251 of 251 are 100 pct identical to residues 1 to 251 of a 251 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290465.1 2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Menaquinone biosynthesis methyltransferase ubiE	
HELPY01452	UPF0093 membrane protein HP_1484	Membrane protein, putative	CYTOCHROME FUNCTIONING/ASSEMBLY RELATED PROTEIN	hypothetical integral membrane protein, possible involvement in cytochrome functioning/assembly	Hypothetical membrane spanning protein	Putative uncharacterized protein	UPF0093 membrane protein RP883	Putative uncharacterized protein	Probable transmembrane protein	similar to conserved hypothetical protein hypothetical protein	conserved gene transmembrane protein	similar to conserved hypothetical protein hypothetical protein	hypothetical protein	identified by match to protein family HMM PF03653 membrane protein, putative	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized conserved membrane protein	identified by similarity to SP:Q9ZJD5; match to protein family HMM PF03653; match to protein family HMM TIGR00701 conserved hypothetical protein TIGR00701	Putative uncharacterized protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Predicted membrane protein	Putative uncharacterized protein	similar to BR2065, membrane protein, hypothetical hypothetical membrane protein	Putative uncharacterized protein	Hypothetical UPF0093 protein JHP1377	Conserved hypothetical inner membrane protein	conserved hypothetical protein	Similar to sp|Q9ZC85|Y883_RICPR rc||RC1372 sp|Q53229|YRH1_RHOSH sp|Q9ZJD5|YE84_HELPJ; Ortholog to ERGA_CDS_00900 Conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protein	
HELPY01453	Putative uncharacterized protein	Putative uncharacterized protein	Proline dipeptidase	Putative uncharacterized protein	similar to AX065737-1|CAC26108.1| percent identity: 75 in 211 aa conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein lp_0734	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative uncharacterized protein ykjI	Putative uncharacterized protein	Putative	Hypothetical protein	identified by similarity to OMNI:NTL01LI2642; match to protein family HMM PF01205; match to protein family HMM TIGR00257 conserved hypothetical protein TIGR00257	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Similar to Q88YM1 Hypothetical protein from Lactobacillus plantarum (215 aa). FASTA: opt: 420 Z-score: 532.1 E(): 9.5e-22 Smith-Waterman score: 420; 35.025 identity in 197 aa overlap. ORF ftt1292c conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx; COG1739 putative proline dipeptidase	identified by sequence similarity; putative; ORF located using Blastx; COG1739 proline dipeptidase	identified by similarity to GB:AAN66220.1; match to protein family HMM PF01205 conserved hypothetical protein	Protein of unknown function UPF0029	conserved hypothetical protein	conserved hypothetical protein	Uncharacterized protein family UPF0029 identified by match to protein family HMM PF01205	Protein of unknown function UPF0029	
HELPY01454	Conserved hypothetical integral membrane protein	ABC transporter (ATP-binding protein)	ABC-type multidrug transport system, permease component	Similar to permease protein of ABC transport system	Putative uncharacterized protein	Putative	integral membrane protein	identified by similarity to GP:27362183 putative membrane protein	ABC-2	putative permease component of ABC transporter similarity:fasta; SWALL:Q6LJZ1 (EMBL:CR378676); Photobacterium profundum; hypothetical protein So4087; so4087; length 390 aa; 372 aa overlap; query 6-369 aa; subject 8-377 aa	Hypothetical protein	conserved hypothetical integral membrane protein	ABC-type multidrug transport system permease component	predicted ABC-2 type transport system permease protein Function unclear	ABC-2 type transporter PFAM: ABC-2 type transporter KEGG: she:Shewmr4_3461 ABC-2 type transporter	ABC-2	ABC-type multidrug transporter, permease component	conserved hypothetical protein KEGG: son:SO4087 conserved hypothetical protein	putative ABC-type multidrug transport system, permease component	hypothetical protein	Putative membrane protein	ABC-2 type transporter PFAM: ABC-2 type transporter KEGG: she:Shewmr4_3461 ABC-2 type transporter	ABC-2 type transporter	conserved hypothetical protein KEGG: son:SO4087 conserved hypothetical protein	ABC-2 type transporter	ABC-2 type transporter	ABC-2 type transporter	ABC-2 type transporter precursor	ABC-2 type transporter	
HELPY01455	Conserved hypothetical integral membrane protein	Putative uncharacterized protein VP1715	ABC-type multidrug transport system, permease component	Similar to permease protein of ABC transport system	Putative uncharacterized protein	Putative	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protein	daunorubicin resistance transmembrane protein	identified by similarity to OMNI:VC1608 putative membrane protein	hypothetical protein	putative permease component of ABC transporter similarity:fasta; SWALL:Q8A0W8 (EMBL:AE016942); Bacteroides thetaiotaomicron; hypothetical protein; length 393 aa; 375 aa overlap; query 1-374 aa; subject 1-374 aa	ABC-2 type transporter	conserved hypothetical integral membrane protein	ABC-type multidrug transport system permease component precursor	Hypothetical protein	predicted ABC-2 type transport system permease protein hypothetical protein	ABC-type multidrug transport system, permease component	ABC-2 type transporter PFAM: ABC-2 type transporter KEGG: she:Shewmr4_3462 ABC-2 type transporter	ABC-type multidrug transporter, permease component	ABC-2 type transporter PFAM: ABC-2 type transporter KEGG: son:SO4088 conserved hypothetical protein	putative ABC-type multidrug transport system, permease component	hypothetical protein	Putative membrane protein	ABC-2 type transporter PFAM: ABC-2 type transporter KEGG: son:SO4088 conserved hypothetical protein	ABC-2 type transporter	conserved hypothetical protein KEGG: son:SO4088 conserved hypothetical protein	ABC-2 type transporter	ABC-2 type transporter	ABC-2 type transporter	
HELPY01456	36 kDa antigen	Putative uncharacterized protein VP1714	Putative uncharacterized protein	Membrane-fusion protein	Similar to membrane fusion protein	Putative uncharacterized protein	36 kDa antigen	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane-fusion protein	multidrug resistance protein A	conserved hypothetical protein	secretion protein HlyD	putative HlyD family protein similarity:fasta; SWALL:Q9RQ30 (EMBL:AF132909); Neisseria gonorrhoeae; efflux pump protein fara; length 394 aa; 319 aa overlap; query 1-310 aa; subject 31-332 aa similarity:fasta; SWALL:Q7MYZ5 (EMBL:BX571874); Photorhabdus luminescens; similar to membrane fusion protein; length 323 aa; 322 aa overlap; query 5-325 aa; subject 4-323 aa	Secretion protein HlyD family protein precursor	conserved hypothetical secreted protein	Secretion protein HlyD family protein	AcrA/AcrE family protein VCA0639, putative	conserved hypothetical protein with EmrA domain COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms] Specificity unclear	membrane-fusion protein identified by match to protein family HMM PF00529	secretion protein HlyD family protein PFAM: secretion protein HlyD family protein KEGG: son:SO4089 HlyD family secretion protein	Secretion protein HlyD	HlyD family secretion protein	secretion protein HlyD family protein PFAM: secretion protein HlyD family protein KEGG: son:SO4089 HlyD family secretion protein	putative membrane protein	secretion protein HlyD	Putative RND family drug transporter	secretion protein HlyD family protein PFAM: secretion protein HlyD family protein KEGG: son:SO4089 HlyD family secretion protein	Secretion protein HlyD family protein precursor	Probable ABC-type transport system, membrane fusion efflux protein component	HlyD family secretion protein KEGG: son:SO4089 HlyD family secretion protein	
HELPY01457	Lipase-like protein	Putative uncharacterized protein VP1713	Putative outer membrane protein TolC	Outer membrane protein	Outer membrane protein	Putative uncharacterized protein	Putative	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative outer membrane efflux protein	type I secretion outer membrane protein	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0954 SWALL:AAO76061 (EMBL:AE016929) (470 aa) fasta scores: E(): 5.7e-132, 78.5% id in 442 aa, and to Shewanella oneidensis outer membrane efflux protein SO4090 SWALL:Q8EA19 (EMBL:AE015839) (473 aa) fasta scores: E(): 2.7e-30, 30.26% id in 456 aa putative outer membrane protein	identified by match to protein family HMM PF02321 outer membrane efflux protein	Outer membrane protein	Outer membrane efflux protein	Outer membrane efflux protein precursor	lipase-like protein	Outer membrane efflux protein precursor	type I secretion outer membrane protein	Outer membrane protein-like	conserved hypothetical protein with TolC domain hypothetical protein	putative outer membrane efflux protein Putative outer membrane effluxe protein protein.  Homology to tolC from E. coli of 33%. The OEP family (outer membreane effluxe protein) allow export of a variety of substrates in Gram negative bacteria. TolC is believed to be a membre af an ABC transporter system for protein secretion without cleavage of a signal sequence. Pfam: Outer membrane efflux protein Signal peptide no TMHs Family membership	outer membrane efflux protein identified by match to protein family HMM PF02321	outer membrane efflux protein PFAM: outer membrane efflux protein KEGG: pca:Pcar_1015 outer membrane protein-like	putative outer membrane macrolide efflux protein identified by match to protein family HMM PF02321	outer membrane efflux protein PFAM: outer membrane efflux protein KEGG: shm:Shewmr7_0487 outer membrane efflux protein	Outer membrane efflux protein	outer membrane efflux protein PFAM: outer membrane efflux protein KEGG: son:SO4090 outer membrane efflux protein	outer membrane efflux protein PFAM: outer membrane efflux protein KEGG: shm:Shewmr7_0487 outer membrane efflux protein	type I secretion outer membrane protein, TolC family protein TIGRFAM: type I secretion outer membrane protein, TolC family PFAM: outer membrane efflux protein KEGG: vvy:VV0583 outer membrane protein	outer membrane efflux protein PFAM: outer membrane efflux protein KEGG: gsu:GSU2664 outer membrane efflux protein	
HELPY01458	Putative uncharacterized protein	CBS domain protein	Probable HlyC/CorC family of transporters with 2 CBS domains	Uncharacterized CBS domain-containing protein, YUGS B.subtilis ortholog	Lin2334 protein	Hemolysin	Putative uncharacterized protein	similar to unknown protein hypothetical protein	conserved gene metal ion transporter	similar to unknown protein hypothetical protein	Integral membrane protein	Conserved membrane protein containing two CBS domains	identified by similarity to GP:29895731; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 transporter, putative	Uncharacterized protein Rv1841c/MT1889	Mb1872c, -, len: 349 aa. Equivalent to Rv1841c, len: 345 aa, from Mycobacterium tuberculosis strain H37Rv, (98.9% identity in 349 aa overlap). Conserved hypothetical membrane protein. Some similarity to O07585|YHDP_BACSU HYPOTHETICAL 49.9 KD PROTEIN from Bacillus subtilis (444 aa), FASTA scores: opt: 620, E(): 0, (31.1% identity in 350 aa overlap). Also similar to other Mycobacterium tuberculosis proteins e.g. Rv1842c, Rv2366c.  REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, a 12 bp in-frame insertion leads to a longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (349 aa versus 345 aa). CONSERVED HYPOTHETICAL MEMBRANE PROTEIN	CBS domain, conserved hypothetical protein	transport protein	Transport protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 CBS domain protein	Metal ion transporter, putative	conserved hypothetical protein	Hemolysin or related protein containing CBS domains	ortholog to Escherichia coli bnum: b1816; MultiFun: Cell structure 6.1 putative transmembrane protein	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 transporter, putative	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 hemolysin	CBS:Protein of unknown function DUF21:Transporter-associated region	
HELPY01459	Putative phosphate permease HP_1491	Putative uncharacterized protein	Low-affinity inorganic phosphate transporter	Putative phosphate permease CT_962	Phosphate transport protein	sodium/phosphate symporter	Similar to phosphate permease hypothetical protein	conserved gene phosphate transporter	Similar to phosphate permease hypothetical protein	identified by match to protein family HMM PF01384 phosphate transporter family protein	identified by match to protein family HMM PF01384 phosphate transporter family protein	Phosphate transport permease protein	Putative phosphate permease Rv2281/MT2339	Mb2302, pitB, len: 552 aa. Equivalent to Rv2281, len: 552 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 552 aa overlap). Putative pitB, phosphate-transport permease, integral membrane protein, similar to YG04_HAEIN P45268 putative phosphate permease hi1604 (420 aa). FASTA scores, opt: 484, E(): 5e-23, (33.5% identity in 498 aa overlap) also to G399598 amphotropic murine retrovirus receptor (656 aa) FASTA scores, opt: 453, E(): 5.8e-21, (26.8% identity in 645 aa overlap). Also similar to Rv0545c|pitA from M.  tuberculosis. BELONGS TO THE PIT SUBFAMILY. Putative phosphate-transport permease PitB	IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR001204: Phosphate transporter PiT family, low-affinity phosphate transporter	similar to Salmonella typhi CT18 putative low-affinity inorganic phosphate transporter putative low-affinity inorganic phosphate transporter	Phosphate permease	Putative phosphate permease JHP1384	Low affinity phosphate transporter, PiT family	Putative phosphate permease	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter phosphate transporter	Similar to: HI1604, YG04_HAEIN putative phosphate permease	phosphate-Repressible Phosphate Permease-like protein	Phosphate/sulphate permeases PitA protein	Low-affinity inorganic phosphate transporter	Phosphate permease	Low-affinity phosphate transporter	go_component: plasma membrane [goid 0005886]; go_function: sodium:inorganic phosphate symporter activity [goid 0015319]; go_process: phosphate transport [goid 0006817] phosphate-repressible phosphate permease	Phosphate permease	
HELPY01460	Conserved hypothetical nifU-like protein	nitrogen fixation protein (NifU protein)	CDS_ID OB2356; NifU protein nitrogen fixation protein	Nitrogen fixation protein	Nitrogen fixation protein NifU	identified by match to protein family HMM PF01106 NifU domain protein	putative NifU-like protein	Nitrogen fixation protein NifU	Thioredoxin family protein	identified by match to protein family HMM PF01106 NifU family protein	NifU protein homolog Conserved protein YutI	nitrogen fixation protein	Putative uncharacterized protein	similar to nitrogen fixation protein NifU hypothetical protein	Putative	Ortholog of S. aureus MRSA252 (BX571856) SAR0898 conserved hypothetical protein	hypothetical protein, similar to nitrogen fixation protein NifU	NifU-like protein	nitrogen-fixing NifU domain protein	nitrogen fixation protein NifU	identified by match to protein family HMM PF01106 NifU-like protein	Similar to Bacillus halodurans putative nitrogen fixation protein BH3419 TR:Q9K7E5 (EMBL:AP001518) (79 aa) fasta scores: E(): 1.1e-20, 77.333% id in 75 aa, and to Synechocystis sp hypothetical protein SSL2667 TR:P74558 (EMBL:D90916) (76 aa) fasta scores: E(): 1.6e-12, 51.389% id in 72 aa conserved hypothetical protein	NifU-like protein	nifU protein, homolog	identified by match to protein family HMM PF01106 NifU domain protein	similar to gi|27467548|ref|NP_764185.1| [Staphylococcus epidermidis ATCC 12228], percent identity 96 in 80 aa, BLASTP E(): 3e-38 conserved hypothetical protein	NifU-like protein	NifU domain protein identified by match to protein family HMM PF01106	Nitrogen-fixing NifU-like	
HELPY01461	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01462	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramyl tripeptide synthase	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	similar to AL109663-22|CAB51998.1| percent identity: 47 in 513 aa UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	Putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2, 6-diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	UDP-N-acetylmuramyl-tripeptide synthetase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamin opimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase 1	UDP-N-acetylmuramyl-tripeptide synthetase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	SC4A10.22c, murE, probable UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase, len: 506 aa; previously partially sequenced as TR:Q9Z5V6 (EMBL:AF123319), MurE, Streptomyces coelicolor UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase (fragment) (142 aa) and identical to that sequence. Similar to many e.g.  SW:MURE_ECOLI (EMBL:X55814), MurE, Escherichia coli UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase (494 aa), fasta scores; opt: 889 z-score: 881.7 E(): 0, 37.9% identity in 486 aa overlap and SW:MURE_MYCTU (EMBL:Z95388), MurE, Mycobacterium tuberculosis probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat e ligase (535 aa) (50.3% identity in 519 aa overlap).  Shows weak similarity to others from S.coelicolor e.g.  SC9B1.07 (EMBL:AL049727) S.coelicolor possible UDP-N-acetylmuramoyl-L-alanine ligase (462 aa) (26.6% identity in 497 aa overlap). Contains Pfam match to entry PF01225 Mur_ligase, Mur ligase family putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramyl-tripeptide synthetase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	
HELPY01463	Transaldolase	Putative transaldolase	Transaldolase	similar to AX065119-1|CAC25799.1| percent identity: 83 in 360 aa putative transaldolase	Transaldolase	Transaldolase	Transaldolase:Transaldolase subfamily	Transaldolase	identified by match to protein family HMM PF00923; match to protein family HMM TIGR00876 transaldolase	Transaldolase	Transaldolase	Mb1483c, tal, len: 373 aa. Equivalent to Rv1448c, len: 373 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 373 aa overlap). Probable tal, Transaldolase (EC 2.2.1.2), highly similar to many e.g.  TAL_MYCLE|P55193 transaldolase from Mycobacterium leprae (375 aa), FASTA scores: opt: 1891, E(): 0, (78.6% identity in 370 aa overlap). BELONGS TO THE TRANSALDOLASE FAMILY. PROBABLE TRANSALDOLASE TAL	Transaldolase	Transaldolase	Transaldolase	Similar to Mycobacterium tuberculosis transaldolase Tal or Rv1448c or mt1495 or mtcy493.06 SWALL:TAL_MYCTU (SWALL:O06812) (373 aa) fasta scores: E(): 2.6e-72, 54.14% id in 362 aa, and to Solanum tuberosum transaldolase pottal1 SWALL:O04894 (EMBL:U95923) (438 aa) fasta scores: E(): 5.1e-49, 44.22% id in 355 aa transaldolase	Transaldolase	Transaldolase	Transaldolase (EC 2.2.1.2).,Transaldolase is important for the balance of metabolites in the pentose- phosphate pathway (By similarity).	Transaldolase subfamily	transaldolase subfamily	Best Blastp Hit: emb|CAB85348.1| (AL162758) transaldolase [Neisseria meningitidis] COG0176 Transaldolase putative transaldolase	Transaldolase subfamily	transaldolase subfamily	transaldolase	transaldolase	Transaldolase	transaldolase	transaldolase TIGRFAM: transaldolase PFAM: Transaldolase KEGG: nwi:Nwi_2641 transaldolase	
HELPY01464	50S ribosomal protein L25	50S ribosomal protein L25	CDS_ID OB0060 50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein l25	50S ribosomal protein L25	50S ribosomal protein L25	identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal protein L25	50S ribosomal protein L25	identified by similarity to SP:P14194; match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal protein L25	Ribosomal protein L25, Ctc-form	InterProMatches:IPR001021; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412), Molecular Function: 5S rRNA binding (GO: general stress protein	general stress protein, ribosomal protein L25 family	Ribosomal protein L25 (general stress protein Ctc)	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	Ortholog of S. aureus MRSA252 (BX571856) SAR0502 putative 50S ribosomal protein L25	50S ribosomal protein L25	
HELPY01465	Peptidyl-tRNA hydrolase	peptidyl-tRNA hydrolase	stage V sporulation protein C (peptidyl-tRNA hydrolase)	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	CDS_ID OB0061; peptidyl-tRNA hydrolase (PTH) stage V sporulation protein C	Peptidyl-tRNA hydrolase	similar to AL359989-4|CAB95918.1| percent identity: 48 in 168 aa putative peptidyl-tRNA hydrolase	peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	SCE66.04, pth, peptidyl-tRNA hydrolase (EC 3.1.1.29), len: 200aa; strongly similar to many eg.  SW:P23932 (PTH_ECOLI) peptidyl-tRNA hydrolase from Escherichia coli (194 aa) fasta scores; opt: 449, z-score: 529.8, E(): 4.9e-22, 41.1% identity in 185 aa overlap.  Contains Pfam match to entry PF01195 Pept_tRNA_hydro, Peptidyl-tRNA hydrolase and Prosite match to PS01196 Peptidyl-tRNA hydrolase signature 2. peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	
HELPY01466	Putative uncharacterized protein	identified by similarity to GP:12228593; match to protein family HMM PF03739 membrane protein, putative	Putative uncharacterized protein	Hypothetical transmembrane protein	Putative	Permease YjgP/YjgQ	hypothetical protein	permease	permease YjgP/YjgQ identified by match to protein family HMM PF03739	conserved hypothetical protein Membrane protein.Membrane protein. conserved hypothetical protein	membrane protein, putative identified by match to protein family HMM PF03739	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	Putative integral membrane protein	Conserved hypothetical membrane protein	Permease YjgP/YjgQ family protein	Methionyl-tRNA formyltransferase	Permease YjgP/YjgQ	Putative membrane protein	Permease YjgP/YjgQ	Permease YjgP/YjgQ family protein	Putative uncharacterized protein	Permease YjgP/YjgQ, putative	Putative uncharacterized protein	Putative permease YjgP/YjgQ	Permease YjgP/YjgQ family protein	Conserved hypothetical integral membrane protein	
HELPY01467	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01469	Outer membrane protein	outer membrane protein HopK	outer membrane protein 2 Region start changed from 88584 to 88497 (87 bases)	Outer membrane protein	Outer membrane protein HorK	
HELPY01471	Cation-transporting ATPase, P-type	nitrogen fixation protein fixI	Putative cation (Heavy metal) transporting ATPase	Probable cation-transporting atpase lipoprotein transmembrane	Probable cation transport P-type ATPase	Cation-transporting ATPase	similar to BR0357, nitrogen fixation protein FixI, hypothetical nitrogen fixation protein FixI, hypothetical	Putative component of cation transport for cbb3-type oxidase	Putative P-type cation-transporting ATPase	Cation transport ATPase	probable cation transport P-type ATPase (EC 3.6.3.4)	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 copper-translocating P-type ATPase	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 cation-transporting P-type ATPase	ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase	Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase	Best Blastp Hit: pir||C81835 probable P-type cation-transporting ATPase NMA1444 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380097|emb|CAB84680.1| (AL162756) putative P-type cation-transporting ATPase [Neisseria meningitidis] COG2217 Cation transport ATPases putative P-type cation-transporting ATPase	Cation-transporting ATPase A, P type:Copper-transporting ATPase:ATPase, E1-E2 type:Mercury scavenger protein:Haloacid dehalog...	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12524462; Product type t : transporter Cation transport ATPase, E1-E2 family	ATPase, E1-E2 type:Heavy metal transport/detoxification protein:Heavy metal binding:HAD-superfamily hydrolase, subfamily IIB Citation: Roh, J.H. Kaplan,S. J.Bacteriol.182:3475-3481,2000 Roh, J.H. Kaplan,S. J.Bacteriol.184:5330-5338,2002 Copper-translocating P-type ATPase, RdxI	heavy-metal transporting CPx-type ATPase identified by similarity to PIR:G84370; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525	Heavy metal translocating P-type ATPase	Copper-translocating P-type ATPase	Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase	Copper-translocating P-type ATPase	Heavy metal translocating P-type ATPase	copper-translocating P-type ATPase TIGRFAMsMatches:TIGR01511	copper-translocating P-type ATPase	cation transport ATPase protein Similar to FixI [Rhizobium etli] Similar to entrez-protein:NP_659752.1 Putative location:bacterial inner membrane Psort-Score: 0.4800	Heavy metal translocating P-type ATPase precursor	
HELPY01470	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative integral membrane protein	Best Blastp Hit: pir||C81248 conserved hypothetical protein NMB0013 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225238|gb|AAF40492.1| (AE002359) conserved hypothetical protein [Neisseria meningitidis MC58] conserved hypothetical protein	putative membrane protein	Putative uncharacterized protein	hypothetical protein	protein of unknown function DUF474 PFAM: protein of unknown function DUF474 KEGG: bbr:BB2497 hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF04323	Putative integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	integral membrane protein Code: S; COG: COG3399	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01472	Putative uncharacterized protein	Putative uncharacterized protein	O-methyltransferase putative nucleic acid modification enzyme	Putative uncharacterized protein	tRNA (adenine-N(6)-)-methyltransferase	CDS_ID OB0042 hypothetical protein	BH0047 protein	SAM-dependent methyltransferases	Lin0208 protein	identified by similarity to OMNI:SA0529 conserved hypothetical protein	Methyltransferase	conserved hypothetical protein	Hypothetical protein SE2296	Methyltransferase	identified by similarity to OMNI:NTL01HP01386 conserved hypothetical protein	Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) conserved hypothetical protein containing SAM (and some other nucleotide) binding motif YabB	conserved hypothetical protein	Putative uncharacterized protein ywbA	Putative uncharacterized protein	Putative uncharacterized protein gbs0799	Putative	identified by Glimmer2; putative conserved hypothetical protein	Methyltransferase	best blastp match gb|AAK34226.1| (AE006578) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	identified by similarity to SP:P37543 conserved hypothetical protein	Conserved hypothetical protein	methyltransferase	conserved hypothetical protein	conserved hypothetical protein; possible methyltransferase	
HELPY01473	Riboflavin biosynthesis protein	Riboflavin biosynthesis protein ribD	identified by similarity to GB:CAB71026.1; match to protein family HMM PF00383 riboflavin biosynthesis protein RibD, putative	RibG	Riboflavin biosynthesis protein ribD	Mb1444, ribG, len: 339 aa. Equivalent to Rv1409, len: 339 aa, from Mycobacterium tuberculosis strain H37Rv, (99.4% identity in 339 aa overlap). Probable ribG (alternate gene name: ribD), bifunctional riboflavin biosynthesis protein, including diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase (EC 3.5.4.26 and 1.1.1.193), similar to many e.g.  RIBD_ECOLI|P25539 riboflavin-specific deaminase from Escherichia coli (367 aa), FASTA scores: E(): 0, (39.8% identity in 364 aa overlap); etc. Contains PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. IN THE N-TERMINAL SECTION; BELONGS TO THE CYTIDINE AND DEOXYCYTIDYLATE DEAMINASES FAMILY. IN THE C-TERMINAL SECTION; BELONGS TO THE HTP REDUCTASE FAMILY. PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP reductase)	Riboflavin biosynthesis protein RibD	Putative RIBOFLAVIN-SPECIFIC DEAMINASE	COG0117 riboflavin-specific deaminase/reductase	Bifunctional riboflavin biosynthesis protein RibD	5-amino-6-(5-phosphoribosylamino)uracil reductase	Riboflavin biosynthesis protein RibD	riboflavin biosynthesis protein	Riboflavin biosynthesis protein RibD	riboflavin biosynthesis protein RibD KEGG: cch:Cag_0623 riboflavin biosynthesis protein RibD TIGRFAM: riboflavin biosynthesis protein RibD PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein	riboflavin biosynthesis protein RibD identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326	riboflavin biosynthesis protein RibD identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326	Riboflavin biosynthesis protein RibD	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase (O24750) Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] High confidence in function and specificity	riboflavin biosynthesis protein RibD KEGG: mmc:Mmcs_2386 riboflavin biosynthesis protein RibD TIGRFAM: riboflavin biosynthesis protein RibD PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein	diaminohydroxyphosphoribosylaminopyrimidine deaminase 5-amino-6-(5-phosphoribosylamino)uracil reductase	bifunctional riboflavin biosynthesis protein RibG Detected in the membrane fraction by proteomics (2D- LC-MS/MS) membrane protein involved in riboflavin biosynthesis (at the second and third steps) converts 2,5-diamino-6-(ribosylamino)- 4(3H)-pyrimidinone 5'-phosphate into 5-amino-6- (ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate [catalytic activity 1: 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine + H(2)O = 5-amino-6-(5- phosphoribosylamino)uracil + NH(3)] [catalytic activity 2: 5-amino-6-(5-phosphoribitylamino)uracil + NADP(+) = 5- amino-6-(5-phosphoribosylamino)uracil + NADPH]	bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase Mapped to H37Rv Rv1409	Probable bifunctional riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase	riboflavin biosynthesis protein RibD KEGG: mmc:Mmcs_2386 riboflavin biosynthesis protein RibD TIGRFAM: riboflavin biosynthesis protein RibD PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein	riboflavin biosynthesis protein RibD identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326	Riboflavin biosynthesis protein RibD	Riboflavin-specific deaminase	Riboflavin biosynthesis protein RibG	
HELPY01474	Glutamate permease	Glutamate transport	CDS_ID OB3170 hypothetical protein	Transporter, putative	Residues 1 to 401 of 401 are 100 pct identical to residues 1 to 401 of a 401 aa protein from Escherichia coli K12 ref: NP_418110.1 glutamate transport	Sodium/glutamate symport carrier protein	Sodium/glutamate symporter	Sodium/glutamate symport carrier protein	identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210 sodium:glutamate symporter	Sodium/glutamate symport carrier protein	Sodium/glutamate symporter	IPR004445: Sodium/glutamate symporter GltS family, glutamate transport protein	similar to Salmonella typhi CT18 glutamate permease glutamate permease	hypothetical protein, similar to sodium/glutamate symporter	Sodium/Glutamate Symporter	Sodium/glutamate symport carrier protein	Sodium/glutamate symport carrier protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2430 putative permease	hypothetical protein, similar to sodium/glutamate symporter	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter sodium/glutamate symport carrier protein	glutamate permease; Similar to: HI1530, GLTS_HAEIN Sodium/glutamate symport carrier protein	Sodium-glutamate symporter	GltS family glutamate transport protein	identified by similarity to SP:P19933; match to protein family HMM PF03616; match to protein family HMM TIGR00210 sodium/glutamate symporter	sodium/glutamate symporter	hypothetical protein, similar to sodium/glutamate symporter	identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210 sodium/glutamate symporter	Similar to Escherichia coli sodium/glutamate symport carrier protein GltS SW:GLTS_ECOLI (P19933) (401 aa) fasta scores: E(): 1.9e-48, 39.14% id in 396 aa, and to Pseudomonas aeruginosa sodium/glutamate symporter PA3176 TR:Q9HZ58 (EMBL:AE004741) (404 aa) fasta scores: E(): 3.2e-55, 41.19% id in 403 aa putative permease	Best Blastp Hit: pir||F81240 sodium/glutamate symporter NMB0085 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225302|gb|AAF40548.1| (AE002367) sodium/glutamate symporter [Neisseria meningitidis MC58] COG0786 Glutamate permease; GltS putative glutamate permease	
HELPY01475	Conserved hypothetical ATP-binding protein	Carboxynorspermidine dehydrogenase	Putative carboxynorspermidine dehydrogenase	BH3957 protein	SC10F4.17c, possible ATP binding protein, len: 407 aa; similar to TR:Q9KRL3 (EMBL:AE004240) Vibrio cholerae hypothetical protein VC1624, 414 aa; fasta scores: opt: 582 z-score: 689.7 E(): 7e-31; 29.8% identity in 413 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop) putative ATP binding protein	Saccharopine dehydrogenase	hypothetical protein	saccharopine dehydrogenase	identified by match to protein family HMM PF03435 saccharopine dehydrogenase	Putative uncharacterized protein	similar to BR0335, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative	Conserved hypothetical protein	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4612 SWALL:AAO79717 (EMBL:AE016945) (397 aa) fasta scores: E(): 1.3e-158, 96.97% id in 397 aa, and to Synechocystis sp. hypothetical protein Slr0049 SWALL:Q55131 (EMBL:D64001) (398 aa) fasta scores: E(): 4.5e-111, 66.15% id in 393 aa, and to Bacillus halodurans hypothetical protein BH3957 SWALL:Q9K5X9 (EMBL:AP001520) (410 aa) fasta scores: E(): 1.5e-105, 63.15% id in 399 aa conserved hypothetical protein	Putative uncharacterized protein	Carboxynorspermidine dehydrogenase	identified by match to protein family HMM PF03435 saccharopine dehydrogenase	ATP/GTP-binding site motif A (P-loop):Saccharopine dehydrogenase	Saccharopine dehydrogenase-like protein	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] saccharopine dehydrogenase family	Saccharopine dehydrogenase	Saccharopine dehydrogenase	Saccharopine dehydrogenase	Saccharopine dehydrogenase	Saccharopine dehydrogenase PFAM: Saccharopine dehydrogenase: (3.4e-175) KEGG: dra:DR1252 hypothetical protein, ev=0.0, 80% identity	hypothetical protein	Acyl carrier protein (ACP)	hypothetical protein similarity to COG1748 Saccharopine dehydrogenase and related proteins(Evalue: 0)	
HELPY01476	Ferrodoxin-like protein	FixG-related protein	nitrogen fixation protein fixG	FixG-related protein	Probable iron-sulfur 4fe-4s ferredoxin transmembrane protein	identified by match to protein family HMM PF00037 iron-sulfur cluster-binding domain protein	Putative uncharacterized protein	similar to BR0359, iron-sulfur cluster-binding protein iron-sulfur cluster-binding protein	Putative ferredoxin-like protein	Putative ferredoxin	hypothetical protein	Iron-sulfur cluster-binding protein	putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein	identified by match to protein family HMM PF00037 iron-sulfur cluster-binding protein	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding	Best Blastp Hit: gb|AAF41813.1| (AE002495) ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58] COG0348 Polyferredoxin putative ferredoxin	4Fe-4S ferredoxin, iron-sulfur binding domain	involved in signal transduction regulatory pathway for photosynthesis gene expression Citation: Roh, J.H.  Kaplan,S. J.Bacteriol.182:3475-3481,2000 Roh, J.H.  Kaplan,S. J.Bacteriol.184:5330-5338,2002 iron-sulfur cluster-binding protein	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding domain	4Fe-4S ferredoxin, iron-sulfur binding	Polyferredoxin COG0348	4Fe-4S ferredoxin, iron-sulfur binding	ferrodoxin-like protein	
HELPY01477	Glycerol-3-phosphate acyltransferase	hypothetical conserved protein	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	CDS_ID OB1689 hypothetical protein	Glycerol-3-phosphate acyltransferase	hypothetical protein	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	UPF0078 membrane protein UUR10_0448	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	UPF0078 membrane protein MYCGA3860	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Predicted membrane protein hypothetical protein	conserved gene transmembrane protein	Predicted membrane protein hypothetical protein	identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 conserved hypothetical protein TIGR00023	Glycerol-3-phosphate acyltransferase	Hypothetical membrane spanning protein	hypothetical protein	
HELPY01478	Putative uncharacterized protein	Putative uncharacterized protein	DIHYDRONEOPTERIN ALDOLASE	Dihydroneopterin aldolase	dihydroneopterin aldolase	FolB domain protein	(P46362) Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA) Function unclear	folB domain protein identified by match to protein family HMM PF02152	Putative uncharacterized protein	Putative uncharacterized protein	FolB domain protein	FolB domain protein	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	
HELPY01479	Putative uncharacterized protein	FrpB-like protein	conserved hypothetical protein similar to HP1511 Function unclear	FrpB-like protein	FrpB-like protein	Frpb-like protein	
HELPY01480	Iron-regulated outer membrane protein	Putative IRON-REGULATED OUTER MEMBRANE PROTEIN	iron-regulated outer membrane protein	iron-regulated outer membrane protein Function unclear	Iron-regulated outer membrane protein	Iron-regulated outer membrane protein	
HELPY01481	L-seryl-tRNA(Sec) selenium transferase	L-seryl-tRNA selenium transferase	L-seryl-tRNA(Sec) selenium transferase	Residues 1 to 463 of 463 are 99 pct identical to residues 1 to 463 of a 463 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290171.1 selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase	L-seryl-tRNA(Sec) selenium transferase	identified by similarity to SP:Q9S3K3; match to protein family HMM PF03841; match to protein family HMM TIGR00474 L-seryl-tRNA selenium transferase	IPR004534: L-seryl-tRNA selenium transferase selenocysteine synthase (with SelD)	similar to Salmonella typhi CT18 L-seryl-tRNA(Ser) selenium transferase L-seryl-tRNA(Ser) selenium transferase	L-seryl-tRNA(Sec) selenium transferase	L-seryl-tRNA(Sec) selenium transferase	L-seryl-tRNA(Sec) selenium transferase	Sec; cysteinyl-tRNA(Sec) selenium transferase; selenocysteine synthase; selenocysteinyl-tRNA(Sec) synthase; Similar to: HI0708, SELA_HAEIN L-seryl-tRNA selenium transferase	Selenocysteine synthase seryl-tRNASer selenium transferase SelA protein	L-seryl-tRNA(Sec) selenium transferase	selenocysteinyl-tRNA (sec) synthase L-seryl-tRNA (Sec) selenium transferase	Code: E; COG: COG1921 selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase	identified by similarity to SP:Q9S3K3; match to protein family HMM PF03841; match to protein family HMM TIGR00474 L-seryl-tRNA selenium transferase	L-seryl-tRNA selenium transferase	L-seryl-tRNA (Ser) selenium transferase; Code: E; COG: COG1921 selenocysteine synthase	L-seryl-tRNA selenium transferase	selenocysteinyl-tRNA(SeC) synthase	L-seryl-tRNA(Sec) selenium transferase	L-seryl-tRNA (Ser) selenium transferase; Code: E; COG: COG1921 selenocysteine synthase	L-seryl-tRNA(Sec) selenium transferase	L-seryl-tRNA(Sec) selenium transferase PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes L-seryl-tRNA selenium transferase KEGG: ade:Adeh_0412 L-seryl-tRNA(sec) selenium transferase	selenocysteine synthase	L-seryl-tRNA selenium transferase	L-seryl-tRNA selenium transferase identified by match to protein family HMM PF01053; match to protein family HMM PF03841; match to protein family HMM TIGR00474	Selenocysteine synthase	
HELPY01482	Transcription elongation protein nusA	transcription termination-antitermination factor	Putative transcription termination- antitermination factor	N utilization substance protein A	N UTILIZATION SUBSTANCE PROTEIN A	N-utilization substance protein a	Putative transcription factor NusA	N utilization substance protein A	Transcription elongation protein nusA	CDS_ID OB1595 transcriptional termination-antitermination factor	N-UTILIZATION SUBSTANCE PROTEIN A	Putative transcription termination- antitermination factor nusA	N utilization substance protein A	N utilization substance protein A, putative	N utilization substance protein A-like protein	Transcription elongation protein nusA	Transcription terminator NusA	Transcription elongation protein nusA	Transcription terminator	Transcription termination factor NusA	Transcription pausing L factor	Transcription elongation protein nusA	N utilization substance protein A	Residues 1 to 495 of 495 are 100 pct identical to residues 1 to 495 of a 495 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289745.1 transcription pausing; L factor	Transcription antitermination factor	N utilization substance protein A	Transcription termination-antitermination factor	NusA protein	Probable n utilization substance transcription regulator protein	

HELPY01485	Type IIS restriction enzyme R and M protein	Putative TYPE II DNA MODIFICATION ENZYME	An isoschizomer of SagNORF1324P found in Streptococcus agalactiae NEM316.; identified by similarity to GB:CAD46983.1 type IIG restriction enzyme and methyltransferase	type IIS restriction-modification protein	Type I restriction-modification system methyltransferase subunit	putative type II DNA modification enzyme (methyltransferase) fragment 2 putative type II DNA modification enzyme (methyltransferase) hypothetical protein	Type II restriction-modification enzyme, R and M protein	Putative uncharacterized protein	Putative Type II restriction modification system	Putative type IIS restriction/modification enzyme	Putative type II DNA modification enzyme	Putative uncharacterized protein	Putative uncharacterized protein	Type IIS restriction endonuclease, putative	Putative uncharacterized protein	Type II S restriction-modification protein	Type II restriction-modification enzyme	Putative uncharacterized protein	Type IIS R-M system restriction/modification enzyme	Putative uncharacterized protein	Putative type IIS restriction-modification protein	



HELPY01489	Type III restriction enzyme R protein	IPR006935: Type III restriction enzyme, res subunit DNA restriction (DNA helicase	similar to Salmonella typhimurium DNA restriction (DNA helicase DNA restriction (DNA helicase	TYPE III RESTRICTION ENZYME	Type III restriction-modification system StyLTI enzyme res	type III restriction enzyme	identified by similarity to SP:P08764 type III restriction-modification system, restriction endonuclease subunit	Type III restriction enzyme, res subunit	Restriction endonuclease	type III restriction-modification system, restriction subunit	type III R-M system restriction enzyme	pseudo Type III restriction-modification system endonuclease (fragment)	Type III restriction system endonuclease	type III restriction-modification system restriction subunit	type III restriction enzyme, res subunit PFAM: type III restriction enzyme, res subunit KEGG: cte:CT0911 type III restriction system endonuclease	type III restriction enzyme, res subunit PFAM: type III restriction enzyme, res subunit KEGG: cte:CT0911 type III restriction system endonuclease	type III restriction system endonuclease	Type III restriction enzyme, res subunit	type III restriction enzyme (P08764) Type III restriction-modification system EcoPI enzyme res (EC 3.1.21.5) hypothetical protein	type III restriction enzyme, res subunit PFAM: type III restriction enzyme, res subunit KEGG: cte:CT0911 type III restriction system endonuclease	type III restriction-modification system, res subunit identified by match to protein family HMM PF04851	Type III restriction-modification system, restriction endonuclease subunit	Hypothetical protein	Type III restriction enzyme, res subunit	type III restriction enzyme, res subunit PFAM: type III restriction enzyme, res subunit KEGG: bbr:BB0913 type III restriction enzyme	Type III restriction-modification system, restriction endonuclease subunit	Type III restriction protein res subunit	Putative uncharacterized protein	Type III restriction enzyme	


HELPY01490	ATP-dependent DNA helicase recG	Putative ATP-dependent DNA helicase	Putative ATP-dependent DNA helicase, RecG	ATP-dependent DNA helicase	ATP-dependent DNA helicase recG	ATP-dependent DNA helicase protein	Residues 1 to 704 of 704 are 99 pct identical to residues 1 to 704 of a 704 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290232.1 DNA helicase, resolution of Holliday junctions, branch migration	ATP-dependent DNA helicase	ATP-dependent DNA helicase RecG	RecG ATP-dependent DNA helicase	ATP-dependent DNA helicase	identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643 ATP-dependent DNA helicase RecG	ATP-dependent DNA helicase RecG	ATP-dependent DNA recombinase RecG	Putative uncharacterized protein recG	ATP-dependent DNA helicase recG	identified by match to PFAM protein family HMM PF00270 ATP-dependent DNA helicase RecG	Putative ATP-dependent DNA helicase	best blastp match gb|AAK34520.1| (AE006605) putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS] putative ATP-dependent DNA helicase	Branch migration of Holliday junctions, junction-specific DNA helicase	ATP-dependent DNA helicase	ATP-dependent DNA helicase RecG	ATP-dependent DNA helicase recG	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00643 ATP-dependent DNA helicase RecG	ATP-dependent DNA helicase	Code: LK; COG: COG1200 DNA helicase	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM TIGR00643 ATP-dependent DNA helicase RecG	ATP-dependent DNA helicase RecG	resolution of Holliday junctions; branch migration; Code: LK; COG: COG1200 DNA helicase	
HELPY01491	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01493	Exodeoxyribonuclease	Putative exonuclease	Exodeoxyribonuclease III	Exodeoxyribonuclease III	Putative exodeoxyribonuclease	CDS_ID OB0511 exodeoxyribonuclease	similar to U38241-2|AAC44428.1| percent identity: 29 in 301 aa putative exodeoxyribonuclease	Exodeoxyribonuclease III	Exodeoxyribonuclease A	Exodeoxyribonuclease III	Exodeoxyribonuclease III	Exonuclease III	Putative exodeoxyribonuclease	Lin1894 protein	Exodeoxyribonuclease	Exodeoxyribonuclease III:Exodeoxyribonuclease III xth	Putative exodeoxyribonuclease III protein	Similar to exodeoxyribonuclease hypothetical protein	conserved gene exodeoxyribonuclease III	Similar to exodeoxyribonuclease hypothetical protein	Exodeoxyribonuclease III	Exodeoxyribonuclease III	Exodeoxyribonuclease	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 exodeoxyribonuclease III	exodeoxyribonuclease III	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark exodeoxyribonuclease III	COG0708 Exonuclease III exodeoxyribonuclease	Exodeoxyribonuclease LexA	Exodeoxyribonuclease III	
HELPY01492	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01494	Putative uncharacterized protein	periplasmic competence protein	conserved hypothetical protein hypothetical protein	Periplasmic competence protein	Periplasmic competence protein	Periplasmic competence protein comh	
HELPY01496	Chromosomal replication initiator protein dnaA	chromosomal replication initiator protein	chromosome replication initiator protein	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	CDS_ID OB0001 chromosomal replication initiation protein	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA 2	chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein D	
HELPY01497	Purine nucleoside phosphorylase	Putative uncharacterized protein	Putative	Putative uncharacterized protein	purine nucleoside phosphorylase	purine nucleoside phosphorylase	purine nucleoside phosphorylase (P51105) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Purine nucleoside phosphorylase	Purine nucleoside phosphorylase	Purine nucleoside phosphorylase	Purine nucleoside phosphorylase	Purine nucleoside phosphorylase	Purine nucleoside phosphorylase	Putative uncharacterized protein	Purine nucleoside phosphorylase	Putative purine nucleoside phosphorylase PunB	
HELPY01498	Uncharacterized protein HP_1531	Hypothetical protein JHP1419	hypothetical protein	conserved hypothetical protein (O26059) Hypothetical protein HP1531/JHP1419 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01499	Glucosamine--fructose-6-phosphate aminotransferase	L-glutamine-D-fructose-6-phosphate amidotransferase	Putative L-glutamine-D-fructose-6-phosphate amidotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	CDS_ID OB0235 L-glutamine-D-fructose-6-phosphate amidotransferase	similar to AJ000333-1|CAA04007.1| percent identity: 58 in 623 aa putative glutamine--fructose-6-phosphate transaminase [isomerizing]	Probable glutamine-fructose-6-phosphate transaminase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine-fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine-fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Residues 1 to 609 of 609 are 99 pct identical to residues 1 to 609 of a 609 aa protein from Escherichia coli K12 ref: NP_418185.1 L-glutamine:D-fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glutamine amidotransferase class-II:SIS domain	glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	Glucosamine--fructose-6-phosphate aminotransferase	
HELPY01500	Thymidylate synthase thyX	alternative thymidylate synthase	identified by match to protein family HMM PF02511 thymidylate synthase, flavin-dependent	Putative uncharacterized protein	Thymidylate synthase thyX	identified by match to protein family HMM PF02511 thymidylate synthase, flavin-dependent	thymidylate synthase ThyX	identified by similarity to SP:Q9UZ51; match to protein family HMM PF02511; match to protein family HMM TIGR02170 thymidylate synthase, flavin-dependent	Predicted alternative thymidylate synthase	Thymidylate synthase complementing protein ThyX	Thymidylate synthase complementing protein ThyX	thymidylate synthase	thymidylate synthase, flavin-dependent identified by similarity to SP:Q9UZ51; match to protein family HMM PF02511; match to protein family HMM TIGR02170	thymidylate synthase, flavin-dependent identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170	Thymidylate synthase complementing protein ThyX	thymidylate synthase (O26061) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)(O26061) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase) high confidence in function and specifity	thymidylate synthase, flavin-dependent identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170	Thymidylate synthase, flavin-dependent	Thymidylate synthase, flavin-dependent	Thymidylate synthase, flavin-dependent	Thymidylate synthase, flavin-dependent	Thymidylate synthase, flavin-dependent	Probable thymidylate synthase	Thymidylate synthase complementing protein	Thymidylate synthase, flavin-dependent	Thymidylate synthase, flavin-dependent	Thymidylate synthase, flavin-dependent	Thymidylate synthase, flavin-dependent	Thymidylate synthase, flavin-dependent	

HELPY01501	IS605 transposase	transposase, IS605 OrfB family TIGRFAM: transposase, IS605 OrfB family PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB KEGG: noc:Noc_1501 transposase	ISHa1675 transposase B	Transposase, IS605 OrfB family	
HELPY01502	IS605 transposase	IS200-type transposase	identified by match to protein family HMM PF01797 ISChy9, transposase orfA	Transposase IS200-like	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy putative transposase	Transposase IS200-like	IS605 family transposase orfA identified by match to protein family HMM PF01797	ISSoc10, orfA transposase identified by similarity to PIR:AI2478; match to protein family HMM PF01797	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: tfu:Tfu_1323 transposase-related protein	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: hma:rrnAC0815 probable transposase	transposase	transposase IS200-family protein PFAM: transposase IS200-family protein KEGG: mva:Mvan_1583 transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	Transposase	Putative uncharacterized protein	Transposase IS200-like protein	Transposase	Transposase IS200-family protein	Transposase IS200	Transposase IS200-family protein	Transposase IS200-family protein	Transposase IS200-family protein	

HELPY01504	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein Conserved hypothetical protein. Conservation to HPyl.Conserved hypothetical protein. Conservation to HPyl. conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	

HELPY01505	Cytochrome b	CYTOCHROME B	Cytochrome b	SC6G10.21c, qcrB, cytochrome B subunit, len: 545 aa; almost identical to one previously sequenced in Streptomyces lividans TR:G4154324 (EMBL:AF107888) (549 aa) fasta scores: opt: 3501, z-score: 3791.6, E(): 0, (95.5% identity in 550 aa overlap). Also similar to SW:QCRB_BACST cytochrome B subunit from Bacillus stearothermophilus (224 aa) fasta scores; opt: 409, z-score: 451.8, E(): 7.2e-18, (30.0% identity in 240 aa overlap). Contains Pfam match to entry PF00033 cytochrome_b_N, Cytochrome b(N-terminal)/b6/petB. Also contains several probable membrane spanning hydrophobic regions. cytochrome B subunit	Ubiquinol-cytochrome c reductase cytochrome b subunit	Cytochrome b	Cytochrome b	Cytochrome b	Cytochrome b	Similar to ubiquinol--cytochrome c reductase, cytochrome b hypothetical protein	conserved gene ubiquinol-cytochrome c reductase, cytochrome b	Similar to ubiquinol--cytochrome c reductase, cytochrome b hypothetical protein	identified by similarity to SP:P05418; match to protein family HMM PF00032; match to protein family HMM PF00033 ubiquinol--cytochrome c reductase, cytochrome B	Cytochrome b	Cytochrome b	identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033 ubiquinol--cytochrome c reductase, cytochrome b subunit	Cytochrome b	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ubiquinol cytochrome C oxidoreductase, cytochrome B subunit	Quinol-cytochrome c reductase, cytochrome b subunit	Cytochrome b subunit of the bc complex	Cytochrome b	similar to BR1542, ubiquinol-cytochrome c reductase, cytochrome b PetB, ubiquinol-cytochrome c reductase, cytochrome b	Cytochrome b	Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit	Cytochrome B	Similar to sp|O54070|CYB_RICPR sp|P23134|CYB_RHORU sp|P81378|CYB_RHOVI; Ortholog to ERGA_CDS_05170 Cytochrome B	COG3658 - cytochrome b; go_component: 0016020 cytochrome B	Cytochrome b	
HELPY01506	Ubiquinol-cytochrome c reductase iron-sulfur subunit	UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Similar to ubiquinol--cytochrome c reductase, iron-sulfur subunit hypothetical protein	conserved gene ubiquinol-cytochrome c reductase, iron-sulfur subunit	Similar to ubiquinol--cytochrome c reductase, iron-sulfur subunit hypothetical protein	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416 ubiquinol-cytochrome c reductase, iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416 ubiquinol--cytochrome c reductase, iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit	Rieske Fe-S protein	Ubiquinol-cytochrome c reductase iron-sulfur subunit	similar to BR1543, ubiquinol-cytochrome c reductase, iron-sulfur subunit ubiquinol-cytochrome c reductase, iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Similar to sp|Q9ZDQ5|UCRI_RICPR sp|P51130|UCRI_BRAJA sp|P23136|UCRI_RHORU rc||petA rp||petA; Ortholog to ERGA_CDS_05180 Ubiquinol-cytochrome C reductase iron-sulfur subunit	COG0723 QcrA Rieske Fe-S protein similar to EAA25593.1; go_process: 0006118 cytochrome B6-F complex iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Rieske Fe-S protein; COG0723 ubiquinol-cytochrome-c reductase	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome C reductase iron-sulfur subunit	
HELPY01507	Transcription-repair-coupling factor	Transcription-repair-coupling factor	Transcription-repair coupling factor	identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 transcription-repair coupling factor	transcription-repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 transcription-repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	transcription-repair coupling factor	Transcription-repair coupling factor	Ortholog of S. aureus MRSA252 (BX571856) SAR0504 putative transcription-repair coupling factor	transcription-repair coupling factor	identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; match to protein family HMM TIGR01612 transcription-repair coupling factor	Transcription-repair-coupling factor	transcription-repair coupling factor	Similar to Escherichia coli transcription-repair coupling factor Mfd SW:MFD_ECOLI (P30958) (1148 aa) fasta scores: E(): 2.1e-119, 37.169% id in 1095 aa, and to Bacillus subtilis transcription-repair coupling factor Mfd SW:MFD_BACSU (P37474) (1177 aa) fasta scores: E(): 1.2e-211, 49.490% id in 1176 aa putative transcription-repair coupling factor	Transcription-repair coupling factor	identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 transcription-repair coupling factor	similar to gi|27469198|ref|NP_765835.1| [Staphylococcus epidermidis ATCC 12228], percent identity 82 in 1169 aa, BLASTP E(): 0.0 transcription-repair coupling factor	Transcription-repair coupling factor	transcription-repair coupling factor identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580	transcription-repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	transcription-repair coupling factor	transcription-repair coupling factor	
HELPY01508	Putative uncharacterized protein	identified by similarity to OMNI:NTL01CJ01030; match to protein family HMM PF04519 conserved hypothetical protein	Putative uncharacterized protein	Putative	hypothetical protein	Putative uncharacterized protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type m : membrane component putative Integral membrane protein	Putative uncharacterized protein	Protein of unknown function DUF583	Hypothetical protein	hypothetical protein	Hypothetical protein	Integral membrane protein CcmA involved in cell shape determination	Protein of unknown function DUF583	protein of unknown function DUF583	protein of unknown function DUF583	hypothetical protein identified by match to protein family HMM PF04519	protein of unknown function DUF583 PFAM: protein of unknown function DUF583 KEGG: cjr:CJE1229 hypothetical protein	Hypothetical protein	conserved hypothetical protein Function unclear	conserved hypothetical protein identified by similarity to GB:AAS95264.1; match to protein family HMM PF04519	protein of unknown function DUF583 PFAM: protein of unknown function DUF583 KEGG: sfr:Sfri_3256 protein of unknown function DUF583	protein of unknown function DUF583 PFAM: protein of unknown function DUF583 KEGG: son:SO1662 hypothetical Ccm2-related protein	conserved hypothetical protein identified by match to protein family HMM PF04519	protein of unknown function DUF583 PFAM: protein of unknown function DUF583 KEGG: shm:Shewmr7_2678 protein of unknown function DUF583	hypothetical protein DUF583 PFAM: protein of unknown function DUF583 KEGG: ppr:PBPRA0655 hypothetical Ccm2-related protein	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	
HELPY01509	ToxR-activated gene	Membrane protein	Putative uncharacterized protein	identified by match to protein family HMM PF01551 peptidase, M23/M37 family	Membrane proteins related to metalloendopeptidases	Putative	TagE-like gene	Peptidase M23B	toxR-activated gene	Peptidase M23B	peptidase, M23/M37 family identified by match to protein family HMM PF01551	toxR-activated gene High confidence in function and specificity	Peptidase M23B precursor	peptidase, M23/M37 family identified by match to protein family HMM PF01551	Peptidase M23B	Peptidase, M23/M37 family	Peptidase M23B	TagE protein	Putative uncharacterized protein	ToxR-activated gene	Membrane protein	Putative membrane associated metallopeptidases	ToxR-activated protein	Peptidase, M23/M37 family	Membrane protein	Peptidase, M23/M37 family	Peptidase, M23/M37 family	Membrane-bound metallopeptidase	
HELPY01510	ToxR-activated gene	Putative	toxR-activated gene	peptidase M23B PFAM: peptidase M23B KEGG: tdn:Tmden_1568 peptidase M23B	toxR-activated gene Function unclear	Tox-R activated gene	ToxR-activated protein	Membrane-bound metallopeptidase	Zn-metallopeptidase, M23 family	
HELPY01511	Folylpolyglutamate synthase	folylpolyglutamate synthase	Putative folylpolyglutamate synthetase	Putative folyl-polyglutamate synthetase	FolC bifunctional protein	Folylpolyglutamate synthase/dihydrofolate synthase	Dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase	CDS_ID OB2058 folyl-polyglutamate synthase	Putative folylpolyglutamate synthase	Folylpolyglutamate synthetase, putative	Putative uncharacterized protein	Folylpolyglutamate synthase	Folylpolyglutamate synthase	Folylpolyglutamate synthase	Bifunctional protein folC	SCC88.25c, fpgS, folylpolyglutamate synthase, len: 444 aa; identical to previously sequenced TR:O08416 (EMBL:Y13070) Streptomyces coelicolor folylpolyglutamate synthase (EC 6.3.2.17), 444 aa and similar to SW:FOLC_BACSU (EMBL:L04520) Bacillus subtilis folylpolyglutamate synthase (EC 6.3.2.17), FolC, 430 aa; fasta scoreS: opt: 622 z-score: 688.7 E(): 6.1e-31; 32.0% identity in 438 aa overlap. Contains Pfam match to entry PF01225 Mur_ligase, Mur ligase family and matches to Prosite entries PS00398 Site-specific recombinases signature 2 and PS01012 Folylpolyglutamate synthase signature 2 folylpolyglutamate synthase	Folylpolyglutamate synthase	Folylpolyglutamate synthase	FolC protein	Residues 1 to 422 of 422 are 99 pct identical to residues 1 to 422 of a 422 aa protein from Escherichia coli K12 ref: NP_416818.1 dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase	Cytoplasmic peptidoglycan synthetases, C-terminal	Folylpolyglutamate synthase	Probable bifunctional protein: folylpolyglutamate synthase and dihydrofolate synthase	FolC bifunctional protein	Similar to dihydrofolate:folylpolyglutamate synthetase FolC hypothetical protein	conserved gene FolC bifunctional protein	Similar to dihydrofolate:folylpolyglutamate synthetase FolC hypothetical protein	Folylpolyglutamate synthase	identified by similarity to EGAD:12279; similarity to EGAD:42028; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499 folylpolyglutamate synthase/dihydrofolate synthase	
HELPY01512	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	conserved hypothetical protein hypothetical protein	lipoprotein, putative	Putative uncharacterized protein	Putative uncharacterized protein	Putative lipoprotein	Putative lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	Putative lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative lipoprotein	Conserved hypothetical lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01513	Leucyl-tRNA synthetase	leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Residues 1 to 891 of 891 are 99 pct identical to residues 17 to 907 of a 907 aa protein from Escherichia coli gb: AAB40843.1 leucine tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	leucyl-tRNA synthetase	conserved gene leucyl tRNA synthetase	leucyl-tRNA synthetase	leucyl-tRNA synthetase	identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396 leucyl-tRNA synthetase	
HELPY01514	Conserved hypothetical integral membrane protein	Putative	Putative uncharacterized protein	conserved hypothetical integral membrane protein	conserved hypothetical protein	conserved hypothetical protein KEGG: hhe:HH1649 hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	MacA	MacA	Integral membrane protein	
HELPY01515	Protein-export membrane protein secF	Putative uncharacterized protein secF	Protein-export membrane protein SecF	Translocase subunit SecF	Protein-export membrane protein SecF	Putative uncharacterized protein secF	Protein-export membrane protein secF	similar to AF038651-8|AAK19843.1| percent identity: 74 in 370 aa protein-export membrane protein secF	Protein translocase subunit	Putative uncharacterized protein secF	SecF	Protein-export membrane protein	SCL2.05c, secF, protein-export membrane protein, len: 373 aa; identical to previously sequenced SW:SECF_STRCO (EMBL:X85969) Streptomyces coelicolor protein-export membrane protein SecF, 373 aa and similar to SW:SECF_ECOLI (EMBL:X56175) Escherichia coli protein-export membrane protein SecF, 323 aa; fasta scores: opt: 488 z-score: 529.1 E(): 4.4e-22; 31.2% identity in 314 aa overlap. Contains possible hydrophobic membrane spanning regions protein-export membrane protein	Preprotein translocase subunit SecF	Protein-export membrane protein SecF	Preprotein translocase subunit SecF	Protein-export membrane protein secF	SecF	Residues 1 to 338 of 338 are 99 pct identical to residues 1 to 338 of a 338 aa protein from Escherichia coli gb: AAB40165.1 protein-export membrane protein secF	Protein-export membrane protein SecF	SecF; protein-export membrane protein	Probable-export membrane transmembrane protein	Protein-export membrane protein SecF	Similar to protein-export membrane protein SecF hypothetical protein	conserved gene protein export protein SecF	Similar to protein-export membrane protein SecF hypothetical protein	identified by match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966 protein-export membrane protein SecF	Protein-export membrane protein SecF	Protein-export membrane protein	
HELPY01516	Protein-export membrane protein secD	Protein-export membrane protein SecD	Protein-export membrane protein secD	Protein-export membrane protein SecD	Protein translocase subunit	Protein-export membrane protein secD	Preprotein translocase subunits SecD	SecD	Protein-export membrane protein	Preprotein translocase subunit SecD	Preprotein translocase subunit SecD	Protein-export membrane protein secD	Residues 1 to 615 of 615 are 99 pct identical to residues 1 to 615 of a 615 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286147.1 protein secretion; membrane protein, part of the channel	Protein-export membrane protein SecD	SecD/SecF/SecDF export membrane proteins	Probable-export membrane protein secd transmembrane	Protein-export membrane protein SecD	Similar to protein-export membrane protein SecD hypothetical protein	conserved gene protein export protein SecD	Similar to protein-export membrane protein SecD hypothetical protein	protein-export membrane protein SecD	identified by match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 protein-export membrane protein SecD	Protein-export membrane protein secD	Protein-export membrane protein	identified by similarity to SP:P19673; match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 protein-export membrane protein SecD	preprotein translocase subunit D	Protein-export membrane protein SecD	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark protein-export membrane protein	IPR000508: Signal peptidase; IPR003335: SecD/SecF/SecDF export membrane protein; IPR005791: SecD export membrane protein preprotein translocase, IISP family, part of the channel	
HELPY01517	UPF0092 membrane protein HP_1551	Residues 1 to 110 of 110 are 100 pct identical to residues 1 to 110 of a 110 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286146.1 orf, conserved hypothetical protein	Putative membrane protein	Probable transmembrane protein	identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 preprotein translocase, YajC subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark preprotein translocase YajC subunit	preprotein translocase IISP family, membrane subunit	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Putative uncharacterized protein	Preprotein translocase YajC subunit	Hypothetical UPF0092 protein JHP1448	Putative preprotein translocase IISP family, membrane subunit	Similar to sp|Q9ZCW9|Y585_RICPR rc||RC0893; Ortholog to ERGA_CDS_08130 Conserved hypothetical protein (may be related to translocase)	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative preprotein translocase IISP family, membrane subunit	Similar to Q8XFR4 (Q8XFR4) Putative membrane protein (Preprotein translocase IISP family, membrane subunit) from Salmonella typhi (110 aa). FASTA: opt: 347 Z-score: 458.8 E(): 1.2e-17 Smith-Waterman score: 347; 47.664 identity in 107 aa overlap. preprotein translocase family protein	Preprotein translocase IISP family, membrane subunit	preprotein translocase YajC subunit	YajC	Preprotein translocase YajC subunit	Code: U; COG: COG1862 conserved hypothetical protein	preprotein translocase, YajC subunit	Preprotein translocase subunit, YajC	Code: U; COG: COG1862 conserved hypothetical protein	preprotein translocase, YajC subunit identified by similarity to SP:Q9ZG87; match to protein family HMM PF02699; match to protein family HMM TIGR00739	Protein translocase subunit yajC	Code: U; COG: COG1862; orf conserved hypothetical protein	preprotein translocase subunit YajC	YajC	Probable transmembrane protein YajC	
HELPY01518	Na(+)/H(+) antiporter nhaA	Na(+)/H(+) antiporter nhaA	Na(+)/H(+) antiporter nhaA	Na(+)/H(+) antiporter nhaA	Na+/H+ antiporter	Na(+)/H(+) antiporter nhaA 1	Residues 1 to 388 of 388 are 99 pct identical to residues 1 to 388 of a 388 aa protein from Escherichia coli K12 ref: NP_414560.1 Na+ H antiporter, pH dependent	Na(+)/H(+) antiporter nhaA	Na(+)/H(+) antiporter nhaA	Na(+)/H(+) antiporter nhaA	similar to sodium-proton antiporter hypothetical protein	similar to sodium-proton antiporter hypothetical protein	identified by similarity to SP:P13738; match to protein family HMM TIGR00773 Na+/H+ antiporter NhaA	IPR000847: Bacterial regulatory protein LysR, HTH motif; IPR004670: Na+/H+ antiporter NhaA NhaA familiy of transport protein, Na+/H antiporter, pH dependent	similar to Salmonella typhi CT18 Na(+)/H(+) antiporter 1 Na(+)/H(+) antiporter 1	Na(+)/H(+) antiporter nhaA 2	NA(+)/H(+) ANTIPORTER 1	Na(+)/H(+) antiporter nhaA	COG3004 Na+/H+ antiporter	Na(+)/H(+) antiporter NhaA	Sodium/proton antiporter 1; Similar to: HI0225, NHAA_HAEIN Na(+)/H(+) antiporter 1	Similar to Bacteroides thetaiotaomicron Na+/H+ antiporter 1 BT0634 SWALL:AAO75741 (EMBL:AE016928) (439 aa) fasta scores: E(): 3.5e-135, 80.77% id in 437 aa, and to Escherichia coli Na(+)/H(+) antiporter 1 NhaA or Ant or B0019 SWALL:NHAA_ECOLI (SWALL:P13738) (388 aa) fasta scores: E(): 3.1e-35, 41.58% id in 428 aa putative Na+/H+ antiporter	Na+/H+ antiporter NhaA protein	Na(+)/H(+) antiporter nhaA 1	Similar to NHAA_ECOLI (P13738) Na(+)/H(+) antiporter 1 from E. coli (388 aa). FASTA: opt: 1081 Z-score: 1213.2 E(): 1.1e-59 Smith-Waterman score: 1081; 46.966 identity in 379 aa overlap Na(+)/H(+) antiporter 1	Na(+)/H(+) antiporter nhaA	Na+/H+ antiporter 1 (exchanging protein)	Na+/H+ antiporter 1	identified by match to protein family HMM PF06965; match to protein family HMM TIGR00773 Na+/H+ antiporter NhaA	
HELPY01519	Helicase	identified by similarity to PIR:A71805; match to protein family HMM PF00580 ATP-dependent DNA helicase, UvrD/REP family	Putative helicase	Putative ATP-DEPENDENT HELICASE	Similar to Bacteroides thetaiotaomicron ATP-dependent helicase BT1054 SWALL:AAO76161 (EMBL:AE016930) (1057 aa) fasta scores: E(): 0, 77.86% id in 1057 aa, and to Lactococcus lactis subunit A of ATP-dependent exonuclease RexA or LL0004 SWALL:Q9CJI9 (EMBL:AE006239) (1203 aa) fasta scores: E(): 6.4e-11, 24.95% id in 1090 aa putative helicase	ATP-dependent exoDNAse (Exonuclease V) beta subunit	ATP-dependent helicase	UvrD/REP helicase	ATP-dependent nuclease	ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	UvrD/REP family helicase	UvrD/REP helicase PFAM: UvrD/REP helicase KEGG: btk:BT9727_1041 ATP-dependent nuclease, subunit A	ATP-dependent DNA helicase, UvrD/REP family identified by match to protein family HMM PF00580	ATP-dependent nuclease subunit A (Q89AB3) Exodeoxyribonuclease V beta chain (EC 3.1.11.5) Function unclear	ATP-dependent DNA helicase, UvrD/REP family identified by match to protein family HMM PF00580	ATP-dependent helicase	ATP-dependent helicase	ATP-dependent DNA helicase, UvrD/REP family	UvrD/REP helicase	ATP-dependent DNA helicase	Probable ATP-dependent DNA helicase, UvrD/REP family	ATP-dependent DNA helicase, UvrD/REP family	ATP-dependent helicase	ATP-dependent DNA helicase, UvrD/REP family	ATP-dependent helicase	Putative helicase	ATP-dependent helicase	ATP-dependent DNA helicase, UvrD/REP family	ATP-dependent nuclease subunit A	
HELPY01520	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	CDS_ID OB1586 30S ribosomal protein S2	30S ribosomal protein S2	similar to AL023797-41|CAA19416.1| percent identity: 66 in 276 aa putative 30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	
HELPY01521	Elongation factor Ts	translation elongation factor Ts (EF-Ts)	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	CDS_ID OB1587 elongation factor EF-Ts	Elongation factor Ts	similar to AE007118-19|AAK47282.1| percent identity: 64 in 275 aa putative translation elongation factor EF-Ts	Elongation factor Ts	elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	SC2E1.42, tsf, elongation factor Ts, len: 278.  Almost identical to EFTS_STRCO elongation factor TS (EF-TS) (276 aa), fasta scores; opt: 1695 z-score: 2425.0 E(): 0, 97.8% identity in 278 aa overlap and highly similar to many others e.g. EFTS_ECOLI (282 aa), fasta scores; opt: 321 z-score: 681.2 E(): 1e-30, 38.4% identity in 276 aa overlap. Contains PS01126 Elongation factor Ts signature 1 elongation factor Ts	
HELPY01522	Cell division protein	Putative penicillin-binding protein	Putative penicillin binding protein 2X	Penicillin-binding protein	Cell division protein FtsI/penicillin-binding protein 2	Putative penicillin-binding protein 2X	Putative penicillin-binding (Cell division related) protein	CDS_ID OB1465; soprulation specific penicillin-binding protein; spore cortex stage V sporulation protein D	similar to AB041009-1|BAB15945.1| percent identity: 77 in 714 aa penicillin-binding protein	Penicillin-binding protein	Penicillin binding protein, transpeptidase domain	Peptidoglycan synthetase ftsI	SC4A10.23c, ftsI, cell division protein, len: 654 aa; previously sequenced as TR:Q9Z5V7 (EMBL:AF123319), FtsI, Streptomyces coelicolor cell division protein (651 aa) and identical to that sequence, but with a different putative start codon. C-terminal end shares weak similarity with others from S.coelicolor e.g. SC6G9.32 (EMBL:AL079356) S.coelicolor possible penicillin-binding protein (485 aa) (29.3% identity in 447 aa overlap).  Contains a hydrophobic, possible membrane-spanning region.  Contains Pfam match to entry PF00905 Transpeptidase, Penicillin binding protein transpeptidase domain and two PS00017 ATP/GTP-binding site motif A (P-loop) cell division protein	Transglycolase/transpeptidase	Penicillin binding protein transpeptidase domain	Penicillin-binding protein 1	Probable penicillin-binding 3 pbp-3 transmembrane protein	Peptidoglycan synthetase ftsI	Peptidoglycan synthetase FtsI precursor	conserved gene penicillin binding protein 3	Peptidoglycan synthetase FtsI precursor	cell division protein; FtsI Division specific D,D-transpeptidase	penicillin-binding protein	Penicillin-binding protein 3	penicillin binding protein 2X	Cell division protein FtsI/penicillin-binding protein 2	identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717 penicillin-binding protein	InterProMatches:IPR005311; required for spore morphogenesis (spore cortex), Molecular Function: penicillin binding (GO:0008658) penicillin-binding protein	Penicillin-binding protein 3	
HELPY01523	Flagellar hook-basal body complex protein fliE	CDS_ID OB1554 flagellar hook-basal body protein	Flagellar hook-basal body complex protein fliE	Flagellar hook-basal body protein	identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205 flagellar hook-basal body complex protein FliE	InterProMatches:IPR001624; Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: flagellum (sensu Bacteria) (GO:0009288) flagellar hook-basal body protein	flagellar hook-basal body complex protein FliE	Flagellar hook-basal body complex protein fliE	Flagellar hook-basal body complex protein fliE	Flagellar hook-basal body complex protein FliE	identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205 flagellar hook-basal body complex protein FliE	Flagellar hook-basal body complex protein FliE	Flagellar hook-basal body complex protein FliE	Flagellar hook-basal body complex protein FliE	flagellar hook-basal body complex protein (FliE) identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205	Flagellar hook-basal body complex protein FliE	flagellar hook-basal body complex protein (FliE) TIGRFAMsMatches:TIGR00205	flagellar basal-body protein	Flagellar hook-basal body protein	hypothetical protein similarity to COG1677 Flagellar hook-basal body protein	flagellar hook-basal body complex protein	flagellar hook-basal body complex protein (FliE) identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205	Flagellar hook-basal body complex subunit FliE	(O26079) Flagellar hook-basal body complex protein fliE(O26079) Flagellar hook-basal body complex protein fliE High confidence in function and specificity	flagellar hook-basal body complex subunit FliE TIGRFAM: flagellar hook-basal body complex subunit FliE PFAM: flagellar hook-basal body complex protein FliE KEGG: gsu:GSU0409 flagellar hook-basal body complex protein FliE	flagellar hook-basal body complex protein (FliE)	flagellar hook-basal body complex protein FliE identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205	Flagellar hook-basal body complex subunit FliE	Flagellar hook-basal body protein	
HELPY01524	Flagellar basal-body rod protein	Flagellar basal-body rod protein FlgC	FLAGELLAR BASAL-BODY ROD PROTEIN FLGC	Flagellar basal-body rod protein flgC	CDS_ID OB1553 flagellar basal-body rod protein	flagellar basal-body rod protein flgC	Flagellar basal-body rod protein FlgC	Flagellar basal-body rod protein flgC	Flagellar basal body rod protein FlgC	Flagellar basal-body rod protein	Flagellar basal-body rod protein flgC	Flagellar basal body rod protein	Flagellar basal body rod protein FlgC	Lin0719 protein	Flagellar basal-body rod protein	Flagella basal body rod protein	FlgC protein	Probable flagellar basal-body rod protein flgc	Flagellar basal-body rod protein FlgC	Flagellar basal-body rod protein FlgC	conserved gene flagellar basal body rod protein FlgC	Flagellar basal-body rod protein FlgC	identified by similarity to SP:P24501; match to protein family HMM PF00460; match to protein family HMM TIGR01395 flagellar basal-body rod protein FlgC	Flagellar basal-body rod protein	InterProMatches:IPR006299; Cellular Component: flagellum (GO:0019861) flagellar basal-body rod protein	flagellar basal-body rod protein FlgC	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark flagellar biosynthesis cell-proximal portion of basal-body rod	IPR001444: Flagellar basal body rod protein flagellar biosynthesis, cell-proximal portion of basal-body rod	similar to Salmonella typhi CT18 putative flagellar basal-body rod protein FlgC (proximal rod protein) putative flagellar basal-body rod protein FlgC (proximal rod protein)	
HELPY01525	Flagellar basal-body rod protein	Flagellar biosynthesis, cell-proximal portion of basal-body rod	CDS_ID OB1552 flagellar basal-body rod protein	Flagellar basal-body rod protein	Residues 1 to 138 of 138 are 100 pct identical to residues 1 to 138 of a 138 aa protein from Escherichia coli K12 ref: NP_415591.1 flagellar biosynthesis, cell-proximal portion of basal-body rod	Flagellar basal-body rod protein FlgB	FlgB protein	Flagellar basal-body rod protein FlgB	Flagellar basal-body rod protein FlgB	conserved gene flagellar basal body rod protein FlgB	Flagellar basal-body rod protein FlgB	identified by similarity to SP:P75934; match to protein family HMM TIGR01396 flagellar basal-body rod protein FlgB	InterProMatches:IPR006300; Cellular Component: flagellum (GO:0019861) flagellar basal-body rod protein	flagellar basal-body rod protein FlgB	IPR001444: Flagellar basal body rod protein flagellar biosynthesis, cell-proximal portion of basal-body rod	similar to Salmonella typhi CT18 putative flagellar basal-body rod protein FlgB (proximal rod protein) putative flagellar basal-body rod protein FlgB (proximal rod protein)	Flagellar basal body rod protein FlgB	Flagellar protein	FLAGELLAR BASAL-BODY ROD PROTEIN	Flagellar basal-body rod protein FlgB	Flagellar basal-body rod protein	Flagellar basal-body rod protein FlgB	Flagellar basal-body rod protein flgB	identified by match to protein family HMM PF00460; match to protein family HMM TIGR01396 flagellar basal-body rod protein FlgB	identified by match to protein family HMM PF00460; match to protein family HMM TIGR01396 flagellar basal-body rod protein FlgB	identified by match to protein family HMM PF00460; match to protein family HMM TIGR01396 flagellar basal-body rod protein FlgB	Flagellar basal-body rod protein FlgB	Flagellar basal-body rod protein FlgB	Code: N; COG: COG1815 flagellar protein for cell-proximal portion of basal-body rod	
HELPY01526	Probable cell division protein ftsW	Cell division protein FtsW	Putative cell division protein ftsW	cell division protein	Cell division protein	Stage V sporulation protein E	Cell division protein FtsW	Cell cycle proteins	FtsW protein	identified by similarity to SP:P16457; match to protein family HMM PF01098 cell division protein FtsW	Cell division protein ftsW	InterProMatches:IPR001182, IPR006162; required for spore cortex peptidoglycan synthesis, Biological Process: cell cycle (GO:0007049), Cellular Component: integral to membrane (GO:0016021) SpoVE	stage V sporulation protein E	Putative cell division protein FtsW	similar to BR1432, cell division protein FtsW FtsW, cell division protein	Probable cell division protein ftsW	Cell division membrane protein FtsW	COG0772 FtsW bacterial cell division membrane protein similar to NP_220792.1 cell division protein	Similar to: HI1137, FTSW_HAEIN Cell division protein FtsW	Bacterial cell division membrane protein FtsW protein	Cell division protein ftsW	Cell division protein FtsW	stage V sporulation protein E	cell division protein FtsW	Cell division protein FtsW	Cell cycle protein	Cell cycle protein:Phosphopantetheine attachment site	Integral membrane protein. Inner membrane.  (predicted) Gene in the dcw cluster. Citation: Khattar et al. 1994. J. Bacteriol. 176: 7140-7147. cell division protein FtsW	cell division protein FtsW, putative identified by match to protein family HMM PF01098	
HELPY01527	Iron(III) ABC transporter, periplasmic iron- binding protein	iron(III) ABC transporter, periplasmic iron-binding protein	periplasmic binding protein	Periplasmic binding protein	Iron chelatin ABC transporter, substrate binding protein	Periplasmic binding protein precursor	Iron(III) ABC transporter, periplasmic iron- binding protein	Iron ion ABC transporter, periplasmic component	Periplasmic binding protein	ABC-type iron(III) transporter, periplasmic binding protein	ABC-type transport system, periplasmic component; putative signal peptide	
HELPY01528	Iron(III) ABC transporter, periplasmic iron- binding protein	iron(III) ABC transporter, periplasmic iron-binding protein	PFAM: periplasmic binding protein KEGG: dps:DP2980 probable iron (III) ABC transporter, periplasmic-binding protein periplasmic binding protein	Periplasmic binding protein precursor	Putative uncharacterized protein	Iron (III) ABC transporter, periplasmic iron- bindin gprotein	Periplasmic binding protein	Fbp2	
HELPY01529	Probable peroxiredoxin	Antioxidant, AhpC/Tsa family	Probable proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant	Thioredoxin peroxidase	Probable peroxiredoxin	Peroxiredoxin	THIOREDOXIN PEROXIDASE 1	Peroxiredoxin	Thio-Specific Antioxidant (TSA) Peroxidase	Putative alkyl hydroperoxide reductase subunit c	AhpC protein	Alkyl hydroperoxide reductase, small subunit	alkyl hydroperoxide reductase	conserved gene peroxynitrite reductase, AhpC/Tsa family	alkyl hydroperoxide reductase	thioredoxin peroxidase	Probable peroxidase	Peroxiredoxin, AhpC/TSA family	identified by similarity to OMNI:NTL01CJ00310; match to protein family HMM PF00578 antioxidant, AhpC/Tsa family	Alkyl hydroperoxide reductase C22 protein	putative thiol-alkyl hydroperoxide reductase	Peroxiredoxin	similar to Salmonella typhi CT18 probable peroxidase probable peroxidase	Similar to Chlamydia pneumoniae thio-specific antioxidant AhpC or cpn0778 SWALL:Q9Z7C8 (EMBL:AE001659) (196 aa) fasta scores: E(): 1.9e-57, 72.91% id in 192 aa, and to Homo sapiens peroxiredoxin 2 PrdX2 or TdpX1 or NkeFB SWALL:PDX2_HUMAN (SWALL:P32119) (198 aa) fasta scores: E(): 3.9e-38, 49.73% id in 191 aa putative alkyl hydroperoxide reductase	Alkyl hydroperoxide reductase TsaA	Probable peroxiredoxin	Putative alkyl hydroperoxide reductase subunit C	thioredoxin peroxidase	Similar to rp||tdpX1 rc||tdpX1 sp|P21762|TSAA_HELPY sp|P56876|TSAA_HELPJ; Ortholog to ERGA_CDS_03510 Probable peroxiredoxin (26 kDa antigen)	
HELPY01530	Outer membrane protein	D-methionine-binding lipoprotein metQ	Putative ABC transporter substrate binding protein yaeC	Lipoprotein, attached to the cytoplasmic membrane, NLPA family	SCL11.13c, possible lipoprotein, len: 275 aa; similar to TR:AAD51879 (EMBL:AF102556) Salmonella enteritidis liporpotein SfbA, 276 aa; fasta scores: opt: 519 z-score: 578.9 E(): 8e-25; 38.0% identity in 258 aa overlap. Contains correctly situated match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site and possible N-terminal region signal peptide sequence putative lipoprotein	Residues 1 to 271 of 271 are 99 pct identical to residues 1 to 271 of a 271 aa protein from Escherichia coli K12 ref: NP_414739.1 putative lipoprotein	D-methionine-binding periplasmic protein MetQ	Outer membrane protein	putative outer membrane lipoprotein	similar to Salmonella typhi CT18 putative lipoprotein precursor putative lipoprotein precursor	Similar to many including: Pasteurella haemolytica outer membrane lipoprotein 3 precursor PlpC SWALL:PLPC_PASHA (SWALL:Q08870) (263 aa) fasta scores: E(): 2.5e-15, 29.47% id in 268 aa and Streptomyces coelicolor putative lipoprotein sco1557 or scl11.13C SWALL:Q9L1C5 (EMBL:AL939109) (275 aa) fasta scores: E(): 7.3e-25, 35.95% id in 267 aa putative lipoprotein	Putative uncharacterized protein	Outer membrane protein	Putative Outer membrane protein	Similar to: HI0620, METQ_HAEIN probable D-methionine-binding lipoprotein MetQ	D-methionine-binding lipoprotein metQ	outer membrane protein	Lipoprotein YaeC	ABC transport system substrate-binding protein	Code: P; COG: COG1464 putative lipoprotein	identified by match to protein family HMM PF03180 lipoprotein, NLPA family	Code: P; COG: COG1464 putative lipoprotein	putative exported protein Also similar to BAV2852 (55.8 38d.)	putative lipoprotein	Lipoprotein YaeC	Code: P; COG: COG1464 putative lipoprotein	outer membrane protein	Lipoprotein YaeC precursor	outer membrane lipoprotein	

HELPY01531	Penicillin-binding protein 2	Penicillin-binding protein 2	Penicillin-binding protein	Cell elongation specific D,D-transpeptidase	Penicillin-binding protein 3	SCC88.19c, pbp2, penicillin binding protein, len: 769 aa; almost identical to previously sequenced TR:O33622 (EMBL:Y14206) Streptomyces coelicolor Pbp protein and similar to SW:PBP2_ECOLI (EMBL:X04516) Escherichia coli penicillin-binding protein 2 (Pbp-2), 633 aa; fasta scores: opt: 226 z-score: 236.5 E(): 9.3e-06; 27.9% identity in 692 aa overlap. Contains Pfam match to entry PF00905 Transpeptidase, Penicillin binding protein transpeptidase domain penicillin binding protein	Penicillin-binding protein	Penicillin-binding protein	Residues 1 to 633 of 633 are 99 pct identical to residues 1 to 633 of a 633 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286361.1 cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2	Penicillin binding protein transpeptidase domain	Penicillin binding protein 2 prime	MrdA protein	Probable substrate-binding transmembrane protein	identified by similarity to EGAD:16370; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 penicillin-binding protein 2'	identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 penicillin-binding protein 2	Cell division protein FtsI/penicillin-binding protein 2	identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 penicillin-binding protein 2	InterProMatches:IPR005311; Molecular Function: penicillin binding (GO:0008658) penicillin-binding protein 3	Penicillin-binding protein 2	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark penicillin-binding protein 2	Penicillin-binding protein 2/cell division protein FtsI	Penicillin-binding protein	Penicillin-binding protein 2	penicillin binding protein 2 prime	PENICILLIN-BINDING PROTEIN	penicillin binding protein 2 prime	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 penicillin-binding protein	COG0768 FtsI cell division protein FtsI/penicillin-binding protein 2 penicillin-binding protein	Penicillin-binding protein 2	
HELPY01532	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01533	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	GTP-binding protein	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	GTP-binding protein cgpa	Probable GTP-binding protein engB	Residues 1 to 210 of 210 are 99 pct identical to residues 1 to 210 of a 210 aa protein ENGB_ECOLI sp: P24253 probable GTP-binding protein EngB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	identified by match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 GTP-binding protein	GTP-binding protein	COG0218 Predicted GTPase GTP-binding protein ENGB family	IPR005289: GTP-binding domain putative GTPase, involved in coordination of cell cycle	similar to Salmonella typhi CT18 ATP/GTP-binding protein ATP/GTP-binding protein	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	
HELPY01534	Putative uncharacterized protein	Putative uncharacterized protein	Putative	OstA-like protein	hypothetical protein	OstA family protein identified by match to protein family HMM PF03968	conserved hypothetical protein (P06473) Glycoprotein B precursor(P06473) Glycoprotein B precursor conserved hypothetical protein	OstA family protein identified by match to protein family HMM PF03968	Putative uncharacterized protein	Putative uncharacterized protein	OstA family protein	Putative uncharacterized protein	OstA family protein	Cell envelope biogenesis protein YhbN	Lipopolysaccharide transport periplasmic protein LptA	OstA family protein	Putative uncharacterized protein	Putative uncharacterized protein	Cell envelope biogenesis protein YhbN	OstA family protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01535	Putative uncharacterized protein	Putative	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein (P39631) Spore coat polysaccharide biosynthesis protein spsK(P39631) Spore coat polysaccharide biosynthesis protein spsK conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01536	Putative uncharacterized protein	Phosphatase, YrbI family	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	3-deoxy-manno-octulosonate-8-phosphatase	Low specificity phosphatase	Residues 1 to 188 of 188 are 99 pct identical to residues 1 to 188 of a 188 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289772.1 orf, conserved hypothetical protein	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	Probable 3-deoxy-d-manno-octulosonate 8- phosphate(Kdo 8-p)phosphatase protein	Similar to ABC transporter	Similar to conserved hypothetical protein hypothetical protein	conserved gene hydrolase, HAD superfamily, subfamily III A	Similar to conserved hypothetical protein hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 phosphatase, YrbI family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	IPR006549: HAD-superfamily hydrolase, subfamily IIIA putative protein of HAD superfamily, CMP-Neu5Ac homologs	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative	Putative uncharacterized protein	Hypothetical protein	conserved hypothetical protein	Phosphatase, YrbI family	KDO 8-P phosphatase; Similar to: HI1679, KDOP_HAEIN 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	Similar to Porphyromonas gingivalis W83 phosphatase, YrbI family PG0658 SWALL:AAQ65837 (EMBL:AE017174) (173 aa) fasta scores: E(): 1.2e-30, 51.44% id in 173 aa, and to Escherichia coli, and Escherichia coli O157:H7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC or B3198 or Z4561 or ECS4077 SWALL:KDSC_ECOLI (SWALL:P45396) (188 aa) fasta scores: E(): 1.3e-14, 37.03% id in 162 aa putative lipopolysaccharide biosynthesis-related protein	Uncharacterized proteins of HAD superfamily, CMP-Neu5Ac similarity Hypothetical protein	
HELPY01537	RlpA-like lipoprotein	Putative rare lipoprotein A	identified by similarity to SP:Q9ZJ38; match to protein family HMM PF03330; match to protein family HMM TIGR00413 rare lipoprotein A	Rare lipoprotein A	RlpA-like lipoprotein precursor	similar to rare lipoprotein A	Lipoprotein COG0797	rare lipoprotein A	RlpA-like lipoprotein non-cytoplasmic protein	RlpA-like lipoprotein non-cytoplasmic protein	rAre lipoprotein a rlpa identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413	rare lipoprotein A RlpA-like lipoprotein precursor High confidence in function and specificity	rare lipoprotein A TIGRFAM: rare lipoprotein A PFAM: Rare lipoprotein A; Sporulation domain protein KEGG: neu:NE2065 putative rare lipoprotein A	rare lipoprotein A identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413	Putative uncharacterized protein	Putative uncharacterized protein	Rare lipoprotein A	Putative lipoprotein	Rare lipoprotein A precursor	30S ribosomal protein S16	RAre lipoprotein A rlpa	RAre lipoprotein A rlpa	RlpA-like lipoprotein	Putative lipoprotein; putative signal peptide	Rare lipoprotein A	Rare lipoprotein A	Rare lipoprotein A	RlpA-like lipoprotein	Rare lipoprotein A	
HELPY01538	Regulatory protein DniR	Transglycosylase, SLT family	Membrane-bound lytic murein transglycosylase D	Residues 1 to 402 of 402 are 98 pct identical to residues 47 to 452 of a 452 aa protein from Escherichia coli K12 ref: NP_414747.1 transcriptional regulator for nitrite reductase (cytochrome c552)	Membrane-bound lytic murein transglycosylase D	identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476 membrane-bound lytic murein transglycosylase D, putative	IPR000189: Prokaryotic transglycosylase, active site transcriptional regulator for nitrite reductase (cytochrome c552)	similar to Salmonella typhi Ty2 membrane-bound lytic murein transglycosylase d precursor membrane-bound lytic murein transglycosylase d precursor	Putative uncharacterized protein dniR	Putative REGULATORY PROTEIN	Similar to Photorhabdus luminescens membrane-bound lytic murein transglycosylase MltD SWALL:Q8GF74 (EMBL:AF346500) (454 aa) fasta scores: E(): 1.7e-21, 30.23% id in 377 aa, and to Bacteroides thetaiotaomicron membrane-bound lytic murein transglycosylase D presursor BT3999 SWALL:Q8A0M2 (EMBL:AE016943) (431 aa) fasta scores: E(): 5.6e-149, 81.94% id in 432 aa, and to Chlorobium tepidum membrane-bound lytic murein transglycosylase, putative CT0979 SWALL:Q8KDR6 (EMBL:AE012862) (536 aa) fasta scores: E(): 5.5e-59, 44.62% id in 363 aa putative lytic murein transglycosylase	Transcriptional regulator for nitrite reductase	identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476 membrane-bound lytic murein transglycosylase, putative	Lytic transglycosylase	Lytic transglycosylase, catalytic	regulatory protein DniR	regulatory protein dnir identified by match to protein family HMM PF01464; match to protein family HMM PF01476	regulatory protein DniR Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) (Murein hydrolase D) (Regulatory protein dniR)Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) (Murein hydrolase D) (Regulatory protein dniR) High confidence in function and specificity	membrane-bound lytic murein transglycosylase D, putative identified by match to protein family HMM PF01464; match to protein family HMM PF01476	Glycoside hydrolase family 23	Membrane-bound lytic murein transglycosylase D	transglycosylase, Slt family KEGG: son:SO4017 transglycosylase, Slt family	Membrane-bound lytic murein transglycosylase D	Putative membrane-bound lytic murein transglycosylase D	Putative secreted transglycosylase	Putative lytic murein transglycosylase	Putative Signal recognition particle protein	Membrane-bound lytic murein transglycosylase D	Regulatory protein dnir	
HELPY01539	Putative uncharacterized protein	Putative DNase	Hydrolase, TatD family	DNase	Putative uncharacterized protein MYPE8110	SEC-INDEPENDENT PROTEIN TATD	Putative deoxyribonuclease	Putative deoxyribonuclease	Putative uncharacterized protein	Uncharacterized deoxyribonuclease ycfH	CDS_ID OB0047 hypothetical protein	Putative uncharacterized protein MYPU_0140	Putative deoxyribonuclease TatD	hypothetical protein	DNase, TatD family	Possible deoxyribonuclease	PHP superfamily hydrolase, YABD ortholog	BH0054 protein	Uncharacterized deoxyribonuclease BU355	Mg2+ dependent DNAse	Deoxyribonuclease, TatD family	SCE87.02c, unknown, len: 296 aa. Highly similar to many hypothetical proteins including: Mycobacterium tuberculosis TR:O08343 (EMBL: Z94752) hypothetical protein YcfH (264 aa), fasta scores opt: 576 z-score: 667.6 E(): 8.2e-30 42.7% identity in 279 aa overlap and Escherichia coli SW:YCFH_ECOLI (EMBL:AE000210) hypothetical 29.8 KD protein (265 aa), fasta scores opt: 477 z-score: 554.2 E(): 1.7e-23 37.0% identity in 276 aa overlap. Contains a Pfam match to entry PF01026 UPF0006, Uncharacterized protein family conserved hypothetical protein SCE87.02c	Mg-dependent DNase	Mg-dependent DNase	Putative uncharacterized protein RP682	Lin0224 protein	hypothetical protein	Putative uncharacterized protein	Residues 21 to 285 of 285 are 97 pct identical to residues 1 to 265 of a 265 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287234.1 orf, conserved hypothetical protein	
HELPY01540	Riboflavin synthase alpha subunit	riboflavin synthase alpha chain	riboflavin synthasealpha subunit	Putative riboflavin synthase alpha subunit	Riboflavin synthase, alpha subunit	Riboflavin synthase alpha chain	RIBOFLAVIN SYNTHASE ALPHA CHAIN	Riboflavin synthase, alpha subunit	Riboflavin synthase alpha chain	CDS_ID OB3215 riboflavin synthase alpha chain	similar to AL583918-159|CAC30066.1| percent identity: 57 in 204 aa putative riboflavin synthase alpha chain	Probablep riboflavin synthase alpha chain	riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Riboflavin synthase, alpha chain	Riboflavin synthase alpha subunit	SC6D7A.06c, probable riboflavin synthase, len: 200 aa; similar to SW:RISA_ACTPL (EMBL:U27202) Actinobacillus pleuropneumoniae riboflavin synthase alpha chain (EC 2.5.1.9) RibE or RibB, 215 aa; fasta scores: opt: 607 z-score: 734.5 E(): 0; 50.3% identity in 193 aa overlap.  Contains 2x Pfam matches to entry PF00677 Lum_binding, Lumazine binding domain and match to Prosite entry PS00693 Riboflavin synthase alpha chain family signature putative riboflavin synthase	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain family lumazine binding domain	riboflavin synthase, alpha subunit	Riboflavin synthase alpha chain	Probable riboflavin synthase (Alpha chain) protein	Riboflavin synthase alpha chain	
HELPY01541	ABC transporter, putative	Flagellar biosynthetic protein FlhB domain protein	Type III secretion proteins, related to flagellar biosynthesis protein FlhB	Flagellar biosynthesis related protein	Possible similar to flagellar biosynthetic protein	similar to FlhB protein, putative part of export apparatus for flagellar proteins hypothetical protein	Probable flagellar biosynthesis-related protein	identified by match to protein family HMM TIGR00789 FlhB domain protein	hypothetical protein	Flagellar basal body protein FlhB	Putative FLAGELLAR BIOSYNTHESIS PROTEIN	putative flagellar protein	possible flagellar biosynthetic protein	type III secretion proteins, related to flagellar biosynthesis protein FlhB	Putative cytoplasmic domain of flagellar protein	FlhB domain protein, putative	putative flagellar biosynthesis protein	flagellar biosynthetic protein-like protein	type III secretion protein related to flagellar biosynthesis protein FlhB	flagellar protein FhlB-like protein similar to the cytoplasmic domain of flagellar protein FhlB-like protein	FlhB domain protein	putative flagellar protein FhlB	Putative flagellar protein FhlB	type III secretion protein related to flagellar biosynthesis protein FlhB	flagellar biosynthetic protein FlhB domain protein	type III secretion proteins, related to flagellar biosynthesis protein FlhB	FlhB-related flagellar biosynthesis protein	hypothetical protein similarity to COG2257 Uncharacterized BCR homologous to the cytoplasmic domain of flagellar protein FhlB	type III secretion proteins, related to flagellar biosynthesis protein FlhB	
HELPY01542	Methionine import ATP-binding protein metN	Methionine import ATP-binding protein metN	Methionine import ATP-binding protein metN	Methionine import ATP-binding protein metN	Methionine import ATP-binding protein metN	Methionine import ATP-binding protein metN	CDS_ID OB2100 ABC transporter ATP-binding protein	similar to AX066781-1|CAC26618.1| percent identity: 83 in 359 aa putative ABC transporter ATP-binding protein	Methionine import ATP-binding protein metN	SCL11.15c, probable ABC transporter ATP-binding protein, len: 368 aa; similar to SW:ABC_ECOLI (EMBL:L08626) Escherichia coli ATP-binding protein Abc, 343 aa; fasta scores: opt: 909 z-score: 1006.2 E(): 0; 49.1% identity in 346 aa overlap. Contains Pfam match to entry PF00005 ABC_tran, ABC transporte and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature putative ABC transporter ATP-binding protein	Methionine import ATP-binding protein metN	Residues 1 to 343 of 343 are 99 pct identical to residues 1 to 343 of a 343 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285893.1 ATP-binding component of a transporter	Methionine import ATP-binding protein metN 2	Methionine import ATP-binding protein metN	ABC transporter ATP-binding protein	ABC transporter ATP binding protein	identified by similarity to GB:AAO35916.1; match to protein family HMM PF00005 ABC transporter, ATP-binding protein	Amino acid ABC transporter	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ABC transporter ATP-binding protein	ABC transporter ATP binding protein	Methionine import ATP-binding protein metN	IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter putative ABC superfamily (atp_bind) transport system	similar to Salmonella typhi CT18 putative ABC transporter ATP-binding protein putative ABC transporter ATP-binding protein	Methionine import ATP-binding protein metN	Methionine import ATP-binding protein metN	Abc transporter, ATP-binding protein	Methionine import ATP-binding protein metN 1	Methionine import ATP-binding protein metN	Putative ABC transporter ATP-binding protein - unknown substrate	
HELPY01543	ABC transporter, permease protein	D-methionine ABC transporter, permease protein	ABC transporter, permease protein	Probable ABC transporter permease yaeE	ABC transporter, permease protein	Methionine transport system permease protein	Putative ABC transporter, permease protein	ABC transporter, permease component	BH3480 protein	SCL11.14c, probable ABC transporter permease protein, len: 240 aa; similar to TR:AAF10929 (EMBL:AE001982) Deinococcus radiodurans ABC transporter, permease protein DR1357, 218 aa; fasta scores: opt: 721 z-score: 842.8 E(): 0; 57.7% identity in 213 aa overlap and to SW:PROW_BACSU (EMBL:U38418) Bacillus subtilis glycine betaine/L-proline transport system permease protein ProW, 217 aa; fasta scores: opt: 212 z-score: 255.8 E(): 7.9e-07; 28.4% identity in 194 aa overlap.  Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component putative ABC transporter permease protein	ABC-type metal ion transport system, permease component	ABC transporter, permease protein	Similar to ABC transporter, permease protein homolog	Probable transmembrane abc transporter protein	Similar to ABC transporter permease protein hypothetical protein	conserved gene ATP binding protein, permease protein	Similar to ABC transporter permease protein hypothetical protein	identified by match to protein family HMM PF00528 ABC transporter, permease protein	Hypothetical protein SE0601	identified by similarity to OMNI:NTL01CA0974; match to protein family HMM PF00528 ABC transporter, permease protein	ABC transport system permease protein; Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020) Binding-protein-dependent transport systems inner membrane component, YusB	metal ion ABC transporter permease	Similar to several membrane transporters including: Yersinia pestis putative ABC transport integral membrane subunit Ypo1319 or y2865 SWALL:Q8ZGH8 (EMBL:AJ414147) (223 aa) fasta scores: E(): 2.9e-25, 37.2% id in 215 aa and Ralstonia solanacearum probable transmembrane ABC transporter protein Rsc0921 or Rs04492 SWALL:Q8Y0X2 (EMBL:AL646061) (217 aa) fasta scores: E(): 2.1e-22, 34.86% id in 218 aa putative ABC transport integral membrane subunit	Putative uncharacterized protein	pseudo	conserved hypothetical protein	ABC transporter, permease	Ortholog of S. aureus MRSA252 (BX571856) SAR0871 ABC transporter permease protein	conserved hypothetical protein	
HELPY01544	LPS biosynthesis protein	glycosyl transferase family 8 protein Similar to Q8A3T1 Putative stress protein from Bacteroides thetaiotaomicron (309 aa). FASTA: opt: 308 Z-score: 375.2 E(): 5.2e-13 Smith-Waterman score: 348; 26.599 identity in 297 aa overlap. ORF ftt1237	Glycosyltransferase	glycosyl transferase family 8 protein	glycosyl transferase, family 8	Glycosyl transferase, family 8	Glycosyltransferase, family 8	Glycosyl transferase family 8 protein	Putative lipopolysaccharide biosynthesis protein	Lps biosynthesis protein	Putative LPS biosynthesis protein, glycosyltransferase	
HELPY01545	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01546	Putative uncharacterized protein	phosphoesterase, PAP2 family	Phosphoesterase, PA-phosphatase related	hypothetical protein	Phosphoesterase, PAP2 family	Putative phosphoesterase, PAP2 family	Putative uncharacterized protein	Putative membrane-associated phosphoesterase	Putative uncharacterized protein	Phosphoesterase, PAP2 family	Putative uncharacterized protein	
HELPY01547	Methicillin resistance protein	teichoic acid linkage unit synthesis (undecaprenylpyrophosphate-N-aetylglucosamine)	Glycosyl transferase family protein	PUTATIVE UNDECAPRENYL-PHOSPHATE ALPHA-N- ACETYLGLUCOSAMINYLTRANSFERASE	Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	CDS_ID OB2910 undecaprenyl-phosphate N-acetylglucosaminyltransferase	similar to AL583920-196|CAC31518.1| percent identity: 54 in 371 aa conserved hypothetical protein	Glycosyl transferase, group 4 family protein	Undecaprenyl-phosphate alpha-N- acetylglucosaminephosphotransferase	Lin2663 protein	Undecaprenyl-phosphate alpha-N- acetylglucosaminyltransferase	Residues 1 to 367 of 367 are 99 pct identical to residues 1 to 367 of a 367 aa protein from Escherichia coli K12 ref: NP_418231.1 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA)	Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	Lipophilic protein affecting bacterial lysis rate and methicillin resistance level	Undecaprenyl-phosphate alpha-N- acetylglucosaminyltransferase	Undecaprenyl-phosphate N-acetyl-glucosaminyl transferase	Possible involvement in methicillin resistance; identified by similarity to EGAD:23076; match to protein family HMM PF00953 glycosyl transferase, group 4 family protein	Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase	probable glycosyltransferase	Undecaprenyl-phosphate alpha-N- acetylglucosaminyltransferase	polysaccharide biosynthesis protein	Lipopolysaccharide core biosynthesis protein	Lipophilic protein	RgpG undecaprenyl-phosphateN-acetyl- glucosaminyltransfera se	Putative uncharacterized protein TTHA1313	Undecaprenyl-phosphate alpha-N-acetylglucosaminyl	similar to Salmonella typhi CT18 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase	similar to BR0511, glycosyl transferase, group 4 family protein glycosyl transferase, group 4 family protein	lipophilic protein affecting bacterial lysis rate and methicillin resistance level protein	
HELPY01548	Pyridoxine 5'-phosphate synthase	pyridoxal phosphate biosynthetic protein	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	pyridoxal phosphate biosynthetic protein	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxal phosphate biosynthetic protein pdxj	Pyridoxal phosphate biosynthetic protein	Residues 6 to 248 of 248 are 98 pct identical to residues 1 to 243 of a 243 aa protein from Escherichia coli O157:H7 ref: NP_311457.1 pyridoxine biosynthesis	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxal phosphate biosynthetic protein pdxJ	conserved gene pyridoxal phosphate biosynthetic protein PdxJ	Pyridoxal phosphate biosynthetic protein pdxJ	pyridoxal phosphate biosynthetic protein PdxJ	identified by similarity to SP:P24223; match to protein family HMM PF03740; match to protein family HMM TIGR00559 pyridoxal phosphate biosynthetic protein PdxJ	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	Pyridoxine 5'-phosphate synthase	identified by match to protein family HMM PF03740; match to protein family HMM TIGR00559 pyridoxal phosphate biosynthetic protein PdxJ	Pyridoxal phosphate biosynthetic protein PdxJ	Pyridoxine 5'-phosphate synthase	
HELPY01549	4-hydroxythreonine-4-phosphate dehydrogenase	pyridoxal phosphate biosynthetic protein PdxA homolog	CDS_ID OB1013 pyridoxal phosphate biosynthesis	pyridoxal phosphate biosynthetic protein PdxA	Pyridoxal phosphate biosynthesis protein	pyridoxal phosphate biosynthetic protein PdxA	Pyridoxal phosphate biosynthesis protein	identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557 4-hydroxythreonine-4-phosphate dehydrogenase	InterProMatches:IPR005255 putative 4-hydroxythreonine-4-phosphate dehydrogenase	4-hydroxythreonine-4-phosphate dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark pyridoxal phosphate biosynthetic protein	IPR005255: Pyridoxal phosphate biosynthetic protein PdxA pyridoxine phosphate biosynthetic protein	similar to Salmonella typhi CT18 PdxA-like protein PdxA-like protein	Pyridoxal phosphate biosynthetic protein A	4-hydroxythreonine-4-phosphate dehydrogenase	4-hydroxythreonine-4-phosphate dehydrogenase	Citation: Roa et al. (1989) J. Bacteriol.  171:4767-4777 putative pyridoxal phosphate biosynthetic protein PdxA	Similar to Escherichia coli 4-hydroxythreonine-4-phosphate dehydrogenase PdxA or B0052 SWALL:PDXA_ECOLI (SWALL:P19624) (329 aa) fasta scores: E(): 6.3e-33, 36.06% id in 330 aa, and to Bacteroides thetaiotaomicron 4-hydroxythreonine-4-phosphate dehydrogenase BT4374 SWALL:AAO79479 (EMBL:AE016945) (364 aa) fasta scores: E(): 2.2e-124, 87.36% id in 364 aa, and to Oceanobacillus iheyensis 4-hydroxythreonine-4-phosphate dehydrogenase PdxA or ob1013 SWALL:Q8CUU4 (EMBL:AP004596) (332 aa) fasta scores: E(): 1.7e-37, 38.88% id in 324 aa putative 4-hydroxythreonine-4-phosphate dehydrogenase	4-hydroxythreonine-4-phosphate dehydrogenase 2	Pyridoxal phosphate biosynthesis protein	Pyridoxal phosphate biosynthetic protein PdxA	4-hydroxythreonine-4-phosphate dehydrogenase	Pyridoxal phosphate biosynthesis protein	identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557 4-hydroxythreonine-4-phosphate dehydrogenase	Pyridoxal phosphate biosynthetic protein PdxA	Pyridoxal phosphate biosynthetic protein PdxA	identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557 pyridoxal phosphate biosynthetic protein PdxA	4-hydroxythreonine-4-phosphate dehydrogenase	COG1995.1, PdxA Pyridoxal phosphate biosynthesis protein PdxA protein takes part in vitamin B6 biosynthesis. Putative4-hydroxythreonine-4-phosphate dehydrogenase 1	
HELPY01550	Probable O-sialoglycoprotein endopeptidase	plobable glycoprotease	glycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	CDS_ID OB0648 glycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	similar to AX065803-1|CAC26141.1| percent identity: 90 in 344 aa putative o-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	o-sialoglycoprotein endopeptidase (gcp)	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	
HELPY01551	Flagellar basal-body rod protein	Flagellar basal-body rod protein FlgG	Polar flagellar FlgG homolog	CDS_ID OB1564 flagellar hook-basal body protein	Flagellar basal-body rod protein FlgG	Putative flagellar basal-body rod protein flgg	Flagellar hook protein FlgE	Flagellar hook protein	Flagellar hook protein	Flagellar basal-body rod protein flgG	Flagellar basal body rod protein FlgG	FlgG	Residues 1 to 260 of 260 are 99 pct identical to residues 1 to 260 of a 260 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287212.1 flagellar biosynthesis, cell-distal portion of basal-body rod	Flagellar basal-body rod protein FlgG	Flagella basal body rod protein	FlgG protein	Probable flagellar basal-body rod protein flgg	flagellar biosynthesis protein FlgG	conserved gene flagellar basal body rod protein FlgG	flagellar biosynthesis protein FlgG	identified by similarity to SP:P75939; match to protein family HMM PF00460; match to protein family HMM PF06429 flagellar basal-body rod protein FlgG	Flagellar basal-body rod protein FlgG	identified by similarity to SP:P16439; match to protein family HMM PF00460 flagellar basal-body rod protein FlgG	InterProMatches:IPR001444; Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: flagellum (sensu Bacteria) (GO:0009288) flagellar hook protein	flagellar hook protein FlgE	Flagellar distal rod protein FlgG	FLAGELLAR BASAL-BODY ROD PROTEIN	Flagellar basal-body rod protein FlgG	Flagellar basal-body rod protein	


HELPY01554	UPF0174 protein HP_1588	Hypothetical UPF0174 protein JHP1494	hypothetical protein	Hypothetical protein	protein of unknown function UPF0174 PFAM: protein of unknown function UPF0174 KEGG: pau:PA14_03370 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
HELPY01554	UPF0174 protein HP_1588	Hypothetical UPF0174 protein JHP1494	hypothetical protein	Hypothetical protein	protein of unknown function UPF0174 PFAM: protein of unknown function UPF0174 KEGG: pau:PA14_03370 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
